LOCUS       DAPIWQ010000001        43634 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.001, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000001 DAPIWQ010000000
VERSION     DAPIWQ010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 43634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 43634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..43634
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.001"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            53..1015
                     /locus_tag="RJ267_000001"
     CDS             53..1015
                     /locus_tag="RJ267_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7387899.1"
                     /translation="MNLDFLNEFKLKNKDLNEKLEFLIPDFLVKKAITIIYANGGSGK
                     SYLSAAISKTLCKDVRVKSIVYIDMDNPLNVLNERGFSELILNESKFTYIHRSSLKTS
                     AYELLEMIENKGVAGSYEGVFFVLDSLRNFADIDNDTKMMSLMSLLMNLRECGATIIA
                     LHHSTKDGRAFKGSNHIRNSSDCMYFLQKVANLEQGFEVLLSVQKERAGIKDQAFFIN
                     TKTLNIKNTDLQNAKISDKEEAFIEKVLKLLKEKSLSTSEILSALDVSRSDNFSRNTL
                     EKFKGVFWESELGGENGRTFVWKSLKADNKDSNDKELSLFGDEL"
     gene            1012..1281
                     /locus_tag="RJ267_000002"
     CDS             1012..1281
                     /locus_tag="RJ267_000002"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7387900.1"
                     /translation="MKFNPPSKEDLIKAIDEFNAKNSCSIPYFIADSFINYYKQDDGR
                     WLMANKKPLKCWKRALNSTWLPKLANKYKNKDKQKALASWLEEEF"
     gene            1281..1973
                     /locus_tag="RJ267_000003"
     CDS             1281..1973
                     /locus_tag="RJ267_000003"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7387901.1"
                     /translation="MDNAKETLKELFGISEVQAVVIEKLYFKAKTPKDILGFKKYYDL
                     TMLKKQFVGTSYEKLSLVCAFAELDLNLRYKNIESFLEWLFISFSNRFIFQTKKGDFS
                     YSFVLRYYDGNIVYDELGKPVLKHVDCGDNLYFINANKELCDEQRKPLNAGEFYNKLV
                     EYMFKNQDKIIFDNKIEISPVIKTQIPSQTKINKDYEQNYLEYKKNQNKLYNANIDKF
                     TSKLEQILKAKK"
     gene            1970..2419
                     /locus_tag="RJ267_000004"
     CDS             1970..2419
                     /locus_tag="RJ267_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1018 domain-containing protein"
                     /protein_id="HDV7387902.1"
                     /translation="MNTQNTLKKHLIKIIHTLRKDTNLSDDESYRWVLNERYGKASSK
                     DLSIDELRDFAITLGYDEKFLKKQNTKKARYFKKENTKSGRATKKQLNMIQAIWSKNA
                     KNPTQWALREFINNIVKKRPLHLWYLSIEDANKVILGLKNLENNSTH"
     gene            2466..2741
                     /locus_tag="RJ267_000005"
     CDS             2466..2741
                     /locus_tag="RJ267_000005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7387903.1"
                     /translation="MILEIHSYDAEFFLTLGIEKHSQIAFAAKRTSLEIMHNGITHQI
                     KTDKDFGILLNVVCNIREKLDESFDEEDKSLVIDIDEIVAKVCKELE"
     gene            complement(2733..3404)
                     /locus_tag="RJ267_000006"
     CDS             complement(2733..3404)
                     /locus_tag="RJ267_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HDV7387904.1"
                     /translation="MKKIISVLILALSLLNAKSFEESKKELVKFYNDLGSSYWYDFYC
                     QAPFKVNKKGKYISFEVIKSDLYAPRNEYTKKGKINQRIKRIEWEHIMAAQNFGKHLP
                     CWKEGGRKACKNDPTFAKMEADKQNLVPAIGEINGDRSNFRYAEAPTNLKYTQYGNCK
                     VYTDFKAKRFYPANYSKGWIARSYLYMSKTYNIKLSDQERKLMEAWDKQYPMDEKEKR
                     IRELL"
     gene            3498..3782
                     /locus_tag="RJ267_000007"
     CDS             3498..3782
                     /locus_tag="RJ267_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002888031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HDV7387905.1"
                     /translation="MLSNNEYFEYFIDFVKNNDKREILKEFGGANIYIPSYKTLLRDE
                     ELKQDFKTLIKQGISTKNASVECAKKYDLSLNAVYLITKELRENLEPSLF"
     gene            complement(3779..4756)
                     /locus_tag="RJ267_000008"
     CDS             complement(3779..4756)
                     /locus_tag="RJ267_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDV7387906.1"
                     /translation="MVRKPKFKLIAKGEDITEKLSKNLISISYEDKEKAESDEISLSV
                     FGLYSKPLFGDSLELWLGFEKLYKCGSFSVNVVSKNYTSNTTEVRASAINFSGKGSVN
                     IKEKKTRSFENTTLFTIARKIANENNLKIKTSGEDQNIVSILQNNQSNLEFLYSICFD
                     YGFICCVKENTLIITPKDGKIGDNAANITSKNENLPLFEIALKECISLEISESARNEY
                     SAVIAEWQDINEAKIKSIKVGSGENIYKMQISQPKNDNEAFKKAQAKLNELQKGGLNG
                     RCELIGREIRAGGKLKIKDINMDHYEFSIKSVSHSFNDQAYIISVEFES"
     gene            complement(4750..4941)
                     /locus_tag="RJ267_000009"
     CDS             complement(4750..4941)
                     /locus_tag="RJ267_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HDV7387907.1"
                     /translation="MSKIYIAKNNERLDSIVYKHYGTLLYFNQVLLANPRLEPLLKTG
                     DKVILPSIEIKESKEKALW"
     gene            complement(4934..5308)
                     /locus_tag="RJ267_000010"
     CDS             complement(4934..5308)
                     /locus_tag="RJ267_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDV7387908.1"
                     /translation="MVLALGEFEFKALNFDNLERSLEYNIQSQNRLNNHNALFASSKE
                     SEKIKIQGKTLPLKGDRNTYLDKLENMAKEQRSFILTGANGKYYGKFVILSLNENRSA
                     FVDGSGFVAQSFSMDLERDFDE"
     gene            complement(5434..6672)
                     /locus_tag="RJ267_000011"
     CDS             complement(5434..6672)
                     /locus_tag="RJ267_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7387909.1"
                     /translation="MTGAKIGFFSEPTKAVDFLKNKKPELSFDYDELSYSTHKKVFTI
                     AKLMDESLLKDMQDTLVNAIKNGDKFSTWSKIAEEKLKAKGWWGSKEVINPKTGEVKK
                     THFNSARLKKIFEENSRKAKAKTIYENQMKSTKPYFKYCTQKDSLVRDKHRAFDSIVL
                     PKDDPFWDTHYPHVTMHDYGCRCKVINLGESEVKDLKIPPSNTKESEFNGFNDEELLD
                     ELYKQKNTEVIQNFIKLDMLSAAAKKTKEVKSFAHQKELYTWQKSLDDMVDEVLIKDN
                     QKYPINFIQVGKMDKSTKEFLEKLNKKDLEDLYFTLSKNNLLHASPKRKASYNQALSA
                     DEIKQIVKVLDEAKEVYWDNANNSLLYFFEDKKDASRINKIVITPDYKLKKFGKTNAI
                     VTLGKVEVINKDNKTYIKIR"
     gene            complement(6674..8044)
                     /locus_tag="RJ267_000012"
     CDS             complement(6674..8044)
                     /locus_tag="RJ267_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 family protein"
                     /protein_id="HDV7387910.1"
                     /translation="MKKEIKSKREVILKNNSLINTLINSSYLNVLKISENDQRMIFKD
                     LSFTQAHQSRRSVILAKELQIVCENEKIKESFEYLFNPDLLSQILETYLYGLNIFEVN
                     YKLKDGFYYPILKQRDFRNFGFNENDELVYNGNGCEEIVEDKKAIYGLFGSNFLFKNG
                     DALLTKLYFPVKLKNASLKFWMEFLERFGSPWAVAKTDSDPDALASEIHQMLNGDSAV
                     IDKEEELDLIQPKAKANYNEIIDYLDNQIRSVVLGANLSSQVSGGSLAAAESHNQIRK
                     DLAAQDGQIVLFILNRAIKFFKEINHFKDELYVQFFSEAEPKSELCERDLKLFNMGFC
                     FDEEYIKSTYNVEGELIRETLEKKDFKDLENDKKVFENKVKLESFEEDFIDKGLEQKE
                     YLKVDESMSKFFQEQFESIVKDCKDFNEALNKLKENFSSLEQSEFEKHLFIALNNSSI
                     LGYLED"
     gene            complement(8054..9724)
                     /gene="terL"
                     /locus_tag="RJ267_000013"
     CDS             complement(8054..9724)
                     /gene="terL"
                     /locus_tag="RJ267_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HDV7387911.1"
                     /translation="MLFSKEELDEFLISNEQKHENTPNELKGAMQRKDFLEWMDELKN
                     ELKTQFLHESHLDPTLKEERIKRASVDFDYFARTYFPHYFTIKGECGLHLHLNEVFTK
                     IALKKESKGEKHAIAAPRAHGKSTYTSQLFPLWCLVFNYKSFIVEISDAVELMEGMLE
                     AIKAELEGNPHLKLDFPEVVGIGKTWRVGEFVSNNGVKIKAFGSGKRLRGVRYGVKRP
                     DLVILDDLENDTNVRSKDQRDKLEDWVDEAVLNLGSADGSLDVLYIGTILHNDSVLSR
                     KLKLGFWNPKVFRSIEEFPQRLDLWDEYATLYRNTDFNTAHQFYLKNKALMDKGAKVL
                     WEEAKSLEDLMKLRAENLKAFNKEQLNNPRSENQIFSLDSINFYDVLPPISQYYMYID
                     PAGEKAKSDFTAITIIGKGAKGFYVAESIVKILKAQSIIKTIFNLQKIYKCRLIEIET
                     NGGQFFLKKWLQEKSLESGVFLPLRGKNNSVSKFERIESLSLAFENEELFLHKSQTML
                     INQLLEFPEGKNDDAPDSLAGAFLLARTKSSIKRRKHHFNSVSRIRRF"
     gene            complement(9724..10323)
                     /locus_tag="RJ267_000014"
     CDS             complement(9724..10323)
                     /locus_tag="RJ267_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004297483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HDV7387912.1"
                     /translation="MAKNLTSTTKPKMAKVGCGLQVGAESETPARKDKFTSSAKSQNN
                     LKDLAKELYIAGFDIFKIAKILNRNEKTIRNYKAKDGDWDKQKANLLTSKIKDKESAS
                     LYESFTEQMFCAIENINTDEKMNAEKKTEAIARIGDSFSKMRKVARLEDPSSYRLNVA
                     KKVVEIIISHLKNDKDCVAKLVSLLESGVIEKEILAMDI"
     gene            complement(10316..10774)
                     /locus_tag="RJ267_000015"
     CDS             complement(10316..10774)
                     /locus_tag="RJ267_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 family protein"
                     /protein_id="HDV7387913.1"
                     /translation="MNYQDILEEKLITETKTHFFMIDEKDLIKELSVHAIAELSDLNA
                     DGVCDKEVIDDAINDAQSYIASFIKIPKNPTPLLKDICVKLTIMELKRRNDFPKESLK
                     EIREWANDLLLKMANKKIPTEINEDNFISQNKVRAFKIKRKRMDLRRLNG"
     gene            complement(10890..11867)
                     /locus_tag="RJ267_000016"
     CDS             complement(10890..11867)
                     /locus_tag="RJ267_000016"
                     /inference="COORDINATES: protein motif:HMM:NF015802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HDV7387914.1"
                     /translation="MDLEQLLELFSSTKITEVINQTKASPRFVSDTFFKDKIPSLEST
                     VRVEIIKGAGIVLNSISDNGEHSLENTKDAYILNIPLPRFALAKRISASEINSLRSLA
                     LQEAQAKSLSGALGVLVKEMKESFNTTLEYMANGALFGKILDGKGNVLFDFGSASKKA
                     ISVKKDGSVTLASVCDAIDSAIIDEFGTSADYEVLCGNELFAAISNLALSEDLYKNHL
                     ASRDEKDKSLILYGTKYRRYSAKYKNTNGKSVEFLKGTEGMVVPKDNSNRIYYTRANH
                     TDALGKAPSLMFVSKPEILPRGAGIEIVGEMRAMPVCTRPNGLIKLVLE"
     gene            complement(11870..12397)
                     /locus_tag="RJ267_000017"
     CDS             complement(11870..12397)
                     /locus_tag="RJ267_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7387915.1"
                     /translation="MAKAKKETQNLENEDLETGDLSKALSLEDENLANEEAVSENETA
                     KEFINEEGEEMPSKVTPKSLSNDPLIAMPKSLESFINKDLFSINAKIDLETNESLALG
                     TLLISEDFGESFKKCPNEDISAKENVKLAMLKDHALRSGVYGVLLAGEINLKGVHVSA
                     VKKAFMQNLIINTKE"
     gene            complement(12400..13215)
                     /locus_tag="RJ267_000018"
     CDS             complement(12400..13215)
                     /locus_tag="RJ267_000018"
                     /inference="COORDINATES: protein motif:HMM:NF021627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7387916.1"
                     /translation="MLFINKENLVEVSNDKPIKVAIKGEWKGHNNGRFKVDDKDLNSM
                     IDNFNQKKIDLVIDYEHQSLKNEKAPAAGWIKELYLENDALMAKAEFNEEAKKYIANK
                     QYRYLSPVFEFNSKDNKSGELVRAKLHSVALTNTPFIDELGELIANKNNIHQNKGEKM
                     DEKIKELESQIIALKNENSSLALQNEALKKQNEESVKNLASSLVDNALNSGKIANSQK
                     EWALMYACKDLEGFKSFLDTENDQVQVPKNNVFANKNTAKTNEFDVVKMMLGD"
     gene            complement(13217..13651)
                     /locus_tag="RJ267_000019"
     CDS             complement(13217..13651)
                     /locus_tag="RJ267_000019"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7387917.1"
                     /translation="MLKSFENELLELLKDFKVRMYLGEFEDTQNIASCINNLDASLLL
                     DFEGESYKDLENKVGTWKLYILTHTKSKAPKHRIDAKHKLFDAIEAVDKVLLNAEPSN
                     GFRIELKDLKKVYEGISDHGYLSIYARTLQSSFLPKDDFLRI"
     gene            13800..14189
                     /locus_tag="RJ267_000020"
     CDS             13800..14189
                     /locus_tag="RJ267_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF882 domain-containing protein"
                     /protein_id="HDV7387918.1"
                     /translation="MKNNPYFKESEFKCKCGKCELPQNVPSDELIDILCEIREHYNAP
                     IIINSGYRCKEHNAEVGGAPKSQHTIGSAADFVVKGVKTEEVHQYVLNTYGERSLGIA
                     IKHNFNDPYAGFVHLDTRGKKARWTYP"
     gene            14200..14541
                     /locus_tag="RJ267_000021"
     CDS             14200..14541
                     /locus_tag="RJ267_000021"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7387919.1"
                     /translation="MFSFILSRFLSPSKIAFFVLIALCGFLYLKNNALALENENLKLK
                     ALHFSNEINVFKDKLAQQNKAIDKLKLDLKPKETLKEVLKVDKVFIKDKSCQSELKAY
                     KELFNILGAKK"
     gene            14538..14786
                     /locus_tag="RJ267_000022"
     CDS             14538..14786
                     /locus_tag="RJ267_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7387920.1"
                     /translation="MNDKMRIFLLIIPFVFLSACASKDILIKTEIKEVKVPIKCPLKL
                     PLKPLDKKDLESAKEISKYYLEVENIAKLCTGEKDERK"
     gene            14898..15212
                     /locus_tag="RJ267_000023"
     CDS             14898..15212
                     /locus_tag="RJ267_000023"
                     /inference="COORDINATES: protein motif:HMM:NF027409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7387921.1"
                     /translation="MKLEDIFVYMVLMIVSFIAGLVGIVTKNKLSKALNLKGKFTLFL
                     KGMLGSMFVAYLVFEIVNYLNFGIKLSVAVGGFAAYMGTDALLKIEQLVEKLINKKME
                     KL"
     gene            15212..15844
                     /locus_tag="RJ267_000024"
     CDS             15212..15844
                     /locus_tag="RJ267_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDV7387922.1"
                     /translation="MNELGIICDIKEGKAKVAIGDMVTDFLSVFQSLANSYAVSFSPL
                     RIGEQVLVIPVRGDLNSGVILRGLYQEKHRAKNTDENTFNIDFEDGTHLEYNSKSSTL
                     KLDVVKNINITCVDKNTHNQNNTLNTKNHTTNANTITLNAPSINLNGNTQIAGAISTS
                     GEGGASGTFSIKGNLNLIGNLQVSGNISDSKGDLTNHTHSCTCGATASPR"
     gene            15853..16044
                     /locus_tag="RJ267_000025"
     CDS             15853..16044
                     /locus_tag="RJ267_000025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7387923.1"
                     /translation="MKELFLLLFSLVFFMLFCMGAFYAFLNLNFFIKSIFIGFFIAFM
                     FLGFSQMLENIFEFYKGLK"
     gene            16041..16331
                     /locus_tag="RJ267_000026"
     CDS             16041..16331
                     /locus_tag="RJ267_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HDV7387924.1"
                     /translation="MNYMVSIEESIKDILITPLGSRVMRPEYGSLLYTLIDRKIDDDF
                     KIKLTRYTAEAISKWEKRVKLKGVRLNECKDNKLSITLLFENYGDLTMELGK"
     gene            16328..17494
                     /locus_tag="RJ267_000027"
     CDS             16328..17494
                     /locus_tag="RJ267_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009650649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDV7387925.1"
                     /translation="MSELLSVNDSYFKQSFLKDIPYPQIIEELDYEKLLKAYEELFKS
                     FLKDNVELLESDPFKAILEALAYREMIIRARINESIKATYLHYAKGSDLDNVVANGYL
                     IERLKGVKPTAKVEFELNTLLTYDVIIPKGAIFSNEKADLATLKEEVVIKKGQSKAQG
                     ILELDEFIQSKESKTEFLQTPLPFVAKIKQLEFFKGGASEESDEALRERAIMSVHRFS
                     TAGSEKGYIYHALSASAKVASIKALNNGAGKVRVIIKSEDELSVDVVKEYLSADERRP
                     LTDEVSVELAKKREFIVDAKLLLLELSRANEISEKINALQKDFDLSVDLALGFIYKCL
                     HQDGVYKSEILSIKEKIINEEEQELKDLPLENIIIADDEFATLSFSLSYEKAVL"
     gene            17491..18111
                     /locus_tag="RJ267_000028"
     CDS             17491..18111
                     /locus_tag="RJ267_000028"
                     /inference="COORDINATES: protein motif:HMM:NF021220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HDV7387926.1"
                     /translation="MNTLILNHHPKQSKAIDLSAKTRFEDLNLASITNLALNCDERLL
                     PILANAYDVSIDGLNEKESRKLISKALLLDRYNGTTWAIKEALRAVFPTAVVKEWFNY
                     GGKPYFFKVKVSTTNVSFDERTLNTLERLIYDFKNVRSVLEAIEIEIESKNDSFNANA
                     QISGETIEILPFQTTFLENEIKSTKNAFGVFMCEISRTNIDFKGVY"
     gene            18111..19142
                     /locus_tag="RJ267_000029"
     CDS             18111..19142
                     /locus_tag="RJ267_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDV7387927.1"
                     /translation="MAKSEYYTILTKIGIAKFIAARASGNGINLKSFKLSSKVILPSE
                     EMQSLEEIVYEANISSKSVDESNPNYVNLMCHVPSDVGGFEVNAVGVYDEAGDLLAVG
                     NVPRTYKPILKEGSAKELMIKIVMELSNAEEVILKLDPSVIMASRDYVDAIKVELNLK
                     IDALTQKYDAEFKKVWDELSKYLLENKFNTEIAKYVTLATNQTITGAKNFTKLPTSSI
                     KATNDNQFVNLATLKEQAPSLIGGLGVNQAWQNVSRAFDVTYTNNTGKPIAAKFQVNA
                     SASGGISFSCSEQFVVSMFQTSLSNGGVSRTYFGFGIIPPNGQYRLNTPEHSGFYPSK
                     SIVSFMELR"
     gene            19167..19673
                     /locus_tag="RJ267_000030"
     CDS             19167..19673
                     /locus_tag="RJ267_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HDV7387928.1"
                     /translation="MKYFIDKNDNNQIYAYEDEVSDEQIKTGLTPISEEEFNSLINPP
                     KSEEELLNEAKELKINEINTKKENILNGGFSFKGKIYQSSNEDQLRINGAVTNALVNP
                     NLIPYIDWIALDNSTTRFSVEEFKLFASSMAYFVQETIFKASALKEKARNAQSKEELD
                     LIVWESEK"
     gene            19670..20041
                     /locus_tag="RJ267_000031"
     CDS             19670..20041
                     /locus_tag="RJ267_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1353 domain-containing protein"
                     /protein_id="HDV7387929.1"
                     /translation="MTKTELKRVCVKPYDKDRFEVISDYAFSLPNYKGIVPQGFKTDG
                     ASIPRLFWSLFPPFKSEYFSACVVHDFLCEKANSRTDYRTADLALKEAMTLLGCSRLK
                     IFVFYHSCNLYHAIKCLIKGK"
     gene            20141..21148
                     /locus_tag="RJ267_000032"
     CDS             20141..21148
                     /locus_tag="RJ267_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7387930.1"
                     /translation="MKDYGISFIPDINQGSKEPSEPIVSDKLNAQKVNELIDKKLKLF
                     KEELVNKEELKSLIEEILQDQNFQNTNIKISKTPPNYNTQAKVGEIWAVLESKKQLFI
                     CTANDNDFTSWVDLLGDGSNDIIPKEKIIITFDNTTTGGQYGGCMSDLRLGFENGFAT
                     PNKVQDEYENAKFTMTKDGNGLNRSDFTIDSNPTPTDNQIVGTIKTSGIYQETYHKIA
                     HVFKKYNGGADECCLWSSSGSREVSIELENTPMPNKLFARGNGYYGQTEITNVRVKKS
                     IFIGEQEIQSEDFNVEKLEASSDTYGDYAFLFEISKQDQIVMKKELNLNPKKNKKYKK
                     M"
     gene            21167..22360
                     /locus_tag="RJ267_000033"
     CDS             21167..22360
                     /locus_tag="RJ267_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath family protein"
                     /protein_id="HDV7387931.1"
                     /translation="MAANYGVNFNISNGAASPIKVQSDTPIGIAASLKGASKEMIYTK
                     AGYESVEAMPIFAFSNVNKAKEFVNDLIKENNLQDFRLLDTLECINLQNVSNVIIVSF
                     FEESEESENTLTNIVNAIEAFKKAKHKTGFSPDLIITPYYSHEAGVKAKLESVASSMN
                     ITAIVDLYATNVGEAINTMEAFSSKRLIATWPQVQILNTQGKYAYVPQSPIIAGLIAH
                     TDGDKEYGFSDSYSNRVMNGVTGTEHFIEFINGFDCDAERLRNAHISTCILGEGYRSW
                     GGETSHEDTIWQDLARVRTFDRIALAGQKAAFKAIDKKASELYFIKISIEELLRDLKG
                     AKVLIGYEVSWDEERNTDANVSAGKFYLNIKMMNNPIVKQITLEFIYSDKWASDLIKT
                     ISADS"
     gene            22387..22896
                     /locus_tag="RJ267_000034"
     CDS             22387..22896
                     /locus_tag="RJ267_000034"
                     /inference="COORDINATES: protein motif:HMM:NF016846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HDV7387932.1"
                     /translation="MKRIIGEVIQEGNIYIDGQGYLGVVRNLKLPDIEQEMIETKGVL
                     GANYSSGVLKPLEISFKLAVVDPVLYAAFFHTTFSEIKAPLLFRESVHKGGKNYGIST
                     EFLGEFISISESDHESGKEVEAEIKMAVHFYMQRRNNIPIITYDHKNTILMINGVDMM
                     SDVRSNLTL"
     gene            23049..23288
                     /locus_tag="RJ267_000035"
     CDS             23049..23288
                     /locus_tag="RJ267_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HDV7387933.1"
                     /translation="MKEKIIKLENGEELKMREPNVRVLKNATNKGEKEMEQTICMIAA
                     LTNKQESEIEDLNLKDFKALQDALKDFLVEAGVIA"
     gene            complement(23400..23705)
                     /locus_tag="RJ267_000036"
     CDS             complement(23400..23705)
                     /locus_tag="RJ267_000036"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7387934.1"
                     /translation="MKVLKFINDDIISHIALLLTTLIPAFYISYQSASDGFFNTMAIF
                     IFSYFASIIITAILVMIMPPIALLLILPTWLIVISLDFILFAILKIYFLKNKTIKNS"
     gene            23747..25963
                     /locus_tag="RJ267_000037"
     CDS             23747..25963
                     /locus_tag="RJ267_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDV7387935.1"
                     /translation="MENAGSIGIGVILGLAIKNASAVGKVVKDFSNLEKIAAKTKLGI
                     SGLQKELNTLKLNANLRAELKAQRKGLQDEFLSLGNVIRGGIIGKGLGEAISFESAMA
                     DVRKVVNFDEGDDIKKMSADILKMSQTLPVTANELAAIAAAGGQIGLGSKDVREFTNL
                     VTKMKVAFDMSAEDVGDSVAKIKNILGISLKDMEDLGDSINNLSDNSASKAREIIDVM
                     KRTAAAGKQIGFTKEQIAALSSSFISLGKGPEVAGTAINSLYRVLATADNMGTKTESA
                     FAKLGISGAFLKQASFDDPQKALDMFLQRISKLDQKEQMGVLVDIFGREFADDMATLV
                     GGLDTYKEALKNAGDEAKKGSLQREFDTRAATTENSIILMKNAFNSLAVNLGSVFLPA
                     ISWVSAGISYLVNSITYITGLVPGLNGVLGGLIATFLLAKPAVLAYAIAKNYLKDCTI
                     LLKSALIKTRIHLLAFRNSCILSNITLKAKTVTTTIYTTSLKALSFVVGGLNKVFKAV
                     AIGIRVLSMAMMSNPIGLILGGIAIVAGLIIANWDKVKSWFKSFIEWLKPVWEPIYNV
                     IKAVFDKCALVFTSFKDIIMSVASPLAEFLNSIWQGVGDFFYSIFGSLFDWFASKLSW
                     VGDMISSISGFIKDALDFVGLGDDEEVKISQSEQNKEKVFTTNTYKDELAKTKSINHT
                     PSFNNGNINISVNGTFNIATKDGNFNMQEFANAIQKSVFDALRKQEQNKINTTIYG"
     gene            25967..26455
                     /locus_tag="RJ267_000038"
     CDS             25967..26455
                     /locus_tag="RJ267_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDV7387936.1"
                     /translation="MSEYIEIKGLENFFKACDKLIDMDKHGQSIMAGAGESIRNSIID
                     SFKNERSIFNGKWKSLKPATIKQKIKDGKNKGILKRDGELSNALNWQSEPTKSGVKVF
                     NNIQTENGFKYGYVHQWGNRKRKIPQRAFLPIDNNKVLHPSIRSVIYKDTKDFIEKIV
                     KK"
     gene            26657..27472
                     /locus_tag="RJ267_000039"
     CDS             26657..27472
                     /locus_tag="RJ267_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004297138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HDV7387937.1"
                     /translation="MKNNTDKFLKTSTLIKPTRTTLKAPFAWVGGKNYLAKEIIALMP
                     EHKSYIEVFGGALSVFYQKSASKIEVINDINDELINLHLCIRNKPQSLTNVLNSMIIS
                     RKIFHMLKNKEIKPRNDLERAAFYFYLISTSFGSSMGQFAMSKQRAPKRLCRDFSLHT
                     KRLKNASIENKSFEYILKEYDYNEALFYLDPPYVGTENYYKNTGGFGLKEHELLCNLL
                     KNIKGKFMLSYNDCELIRELYKDFNIKELKVRYSLNNNVLKRKESKELLIMNF"
     gene            complement(27500..27787)
                     /locus_tag="RJ267_000040"
     CDS             complement(27500..27787)
                     /locus_tag="RJ267_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7387938.1"
                     /translation="MSKVIVDIKKGFSKTFINAICNHNNELVLEYLKNGMSATKECMG
                     EEPMFYAITHNNFGAILLLLKYGAILDKEYLEESNKDFSKEALKFLSSFLK"
     gene            complement(27867..28061)
                     /locus_tag="RJ267_000041"
     CDS             complement(27867..28061)
                     /locus_tag="RJ267_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7387939.1"
                     /translation="MKYPNVYVKLVGEDGNAFSILARVSKALKKAGVSKEEISKFQKE
                     AMSSDYNHLLNVVQDWVNTN"
     gene            complement(28071..28391)
                     /locus_tag="RJ267_000042"
     CDS             complement(28071..28391)
                     /locus_tag="RJ267_000042"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7387940.1"
                     /translation="MKDIKNYTDKELKEKIIQDLESEFRILYKKLLKEKDYLARDNIL
                     ELMTIYNMGINSYSIAKRFEMNEDKSLIQVPLFERYIIGRKFVVKYNDEKQRYELKST
                     FCEF"
     gene            complement(28472..29101)
                     /locus_tag="RJ267_000043"
     CDS             complement(28472..29101)
                     /locus_tag="RJ267_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HDV7387941.1"
                     /translation="MQMQEVIEKLKDILASEGKRDLKTKDIAKELGIHPDTFNSMKFR
                     NSIPYPQILNFLNERNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGGGGINDL
                     IDCSELIMDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICVIN
                     TRDGLFIKQVLKQDDGVILHSLNPLYEDIFYKNGDFLLIGVVIGELSRL"
     gene            29396..29596
                     /locus_tag="RJ267_000044"
     CDS             29396..29596
                     /locus_tag="RJ267_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7387942.1"
                     /translation="MGIVTSIRKYKNTLSKNVTILEGKKHFWDIKFKIKARVYPSFKQ
                     HLITFLGQSGHFGIFGIFYALD"
     gene            complement(29700..30146)
                     /locus_tag="RJ267_000045"
                     /pseudo
     CDS             complement(29700..30146)
                     /locus_tag="RJ267_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343582.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(30270..30677)
                     /gene="ybeY"
                     /locus_tag="RJ267_000046"
     CDS             complement(30270..30677)
                     /gene="ybeY"
                     /locus_tag="RJ267_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HDV7387943.1"
                     /translation="MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGF
                     DHENDNGEMREKEKELIEHFNLPKSLIVRTLED"
     gene            complement(30674..31288)
                     /gene="recO"
                     /locus_tag="RJ267_000047"
     CDS             complement(30674..31288)
                     /gene="recO"
                     /locus_tag="RJ267_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HDV7387944.1"
                     /translation="MQGFILHTQKVKDEDLIVYILSPKMLIKAYRFYGLRHSSILSGY
                     KIDFALEENPSFLPRLKDVLHLGFLWIMQRDKMLIWQEFIRLLYRHLKDVEELDSFYF
                     DLLDECVKRFEKQNPKRVIVDAYLKILEFEGRLHKDFFCFACDEKIQNSITLLRAFLP
                     SHSQCALGFEFEEKKLKQFYSSKNCAIFDDEEIENLYHLIKEGL"
     gene            complement(31288..31809)
                     /locus_tag="RJ267_000048"
     CDS             complement(31288..31809)
                     /locus_tag="RJ267_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HDV7387945.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFDKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEHYLQSKEGLNLPVKHCIKESLGWQMPKEFEPFLQKAHKIFYKNTFGSL
                     ELANFIQKSDYEELHFAGLVSHICVFCNIILAFGAKPNARIILHQNLSASFDENLEKS
                     AFDILRAYGIEIV"
     gene            complement(31814..32569)
                     /locus_tag="RJ267_000049"
     CDS             complement(31814..32569)
                     /locus_tag="RJ267_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HDV7387946.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALAHL
                     LNRMQAHAPFKFELEAVTLSYGMGEDYSHLHAHCEEHGIKHSVLDSNIYEVSGDTIRE
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIHNGALRTLAPIY
                     QSKRGITVIRPLIFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQ
                     LLANLEKDHPKLFTSLKTAFANLHTESFWLQKA"
     gene            complement(32566..33255)
                     /gene="pfs"
                     /locus_tag="RJ267_000050"
     CDS             complement(32566..33255)
                     /gene="pfs"
                     /locus_tag="RJ267_000050"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HDV7387947.1"
                     /translation="MMKIAILGAMSEEITPLLETLKDYTKIEHANNTYYFAKYKNHEL
                     VLAYSKIGKVNSTLSASVMIEKFGAQALLFTGVAGAFNPELEIGDLLYATKLAQYDLD
                     ITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKA
                     KIREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKIS
                     ANFVLKMCEKL"
     gene            complement(33252..34172)
                     /gene="fabD"
                     /locus_tag="RJ267_000051"
     CDS             complement(33252..34172)
                     /gene="fabD"
                     /locus_tag="RJ267_000051"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HDV7387948.1"
                     /translation="MNAAFIFPGQGSQSLGMGKDFYENSIKAKELLQNASDFCKIDFK
                     HLLFEENEKLNQSEFTQPAIVLNSLMAYSVLLEKKPDLSSKFALGHSLGEFSVLAVNG
                     AFDFLEALSLVNKRGLFMQEDCAKVEAGMMVVLGLDDEKVEELCQKAQKENKQIFAAN
                     YNCDGQIVVAGLKPDLASYESVFKEAGAKRAMLLNMSVASHCPLLENASAKLCVELEK
                     VLKPNFKAVISNANAKIYTSKEEALELLKAQLISPVLYKQSIKACENEVDYFIEFGAS
                     VLKGLNKKITSKETYALTNMNDIDEFLKVV"
     gene            complement(34172..34741)
                     /locus_tag="RJ267_000052"
     CDS             complement(34172..34741)
                     /locus_tag="RJ267_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDV7387949.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILE
                     SLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGEN
                     GETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLNIVDARAASEDEILTGIIAGSHSCG
                     CGSGHGHDHHHGHGHGGGGCCGGGGCGCH"
     gene            complement(34756..35703)
                     /locus_tag="RJ267_000053"
     CDS             complement(34756..35703)
                     /locus_tag="RJ267_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDV7387950.1"
                     /translation="MKKIFTVALLGATLLYAESSAFGAGDITSNSSYGLTSNEKLFKE
                     KLDNLNNENIQTNARINEINERIEGLQSTLEGINSQYAKSNSRLSQVEENNQNIENNF
                     TSEIQKLKAYVEESRKIQEANNKQVKKVLAELSSLVDAINANYVSKNELNDANLSVKT
                     ITPSVVVSTTDSNSTIENNNTQNTQDDKAKQIDESWKKKKNNEILELAIKDVDKNAFE
                     DSKAKLNFLITKQYKPARANFWLGEIEYKQKNYNNAIVYYKKSSSLSTKGDYFPKLLY
                     HTAISLDKTGDTKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            complement(35707..36204)
                     /gene="pal"
                     /locus_tag="RJ267_000054"
     CDS             complement(35707..36204)
                     /gene="pal"
                     /locus_tag="RJ267_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HDV7387951.1"
                     /translation="MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGW
                     DIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            complement(36281..37489)
                     /gene="tolB"
                     /locus_tag="RJ267_000055"
     CDS             complement(36281..37489)
                     /gene="tolB"
                     /locus_tag="RJ267_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HDV7387952.1"
                     /translation="MKKIVAIFLVFLGSLWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     ENLKKSFYNIIVNDLKVSSNFEVVANATETSNYIFEYTLNKNGNTLSLNVKIKAGGSD
                     KSEQTYTLNGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSSKKSQIIMAD
                     YTLTYQKVIVDGGLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSSGG
                     MVVASDVNVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSK
                     VVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNNSAVSTYKDFLVYSSREPNQAGVFNI
                     YLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFPL
                     RVGKIQSIDW"
     gene            complement(37499..38278)
                     /locus_tag="RJ267_000056"
     CDS             complement(37499..38278)
                     /locus_tag="RJ267_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HDV7387953.1"
                     /translation="MKNYGLSNLNSFLLALAIYISIVILVFFRLVSEVEPAIQYTDIK
                     DSFVDIELAEPSKQVITQSNTPKEIQKPTEQIDIEKLFAQTTNKTVKTEDIDQKASNF
                     NELFGNIKEIQEEKTTKIQSSAKSGISSAPKPQASELVKQLNDSLLQEESSTQGESTK
                     AQKIGIYDEFLGKVVRIITQRWTQYYPNSEKISVKVKIFIDENGKFGYTSVEKSGNPL
                     YDAKVAEFLESQKGKFITYPPQNKNISITMNLRDEVKVKND"
     gene            complement(38281..38670)
                     /locus_tag="RJ267_000057"
     CDS             complement(38281..38670)
                     /locus_tag="RJ267_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HDV7387954.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKNTSTPTVKSLIISINAKKEIFLNQEKYDFISFADNLAQRKAQFNTEDPVFIRADK
                     SLKYDDVISVLRSVKNLGFNKVALQTE"
     gene            complement(38679..39233)
                     /locus_tag="RJ267_000058"
     CDS             complement(38679..39233)
                     /locus_tag="RJ267_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HDV7387955.1"
                     /translation="MNFEAIFHFFNSSSIITYIVLLWLSLYFILAFSILFARLTYLAT
                     WRNKEKESLETLLLGEKDLSRTDSILRKCNDTTSNHLEIYKNLASRRASAGLTWLSII
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSIIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSSK"
     gene            complement(39233..39622)
                     /locus_tag="RJ267_000059"
     CDS             complement(39233..39622)
                     /locus_tag="RJ267_000059"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HDV7387956.1"
                     /translation="MNDLINFEIVTPLGVIYQGEVKSVTLPGSEGEFGVLKGHAALVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQA
                     KDLIKSMSSDNAALAATFSKLDNARMH"
     gene            complement(39626..41023)
                     /gene="atpD"
                     /locus_tag="RJ267_000060"
     CDS             complement(39626..41023)
                     /gene="atpD"
                     /locus_tag="RJ267_000060"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HDV7387957.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGI
                     YPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     VVERARKIEKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            complement(41049..41933)
                     /locus_tag="RJ267_000061"
     CDS             complement(41049..41933)
                     /locus_tag="RJ267_000061"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HDV7387958.1"
                     /translation="MSNLKEIKRKIKSVHNTQKTTNAMKLVSTAKLKKAEEAAKRSKI
                     YAQKIDEILSEISFQINKIVHNEDDVRLSLFHKKEQIKTVDLIFITADKGLCGGFNIK
                     TLKTVSEMLKEYEAKNINIRLRAIGKTGIEYFNFQKIELLEKYFHLSSSPDYEKACEV
                     IHAAVDDFLNGNTDEVILVHNGYKNMITQELKINHLIPVEPKSIEQTHNSLLELEPEG
                     TELLKDLMKTYFEYNMYYALIDSLAAEHSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            complement(41942..43447)
                     /gene="atpA"
                     /locus_tag="RJ267_000062"
     CDS             complement(41942..43447)
                     /gene="atpA"
                     /locus_tag="RJ267_000062"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HDV7387959.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFENGDKGMALNLEESSVGIVILGKGEGLKEGASVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINANEYRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQRGQGVICIYVAIGQKQSTVAQVVKRLEEHGAM
                     EYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGFLDDIAV
                     SRIKEFEDGIYPFIEAKHPDIFEQIRSKKALDSDLEEKLAKAINEFKANHL"
     gene            complement(43461..>43634)
                     /locus_tag="RJ267_000063"
     CDS             complement(43461..>43634)
                     /locus_tag="RJ267_000063"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. The delta subunit is part of
                     the catalytic core of the ATP synthase complex; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP F0F1 synthase subunit delta"
                     /protein_id="HDV7387960.1"
                     /translation="KDLEVKLNKKFDANIKLNNKISQDDSVKIELEELGYELSFSMKA
                     LQNKLNEYILKII"
BASE COUNT        14759 a         7099 c         6420 g        15356 t
ORIGIN      
        1 caaaactcac taattagtgg gtttgattaa gttttgacaa ggaaaaaata aaatgaattt
       61 ggatttttta aatgagttta agctaaaaaa taaagattta aatgagaaat tagagttttt
      121 aatccctgat tttttagtta aaaaagcaat aactattatt tatgcaaatg gcggcagtgg
      181 aaaaagttat ttaagtgctg ccatttctaa aacactttgc aaagatgtaa gggttaaaag
      241 catcgtttat attgatatgg ataatccttt aaatgtttta aatgagagag ggtttagtga
      301 gcttatttta aatgaaagca aattcactta tatccataga tcaagcttaa aaacttcagc
      361 ttatgagctt ttagaaatga ttgagaataa aggcgtggca ggaagctatg aaggggtttt
      421 ctttgtactt gattctttac gcaattttgc agatattgat aatgatacta aaatgatgtc
      481 tttaatgtct ttactcatga atttaagaga atgtggggca accattatag ctttacacca
      541 ttctacaaaa gatggcagag cttttaaagg ctcaaaccat attagaaatt caagtgattg
      601 catgtatttt ttacaaaaag tggctaattt agagcaaggt tttgaagtgt tgcttagtgt
      661 gcaaaaagaa agggcaggaa ttaaagatca agcctttttt atcaatacaa aaactctaaa
      721 tattaaaaac accgatttac aaaacgctaa aatcagcgat aaagaagaag cttttataga
      781 aaaagtttta aagcttttaa aagaaaaaag cctaagcaca agtgagattt tatcggctct
      841 tgatgtaagc aggagtgata atttttcaag gaatacttta gagaaattta aaggtgtttt
      901 ttgggaaagt gagcttggcg gggaaaatgg tcgcactttt gtttggaaaa gtttaaaagc
      961 tgacaataaa gacagcaacg acaaagaatt aagcttattt ggggatgagt tatgaaattt
     1021 aaccctccaa gcaaagaaga tttaattaaa gccattgatg agtttaatgc taaaaactct
     1081 tgctctatcc cttattttat agcagatagc tttataaatt actataagca agacgatgga
     1141 aggtggctca tggctaataa aaagccttta aaatgctgga aaagagcact taattcaact
     1201 tggcttccaa agttagcaaa caaatacaaa aacaaagata agcaaaaagc tttagcttct
     1261 tggctagaag aggagtttta atggataatg caaaagagac actaaaagag ctttttggta
     1321 ttagtgaagt tcaagcagtg gttatagaaa aactttattt taaagccaaa acaccaaaag
     1381 atatattagg ctttaaaaaa tactatgatt taaccatgtt aaaaaagcaa tttgttggta
     1441 caagctatga aaaactttct cttgtgtgcg cctttgcaga gcttgattta aacttaaggt
     1501 acaaaaatat agagtctttt ttagaatggc ttttcatttc attttcaaat cgttttattt
     1561 ttcaaacaaa aaaaggagat ttctcatatt cttttgtact tagatattat gatggtaata
     1621 ttgtttatga tgagttagga aagcctgttt taaagcatgt tgattgtggg gataatcttt
     1681 attttattaa tgctaataaa gagctttgtg atgagcaaag aaaaccactt aatgcaggag
     1741 agttttataa taagctagtt gaatatatgt ttaaaaacca agataaaatt atttttgata
     1801 ataaaattga aataagccct gttattaaaa ctcaaattcc tagccaaact aaaataaata
     1861 aagattacga gcaaaactat ttagaataca aaaagaatca aaataagctt tataatgcaa
     1921 atattgataa attcacttca aaactagagc aaattttaaa ggctaaaaaa tgaatactca
     1981 aaacacttta aaaaagcact taattaaaat cattcatacc ttaagaaaag atactaattt
     2041 aagcgatgat gaaagctatc gctgggtttt aaatgaaaga tatggcaaag cttcaagtaa
     2101 ggatttaagc atagatgaac taagggactt tgctataact ttgggctatg atgaaaagtt
     2161 tttaaaaaag caaaatacca aaaaagcaag gtattttaaa aaagaaaaca ctaaaagcgg
     2221 aagggctaca aaaaagcaac ttaatatgat acaagccatt tggagtaaaa atgctaaaaa
     2281 tcctactcag tgggctttaa gagagtttat taataatatt gtaaaaaagc gacccttgca
     2341 tctttggtat ttaagtatag aagatgctaa taaagttatc ctagggctta aaaatttaga
     2401 aaacaacagc acacattaag ccaaacgaag ctaatgttgt ctcatcaaaa caaaaggaga
     2461 ttaaaatgat tttagaaata cattcttacg atgcagagtt ttttttaacc ttaggcatag
     2521 aaaaacactc acaaattgcc tttgccgcaa aaagaacaag ccttgaaata atgcataatg
     2581 gaatcactca tcagattaaa actgataaag attttgggat tttgcttaat gtggtttgta
     2641 atatcagaga aaaacttgat gagagttttg atgaagaaga taaaagcttg gttattgata
     2701 tagatgaaat tgtggctaaa gtttgcaaag aattagagta attctctaat tcttttttct
     2761 ttctcatcca tagggtattg tttatcccaa gcctccataa gctttctttc ttgatctgac
     2821 aatttaatat tataggtctt actcatatat aaatagcttc ttgcaatcca gcctttagaa
     2881 taatttgcag gataaaatct ttttgcttta aaatcagtat aaaccttaca atttccatat
     2941 tgagtatatt ttaaattagt aggagcctca gcatatctaa aattgcttct atccccattt
     3001 atctctccta tggctgggac taggttttgt ttatcggctt ccatttttgc aaaagttgga
     3061 tcatttttac aagcttttct gccaccttct ttccagcaag gtaaatgctt tccaaagttt
     3121 tgggcggcca taatatgctc ccattctatg cgtttgattc tttggttaat ttttcctttt
     3181 ttggtgtatt cgtttctagg agcatataaa tcacttttaa tcacttcaaa actaatatat
     3241 tttccttttt tattaacctt aaaaggtgct tgacaataaa aatcatacca gtaagagctc
     3301 cctagatcat tataaaattt tactaattct tttttgcttt cttcaaaact tttagcattt
     3361 aataagctta aagcaagtat taaaacgctt attatttttt tcatttattc tcctttttat
     3421 tttttaaaat tataccctac taaataaaat ttagcttttt tgctataatt tgcaaaaaca
     3481 ctcaaatagg actagcattg cttagcaata acgaatactt tgaatatttt attgattttg
     3541 tgaaaaataa cgacaaacga gaaatcttaa aagaatttgg cggtgcaaat atttacatac
     3601 caagctataa aaccttactt agagatgaag aattaaaaca ggattttaaa acactcataa
     3661 aacagggaat aagcactaaa aatgcaagtg tggaatgtgc taaaaaatac gatttaagtt
     3721 taaatgcggt gtatttaatc actaaagaat tgagagaaaa tttagaacca agtttgtttt
     3781 agctctcaaa ctccacgcta attatataag cttggtcatt aaaactatga ctcacgcttt
     3841 taatactaaa ttcataatga tccatattaa tatctttaat cttaagtttt ccacctgctc
     3901 ttatttcacg cccaataagc tcacatcttc catttaatcc acctttttga agctcattga
     3961 gttttgcttg tgctttttta aaagcttcat tatcattttt tggttgtgag atttgcattt
     4021 tatatatatt ctccccactt cctactttta tgctttttat ctttgcctca tttatatctt
     4081 gccattctgc tattacggcg ctatattcat ttctagcact ttctgaaatt tctaatgaaa
     4141 tacattcttt taaagctatt tcaaataagg gtaaattttc attcttgctt gtgatattag
     4201 cagcattatc gccaatctta ccatcttttg gagtaatgat taaagtattt tcttttacac
     4261 agcaaataaa accataatca aagcatatac tatataagaa ttctaaatta ctttgattat
     4321 tttgtaaaat acttactata ttttgatcct ctccacttgt tttgattttt agattgtttt
     4381 catttgcgat ttttcttgct atggtaaaaa gagtagtgtt ttcaaagctt cttgtctttt
     4441 tctcttttat attaacgctg ccttttccac taaaattaat agcacttgct ctaacttcag
     4501 tagtatttga agtatagttt ttactcacta cattcacact aaagcttcca catttataaa
     4561 gcttttcaaa gccaagccaa agctctaaac tatccccaaa aagtggcttg gaataaagcc
     4621 caaaaacact taaacttatc tcatcacttt cagctttttc tttatcttca taactaatgc
     4681 taataagatt tttagaaagt ttttctgtga tatcctcacc tttggcaata agtttaaact
     4741 taggttttct taccataaag ccttttcctt gctttctttg atttcaatac taggtaaaat
     4801 cactttatcc cctgttttta aaagaggctc taatcttgga ttggctaata aaacttgatt
     4861 aaaatacaaa agtgtcccat aatgcttata gactatacta tcaagcctct cgttgttttt
     4921 agctatgtaa atcttactca tcaaaatccc tttctaaatc catgctaaag ctttgtgcta
     4981 caaagccact tccatctaca aatgcacttc tgttttcatt taaggataaa atcacaaatt
     5041 taccataata ctttccatta gctcctgtta agataaaaga tctttgttct tttgccatat
     5101 tctcaagctt atctaaataa gtatttctat ccccttttaa aggtaaagtt ttgccttgta
     5161 ttttaatctt ttcgctttct ttagaacttg caaataaagc attatgatta ttaagcctat
     5221 tttgactttg tatgttatat tctaagcttc tttctaaatt atcaaaattt aaagctttaa
     5281 actcaaattc tcctaaagct aaaaccattt aaactccttt ttagtttcat caagctaaaa
     5341 ttatcttaat tagataaggt tgatacctaa aatgtagtag taggatagtc caaattaatt
     5401 ggggtatgta ttgtgagtgc aagtctcacc gccttatctg atcttaatat atgtcttatt
     5461 atctttatta atcacttcta cttttcctaa tgtaactatt gcattggttt taccaaactt
     5521 ctttagctta taatcagggg taattacaat tttattgata cgactagcat cttttttatc
     5581 ttcaaagaaa tacaataaag aattatttgc attatcccaa taaacttctt ttgcttcatc
     5641 taaaacttta acaatttgct tgatttcatc cgcgcttaaa gcctgattat aacttgcctt
     5701 tcttttagga cttgcgtgta aaagattgtt tttgctcagt gtaaagtata agtcttctaa
     5761 gtctttttta ttaagttttt ctaaaaactc tttggtgctt ttatccattt tacctacttg
     5821 tatgaaattg ataggatatt tttgattatc tttgattaat acttcatcca ccatatcatc
     5881 taagcttttt tgccaagtgt aaagttcttt ttgatgagca aagcttttaa cttcttttgt
     5941 ttttttagcc gctgcactta acatatcaag ctttataaag ttttgaatga cttcagtgtt
     6001 tttttgttta taaagctcat ctaaaagctc ttcatcgtta aagccattaa attcgctttc
     6061 tttggtattt gaaggtggaa tttttaagtc tttaacttca ctttcgccta gatttataac
     6121 tttacaccta caaccataat catgcatggt tacatgtggg taatgagtat cccaaaaagg
     6181 atcatctttg ggtaaaacta tgctatcaaa ggctctgtgt ttgtccctaa ccaaagaatc
     6241 tttttgggtg cagtatttaa aataaggttt agtgcttttc atttgatttt catagatagt
     6301 tttagcttta gcttttcttg agttttcctc aaagattttt tttaatcttg cactattaaa
     6361 atgagttttt ttaacttcac ctgttttagg gtttataact tcctttgaac cccaccaacc
     6421 tttagctttt aatttctcct ctgcaatctt actccaagtg ctaaatttat ccccattttt
     6481 aatagcattt actaaagtat cttgcatatc ttttaacaag ctttcatcca taagcttagc
     6541 aatagtaaag acttttttat gggttgaata tgaaagttca tcataatcaa aactaagctc
     6601 tggcttttta ttttttaaaa aatcaacagc tttagtaggt tctgaaaaaa atcctatttt
     6661 tgcacctgtc attttaatcc tccaagtatc ctaaaatact ggaattattt aaagctataa
     6721 aaagatgttt ttcaaactcg ctttgctcta aactagaaaa attttcttta agtttattga
     6781 gtgcctcgtt aaaatcttta caatctttta caatgctttc aaattgctct tgaaaaaact
     6841 ttgacatgct ctcatcgact tttaagtatt ctttttgttc taatcctttg tcaataaaat
     6901 cttcttcaaa gctctctaac tttactttgt tttcaaagac ttttttatca ttttctaaat
     6961 ctttaaagtc ttttttttct aaagtctctc ttataagctc accctctaca ttataagtgc
     7021 ttttaatgta ttcttcatca aagcaaaagc ccatgttaaa aagttttaaa tccctttcgc
     7081 aaagctcact ttttggttct gcttcgctaa aaaactgcac atagagttca tctttaaaat
     7141 gattgatttc tttgaaaaac ttaatggcac gatttaaaat aaaaagaact atttgtccat
     7201 cttgggcggc taaatctttt cttatttgat tatgtgactc agccgctgct aaagaacctc
     7261 cgcttacttg agaacttaaa ttagctccta aaaccacgct tcttatttga ttatctaagt
     7321 aatctattat ttcattataa tttgccttag cctttggctg gattaaatca agctcttctt
     7381 ctttatcaat gaccgcacta tcgccattta acatttgatg aatttcagaa gctagtgcat
     7441 caggatcgct atctgttttt gcaactgccc aaggagaacc aaatctttct aaaaactcca
     7501 tccaaaactt taaacttgca tttttaagct ttactggaaa ataaagcttt gttaataagg
     7561 catcgccatt tttaaataaa aaattagagc caaaaagtcc ataaattgct tttttatctt
     7621 ccacaatttc ttcgcaacca ttgccattat aaactaactc atcattttca ttaaagccaa
     7681 aatttctaaa atctctttgt tttaagattg gatagtaaaa accatctttt aacttgtaat
     7741 taacttcaaa tatattaagc ccataaagat aggtttctaa gatttgactt aataaatcag
     7801 gattgaaaag atactcaaag ctttctttta ttttttcgtt ttcacaaacg atttgaagct
     7861 cttttgctaa aatcacactc cttcgtgatt gatgagcttg agtaaagctt agatctttaa
     7921 aaatcattct ttgatcgttc tcgctgattt taagcacatt taaatagctt gagtttataa
     7981 gagtgtttat aagactattg ttttttaata tcacttctct tttggatttg atttcttttt
     8041 tcatattttt cctttaaaaa cgccttattc ttgaaacaga gttaaaatga tgctttcttc
     8101 ttttaatgct acttttagtt cttgctaata aaaatgctcc tgctaagcta tcaggtgcat
     8161 catcattttt cccttctgga aattctaaaa gttgatttat aagcatagtt tggcttttat
     8221 gtaaaaaaag ctcttcattt tcaaaagcaa ggcttaagct ctcaatgcgt tcaaacttgc
     8281 taacgctatt atttttacca cgcaaaggca aaaaaactcc actttctaag cttttttctt
     8341 gtaaccattt ttttaagaaa aattgaccgc cattagtttc aatttcaatc aagcgacatt
     8401 tataaatctt ttgaagatta aaaatggttt ttataatgct ttgtgctttt aagattttta
     8461 cgatgctttc tgctacataa aaaccctttg cacctttgcc aataatggta atcgcagtaa
     8521 agtcgctttt tgctttttcc cctgctgggt caatatacat ataatactga ctaattggtg
     8581 gtaaaacatc ataaaagtta atgctatcaa gactaaagat ttgattttca cttcttggat
     8641 tattgagttg ctctttatta aaagctttta gattttcagc ccttaacttc attaaatcct
     8701 ctaagctttt ggcttcttcc caaagaacct tagctccttt atccattaaa gctttatttt
     8761 ttaaataaaa ttgatgagcg gtattaaaat cagtatttct ataaagcgtg gcgtattcat
     8821 cccataaatc aagcctttgt ggaaactctt cgatggaacg gaagacttta ggattccaaa
     8881 aaccaagctt taattttcta gataacacgc tatcattatg taaaatggtt ccaatataaa
     8941 gcacatctaa acttccatct gcactcccta agtttaaaac cgcttcatcc acccaatctt
     9001 ctaatttatc cctttgatct ttactcctga cattagtatc attttctaaa tcatctaaaa
     9061 taactaaatc aggtctttta accccatatc taaccccacg aagtcttttt ccactgccaa
     9121 aggctttaat ctttacgcca ttattactta caaactctcc tacgcgccaa gtcttgccaa
     9181 ttcctactac ttcgggaaaa tcaagcttta aatgcggatt accttcaagc tctgctttaa
     9241 tagcttcaag cattccttcc ataagttcga ccgcatctga aatctctact ataaagcttt
     9301 tataattaaa aactaagcac cacaaaggaa agagttgtga agtgtaggtg gatttaccat
     9361 gagctcttgg tgcagctatg gcgtgttttt cacctttgct ttctttttta agtgcgattt
     9421 ttgtaaaaac ttcatttaag tgcaaatgta agccacattc tcctttaatg gtaaaataat
     9481 gcggaaaata agttcttgca aaataatcaa aatccacact cgctctttta attctttctt
     9541 cttttaaagt aggatctaaa tggctttcat gcaaaaattg agtttttaat tcatttttta
     9601 gctcatccat ccattctaaa aagtcttttc tttgcatagc accttttagt tcatttggag
     9661 tgttttcgtg cttttgttcg tttgagatta aaaactcatc gagttcttct ttggaaaaaa
     9721 gcattaaata tccattgcta aaatttcttt ttctatcact ccactttcta aaagtgatac
     9781 aagttttgct acgcaatctt tatcattttt taaatgactt atgataattt caaccacttt
     9841 tttagcaaca tttaaacgat agctacttgg atcttctaat cttgcaacct ttctcatttt
     9901 tgaaaagcta tcgcctatcc ttgcaatggc ttcagttttc ttttctgcat tcattttttc
     9961 atcagtattt atattttcaa tcgcacaaaa catttgctca gtaaaacttt catataatga
    10021 ggcactttct ttatctttta tttttgaagt taaaagatta gctttttgct tatcccaatc
    10081 gccatctttg gctttgtagt ttctaatcgt tttttcattg cggtttaaaa tttttgcaat
    10141 tttaaatata tcaaaacctg caatataaag ttcttttgct aaatctttta agttgttttg
    10201 agacttcgcg gatgaagtaa atttatcctt acgagcagga gtttcactct ctgcacccac
    10261 ctgaaggcca cacccgacct ttgccatctt aggctttgtg gtggaagtta aatttttagc
    10321 catttaatct ccttaaatcc attctttttc ttttaatttt aaacgctcta actttgtttt
    10381 gtgagataaa gttatcttcg ttgatttcag ttggaatttt tttatttgcc atttttaaaa
    10441 gtaaatcatt agcccactct ctaatctctt ttaagctttc ttttggaaaa tcatttcggc
    10501 gttttaattc cataattgta agctttacac agatatcttt taaaagagga gttgggtttt
    10561 taggtatctt tataaaactt gcaatataac tttgtgcatc attaatagca tcatcaatca
    10621 cttctttatc acaaacccca tcagcattta aatcgctaag ctctgctatg gcatgaacgc
    10681 ttaattcttt gattaaatcc ttttcatcta tcataaaaaa atgcgtttta gtttctgtga
    10741 taagcttttc ttctaaaatg tcttgataat tcatttaaaa aacctttttt taatgtggtt
    10801 aaaatatggt taaaatcgtt taaaatcttt ttctaatatc tttttagctt taaaagcatt
    10861 ttttgccttt aaagctaaaa ttgtgcgttt tactctaaaa caagcttaat aagtccattt
    10921 ggtctggtgc aaactggcat ggctctcatt tcgcctacaa tttcaattcc agccccacga
    10981 ggtaaaatct caggcttaga aacaaacatt aaacttggtg cttttcctaa agcatcagta
    11041 tgatttgctc ttgtataata aatgcgatta gaattatcct ttggcacaac cataccctca
    11101 gtgcctttta aaaattcaac gctttttcca tttgtatttt tatattttgc actataacgg
    11161 cgatatttgg tgccatataa aattaaggac ttatcttttt catccctact tgcaagatga
    11221 tttttataaa gatcttcact taatgccaag ttagaaatag ccgcaaaaag ttcatttcca
    11281 caaagcactt cataatcagc acttgttcca aattcatcaa taattgctga atcaatcgca
    11341 tcacaaacgc tggctaaagt cacactccca tcttttttaa cactaatagc tttcttactt
    11401 gcacttccaa aatcaaaaag cacatttcct ttgccatcta aaatcttgcc aaataaagca
    11461 ccatttgcca tatattcaag cgtagtgtta aagctttctt tcatttcttt aaccaaaacc
    11521 ccaagagctc cacttaagct tttagcctga gcttcttgca atgctaaaga ccttaaagaa
    11581 ttaatctcac tcgcactgat tctttttgct aatgcaaagc gtggtaaagg tatatttaaa
    11641 atataagcgt ctttagtatt ttctaaagaa tgttccccat tatctgaaat gctatttaaa
    11701 acaattccag caccttttat aatttcaacc cttacggtgc tctctaaact tgggatttta
    11761 tccttaaaaa aagtatcact tacaaagcga ggtgaagctt tggtttgatt aataacttca
    11821 gttatttttg tacttgaaaa aagttccaaa agttgctcta aatccatttt tactccttag
    11881 tattaataat taaattttgc ataaaagcct ttttaaccgc acttacatga acgcctttta
    11941 aattgatttc tcctgctaat aaaaccccat aaacgccgga tcttaaagcg tgatctttaa
    12001 gcattgctaa tttaacattt tcttttgcac taatatcttc atttggacat tttttaaagc
    12061 tttctccaaa atcttcgctg attaaaagcg ttccaagagc taagctttca ttagtttcaa
    12121 gatctatttt cgcattaatt gaaaacaaat ctttattgat aaaactttca aggctttttg
    12181 gcatagcaat taaaggatca ttgcttaagc tttttggtgt gacctttgat ggcatttctt
    12241 ctccttcttc atttataaat tccttagcgg tttcattttc actcacagct tcttcattag
    12301 ctaggttctc atcttctaaa gacaaagctt tagataagtc tccagtttcc aagtcttcat
    12361 tttctaggtt ttgggtttct tttttagctt tagccatttt taatccccta acatcatttt
    12421 cacaacatca aactcattag tttttgctgt gtttttattt gcaaaaacat tattttttgg
    12481 aacttgcact tgatcattct cggtatctaa aaagctttta aagccttcta aatccttaca
    12541 agcatacatt agcgcccatt ctttttggga attagcaatt tttccgctat ttaaagcatt
    12601 atcaactaaa gagcttgcta agtttttaac gctttcttcg ttttgttttt ttaaagcttc
    12661 attttgtaaa gcgagcgagc tattttcatt ttttaaagct ataatctgag attctagctc
    12721 tttgattttt tcatccattt tctctccttt gttttgatga atattatttt tgttagcaat
    12781 gagttcgcct agctcatcaa taaatggcgt attagttagt gcgactgagt gaagcttagc
    12841 tcttactagt tctccacttt tattgtcttt tgaattaaat tcaaacacag gggataaata
    12901 gcggtattgc ttatttgcta tatatttttt agcctcttcg ttaaactcag ccttagccat
    12961 taaggcatca ttttccaaat aaagctcttt aatccaacct gcagcaggtg ctttttcatt
    13021 ttttaagctt tgatgctcat agtcaataac caaatcaatc tttttttgat taaaattatc
    13081 aatcattgag tttaaatctt tatcatcaac cttaaacctg ccattattat gccctttcca
    13141 ctcaccctta attgccactt ttatgggctt atcattgcta acttcgacta aattttcttt
    13201 attgataaaa agcattttaa atccttaaaa aatcatcttt tggtaaaaag ctactttgca
    13261 aagttcttgc ataaatgctt aaatagccat gatcgcttat tccttcgtaa acctttttaa
    13321 gatctttaag ctctattcta aaaccattgc taggttctgc atttaaaagc actttatcaa
    13381 cagcttctat tgcatcaaat aatttatgct tagcatcaat tctgtgttta ggagcttttg
    13441 attttgtatg ggttaaaata taaagtttcc aagttcccac tttattttct aaatctttat
    13501 aactttctcc ttcaaaatca agcaaaagcg aagcatctaa attattaata caacttgcta
    13561 tgttttgggt gtcttcaaac tcgcctaaat acattcttac tttaaaatct tttaatagtt
    13621 ctaaaagctc attttcaaaa cttttaagca tttttcatcc tttaaaaatt agcggcaatt
    13681 ttaaaatgag ttcttttttt aatcaagcaa attatttttt caaagagttt tagcacaaaa
    13741 tttttctagt ttttgggtca gctttttaac taaacttacg acattttaaa ggagtgaaaa
    13801 tgaaaaataa cccttatttt aaagaaagcg aatttaaatg taaatgcggt aaatgtgaat
    13861 tgcctcaaaa tgtaccaagt gatgagctta tagacattct ttgtgaaatc agagaacatt
    13921 acaatgctcc tattattata aatagtggat atcgctgcaa agagcataat gcagaggttg
    13981 gtggagcccc taaaagccaa cacactatag gaagtgcagc agactttgtg gttaaaggag
    14041 ttaaaacaga agaagttcat caatatgttt taaacaccta tggcgaaagg agcttgggaa
    14101 ttgccataaa gcataatttt aatgatcctt atgctgggtt tgtacattta gacactagag
    14161 gcaaaaaagc aagatggact tatccataag gaaaagattg tgtttagttt tattttatca
    14221 aggtttttaa gtccttcaaa aatagctttt tttgttctaa ttgctctttg tggtttttta
    14281 tatttaaaaa acaatgcttt agctttagaa aatgaaaatc taaaacttaa agctttgcat
    14341 tttagcaatg aaatcaatgt ttttaaagat aaattagccc agcaaaataa agctattgat
    14401 aaattaaaac ttgatttaaa gcccaaagag actttaaaag aagttttaaa agtggataag
    14461 gtttttatta aagataaaag ctgccagagt gaacttaaag cttataaaga attatttaat
    14521 attttaggag caaaaaagtg aatgataaaa tgagaatttt cctattaatt ataccttttg
    14581 tttttttaag cgcttgtgct tctaaagata ttttgattaa aactgaaatc aaagaagtta
    14641 aagttcctat taaatgccct ttaaaacttc ctttaaagcc tttagacaaa aaagacttag
    14701 aaagcgctaa agaaatctct aaatattact tagaagttga aaatatagcc aagctttgca
    14761 caggagagaa agatgaaaga aaataataaa atgataaatc aaaaaagcat tgcaaaagat
    14821 cttcttatag ctcttttgtt ttcaactttt gcattagctt tattatattt atttgaaatt
    14881 tttacaagga actagcaatg aaattagaag atatatttgt atatatggtt ttaatgatag
    14941 taagctttat agctggactt gtaggaattg taacaaaaaa taaattaagc aaagctctta
    15001 atttaaaagg taaatttaca ctctttttaa aaggtatgct aggctctatg tttgtggcat
    15061 atctagtttt tgaaattgta aattatctta attttggcat aaagcttagc gttgcagtgg
    15121 gtggttttgc agcttatatg gggacagatg cattgcttaa aattgagcaa cttgtagaaa
    15181 agttaattaa taaaaaaatg gaaaaactat aatgaacgaa cttggcatca tttgcgacat
    15241 taaagaaggt aaagctaagg ttgctattgg agatatggta acggattttt taagtgtttt
    15301 tcaaagtcta gctaattctt atgcagtgag cttttctcct ttaagaatag gagagcaagt
    15361 attagtcata cctgtgcgtg gggatttaaa tagtggagtt attttgcgtg ggctttacca
    15421 agaaaaacat agagcaaaaa acacagatga aaatactttt aatatagatt ttgaagatgg
    15481 aacgcattta gaatacaact ctaagagtag cactttaaaa cttgatgtgg ttaaaaatat
    15541 aaatatcact tgtgtagata aaaacaccca taaccaaaac aacaccttaa atactaaaaa
    15601 tcatactaca aacgctaata ccataacgct taacgctcca agtattaatt taaatggtaa
    15661 tactcaaatt gcaggagcaa tttctacaag tggcgaaggt ggggcaagtg gtacttttag
    15721 cataaaagga aatttaaact taattggtaa tttacaagtt agcggaaata taagcgatag
    15781 caaaggtgat ttaacaaatc atacccattc ttgtacttgt ggtgccacag cttcgccaag
    15841 ataggaaaaa ctatgaaaga attatttttg cttttatttt cattagtctt ttttatgctc
    15901 ttttgcatgg gggcatttta tgctttttta aacctaaact tttttatcaa aagcattttt
    15961 ataggctttt ttatagcttt tatgttttta ggattttcgc aaatgctaga aaacattttt
    16021 gaattttaca aaggtttaaa atgaattaca tggtaagcat cgaagaaagc attaaagaca
    16081 ttttaatcac tcctttaggc tcaagagtaa tgagacctga atatggttct ttactttata
    16141 cactcataga tagaaaaatc gatgatgatt ttaaaatcaa acttactaga tacactgcag
    16201 aagcaatttc aaagtgggaa aaaagagtaa agctaaaagg tgtgagactt aatgagtgta
    16261 aagacaataa attaagcatt accttgcttt ttgaaaatta tggggattta acaatggagc
    16321 taggcaaatg agtgagcttt taagtgtgaa tgatagctat tttaaacaaa gctttttaaa
    16381 agacattcct tatccacaaa tcatagaaga gcttgattat gaaaaacttt taaaagccta
    16441 tgaagaactt tttaaaagct ttttaaaaga taatgtagag cttttagaat ctgatccttt
    16501 taaagccatt ttagaagctt tagcttatag agaaatgata attagagcaa gaattaatga
    16561 gagtataaaa gcaacttatc ttcattatgc aaagggaagt gatttagata atgtagtagc
    16621 taatggctat ttgattgaaa gattaaaagg ggttaagccc acagctaaag tagagtttga
    16681 attaaatact ttacttactt atgatgtcat catcccaaaa ggtgcaattt tttcaaatga
    16741 aaaagcagac cttgccactt taaaagaaga agtggtgatt aaaaaagggc aaagtaaagc
    16801 acaaggtatt ttagaacttg atgaatttat tcaaagtaaa gaaagtaaaa ccgagttttt
    16861 acaaactcca ctgccttttg tagctaagat taaacaacta gaatttttca aaggtggagc
    16921 cagtgaagaa agcgatgagg ctttaagaga aagagccata atgagtgtac atcgcttttc
    16981 aaccgcagga agtgaaaaag gctatatcta tcacgcttta agcgcaagtg caaaagtagc
    17041 ttccataaaa gctttaaaca atggagcagg aaaagtaaga gttatcatta aaagtgaaga
    17101 tgaattaagc gttgatgtgg ttaaagagta tttaagtgca gatgagcgaa gacctttaac
    17161 tgatgaagtc agcgttgagt tagctaaaaa aagagagttt atcgtagatg ccaaactttt
    17221 gcttttagaa ttaagccgtg ctaatgaaat aagtgaaaag attaatgctt tgcaaaagga
    17281 ctttgattta agtgtggatt tagcactggg atttatttat aaatgtcttc atcaagacgg
    17341 agtttataaa agcgaaattt taagcattaa agaaaaaatc ataaatgaag aagagcaaga
    17401 attaaaagac ttgcccttag aaaatataat aatagctgat gatgagtttg caactcttag
    17461 cttttcactt agttatgaaa aggcggtgct atgaatacac taatactaaa ccaccatcca
    17521 aaacaaagca aagccattga tttaagtgct aaaacaagat ttgaagattt aaatttagct
    17581 agtatcacaa atctagctct aaattgcgat gaaagattat tgccaatttt agccaatgct
    17641 tatgatgtaa gtattgatgg tttaaatgaa aaagaatcaa gaaagcttat atctaaagcc
    17701 ttgcttttag atagatacaa cggcacaact tgggctataa aagaagcttt aagagccgta
    17761 tttcctactg cagtggttaa agagtggttt aattatggtg gaaagcctta tttttttaaa
    17821 gttaaagtaa gcacaactaa tgttagcttt gatgaaagaa cgcttaatac tttagaaaga
    17881 ctaatttatg attttaaaaa tgttagaagc gttttagaag caattgaaat agagattgaa
    17941 agtaaaaatg atagttttaa tgctaatgca caaataagtg gagaaactat agaaatctta
    18001 ccttttcaaa ccactttttt agaaaatgaa attaaaagca ctaaaaatgc atttggagtt
    18061 tttatgtgtg agatttcaag aactaatatt gattttaaag gagtgtatta atggcaaaaa
    18121 gtgaatacta taccatacta actaaaattg gcattgctaa atttattgcc gcaagagcaa
    18181 gtggaaatgg tatcaattta aaaagcttta aattaagttc aaaagttatt ttgcccagtg
    18241 aagaaatgca aagcttagaa gagattgtat atgaagctaa tattagtagc aaaagcgtgg
    18301 atgaaagcaa tccaaactat gtgaatttaa tgtgtcatgt gccaagcgat gtgggcgggt
    18361 ttgaagttaa tgcagtaggc gtttatgatg aagcaggaga tttgcttgca gttggaaatg
    18421 tcccacgcac ttataaacct atcttaaaag aaggcagtgc taaagagctt atgataaaaa
    18481 ttgtcatgga gctttctaat gcagaggaag ttattttaaa actagatcct agtgtgatta
    18541 tggcaagtcg tgattatgtg gatgctatta aagtggaact caatcttaaa attgatgctt
    18601 taacgcaaaa atatgatgca gagtttaaaa aagtatggga tgagctttct aaatatcttt
    18661 tagaaaataa atttaataca gaaattgcta aatatgttac tttagctact aatcaaacca
    18721 ttacaggagc taaaaacttt accaaactac ctacaagctc tataaaagct acaaatgaca
    18781 atcaatttgt aaatttagct accttaaaag aacaagctcc tagcttaata ggaggattgg
    18841 gagtaaatca agcttggcaa aatgtttcaa gagcctttga tgtaacttat acaaataata
    18901 caggaaaacc catagcagcc aaatttcaag ttaatgctag tgcaagtggg ggtatcagtt
    18961 tttcttgtag tgagcaattt gtagtttcta tgtttcaaac ttcattatcc aatggtggag
    19021 taagtcgaac ttattttggt tttggaatca ttccaccaaa tgggcaatac agattaaata
    19081 caccagaaca cagcggattt tacccaagca aaagcattgt atcttttatg gagcttagat
    19141 aagcatcaag caaataagga gaaaaaatga aatattttat agacaaaaac gataataatc
    19201 aaatttatgc ttatgaggat gaagtgagcg atgagcaaat taaaacaggc ttaacaccta
    19261 ttagcgaaga agaatttaac tctttaataa atcctcctaa aagcgaagaa gagcttttaa
    19321 acgaggcaaa agagttaaaa atcaacgaga ttaatacaaa aaaagaaaat attctaaatg
    19381 gtggattttc ttttaaaggt aaaatctacc aaagttctaa tgaagatcag ttaagaatta
    19441 atggagcagt aaccaatgct cttgttaatc ctaatttaat tccttatatt gattggattg
    19501 cgcttgataa ttcaactaca agatttagtg tggaagagtt taaactcttt gcaagtagca
    19561 tggcttattt tgtgcaagag actattttta aagcgagtgc tttaaaagaa aaagctagaa
    19621 atgcacaaag caaagaagaa cttgatttaa ttgtttggga gagtgaaaaa tgactaaaac
    19681 agaattaaaa agggtttgtg taaagcccta tgataaagac agatttgaag taattagtga
    19741 ttatgctttt tctttgccaa attacaaagg cattgtacca caaggcttta aaacagatgg
    19801 agcgagtatc ccacgccttt tttggtcttt gtttccacct tttaaaagtg agtattttag
    19861 tgcttgtgtg gtgcatgatt ttttatgcga aaaagcaaat tcaagaactg attataggac
    19921 agctgattta gcattaaaag aagctatgac tttgcttgga tgttcaagac ttaaaatctt
    19981 tgtattttat cattcttgca atctttatca cgcaataaaa tgcttgataa aaggaaaata
    20041 aaaaaaggtg agctacccac gcagtgggac gggggcttta gtaaaagcga ctttgggcgg
    20101 attttattcg cacaaagtga aagcataaaa aggagttaaa atgaaagatt atggaatttc
    20161 ttttattcca gatattaatc aaggctcaaa agagccaagt gaacctatag ttagtgataa
    20221 gcttaatgct caaaaagtta atgagcttat agataaaaaa ctaaagcttt ttaaagaaga
    20281 gcttgttaat aaagaggagc ttaaaagtct cattgaggaa attttacaag atcaaaattt
    20341 ccaaaataca aacataaaaa tatcaaaaac tccacctaac tacaatacac aagctaaagt
    20401 aggagaaatt tgggcggttt tagaaagtaa aaagcaatta tttatttgca ctgctaatga
    20461 taatgatttt acaagctggg ttgatttact aggagatggt agcaatgata ttatccctaa
    20521 agaaaaaatc attatcacat ttgataacac taccacaggt ggacaatatg ggggttgtat
    20581 gagtgattta agacttggtt ttgaaaatgg ttttgctact ccaaataaag ttcaagatga
    20641 atatgaaaac gcaaaattca ctatgactaa agatggcaat gggcttaata ggagtgattt
    20701 tactatagat tctaatccta ctcctacaga taatcaaatt gtaggaacga ttaaaacaag
    20761 tgggatttat caagaaacct atcacaaaat cgcccatgtg tttaaaaaat ataatggtgg
    20821 cgctgatgag tgttgcttat ggtctagttc aggaagtaga gaggtaagca tagaacttga
    20881 aaatacacca atgcctaata agctttttgc taggggtaat ggatattatg gtcaaacaga
    20941 aattaccaat gtaagagtaa aaaaatccat ttttataggt gagcaagaaa ttcaaagtga
    21001 agattttaat gttgaaaagt tagaagctag ttctgatact tatggagatt atgccttttt
    21061 atttgaaatt tctaaacaag atcaaattgt tatgaaaaaa gagcttaatt taaatcctaa
    21121 aaaaaacaaa aaatacaaaa aaatgtaaag aaataaggag tgaataatgg cagcaaatta
    21181 tggagttaat tttaatatta gcaatggtgc ggcaagtcct attaaagtgc aaagtgatac
    21241 gcctattggt attgcggcta gcttaaaagg tgcaagtaaa gaaatgattt acacaaaggc
    21301 tggttatgaa agcgtggaag ctatgccaat ctttgccttt tcaaatgtaa ataaagcaaa
    21361 agaatttgta aacgatttaa tcaaagaaaa taacttacaa gattttagac ttttagatac
    21421 tttagaatgt atcaatttac aaaatgtaag caatgttata atcgtcagct tttttgaaga
    21481 aagcgaggaa agtgaaaaca ctttaaccaa tattgttaat gccatagaag cctttaaaaa
    21541 agccaaacat aaaacaggct ttagtcctga tttaatcatt actccttatt actcacatga
    21601 agcaggagta aaggctaagc ttgaaagtgt ggcaagttct atgaatatca cagctattgt
    21661 ggatctttac gctacaaatg ttggcgaagc tattaataca atggaggctt ttagctctaa
    21721 aagattaatt gccacttggc cacaggttca aatcttaaac acacaaggaa aatacgctta
    21781 tgttccacaa tctcctatca tcgcaggttt aatagcccat acagatgggg ataaagaata
    21841 tggtttcagt gattcttact caaatagagt gatgaatggg gttactggca cagagcattt
    21901 tatagagttt atcaatggct ttgattgtga tgcagaaaga ttaagaaatg ctcatatttc
    21961 aacttgtatt ttaggtgaag gttatcgctc ttggggtggg gaaactagcc atgaagatac
    22021 gatttggcaa gatttagctc gtgtaagaac ttttgatcgt atagccctag caggacaaaa
    22081 agcagctttt aaggctattg ataaaaaagc aagtgaatta tattttataa aaatcagcat
    22141 tgaagaattg ctaagagatt taaaaggagc taaggtttta attggctatg aggtaagctg
    22201 ggatgaagaa agaaacacag atgccaatgt gagtgctggt aagttttatc taaatataaa
    22261 aatgatgaat aatccaatcg ttaaacaaat cactttagag ttcatctact ctgataaatg
    22321 ggcgagtgat ttgattaaaa ctattagtgc ggatagttaa taaattttta caaggagaaa
    22381 ataaaaatga aaagaataat tggcgaagtt atacaggaag gtaatattta tatagatggt
    22441 caaggttatc ttggagtggt tagaaattta aaattgcctg atatagaaca agagatgatt
    22501 gaaaccaaag gagttttagg agcaaattat agtagcgggg ttttaaagcc tttagaaatt
    22561 agctttaaat tagccgttgt tgatccagtg ctttatgcgg ctttctttca tactactttt
    22621 agcgagatta aagctccttt gctttttaga gaaagtgttc acaaaggtgg aaaaaactat
    22681 ggtattagta ctgagttttt aggagagttt ataagcataa gtgaaagtga tcatgaaagt
    22741 ggaaaagagg tggaagctga aattaaaatg gcagttcatt tttacatgca acgccgcaat
    22801 aacattccaa tcattaccta cgatcataaa aacactattt taatgataaa tggggtggat
    22861 atgatgagtg atgtaagaag caatttaacc ctttaaacac tgattaatcg gagtttaatt
    22921 aacaatactg ggattttagg attaaagttt ggcttcttgg gcattgcgta gcaatgggtg
    22981 gggaagcctt tagttgcttc ttaggcggaa ttacttccgc cataaagaag gataaaaagg
    23041 aaagaaaaat gaaagaaaaa ataatcaaac ttgaaaatgg cgaagaatta aaaatgagag
    23101 agccaaatgt gcgtgtgcta aaaaacgcca ctaataaagg tgaaaaagaa atggagcaaa
    23161 ctatttgtat gatagctgca cttaccaata agcaagaaag tgaaattgaa gatttgaatc
    23221 ttaaagattt taaagcttta caggacgctc ttaaagattt tttggtagaa gcaggagtta
    23281 tagcttagag gctatagctc ttataagtca tactttgcat tggggattaa atgaagtttt
    23341 agatttaagc ttagatgagt ttgaagaagc tttggaaatt tcaaaagaat ttttaaaggc
    23401 taagagtttt tgattgtttt atttttcaaa aaataaattt ttaaaatagc aaaaagaata
    23461 aaatctaaac ttattacaat tagccaagtg ggtaaaataa gcaataaagc aatgggtggc
    23521 ataatcatca ctaaaatagc agttatgata atgcttgcaa aataagaaaa aataaaaata
    23581 gccattgtat taaaaaaacc atcacttgca ctttgatagc ttatgtaaaa agcaggtatg
    23641 agcgttgtta ataataaggc aatatgtgaa attatatcat cgttaataaa ttttaaaact
    23701 ttcatagtaa agattttaaa atacaatcgc ttaaaaaggg ttgaatatgg aaaatgctgg
    23761 aagtattgga attggtgtta ttttaggact agcgattaaa aacgcaagtg cggttggcaa
    23821 ggtagttaaa gattttagca atttagaaaa aatagcagca aaaactaaac tcggcattag
    23881 tggattgcaa aaagaattaa acactcttaa actcaatgcc aatttaagag cggaattaaa
    23941 agctcaaaga aaaggtttgc aagatgagtt tttaagttta ggtaatgtta ttcgaggtgg
    24001 aattattggt aagggtttag gagaagctat cagctttgaa tctgctatgg ctgatgtgag
    24061 aaaggttgtg aattttgatg aaggcgatga tattaaaaaa atgagtgctg atatccttaa
    24121 gatgtctcaa actttacctg ttactgccaa tgagttagca gctatagctg ctgctggagg
    24181 acagattgga cttggttcaa aagatgtaag agaatttaca aatcttgtaa ctaaaatgaa
    24241 agtggcattt gatatgagcg ctgaagatgt gggagatagt gttgcgaaaa ttaaaaatat
    24301 tttaggcatt tctttaaaag acatggagga tttaggcgat agtattaata atctttcaga
    24361 taatagtgca tctaaggcta gagagattat tgatgttatg aaaagaactg cagctgctgg
    24421 aaagcaaata ggatttacta aagaacaaat tgcggcttta agctcttctt ttatatcttt
    24481 aggtaaggga cctgaagtag caggaacagc tattaatagt ctttaccgcg ttttagccac
    24541 agctgataat atgggaacta aaactgaatc tgcttttgca aagcttggta taagtggagc
    24601 atttttaaaa caagccagtt ttgatgatcc tcaaaaagct ttagatatgt ttttacaaag
    24661 aatttcaaaa ctagaccaaa aagaacaaat gggcgtttta gttgatattt ttggtcgtga
    24721 atttgcagat gatatggcaa ctcttgttgg agggcttgac acttataaag aagctttaaa
    24781 aaatgctggt gatgaagcaa aaaaaggctc tttacaaagg gaatttgata caagggctgc
    24841 taccactgaa aattctatta tattaatgaa aaatgctttt aattccttag ctgttaattt
    24901 aggttcggtt tttttacctg caatatcatg ggtgagtgct ggaatttctt atcttgttaa
    24961 tagtatcact tatattacag gacttgtccc tggtcttaat ggggttttag gaggacttat
    25021 agccactttt ttgctcgcca aacctgcagt cttggcttat gctattgcta aaaactatct
    25081 taaagattgc accattttac ttaaaagtgc tttgattaaa acaagaatac atcttttagc
    25141 ttttcgtaat tcttgtatat tatctaatat tactttaaaa gcaaaaaccg tcacaactac
    25201 tatttacaca acctccctta aagccttatc ttttgttgta ggtgggctta ataaagtttt
    25261 taaagccgta gctattggta ttagagtgtt aagcatggct atgatgagta atcccattgg
    25321 tcttatttta gggggcattg caatagtggc tgggcttatt attgcaaatt gggataaggt
    25381 taagtcttgg tttaaatctt ttatagaatg gcttaaacct gtttgggagc ctatatacaa
    25441 tgtcattaaa gcagtatttg ataaatgtgc ccttgtattt acaagtttta aagatattat
    25501 tatgagtgtt gcttctccat tagctgagtt tttaaattct atttggcaag gtgttggcga
    25561 tttcttttat agtatttttg gttctttatt tgattggttt gcttctaagc tttcttgggt
    25621 aggagatatg atctcatcta taagtggctt tataaaagat gctcttgatt ttgtagggct
    25681 tggagatgat gaagaagtta agataagcca aagtgaacaa aacaaagaaa aagtctttac
    25741 tacaaacact tataaagatg aattagctaa gacaaaaagt ataaatcata ctccaagctt
    25801 taataatggc aatatcaata taagtgttaa tggcactttt aacatagcga ctaaagatgg
    25861 caattttaat atgcaagaat ttgcaaatgc tatacaaaaa agtgtattcg acgctttaag
    25921 aaagcaagaa caaaacaaaa ttaacactac aatttatgga taaaatatga gtgaatatat
    25981 agaaataaaa gggcttgaaa acttttttaa agcttgtgat aaattaatag atatggataa
    26041 acacgggcaa agcattatgg cgggtgctgg agagagtata agaaatagca ttatagactc
    26101 ttttaaaaac gaacgcagta tttttaatgg aaaatggaaa agcttaaaac cagctaccat
    26161 aaaacaaaag ataaaagatg gtaagaataa aggaatttta aaaagagatg gagaattaag
    26221 caatgcttta aattggcaaa gcgaacctac taaaagtggc gtaaaagtct ttaataatat
    26281 acagactgaa aatggcttta aatatggtta tgttcatcaa tggggaaaca gaaaaagaaa
    26341 aattcctcaa agagcttttt tacccataga taataacaaa gtcttgcacc caagtataag
    26401 aagtgtgatt tataaagata ctaaggattt tattgaaaaa attgttaaga agtgacaata
    26461 tggggcattg catagcaagg aatggtcggg cgtggccttt agtgatgcga ctttttggaa
    26521 aatcgcaatt tttcaaaaag tgttagcaag aatggcaagg aagactaaag ccttcctttt
    26581 tctaaaaact agcaaaagca ttatagcttt atttttaaag actagctttt taaattttat
    26641 tttgaaagga gtttgtatga aaaataatac agacaaattt ctaaaaacta gcacacttat
    26701 taaacctaca agaactacac taaaagctcc gtttgcttgg gtgggtggta aaaactattt
    26761 agctaaagaa atcatcgctt taatgcctga gcataaaagc tatattgaag tttttggtgg
    26821 agctttaagt gttttttatc aaaaaagtgc ttcaaaaata gaagtcatta acgacattaa
    26881 cgacgagctt attaatttac atctttgtat aagaaataaa ccccaaagcc taacaaatgt
    26941 gcttaattct atgataataa gtagaaaaat ctttcatatg cttaaaaata aagaaattaa
    27001 gccaagaaat gacttagaaa gggctgcttt ttatttttat cttatcagta cttcttttgg
    27061 atcaagtatg ggacaatttg ctatgagtaa acaaagagca ccaaagagat tatgtaggga
    27121 ttttagctta catacaaaaa gacttaaaaa tgccagtatt gaaaataaaa gctttgaata
    27181 tattttaaaa gaatatgatt acaatgaagc tttattttat ttagatccac cttatgtagg
    27241 gactgagaat tattataaaa acacaggagg ttttgggcta aaagaacatg aacttttatg
    27301 taatttgctt aaaaatatca agggtaaatt tatgctttct tataatgatt gtgagcttat
    27361 aagagagctt tataaagatt ttaatattaa ggaattaaaa gtaaggtatt ctttaaataa
    27421 taatgtttta aaaagaaaag aaagtaaaga gcttttgatt atgaattttt aaaagctaag
    27481 agagtaaaaa tactctcttt tattttagga aagagcttaa aaactttaga gcttctttgc
    27541 taaaatcttt attgctttct tctagatact ctttatctaa aatagcaccg tattttaata
    27601 aaagtaaaat cgctccaaaa ttattatgag ttattgcata aaacataggt tcttcgccca
    27661 tgcattcttt agttgcactc ataccatttt taagatattc taaaacaagt tcattgttat
    27721 ggttgcaaat tgcgtttata aaagtcttgc taaaaccttt tttgatatct actattactt
    27781 tactcatctt atctcctttt gttttgataa gacaagatta gctttgcttg gctgaatgtg
    27841 tgctgttgtt tgacatcttt ttgaaatcaa tttgtattaa cccaatcttg caccacattt
    27901 aataaatgat tataatcact actcatggct tctttttgaa atttacttat ttcttctttg
    27961 cttacacctg ctttttttaa agccttgctt actcttgcta gaatactaaa agcattgcca
    28021 tcttcgccaa ctaatttcac ataaacatta ggatatttca tcttttctcc ttaaaattca
    28081 caaaaggtac tttttaattc gtatctttgt ttttcatcat tatatttaac tacaaatttt
    28141 ctacctataa tatatctttc aaacaaagga acttgtataa gacttttatc ttcattcatc
    28201 tcaaatcttt tagcgattga ataagagttt atgcccatat tataaatagt cataagctct
    28261 aatatattat ccctagcaag ataatctttt tcttttaaaa gctttttgta caaaatccta
    28321 aattcactct ctaaatcttg tatgattttt tcttttaatt ctttatcggt gtaatttttg
    28381 atatctttca tgtttatctc cttttttgat agaacaacct tgtgttttac actctctgtg
    28441 agattagctt ggcttagctt attgtgtgct gtcatagtct tgaaagttct ccaattacca
    28501 caccaattag caaaaaatct ccatttttat aaaatatatc ttcatataaa ggatttaaag
    28561 agtgtaaaat cactccatca tcttgtttta aaacttgttt tataaaaagt ccatctctag
    28621 tattaatcac acaaatgctt ttattcttaa aagttttatt tctatctatt acacaaatac
    28681 ttccatcttt tataagtggc tccatgcttt ctccatagca agtgataaac tcacattctt
    28741 tactaccaaa aaagtttaat agtttttcat ccataataag ctcagagcaa tctattaaat
    28801 catttattcc gccaccaccc aaactcgcat ttgttttata aagctttaaa attttatatt
    28861 tattctcaca ttctaattga tcttttgggg aacttccata gaagaaataa ttaatgctta
    28921 tattcctctc atttaaaaag tttaggattt gtggatatgg aatggagttt ctaaatttca
    28981 tagaattaaa agtatctggg tggataccta attctttagc tatatctttt gtttttaaat
    29041 ctcttttgcc ttcactcgca agtatatcct ttaacttttc aatcacttct tgcatttgca
    29101 ttttaaatcc tttgatttta acttcaaaga atttaaacat aaaatttcaa aaagcaatta
    29161 aaaacttttg atttgaaaga tttttaatat aagagcttga aaaatctaac ttcaagctct
    29221 ctaaattgat atttaaaaac atcttactaa gctatttttt taacaagatt tcataaaaaa
    29281 ttgcttcatt actttttaag ttttctatgt aactatcttc caaagcttaa tgccatagat
    29341 agttacatgc tatttttata taaaaagtgg ttaaactatg attatatagt gttttatggg
    29401 gatagttaca tcaataagaa aatataaaaa tactttaagt aaaaatgtaa ctatcctaga
    29461 gggtaaaaaa cacttttggg atataaaatt taaaatcaaa gctcgtgttt atccatcttt
    29521 taaacagcat ttaatcactt ttttgggaca aagcggacat tttgggatat ttgggatatt
    29581 ttacgcttta gattaggaaa gataaaaagt tatttttgta agctttaaaa tcctattatt
    29641 tgggattttt gctaaaatta tttagggata gttacatgtt ctttttaaaa taccccttac
    29701 agttttttct gcgatgaatc aatattgtta aaatcaacaa aatatttttt ttgaagctca
    29761 agatattttt ctttaaattc atctatactt ttgcttgtgt gaaaaatttt aacataagct
    29821 tcatcataac tcacgccatc aatatgcatc caacgagggt gtttagcatt ttcatccatc
    29881 cattgaaata aatttttaac ttctgattct ggtaattcat tgtttctaag cttatcttct
    29941 attgaaccct cgactaattc tattttatcg ctgaattttt tagaaatctt atacaaatct
    30001 atcaaatcat tacctaattc ttctctttgt ttttttgtaa gctcgggatt tccattttca
    30061 atactttcat ctcttatttt ggtaagtgtt tgcaaaggat tgtttccaaa atatctatta
    30121 aaagagctta gaggaaatac tatcatcttt atcaccttgg aataaatttt attctaaagt
    30181 aaatcggcaa aaatgatttt ttttaatatt tttactcata tatttaaaat ataaagcgca
    30241 agtcttctag cccttgaaaa aaatcttact taatcttcca aagtccttac aatcaaactt
    30301 ttaggtaaat taaaatgctc tataagttct ttctcttttt ctctcatttc tccattatca
    30361 ttttcatgat caaaacctaa caaatgaagc atagcgtgga taaaaagcaa gcttatttct
    30421 tcttcatagc tatgccctaa ctctttagcc ttttcttttg ccaaatccac attgatcaca
    30481 acagaaccca aaggcaaact ctcatcgata ttttcaagtg gaaaagaaag tacatcagtg
    30541 gttttatctt gttttctttg ctctaagtta atttcttgca tttctttact atccacaaag
    30601 acaagctcca catctttagg acttaaaaaa cttgctatag attctaaaaa atcacatttt
    30661 tcatcactta atatcataaa ccttccttaa tcaaatgata taaattttct atttcttcat
    30721 catcaaaaat cgcacaattt ttactactat aaaattgttt tagttttttc tcttcaaact
    30781 caaatcctaa agcacattga gaatgcgaag gtaaaaaagc ccttagcaat gtaatggaat
    30841 tttgaatttt ctcatcacag gcaaaacaaa aaaaatcttt atgcaatctt ccttcaaatt
    30901 ccaaaatttt taaataagca tcaacaataa cacgctttgg attttgtttt tcaaaccttt
    30961 tcacacactc atcaagtaaa tcaaaataaa aactatcaag ctcttccaca tcttttaaat
    31021 gcctatataa aagacggata aattcttgcc aaataagcat tttatccctt tgcataatcc
    31081 ataaaaatcc caaatgcaat acatctttaa gtcttggtaa aaaactagga ttttcttcta
    31141 aagcaaagtc gattttatag ccgcttaaaa tactagaatg tctaagtcca taaaaacgat
    31201 aagccttaat aagcatttta ggacttaaaa tataaacgat caaatcctca tctttaactt
    31261 tttgagtatg aagtataaag ccttgcatta aacaatttca ataccataag ccctaagtat
    31321 atcaaaagcg gatttttcta aattttcatc aaaacttgca cttaaatttt ggtgtaaaat
    31381 tatccttgca ttaggcttag caccaaaagc taaaataata ttacaaaaca cacaaatatg
    31441 agaaacaagc cctgcaaaat gaagttcttc ataatcactt ttttgtatga aattagctaa
    31501 ttctaagcta ccaaaagtat ttttataaaa aattttatga gctttttgta aaaaaggttc
    31561 aaattccttt ggcatttgcc aacccaaact ctctttaatg caatgtttta caggtaaatt
    31621 taaaccttct ttactttgta gataatgctc atcatgcgta tcataggtta aaagcaaatg
    31681 cgtgttatta aaatcgattt gatttaaggc tttaagaata ttttctttga tttttaaagc
    31741 cttatcaaaa cctaaacttc catcaataaa atcattttga taatccacta aaacaaaagc
    31801 ttttttcatg cttttatgcc ttttgaagcc aaaaactctc cgtgtgtaaa ttggcaaaag
    31861 cggtttttaa acttgtaaaa agcttaggat gatctttttc taaatttgct aaaagctgtt
    31921 tagcttcttc tctagcgtgt ggaaatttta catttttttc actgagtttc ataccaggac
    31981 aaaattcatt tcctatcacg ctaagttcat tttgcgtagc attatctcta agctgtcttt
    32041 cacgcacaaa aatcaaaggg cgtatcacag ttataccgcg tttgctttga taaataggtg
    32101 ctaaggttct taaagctcca ttatgaataa aattcataaa aaagctttct gctgcatcat
    32161 ctaaatgatg agctatagca agcttgttaa aacctttttc aagagcgtaa gtatataaag
    32221 ctccacgacg cattctcgaa aaataactac aaaaacttga attttctctt atggtatcgc
    32281 ctgaaacttc ataaatattt gaatcaagca cgctatgttt aatgccgtgt tcttcacaat
    32341 gtgcatgaag atgagaataa tcctcgccca taccataact caaagttacc gcttcaagtt
    32401 caaatttaaa aggagcgtga gcttgcatac gatttaaaag atgggctaaa gccaaagaat
    32461 ctttcccgcc actaagccct aaaagaaccc tatctccatc tttaataagt ccaaatttag
    32521 cattagcttg tgcaacttgg cgtatgagtt ttttgctaag atttatcata atttctcgca
    32581 cattttaagc acaaaattgg ctgaaatttt agctgaattg atcacaaact catcaaaatc
    32641 aaattcagcc ttttcccctg ctttatcact catagctctt aagataaaac aaggcacctt
    32701 taaagcatca caaaccaaag ccacacttgc gccttccatt tcacaagcat ccgcattgaa
    32761 aatttctcta atttttgctt tttttgcttc atcgcaaata aactcatcac ccgttgcaat
    32821 aatgcctgca cgaagtttga tatttaattc cttagcaact tctaaagcaa gattgtttaa
    32881 tttctcatcg gttttgataa aaatttcatt acctggaaca aaacccaaag gatgtccaaa
    32941 agcagtaata tcaagatcgt attgagctaa ttttgttgca taaagcaaat cgccaatttc
    33001 aagttcagga ttaaaagcac ctgcaactcc tgtaaaaagc aaagcttgtg cgccaaattt
    33061 ttctatcatc acactagcac taagagtaga atttaccttg ccaattttag aatacgctaa
    33121 aacaagttca tggtttttat actttgcaaa ataataagta ttgttagcgt gttctatttt
    33181 cgtataatct ttaagtgttt caagcaaagg agtgatttct tcactcatgg ctcctaaaat
    33241 tgctattttc atcatacaac ctttaaaaat tcatcaatat cattcatatt tgttaaagca
    33301 taagtttctt ttgaagtgat ttttttattc aaacccttaa gcacacttgc gccaaattct
    33361 atgaaataat ctacttcatt ttcacatgcc ttaatgcttt gtttataaag cacaggagag
    33421 ataagttgtg cttttaaaag ctcaagggct tcttctttgc ttgtataaat tttggcattt
    33481 gcattagaaa ttacggcttt aaaatttggt tttaacacct tttcaagctc cacacaaagc
    33541 ttagctgaag cattttccaa aagaggacaa tgacttgcca cgctcatatt taaaagcata
    33601 gctcttttag ctcctgcttc tttaaataca ctttcataac ttgctaaatc aggttttaaa
    33661 cctgctacaa cgatttgtcc atcgcagtta taatttgcag cgaaaatttg cttgttttct
    33721 ttttgtgctt tttgacaaag ctcttcaacc ttttcatcat caagccccaa aaccaccatc
    33781 atacctgctt caacttttgc acaatcttct tgcatgaaaa gccctctttt attgaccaaa
    33841 gaaagagcct ctaaaaaatc aaaagcacca ttgacagcta agactgaaaa ttctcccaaa
    33901 gaatgcccta aagcaaattt cgaacttaaa tcaggttttt tttcaagtaa aacactataa
    33961 gccattaagg aatttaaaac gatggcgggt tgagtaaatt cactttgatt gagtttttcg
    34021 ttttcttcaa aaagcaaatg tttaaaatca atcttacaaa aatcacttgc gttttgaagg
    34081 agttctttgg cttttataga gttttcataa aaatcttttc ccatgccaag actttgagag
    34141 ccttgacctg gaaatataaa cgcagcattc attaatgaca accgcaaccg ccgccaccac
    34201 agcaaccgcc gccaccatgt ccatgtccgt gatgatgatc gtgtccatgt ccgcttccac
    34261 aaccacaact atgacttcct gcgataatac ctgtaagaat ttcatcttca ctcgcagctc
    34321 tagcatctac gatatttaaa gaaaaaagca aatcacgacc tgcataagga tgattataat
    34381 caattgtcac atcattttca ccaatttctt ttacagttac acgaacggtt tcgccatttt
    34441 caccttcgcc aaaaagctcc atacctactt ttaaatcaat acctgcaaat tgctcttttg
    34501 gtaaagtttg aacggcattt tcatcgtatt cgcctaaacc tttttctttt ttaattacca
    34561 catcagcatt gctagggcaa tcaagcttca tcacttcttc ttctaagctt tctaaaatct
    34621 gacctttgcc taaaataaaa gaaataggtt gagaatataa atttgattct aaaacttcat
    34681 ttgtatttgc atcttttaac tcataaaaca ttgaaactac actatttttt tctatagcca
    34741 ttttatctcc ttaatttatt ttctattagg tgaagctttt gcttcgggtg aatttggata
    34801 attagttttt aaagctttat aaaaaccatt tgctgttttt gtatcacctg ttttatccaa
    34861 tgaaatggca gtatgatata aaagttttgg gaaataatct ccttttgtac tcaaagaaga
    34921 acttttttta taataaacaa tagcattgtt ataatttttt tgtttatact cgatctcccc
    34981 taaccaaaaa tttgctcttg caggtttata ctgctttgtt atgagaaaat ttaattttgc
    35041 tttggaatct tcaaaagcat ttttatcaac atcttttatc gctaattcta aaatttcatt
    35101 attttttttc tttttccaag attcatcaat ttgttttgct ttatcatctt gggtattttg
    35161 agtattattg ttttcaatgg tactatttga atctgtagtt gaaacaacaa cactaggtgt
    35221 aatagtttta acgcttaaat ttgcatcatt taattcgttt ttagaaacat aatttgcatt
    35281 aatagcatct actaaagaac taagttcggc taaaactttt tttacttgct tattattagc
    35341 ttcttgaatt tttctacttt cttcaacata agcctttaat ttttgaattt cactagtaaa
    35401 attattttca atattttgat tattctcttc aacttgactt aatctagaat ttgatttggc
    35461 atattgagaa tttatacctt ctaaagtgct ttgtaaaccc tcgattcttt cgttaatttc
    35521 attaattcta gcatttgttt gtatattttc attatttaaa ttatctaact tttctttaaa
    35581 taatttttca tttgaagtta aaccataaga agaattgctt gttatatctc ctgcaccaaa
    35641 agctgagctt tctgcataaa gtaaagtagc tccaagaaga gctactgtga atattttttt
    35701 cattaattat cttgataatt taaattcagc acgtctattt tgcgcatcgc aagctttagt
    35761 tttttcagtg cacacaggat ttgtttctcc atagctttta acagcaattc tatcagcatt
    35821 tacaccttta gcgattaaag cttcttttac agcttttgct ctttttaaac ctagagcttg
    35881 gttatattca tcggttcccc actcatcgca gtttccttca acagtaatac ttacaccgct
    35941 tacttcagtg ttaaaaatat tagcatttgt gcttacaaca ttttgcatat caggacgaat
    36001 gttgaattta tcaaaatcaa aatatacttt atttaaagta tcattaagtt gagaaatttt
    36061 tgaatcaata tcccaaccat cacttccacc tgaaccacga tttgaatcaa cactactatc
    36121 accgcttacg ctagtgcttt ttgtgctaca accactaata acaactgcaa gagctgcgat
    36181 tgaagtaaaa agaatttttt tcatttatga cctttcaaag ttaataaatt cttattatta
    36241 tatctaattt ttaattaatt ttaacctaaa attgaaattt ttaccaatca attgattgaa
    36301 tttttccaac cctaagagga aaataaaaag tcttatttgc atttacacga ataacaccca
    36361 aagcactttg cgcacctaaa tatttgataa atactatact tccaccatca ctagaaaatc
    36421 ttggaaataa attttttcca tttgctgtaa gttgacgaat ataatcacta ttaattgaca
    36481 tcaaataaat attaaaaaca cctgcttgat ttggttcacg acttgaataa accaaaaaat
    36541 ctttataagt cgaaacagcc gaattgtttc taccatgaaa aacaacttgt tcagcactat
    36601 tgctatttaa atcttgcata aaaatattag gatatcctaa acgatcgctt acaaatacca
    36661 ctttactatc atctgagcca ataaaatttc cattaacatc aataccagaa taattagtta
    36721 attgtgttag atttttggta tttaagtcat ataaataaac atcaggctga tcttttggag
    36781 ccatggtaac aagtagttta cttccatcta cattcacatc acttgctaca accataccgc
    36841 cacttgataa aattttacta gctttattgg tatttaaatc ataacggtat aaagttggct
    36901 tatcatgatc ataagctgta taataaaata gagtttgttc tttatttccc cattttggaa
    36961 ataaattaag tccaccatca acaataactt tttgataagt taaagtataa tcagccataa
    37021 taatttgact ttttttagag ctagaatttc tcgcgatcaa aattttatga tccatccaat
    37081 caacaggtgc aagtcctaac gcatttacag aagctttgac acttttatgt gccaaaaatg
    37141 gatattgctc taaaccattt aaagtataag tttgctctga cttatcagaa ccgccagctt
    37201 ttatttttac atttaaactc aaagtgttac catttttatt taaagtgtat tcaaaaatat
    37261 aattacttgt ctcagttgca ttagcaacaa cttcaaagtt tgaacttact ttcaaatcgt
    37321 tcacaatgat attataaaag cttttcttta aattctcatc acttaaattt gaattgtctt
    37381 taacaataat ctttggtaaa actacaccag aattaacaac atcaatcact ggatcttctg
    37441 cccaaagact tcctaaaaag actaaaaaaa ttgctacaat ttttttcatt tttttctcct
    37501 aatcattttt aacttttact tcatctctta aattcatggt aatgcttata tttttatttt
    37561 gcggaggata agtaataaat ttaccttttt gactttctaa aaattcagcc actttagcat
    37621 catataaagg attcccactt ttttcaactg aagtatagcc aaattttcca ttttcatcaa
    37681 taaaaatttt taccttaaca gaaatttttt cactatttgg ataatactga gtccatcttt
    37741 gagtgataat acgcacaact ttccctaaaa attcatcata aattccaatc ttttgcgcct
    37801 ttgtgctttc gccttgcgtt gaactttctt cttgaagtaa actatcatta agttgtttta
    37861 caagttcaga agcttgaggt tttggggcac tagaaattcc tgatttagca cttgattgaa
    37921 tttttgtagt cttttcttct tgtatttctt taatatttcc aaaaagctca ttaaaattac
    37981 ttgccttttg gtcaatatct tcagttttaa ctgttttatt tgtagtctga gcaaaaagct
    38041 tttctatatc aatttgctct gttggttttt gtatttcttt aggagtgttg ctttgagtaa
    38101 taacttgttt tgatggttca gcaagttcaa tatctacaaa actatctttt atatcagtat
    38161 attgtatagc aggttcaacc tcgcttacaa gtctaaaaaa aacaagaatt actatactaa
    38221 tatatattgc taaagcaagt aaaaacgaat ttaaattact caaaccataa tttttcatga
    38281 ttattcagtc tgtaaagcaa ctttattaaa tcctaaattt tttacacttc ttaagactga
    38341 aataacatcg tcatatttta agcttttatc agcgcgtata aaaaccggat cttcggtatt
    38401 aaattgtgct tttctttgag caagattgtc agcaaaactt ataaaatcgt atttttcttg
    38461 atttaaaaaa atttcttttt ttgcattaat actaataatt aaactcttaa cagttggagt
    38521 gctggtattt ttttgactac cttgtggaag attaattttt tcttcataag taatgcttgg
    38581 agctgttacc attaaaatcg caagcaatac aagcataata tctactaaag gtgtgatatt
    38641 aagttcaggt ttttcatcat caaatggcat ttttaacctt atttactcga acttataact
    38701 ttaatctcgc tatcaataat gcttaaaagt tcaaaagctt ttcttttaat gatgagatga
    38761 aatgtataag caggaattgc tactaaaata ccacaacctg tagcaactaa agcctcgctg
    38821 attttaggag ctatgatact taaagaattt tgagttccaa gcccaccaaa agtttcaagt
    38881 atagaaataa ctgtcccaaa aagacctata aaaggtgaag ttgaagcaat aatactaagc
    38941 caagtaagtc cagcagaagc gcggcgactt gctaaatttt tatagatttc taaatgattt
    39001 gaagttgtat cattacattt tcttaaaatc gaatcagtac gacttaaatc cttctcaccc
    39061 aagagcaaag tttctaaact ttctttttct ttatttctcc atgtagccaa ataagtcaat
    39121 ctagcaaaca aaatactaaa tgctaaaata aaatataaag aaagccataa taaaactata
    39181 taagtaataa tacttgaact attgaaaaaa tgaaatatag cttcaaaatt cattaatgca
    39241 tccttgcatt atcaagtttt gaaaaagttg ctgctaaagc tgcattatca gaactcatag
    39301 atttaatcaa atcttttgct tgagcaagat ttttttcaat ctcactttca tcacttccac
    39361 aaacccaaac cgcacccttt gctaacacgc aaatcttatc ttcatctacc tttgcatgtc
    39421 cagcatcaat agcaattaat tcatggttta aatcagcttt ttcaatatca attactccag
    39481 attttaaaga agaaaccaaa gcagcatgtc ctttaagcac gccaaattct ccttcactac
    39541 ccggtaaagt aacagatttt acttctcctt gatagattac acccaaaggc gtaactatct
    39601 cgaaattaat caaatcgttc ataaattaac cttttaattt atccgctttt gcaatagctt
    39661 catctatatt tccaaccata tagaaagcat tttctggtaa atgatcatat ttaccttcta
    39721 aaattccctt aaatcctgct attgtatctt caaggcttat atattttcct gggctacctg
    39781 tgaaaacttc tgcaacgaaa aatggttgtg ataagaattt ttcaatcttt cttgctcttt
    39841 caactacaag tttatcctct tcgctaagct catccatacc taaaatggcg atgatatctt
    39901 gtaaatcttt gtatttttga agcactgatt gaacaccacg agcaacttta taatgttctt
    39961 ctccaatgat atttgggtca agcattcttg aagttgagtc aagtgggtca actgcaggat
    40021 aaataccctt ttcagcaata gctctattta aaaccgttgt agcatctaag tgagcaaaaa
    40081 cagttgctgg agctgggtct gttaagtcat cagctggaac gtaaacagct tgaactgaag
    40141 tgattgagcc ttttttagtt gaagtaattc tttcttggaa tttacccatt tcacttgcta
    40201 aggttggttg ataacccaca gctgatggaa ttcttcctaa aagtgctgac atttcagaac
    40261 ctgattgtga aaatctaaag atattatcaa taaacataag cacatcaaga cccatttcat
    40321 ctctaaaata ctcagccatt gttaaacctg ttaaagcaat acgatttctt gcccctggtg
    40381 gttcattcat ttgtccataa catagagcaa ctttgtctaa aacattactt tctttcattt
    40441 cattataaag gtcatttcct tcacgagttc tctcacccac acctgcaaat acagaatagc
    40501 cgctatgctt aaatgcaaca ttgtgaataa gctccataat aataacagtt ttaccaacac
    40561 ctgcaccacc aaaaagacct actttaccac cttttgcata aggagcaagt aaatctacaa
    40621 ctttaatccc tgtttcaaaa atctcacttt ttgtgctttg atcttcaaaa gctggtggat
    40681 ctctatgaat tgcccatttt ttatcgaaag aaatttcttc accttcatcg atcaaatctc
    40741 cagtaacatt gaaaattctt cctaaaactt tctcaccaac aggaacacta atgggagcac
    40801 ctaaagcctc agcttttaag ccccttacca aaccatctgt catatccata gcaatagttc
    40861 taactctatt atctcctaaa tgagctgcta cttctaaaac aagtttatgt ttttttcctt
    40921 cgctttcaaa atttacaaca attgcttcat taatttgagg caaatagtcg ttaaaatcta
    40981 catcaacaac cggacctaat acctgtgaaa taaatccttg cattatttat cttctcctta
    41041 aaattttact atttcattga ttcaacacca ctgataatct ctataagctc agtagtaatg
    41101 gattcttgtc ttgctttgtt ataagctaaa tttagttgtt tcactcttgc ctttgcgtta
    41161 ttagttgcat tatccatagc ttgcattctt gcgctatgct ctgccgccaa agaatcgatt
    41221 aacgcataat acatattata ctcaaaatac gttttcatta aatcttttaa aagctcagtt
    41281 ccttccggtt caagctctaa aagagaatta tgagtctgtt caatactctt tggctcaact
    41341 ggaataagat gattaatttt aagttcttgc gtaatcatat ttttataacc attatgaact
    41401 aaaatcactt catctgtatt tccatttaaa aaatcatcta cagcagcatg aattacttca
    41461 catgctttct cataatcagg actagaacta agatggaaat atttctctaa caattctatt
    41521 ttttgaaaat taaaatattc aatcccagtt ttacctatag ctctaagacg aatattaata
    41581 ttttttgctt catattcttt tagcatttca cttactgttt ttaaagtctt aatattaaaa
    41641 ccaccgcata agcctttatc tgcagtgata aatattaaat ctacggtttt aatttgttct
    41701 tttttatgaa acaaagataa acgcacatca tcttcattgt gaacaatttt attgatctga
    41761 aatgaaattt cactcaaaat ttcatcgatt ttttgtgcat aaatttttga tcttttagct
    41821 gcttcttctg ctttttttaa cttagcagta gaaactagct tcatagcatt tgtagtcttt
    41881 tgagtgttat gaacactttt aatttttctt ttaatttctt ttaaattaga cataaaagac
    41941 cttataaatg atttgcttta aactcattaa tggctttagc tagtttttct tccaaatcag
    42001 aatctaaagc ttttttagag cgaatttgct caaaaatatc tggatgtttt gcctcaataa
    42061 aaggataaat tccatcttca aattccttaa ttctagaaac agcaatatca tctaagaaac
    42121 ctttggttcc tgcaaaaatt aaaactactt gtttttcaac gctaagcgga gaataaggtg
    42181 gttgttttaa aagttcaacc attctttgtc cacgttcaag ttgttttcta cttgcctcat
    42241 ctaaatcact agcaaattgt gcaaaagctt gaagctctct atattgagca aggtcaagtc
    42301 ttaatgtgcc tgaaacttgt tttgtagctt taatttgagc agccccacct acacgagata
    42361 ctgataaacc aacattaatt gcaggacgaa ttcctgagtt aaataaatca gtttctaaga
    42421 aaatttgtcc atctgtaatt gaaataacat tagttggaat ataagcagaa acatctcctg
    42481 cttgtgtttc aattatcggc aatgccgtca aagaaccagc acctaattca tcatttagct
    42541 tgcttgctct ttcaagcaat cttgaatgaa ggtaaaaaac atcacctgga taagcttcac
    42601 gacctggagg acgacgtaaa atcaaagaca tttcgcgata agctacagca tgcttgctca
    42661 aatcatcata aacaattaaa gcatgttttg cgttgtctct aaaaaattca cccatggtta
    42721 caccagtata tggagctaag tactgtaaag ccgcaggatc tgaagcaccg gcatttacaa
    42781 caatagtata ttccatagca ccatgttctt ctagtctttt aaccacttgt gccactgtac
    42841 tttgcttttg accaattgca acatatatac agataactcc ttgacctctt tgagatataa
    42901 tagtatcaac agcaacagta gttttacctg tttgtctatc acctatgata agctctcttt
    42961 gaccacgacc aattggcaca agcgcatcaa tagctttaat tcctgtatgt aaaggctcat
    43021 gaacactttt tctcgccata ataccttttg ctttttcttc aacaaaacga tattcattag
    43081 cattgatcac acctttagca tcaattggct cacctaaagc atttacaaca cggccaatca
    43141 aagcctcacc tactggaact ttaagtaatt tcttaagtct ttttacagaa gcaccttctt
    43201 ttaaaccttc tccttttcca agtataacaa tacctacact cgactcttca aggtttaagg
    43261 ccattccttt atcaccattt tcaaattcta ccatttctcc agccataata ttcttaagtc
    43321 catatacctt agcaacacca tcagctacag aaataatctt tcctgtttct tcaatttcaa
    43381 gatttaaatc aaaattttca attctttctt tgattattga actgatctca tcagctttaa
    43441 atttcattta ctttttctcc ttagataatt ttcaatatat attcgtttag cttattttga
    43501 agagctttca tagaaaaaga aagttcataa cctaattctt ctaattctat tttaacacta
    43561 tcatcttgac tgattttatt atttagttta atatttgcat caaatttttt gttaagtttg
    43621 acttcaagat cttt
//
LOCUS       DAPIWQ010000002        36882 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.002, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000002 DAPIWQ010000000
VERSION     DAPIWQ010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 36882)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36882)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36882
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.002"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            81..752
                     /locus_tag="RJ267_000064"
     CDS             81..752
                     /locus_tag="RJ267_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDV7387961.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIG
                     YKLIG"
     gene            749..1984
                     /locus_tag="RJ267_000065"
     CDS             749..1984
                     /locus_tag="RJ267_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDV7387962.1"
                     /translation="MTKNYSIHTKLIILFVVTFFLVCVLFIVLLKIEGNTYNEEESLK
                     QENLIKNLLISYENTSGVEIGAYLGNSGFNAIQNPNLVKAIRNNGQSLFKAGGELCTL
                     SSLKYHSNLYFDVQCKDFDGLYEENTSDRVYNLLLIGFFSFSLLVVFMYFSVLKSLEP
                     LKKLRRQVAEVANGEQPDFLDYQEDEVGKIAFEFQKAFKKNQELIQSRQLFLRTIMHE
                     LKTPIGKGRIISEMIKEDRQKERLIAIFLRMDSLINEFAKIENLFSKNYNLHFKPSRF
                     SAILEEAKEHLMIDDFNKVVKVDIRYDALINVDMEIFSVILKNLIDNALKYSNNGTCE
                     LFCCKECFTIKNPGKPLAEPIEHYLEAFTREKHNQVKGMGLGLYIVSEVCKLHNFDLI
                     YFYDDGKHCFKIFFGDKEK"
     gene            1984..2556
                     /gene="recR"
                     /locus_tag="RJ267_000066"
     CDS             1984..2556
                     /gene="recR"
                     /locus_tag="RJ267_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HDV7387963.1"
                     /translation="MVKGLEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKL
                     AHNIENAIRFIKPCEQCGALSENELCEICSDEERNKNILCIVESPKDILTLEESQSYN
                     GLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDATIFFIEDKFKGLNLTFS
                     KIAQGIPSGVNLENVDLISLNKAMNFRTKI"
     gene            complement(2553..3089)
                     /locus_tag="RJ267_000067"
     CDS             complement(2553..3089)
                     /locus_tag="RJ267_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HDV7387964.1"
                     /translation="MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFTHSEFTLDFVDG
                     GTLALQLSYIIARYDRLIVLDCIEAQGASIGDVFFFPYDAMPNKISWSGSAHEIEMLQ
                     TLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAKIMEKTLLDFLSKEGFAYE
                     KIADFSLQELADISYKNY"
     gene            complement(3086..3778)
                     /gene="cybH"
                     /locus_tag="RJ267_000068"
     CDS             complement(3086..3778)
                     /gene="cybH"
                     /locus_tag="RJ267_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HDV7387965.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAIAIVILIGTGYYLSYV
                     FQSPISNGEPVNFMQAKYRLVHQAVGFVLIACIIFKVYLFFCDKVSAKERRSVWDIFN
                     IKLWIEQVKFYIFLGKHPHLKGVYNPLQFVTYFFFYLVILGIILTGLILYTHTYHEGL
                     GGLLYHILRPLEAAMGGLADVRTYHRILMWVIMIFVPVHIYMAIFNAVKGKDGAMDAI
                     ISGYKFVKEEQH"
     gene            complement(3789..5504)
                     /locus_tag="RJ267_000069"
     CDS             complement(3789..5504)
                     /locus_tag="RJ267_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HDV7387966.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALSADVKKASDEAFKYTSNPYATGADKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLSPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDI
                     GVNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YDGKTNPNYTGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANVV
                     VNYAKGNQNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVE
                     NLKVDQSTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGVGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDTKGNNLSEYK
                     VNVNL"
     gene            complement(5507..6646)
                     /locus_tag="RJ267_000070"
     CDS             complement(5507..6646)
                     /locus_tag="RJ267_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HDV7387967.1"
                     /translation="MIDYHQIESRLSALEKLPSLKDNDSITKALEKSGFSRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVVWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLESAIQKHKNKYILMVEGGIPMGDTEHFLTIGAHGKT
                     GYELSKMASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVHAFGDEGAK
                     QGFCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPNFWDTMGPFEEPMA
                     SRKFDTVFGLGADSVSDKIGIGVLTLTGVAIAAHAVISSMQKDKE"
     gene            complement(6767..8608)
                     /gene="mnmC"
                     /locus_tag="RJ267_000071"
     CDS             complement(6767..8608)
                     /gene="mnmC"
                     /locus_tag="RJ267_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HDV7387968.1"
                     /translation="MKKAKLIFKDNTPFSLDFDDFYFNFKDGLNESKFVYTHSFEWKN
                     QENFIIAESGFGIGLNFFLTLKRFLETTPSKRPKKLFYISVEAFYIEKEQLREIYQKL
                     EFYEEFKELLEQFLKFYPKAKEGIYRFYFEDCFLDLVFEDIAVLKELDFKADVWYLDG
                     FSPNKNSQMFDENLIFEVARLSKKNTQICTFSSASFLQKNLKKYGFRVEKTKGFRKRE
                     MIKAYLENELEFKDKEAYFSRTFSSLKNKKVAIIGAGISSAVLAYELSLRGFEIDIFE
                     KHLELGKGASGNESGILSSLILKPKVNLGEFSELSFIEASRFYRQILDLEFKGVVEFA
                     HNDLMQERFDTQRENVLFKISKNQAFLEEGGVIFPKKLVKNLFEKSKACIYFNHEFQA
                     YKFENGCFSLKFKNDVVKSDYAVLIYAMGADAKDFVFYDEMKLSKVRGQVTHLKPFLD
                     TPFPLSSKAYICPVKDDLQVIGASYDRLNASLESKEEDDKQNIENIADFMDKNTKLEI
                     IGSKVGFRSYSSDRFMIVGNAYDEAFYKEEYKALLWTKNKEQKPAKMSCNLYFNFAHG
                     SRGFSTSVLAARYLCALINNEPLCLEKKYIHAIHPARFLIRKLKKGL"
     gene            complement(8605..10584)
                     /locus_tag="RJ267_000072"
     CDS             complement(8605..10584)
                     /locus_tag="RJ267_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HDV7387969.1"
                     /translation="MAKIFVFLVFVFTTLFGVYENELANFDKNFIGSKSEVQVKFHHQ
                     LKSLYIQSVINEDEKTKIEILKRLIISSNTLNLDDKSYANELKESGISETSINALRKA
                     VIKDIKVQNISQDTEKSTFEPIKTVQKNEKKSSNEQIKNTEKTNSKTSQAPKSSIVSK
                     AKSDDKIYVLKSSKTNQGVEFELNADLDKDQLKSFALDEKGNYRFISDFDGVLEGGKK
                     EFKFDDYRLVISQFNPKTIRIVVYAKEKIPIDISFKEEKIIFSKETTSQKKTEQVSKI
                     SEKKQDQKTEIKTKVLETKKQDKKTNNEKENQEPLYVLDVDKISNAVVLNLSDDLDEK
                     EIAVFDTKDQKFRYVVSFKGVLEGNRKSFTFGQNVITVTQYNPKTVRVVLSAPKEFKL
                     LKELDNNNLTLGFYIQTTNQNANKKATQSSSKTLNTNYKSGKLVVIDAGHGGKDSGAL
                     SDKKGSLKEKDIVLSTALKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLF
                     ISIHANAAPNATKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILN
                     FLNREKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGY
                     ITHPNEGKRIANKAFQDLLVKGIADGVESYFYNNR"
     gene            complement(10584..11675)
                     /locus_tag="RJ267_000073"
     CDS             complement(10584..11675)
                     /locus_tag="RJ267_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HDV7387970.1"
                     /translation="MNLQPLQIGKHTIKYPIFQGGMGLGISWDRLASAVSLNGGLGII
                     SSVGTGYYEERKYASKELNAKPYGSENFYSRKGLQALINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNVIVSGAGLPTNLPEFTADFPDVALVPIISSAKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLEKLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASEEFKSVLLASKEEDIELIKSPVGY
                     PARGVRTNLLNLVDKRMGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGANGYRLDKLISVKELMEKLVNGE"
     gene            complement(11672..12877)
                     /locus_tag="RJ267_000074"
     CDS             complement(11672..12877)
                     /locus_tag="RJ267_000074"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HDV7387971.1"
                     /translation="MDIKKILAEVKRGCAELIDEERIENLIKNYYEKGENFFIKAGFD
                     PTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLDKEQVLI
                     NAKTYKTQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKSDIEMGGTDQKFNLLMGRQLQRVYNIGKEQAVIM
                     MPLLEGLDGVNKMSKSLNNYIGVTEKANDMYAKILSISDELMFRYYELLSQKSLEEIA
                     QIKKDIEQGNLHPKKAKENLALEITERFHSKEEANNAKSEFDRIHSQNALPSDMAEFE
                     IQGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMYLEQGEYILQIGKR
                     KFAKLKVKE"
     gene            complement(12889..15084)
                     /locus_tag="RJ267_000075"
     CDS             complement(12889..15084)
                     /locus_tag="RJ267_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HDV7387972.1"
                     /translation="MKPIDEELLLEQLIDNVKNCKDLEAAKALLFEICGHDAILEKAV
                     DYCIFCHEGQFRKSGEPYAVHPILVATLVGFLSENKSNILAALLHDVIEDTNCTEEEL
                     REQFGSEVLKLVLGLTKIIEIREDNLISSKSKKSLTKSALTFRNMLLASIEDVGVLIV
                     KLCDRLHNMLTLDILREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNNQEMQLGLNEFISKIELLFLSNGFRQGSFEIQKRIKHSYSIYLKMQ
                     RKGIGIEEVLDLLGVRILVEKVSDCYLALGILHTHFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDAKSIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPRLDWLTDISMQSINN
                     LENAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRIKVPLLTELKNGDIVRVVTSNDKFYRCSWIDSVKTGKAKASIREFCKQKIR
                     EINLASSINMLSFIFGVDKNRIETWIEKENLVRRIRQVATDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFTLYCNHKIANVDFDFCCHPKRGDAVLAFVKGGNAIVHHKLC
                     DRADKMIDNNQDMVFIKWDSNIPKSYKLIFSLENKKGVLAEFLAFLAKMQINLLTINL
                     SSDLNSAVDYFEITMEIPDNINPDSVKDRLKSRCKILDFTSLNDAYKES"
     gene            complement(15068..15292)
                     /locus_tag="RJ267_000076"
     CDS             complement(15068..15292)
                     /locus_tag="RJ267_000076"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HDV7387973.1"
                     /translation="MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDF
                     DKNKNKLADIALYEIAENKITLEGLVETNR"
     gene            complement(15303..16022)
                     /locus_tag="RJ267_000077"
     CDS             complement(15303..16022)
                     /locus_tag="RJ267_000077"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HDV7387974.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIASEIKELIKNQI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKA
                     TKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFE
                     EGNLLKIIQGDTSLCSTVKNN"
     gene            complement(16074..17267)
                     /locus_tag="RJ267_000078"
     CDS             complement(16074..17267)
                     /locus_tag="RJ267_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDV7387975.1"
                     /translation="MRKNILIFFCFFLFVDISLANAINEKTKSLEENKRIQEQLNKKL
                     EDLASDILNGEKSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLTSQNEDLLKSKSN
                     MEGKLISLMAKDFAYDLPIPQGYIESEESFMAFEILGSLNKVLNEEIFKISKDYEGVS
                     RLIDDKQAQIKKINESLKDYNAQLAKLQSLKQKQISEINKQKTDRAIYAKKLDDLQAQ
                     QEELRKTLNQLKIINDKEDANSNKNDTKIVKNNQKIRQLGSSYQGSSVKRYTGKKTIA
                     PLDSFTVKQKFGNYVDPVYNLKIFNENVVLRSNKSDAVVKNVLDGKIVFAKDTSMLAR
                     VVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAVVGRIKNDLTFEVTQKNFHINPLE
                     LISLN"
     gene            complement(17264..18070)
                     /locus_tag="RJ267_000079"
     CDS             complement(17264..18070)
                     /locus_tag="RJ267_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDV7387976.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILITNATLKHYEELVNKDYNI
                     IVVSKTELDQNVVKTKVPFFAGLESLDPKDLIDRLKNDVSEKNLKVLKDSLPKFYTLK
                     LNSLPDQNELNSIKNQLLNIVGVSKVETFSKTHDKIYSLLILMKFVFWLFLFIIILLA
                     FVLFLKQMRIWLYEHTDRIEIMCLFGAPFWFRSFMLYKVVVVDCFIAFVILLAFFTQI
                     FDLSIIQESLKAVDIIFPPINFILHLTLIFLATLFICLLCVNTVMFKVKR"
     gene            complement(18057..18722)
                     /locus_tag="RJ267_000080"
     CDS             complement(18057..18722)
                     /locus_tag="RJ267_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7387977.1"
                     /translation="MPNLIQANKLTLGYDELVIKEASFAFKDDDFVFITGKSGSGKST
                     LLKSFYGDLEPISGKLEVCGSLMNKIGNLELLKLRQRIGIIFQDYKLVQEYSVEKNVM
                     LPLMIKGYSKKVCHDQATKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVIVVTHRIPSNLRVDYRRFNIENGKMN
                     EIF"
     gene            complement(18792..19970)
                     /gene="trmB"
                     /locus_tag="RJ267_000081"
     CDS             complement(18792..19970)
                     /gene="trmB"
                     /locus_tag="RJ267_000081"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HDV7387978.1"
                     /translation="MPNFKSKKIKEINLPYSKDDVEFLWLAKNDNVSLIYTKVQEESF
                     FLQIKKAQNGFVIKGDKHTKPSKIGYLQKALKIFKEGFCEDIINEAFGLKNNALIEKT
                     PFIVDNFDELLSRLQGKIYIEIGFGSGRHLLYQAKENPNVLILGVEIYNPALTQVAKL
                     AKAQNVNNILLIQSDARLLLSVLKSKSVEKIFLHFPVPWDKKPHRRVIGKDFCKECAR
                     VLVQNGRFELRTDSFEYFNFTLEQFLTFPAPKFSLRKNENLEISSKYEDRWKKQEKNI
                     YDLWVWNFNQECKNYELNEFNLSSVEFSKEDLKKIEQNFKNITIKKDDFFLHFESIYK
                     QDENLLLKVAFGAFNKPEHCYLHLDKTIDFAFKEPFKIQENIKAINELKEILKVQFKI
                     "
     gene            complement(19970..21205)
                     /locus_tag="RJ267_000082"
     CDS             complement(19970..21205)
                     /locus_tag="RJ267_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HDV7387979.1"
                     /translation="MMKRFRLSFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKV
                     ESLKSLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKL
                     EPGTKYRYMMKSFNEQGQISEDGKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHP
                     DFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKS
                     GSSQVVSSTSKALPPQVEHLSASTDGSSKIILTWDAPTYEDFSYYKVYSTSSSFLPFS
                     VLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILA
                     QSTSEGINLEWSDNDTRAVEYEVRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVI
                     AIDSAELRSEPSSKVKAAQ"
     gene            complement(21150..22118)
                     /locus_tag="RJ267_000083"
     CDS             complement(21150..22118)
                     /locus_tag="RJ267_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDV7387980.1"
                     /translation="MQTFLVDENSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQD
                     KNSFKLKNGDIISIASLKLCNEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASS
                     VKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGAILIAKNNFTHQKLSEQLAD
                     KSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSKNAKSAFINVVK
                     TENLTLMAAKLFTGRTHQIRAHLASLNRYILGDSLYGYKGKYDCRIMLHAYFLYFIHP
                     KTKEQIFVKAPLMEDFKNIMFEQINLGENDEKISLEFLLEFFNSFA"
     gene            22196..23296
                     /locus_tag="RJ267_000084"
     CDS             22196..23296
                     /locus_tag="RJ267_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HDV7387981.1"
                     /translation="MFRLDRRILTHFDYMQPILFLPIILISFFLIFEANPFLAEKQFV
                     YACVGLFAFMVFFFFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQNPPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGS
                     AMVLLLVGFGVLFIMGVHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIF
                     YILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWTDIKAK"
     gene            23350..23426
                     /locus_tag="RJ267_000085"
     tRNA            23350..23426
                     /locus_tag="RJ267_000085"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:23384..23386,aa:Ile,seq:cat)
     gene            complement(23535..23610)
                     /locus_tag="RJ267_000086"
     tRNA            complement(23535..23610)
                     /locus_tag="RJ267_000086"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(23575..23577),aa:Phe,seq:gaa)
     gene            23750..25093
                     /locus_tag="RJ267_000087"
     CDS             23750..25093
                     /locus_tag="RJ267_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HDV7387982.1"
                     /translation="MKQFGLDRRTFKILLAGYIIIALFGALLLHSSWAHTTPIDFLDA
                     FFTSTSAVSMTGLVIKNTAVDFTLAGQIIILALVQIGGLGYMGIGLFVYILIRKKVGF
                     SARNLLKESLFYPSMDGLFKFFKKVLLFIFTIELIGAILLTMRFALEMNFKKALWFGI
                     FHSISAFNNSGFTIFEHGFIAYKHDIAINLIITSLIIIGGLGYFVLVELYFFQRKKLQ
                     NLSLHTKMVVVASIFLIFSSTLIIFAFEYSNPQTIGHFSFFDKILSSYFIAINYRTAG
                     FNTLDMGHLHDASLFFGSLFMVIGGAPGGTAGGMKVTTVMVLLLYAYWSIRDGRVRIF
                     GHEIPRETISKAFIIAVGSAVYIVIAVILLSLLESKFDFIALLFETSSAFATVGISVG
                     NGGTLSLCALFSDPSKVIIIIMMLSGRIGVFAFLLSVFKQDKAIHLKFPEGKVNL"
     gene            25104..25754
                     /locus_tag="RJ267_000088"
     CDS             25104..25754
                     /locus_tag="RJ267_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HDV7387983.1"
                     /translation="MKNLNYGIIGLGKFGSVVADELIAGGHTVIVADKDEEALKSIQN
                     PPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVKNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKRLVKEFLTKDADYEVFDLSANTIRAIKINIDEK
                     LAGNSLKHVAQNMKVISYKKLNSDWEILPDLETTTVYSGDVVILLGTVKELREFEH"
     gene            complement(25751..26422)
                     /locus_tag="RJ267_000089"
     CDS             complement(25751..26422)
                     /locus_tag="RJ267_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthetic enzyme MqnA/MqnD family
                     protein"
                     /protein_id="HDV7387984.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGYKASMEYKKGVPSKLNKD
                     LFYRRIDAAIISSIESARKKYKNLDLGICANKRVLSVLVEKNTSNAKDPSSATSNALA
                     KVLKQDGKVIIGDKALKLYLKDPSKYIDLCAKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPKTKIKIPYYILQNYAKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVKACK
                     ALNLA"
     gene            complement(26428..27054)
                     /gene="upp"
                     /locus_tag="RJ267_000090"
     CDS             complement(26428..27054)
                     /gene="upp"
                     /locus_tag="RJ267_000090"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HDV7387985.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEA
                     SKDFSLKEIEISTPIQKTTVKKLDEKIMICPILRAALGMLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRTAIVIDPMFATGGTAIDACNFLKSQGVKKIKFISIL
                     AAPQGLKKFSQMHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(27051..28286)
                     /locus_tag="RJ267_000091"
     CDS             complement(27051..28286)
                     /locus_tag="RJ267_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDV7387986.1"
                     /translation="MNLKEEALKYHLGGKIDIVPSKPMATSYDLSLAYSPGVAEPCLE
                     IAKDNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFANVNAY
                     DIEINVHSIEEIVNFCKALAPTVGGINLEDIAAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFKDIKVVVSGAGAAGIASAKMYRNLGVENIILVDSKGVIS
                     KDRNDLTPQKLEFAVDSKEKTLKEVLKGADVFLGLSAPKILDDEMVLSMAKDPVIFAL
                     ANPIPEVMPEDVARLRKDAIVGTGRSDYPNQINNVLGFPFIFRGALDVRASKITENMK
                     VAAAKALADLAKLPVSDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVK
                     DGVAKVKNFDEKAYFESLK"
     gene            complement(28288..29679)
                     /locus_tag="RJ267_000092"
     CDS             complement(28288..29679)
                     /locus_tag="RJ267_000092"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDV7387987.1"
                     /translation="MHEKLTTRFAPSPTGYLHIGGLRTALYNYLYARKNGGNFLLRIE
                     DTDLKRNSKEATKAIIEAFKWCGLEHDGEVTYQSERFDLYKEYVKKLLDEGKAYYCYM
                     SKEELEELRAKQEAAKERPRYDGRYREFTGTPPQGIEPVVRIKAPQSGEIVFEDGVKG
                     EVRFKAEDIMDDFIIARSDGTPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFKIPKFFHVAMIHGEDGKKLSKRHGATDVMEYKEMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKKLFDPYHINKSASCYNAKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYEKAGFLLDLLRERAKTLHDIINGAKSIVNAPQNYDENAVQKFVNKNNLELLQAFAN
                     TLKDQKTGKDFEDFTNDFLEKKEAKLKDLAQPIRIALTGSAVSPSIFEVLEFLGVDEC
                     KKRIDNFLKVRGK"
     gene            29744..30559
                     /gene="salC"
                     /locus_tag="RJ267_000093"
     CDS             29744..30559
                     /gene="salC"
                     /locus_tag="RJ267_000093"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SalC"
                     /protein_id="HDV7387988.1"
                     /translation="MKKILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKAL
                     KIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSK
                     NQSYEQFRTNFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANI
                     YLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGGFSPVLNGKNGY
                     ELYEVKSKDGTQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR"
     gene            complement(30597..31928)
                     /locus_tag="RJ267_000094"
     CDS             complement(30597..31928)
                     /locus_tag="RJ267_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HDV7387989.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDS
                     FGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHS
                     IECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPAYYDSMIGKLVVWA
                     EDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH"
     gene            complement(31930..32385)
                     /gene="accB"
                     /locus_tag="RJ267_000095"
     CDS             complement(31930..32385)
                     /gene="accB"
                     /locus_tag="RJ267_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HDV7387990.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     VCPPVPAPQPINVSVVNEAQPSQSVKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSTV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIAEILVADGQPVEFGMPLFAVEKL"
     gene            32533..33093
                     /locus_tag="RJ267_000096"
     CDS             32533..33093
                     /locus_tag="RJ267_000096"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HDV7387991.1"
                     /translation="MGLKADNWIRKMALEHKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDNVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            33143..34147
                     /gene="pseB"
                     /locus_tag="RJ267_000097"
     CDS             33143..34147
                     /gene="pseB"
                     /locus_tag="RJ267_000097"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HDV7387992.1"
                     /translation="MFNGKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNAPCMRYFIGDVRDKERLSAAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPINLYGATKLASDKLFVAANNIAGNKQTRF
                     GVTRYGNVVGSRGSVVPFFKKLISEGAKELPITDTRMTRFWISLEDGVKFVLSNFERM
                     HGGEIFIPKIPSMKITDLAHALAPNLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKFVDKDNDFSINALGEKGQKVKDGFSYSSDNNPLWASEKELLEIINHTEGF
                     "
     gene            34149..35279
                     /gene="pseC"
                     /locus_tag="RJ267_000098"
     CDS             34149..35279
                     /gene="pseC"
                     /locus_tag="RJ267_000098"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HDV7387993.1"
                     /translation="MLTYSHQNIDQSDIDALTKALKDEILTGGKKVDEFEEALCEYVG
                     VKHACVLNSATSALHLAYTALGVQEKIVLTTPLTFAATANAALIAGAKVEFIDIKNDG
                     NIDEKKLEARLLKDSKNIGAISVVDFGGNSVEIDEISSLAKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNEELIDKIKLLRSHGIVKKRLWDS
                     DMVELGYNYRLSDVACALGINQLKKLDHNLEKREEIASFYDKEFEKNPYFSTIKIKNY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGIGVQVHYKPTYEFSFYKKFLGEIRLQN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGYCG"
     gene            35272..36578
                     /locus_tag="RJ267_000099"
                     /pseudo
     CDS             35272..36578
                     /locus_tag="RJ267_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
     gene            36575..>36882
                     /locus_tag="RJ267_000100"
     CDS             36575..>36882
                     /locus_tag="RJ267_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038850140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAC(3) family N-acetyltransferase"
                     /protein_id="HDV7387994.1"
                     /translation="MKYFLEHNGKKYSDKDLIDAFYQLGIKRGDILCVHTELMKFGKA
                     LLTKNDFLKTLLECFFKVLGKEGTLLMPTFTYSFCKNETYDKVHSKSKVGVLNEFFRT
                     "
BASE COUNT        12266 a         6637 c         5057 g        12922 t
ORIGIN      
        1 aaaatcaata atttatcaaa ttttaaataa aattatgtaa agattttaaa gactacataa
       61 aaatttacaa ggacactaga atgattaatg tgttgatgat agaagatgat cctgactttg
      121 cacaattatt atctgaatat ttagcgcaat ttaatattaa aatcacaaat tttgaaaatc
      181 ctaaaagtgc tttaaatgtg ggtattcaag gctatgattg tctgatttta gatttaactt
      241 tacctggaat tgatggtctt gaagtttgta gagaaatccg acaaaaaagc aatattccta
      301 ttatcatctc atcggctaga ggtgacttaa gcgataaagt tgtggggctt caaatcggtg
      361 ctgatgatta tctaccaaag ccttacgatc caaaagaaat gtatgcaagg attatgagtc
      421 ttattcgtcg cacaaaaaga gttgaacaca ctaataatga aaatattaac tctgctttca
      481 aaattgatga aagaagacat gagatcacct atgaagataa ggttttaaca cttactcctg
      541 ctgaatttga aattttagaa taccttatcc aacaacacgg atatagtgtt tcaagagaac
      601 agcttgtaag tcgctgtaaa aatctaaaag ataaagattc taaaagcctt gatgttatca
      661 tcggtcgctt aagggtaaaa ataggagata gttcaaaatc tccaaaacat attttttctg
      721 ttagaggtat aggatataaa ctgataggat gacaaaaaat tattctattc ataccaaact
      781 gattatttta tttgttgtta cttttttctt ggtttgtgtg ctttttatcg ttcttttaaa
      841 aatagaaggg aatacctata atgaagaaga aagtttaaaa caagaaaatc ttataaaaaa
      901 tttactcatc tcctatgaaa acacttcagg tgttgaaata ggagcttatc ttggaaacag
      961 cggttttaac gctatacaaa atcccaatct tgtaaaagct ataagaaata atggacaatc
     1021 actttttaaa gcaggcggag agctttgtac tctttcttct ttaaaatatc atagcaatct
     1081 ttattttgat gttcaatgta aagattttga tggcttgtat gaagaaaata ctagtgatag
     1141 ggtttataat cttttattga taggattttt ctctttttct ttgttggttg tttttatgta
     1201 tttttctgta ttaaaatcct tagaaccttt aaaaaaatta agaagacaag ttgccgaagt
     1261 tgcaaatggg gaacaacctg attttctaga ctatcaagaa gatgaagtag gcaagatcgc
     1321 ctttgaattt caaaaagctt tcaagaaaaa ccaagaatta atccaatcaa gacaactttt
     1381 cctaagaaca atcatgcatg agttaaaaac ccctatagga aaagggagaa tcatttctga
     1441 aatgatcaaa gaagacagac aaaaagaaag acttatcgct atatttttac gcatggattc
     1501 tttgatcaat gaatttgcca aaatcgaaaa tttattttca aaaaactaca acttacactt
     1561 taaacctagt cgttttagcg ctatacttga agaagctaaa gaacacctta tgatagatga
     1621 ttttaataaa gttgtaaaag tcgatataag atatgacgct ttaatcaatg ttgatatgga
     1681 aattttctct gtaattttaa aaaatcttat cgataatgcc ttaaaatact caaacaatgg
     1741 cacttgtgag cttttttgtt gtaaagaatg ttttaccatt aaaaatccag gcaaaccttt
     1801 agcagaacct atagagcatt atcttgaagc ttttacaaga gaaaaacaca atcaagtcaa
     1861 aggtatggga ctaggacttt atatagtttc agaggtatgt aaactgcata attttgattt
     1921 gatttatttt tatgatgatg gaaagcattg ctttaaaatt ttctttggag ataaagaaaa
     1981 ataatggtaa aaggcctgga aaaattcaat gaacttgttg aaagttttgc aaatttacct
     2041 accataggaa aaaaaaccgc cataaggctt gcttatcacc tttgtataaa taatcaaatc
     2101 gatggtatga aactcgcaca caatatagaa aatgctatcc gctttataaa accttgtgag
     2161 caatgcggtg ctttaagcga aaatgagctt tgcgaaattt gtagcgatga agaaagaaat
     2221 aaaaacattt tatgtatagt tgaaagccca aaagatatac taacactcga agagagtcaa
     2281 agttacaatg ggctatattt tgttttagat gagttaaatg aagaaaaact tgaaaaacta
     2341 aagcaaatca tacttaagct aaatatctct gagctcattt ttgcattgac acatagcatt
     2401 aattctgatg caaccatctt ttttatagag gataaattta aaggcttaaa cctaactttt
     2461 agtaaaatcg ctcaaggaat tccaagtggt gtaaatttag aaaatgtgga tttaatctct
     2521 ttaaataaag ctatgaattt tagaacaaaa atttagtaat ttttataaga aatatcggct
     2581 aattcttgca aagaaaaatc cgcaatcttt tcataagcaa aaccttcctt gcttaaaaaa
     2641 tcaagtaaag ttttttccat gattttagct ccttgtataa gctcatctga aagcttaaaa
     2701 ctcatcgctt caatacgctt tggcacacaa gctaagatgt gtgttttagg caaatctcct
     2761 gcaagttcca tgtattgtaa ggtttgaagc atttctattt catgggcact tccactccag
     2821 ctaattttat taggcatagc atcataagga aagaaaaata catctcctat actcgcacct
     2881 tgcgcttcta tacagtctaa aacgataagt ctatcgtatc gagcgatgat atagctaagc
     2941 tgcaaagcca aagttccacc atcaacaaaa tctaaagtaa attcagaatg agtgaatttg
     3001 tagttttttt caagttgttt gcaaagatga acgcctaagc cttcatccgc aaacatgata
     3061 ttacctattc caaggactaa gaatttcaat gctgttcttc ttttacaaat ttatatccgc
     3121 taataatagc atccatagca ccatctttac cttttactgc gttaaaaatc gccatgtaaa
     3181 tatgtactgg cacaaaaatc ataattaccc acatcaaaat tctatgataa gttcttacat
     3241 cggccaaacc gcccattgca gcttcaagcg gtcttaaaat atgatataaa agcccaccta
     3301 agccctcatg gtaagtatga gtataaagaa taagccctgt aagaatgata cctaatatca
     3361 caagataaaa gaaaaaataa gttacaaatt gcaaaggatt ataaacccct tttaaatgcg
     3421 gatgttttcc taagaaaatg taaaatttta cttgttctat ccataatttg atattaaaaa
     3481 tatcccatac acttctgcgt tcttttgcgc ttaccttatc gcagaaaaac aaatatactt
     3541 taaaaataat acaagcgatt aaaacaaaac ccaccgcttg atgtactaag cggtattttg
     3601 cttgcataaa atttacgggt tcaccgttac taatagggct ttggaacaca taggaaagat
     3661 aataccctgt gccaataaga atcactatag caatagctct tacccagtgc gttaaacgca
     3721 aacctatgct aaattcatat tcagcttttc tttgcaattt ttcttctttg ttttgcatga
     3781 aagcctcctt ataaattgac attcacttta tattcactta gattattgcc cttagtatcc
     3841 attacatgca ccgcacaagc aatacaagga tcataagagt gaatttttct aatgatttca
     3901 agtggttgtt ttacatcagc gattttaagt cctatcaaac attgctcata acttccacct
     3961 acgccatttg cgtcttttgg acttgcattc caagtagaag gcaccacagc ttgccaattt
     4021 tcaataacac catttttaat tctacaccaa tggcttaatg ttccgcgtgg cacatgcccc
     4081 atatagcgtc ctttgtattc tttagaatta tcgatcacat aaggagcaca agtactctgg
     4141 tctactttta aattttcaac taaattatta aacgctttta aagcattatt tgcaacgatt
     4201 tttgcttcaa tacaacgagc agctgttctt ccaagtgtgc taaatacagc atttaaagga
     4261 agtcctgttt cttttaagaa ctcatctacc acaggaacaa cattttgatt acctttagca
     4321 taatttacaa cgacatttgc taaaggtcct acttgcatag gatttccttc atagcgtgga
     4381 gctttaatcc agctatattt acccttagta tcaaacactt tagaatggac attatttcca
     4441 tgatgatcta cgctttctcc atctacaagt cctgtataat ttggatttgt tttgccatca
     4501 taaggatgta aaggttcatt gtctgcatac caagaatgag ttgcctcttc agtaatctta
     4561 tcttcttcta cttcataaac cttgcttaaa tctccatttt tgataatacc actttcaaaa
     4621 agccattcat ctcttccgat ttggaattct ttaaaggtat aaagattatt tacccctata
     4681 tcatttaaaa cacttgcttc atgtgcataa gcttttcctg ccatcacaag atcaggataa
     4741 tacgcacgat taacaaagtc ttgcacttct tggaatttaa ccatatattc acccattctt
     4801 gcaggatcga gtaaatccat aacgcaagtt acaccaccaa cggttaagct ttgtggatgt
     4861 ggatttttag ctccaaaaat cgccatacat tgagcaatga ttctttgaat tcttaaacat
     4921 tctagatagt gagaaagaac gattaaattt tgctcaggac ttaaacgata agttggatga
     4981 ccataatacg cattagcaaa aggtcctaaa tttcctttat ctacaaaagt tttaagtctt
     5041 tgttgcactt caagaagttt atccgcacct gttgcataag gatttgaagt gtatttaaaa
     5101 gcttcatcgc ttgctttttt aacatcagca cttaaagcac ttaccacatc agcccaatca
     5161 agcccatgaa gttgataaaa atgcacaata tgatcgtgta aaaataaagc cgcattcatt
     5221 aaagttcttg ttaaaagcgc atttaaaggc ggagtaatac ctaaagcatt ttcaacagca
     5281 actatacctg ctttataatg tgaaaaagta caaactccgc aaattctttg cgtcataaaa
     5341 cccgcatctc ttggatcacg cccttttact atggtttcaa taccacgcca caaagtagag
     5401 cccgcataag cttcttttac cacattgtta tcatcaacaa caacttcaac tcttaaatgc
     5461 ccttcaattc ttgtaatagg atctacgatt attttttgac tcatttttat tccttatctt
     5521 tttgcatgga agatataact gcgtgtgctg ctatagcaac gcctgtgagt gtaagcacac
     5581 ctataccgat tttatctgaa acactatccg cacccaaacc aaaaacggta tcaaatttac
     5641 gactagccat aggctcttca aaaggtccca tagtatccca aaaattaggc tcagaacaac
     5701 ctatacaacc atgccctgct tgaataggcc aagaagtgtg ctggttaaat ctctctcttg
     5761 agcagttatt aaaagtataa ggtcctttac aacctacttt ataaagacaa aaaccttgtt
     5821 ttgctccttc atccccaaaa gcatgtacaa attcacccgc atcaaaatgt ccgcgtcttt
     5881 cacaaagatc atgaattctt aaaccataag cccattttgg tctattatac acatcaagtg
     5941 ctggtaactc accaaataat aaataatgaa gtacattacc cactatattt ttttcacttg
     6001 gaggacagcc tggaacattg atcacagttt tgcttgttac tttgcttaaa ggctgcgcgt
     6061 tgctaggatt tggtcttgca gcttgaattc ctccaaagct agaacaggtt cctatagcaa
     6121 aaatcgccaa agcattttca cttgccattt ttgaaagctc atagcctgtt tttccatgtg
     6181 cacctatggt taaaaaatgc tctgtatcac ccatagggat accaccttca accattaaaa
     6241 tgtatttatt tttatgcttt tgaatggcac tttctaaatt ttcttcagct tgccaacctg
     6301 ctgcagccat cactgtttcg tgatattcta aagaaatata atcaaaaatc aaactatcaa
     6361 tcgttggagt atcacttctt aacaaactct cgctacagcc tgtacactca gccatatgaa
     6421 gccacacaac aggaagccta tcagcaagct cagcagcttt tgccaccata ggagtaaaac
     6481 tcgctggcaa agccaaaaat gcagtcatag cacctgccca tttcataaaa tcccttctag
     6541 aaaaacctga cttttctaat gcttttgtaa tactatcatt gtctttcaaa gaaggaagct
     6601 tttcaagagc cgataaacgc gactctattt gatgataatc aatcattata tttcctttat
     6661 aacatgaaat ttattctcta taaataataa aataaagaaa gttaaaataa agttaaaaac
     6721 ttactctcat aagtaaatat tagcatcatt cttaattaaa gcttaatcat aagccttttt
     6781 taagtttgcg aatcaaaaat cttgcaggat gaatagcgtg gatgtatttt ttttctaaac
     6841 acaagggttc attatttatc aatgcacaca aataccttgc cgctaaaaca cttgtactaa
     6901 aaccccttga cccatgagca aaattaaaat acaaattaca agacatttta gctggttttt
     6961 gctccttatt ttttgtccat aataaagctt tatattcttc tttataaaac gcttcatcat
     7021 aagcatttcc aactatcata aagcgatcac tcgaataaga tctaaaacct actttagaac
     7081 ctatgatttc taattttgta tttttatcca taaaatcggc tatattttct atattttgtt
     7141 tatcatcttc ttcttttgat tctaaacttg cattaagcct atcataactt gcaccaatta
     7201 cttgcaaatc atcttttaca gggcaaatat aagccttaga agataaagga aatggggtat
     7261 ctaaaaaagg ttttagatgt gtaacttgac ctcttacttt gcttaatttc atctcatcat
     7321 aaaaaacaaa gtcttttgca tctgcaccca tagcataaat caaaaccgca taatcacttt
     7381 taacaacatc atttttaaat tttaaactaa aacacccatt ttcaaattta taagcttgaa
     7441 attcatgatt aaaatatata caagctttgc ttttttcaaa aagattttta accaattttt
     7501 ttggaaaaat cactccaccc tcttctaaaa aagcttgatt ttttgaaatt ttaaacaaaa
     7561 cattttctct ttgcgtgtca aatctttctt gcattaaatc attatgtgca aactccacca
     7621 cacccttaaa ttctaaatct aaaatttgtc tataaaaacg acttgcctct ataaaagaaa
     7681 gctctgaaaa ctcccctaaa tttaccttag gctttaagat taaagagctt aaaattccac
     7741 tttcatttcc acttgcaccc ttgcctaatt ctaaatgttt ttcaaaaata tctatttcaa
     7801 aacctcttaa actaagctca taagctaaaa cagcacttga tatacctgca ccaataatag
     7861 ctactttttt attttttaaa gatgaaaatg ttcttgaaaa atacgcttct ttgtctttaa
     7921 actcaagctc attttccaaa taagctttaa tcatttctct ttttctaaaa cctttggttt
     7981 tttctactct aaagccatat ttttttaaat ttttttgcaa aaaacttgcc gaagaaaagg
     8041 tgcaaatttg tgtatttttt ttagaaagcc ttgccacttc aaagattaaa ttttcatcaa
     8101 acatttgcga gtttttattt ggagaaaatc catctaaata ccaaacatca gctttaaaat
     8161 ccaattcttt taaaacagct atatcttcaa aaacaagatc taaaaaacaa tcttcaaaat
     8221 aaaaacgata aattccttct ttagccttag gataaaattt taaaaattgt tctaaaagct
     8281 ctttaaactc ttcataaaat tctagttttt gataaatttc tcttaattgt tctttttcga
     8341 tataaaaagc ttctacgcta atataaaaaa gttttttagg acgcttagaa ggggtagttt
     8401 ctaaaaagcg tttcaaagta agaaaaaaat ttaaacctat gccaaaacca ctctctgcga
     8461 taataaaatt ttcttgattt ttccattcaa aagaatgagt gtaaacaaat ttgctttcat
     8521 ttaagccatc tttgaaatta aaataaaaat catcaaaatc caaagaaaaa ggagtattat
     8581 ccttaaaaat tagcttagct tttttcatcg gttgttataa aaataactct caactccatc
     8641 agcaataccc ttaaccaata aatcttgaaa agctttattg gcgattcttt tgccttcatt
     8701 tggatgtgta atatagccaa tttcaatcaa aattgcaggc atttgcgcac ctactaaaac
     8761 ccaaaaaggt gcttctctta caccgccatc tacaatttta tactttttgc gtgtttgagt
     8821 gagtatattt ttttgtacat caatggctag tttatttgaa gcaacgattt tttcacgatt
     8881 taagaaattt aaaatacttt gttttgagaa ataattaatc tcttcaaaat ccccttgatt
     8941 ttctttttct gctgcctttt tacttctttc acttcttgca ggacttaaaa agaaagtttc
     9001 cacgccttcg ctacttttgg cttttgtggc atttggtgct gcgttagcat gtatagaaat
     9061 aaacaaatcc gctcttttat cattggcata tttggttcta tcacgaagat tgataaattt
     9121 atccgaactt ctagtataaa gcactttata accgcgtttt ttaagttcat ttccaagttt
     9181 taaagccgta cttaaaacta tatctttttc ttttaaactt ccttttttat cacttaaagc
     9241 accgctatct tttccaccat gccccgcatc gataaccaca agctttcctg atttgtaatt
     9301 tgtatttaaa gttttactag aactttgagt tgcttttttg tttgcatttt gatttgtagt
     9361 ttgtatataa aaacctaaag tgagattatt attatccaac tcctttaaaa gtttaaattc
     9421 tttaggagca ctcaaaacca cacgaacggt ttttggattg tattgagtaa ctgtaatcac
     9481 attttgtcca aaagtaaagc tttttctatt accttctaac acacccttaa aacttacaac
     9541 atatcggaat ttttgatctt tggtatcaaa tactgctatt tctttttcat ctaaatcatc
     9601 gcttaaattt aacaccacag cattagaaat tttatccaca tctaaaacat ataaaggttc
     9661 ttgattttct ttttcattat tggttttttt atcttgtttt tttgtttcta aaactttggt
     9721 tttaatttct gttttttgat cttgcttttt ctctgaaatt ttactaactt gctcagtctt
     9781 tttttggcta gtagtttctt ttgaaaaaat tattttttct tctttaaaag atatatcaat
     9841 aggaattttt tctttagcat aaaccactat gcgtatggtt ttgggattaa attgtgaaat
     9901 cactaaacga tagtcatcaa atttaaactc ttttttaccc ccttctaaaa ccccatcaaa
     9961 atcactaata aaacgatagt ttcctttttc gtctaaagca aaacttttta attgatcctt
    10021 atccaaatct gcatttagtt caaactctac accttggttt gttttacttg actttaaaac
    10081 ataaatttta tcatcgcttt ttgctttaga aacgatactg ctctttggtg cttgcgaagt
    10141 tttagaattt gttttttctg tattttttat ttgttcgtta gatgattttt tttcattttt
    10201 ttgaactgtt tttataggtt caaaagttga tttttcagtg tcttgagaaa tattttgaac
    10261 cttaatatct ttaataacag cctttcttaa agcattaata cttgtttcac ttataccact
    10321 ttcttttaac tcattagcat atgacttgtc atctaaattt aaagtatttg aactgataat
    10381 caatcttttt aaaatttcaa ttttagtttt ttcatcttca ttaataacac tttgtatata
    10441 aaggcttttg agctgatggt gaaattttac ttgcacttca cttttagaac cgataaaatt
    10501 tttatcaaaa tttgcaagtt cattttcata aactccaaaa agagttgtga aaacaaatac
    10561 taaaaataca aaaattttag ccattattca ccattaacca atttttccat aagttcttta
    10621 acactgataa gcttatctaa acgatatcca tttgcacctg taaagaaaag tcctgtttct
    10681 tttttgcctg accacgcatc aaaaagccta tctgctatac aataccctac tttagtcgcc
    10741 tcttttccac gtccacaagg cgctacacaa ttgcttatac aattaatctt tggacccatt
    10801 cttttatcta ccaaatttaa aagattggtt ctaactccac gagcaggata gcccacagga
    10861 gatttaataa gctctatatc ttcttcttta gaagctagca aaacgctttt aaactcttca
    10921 ctcgcatcac attcaaaagt tcctatgaaa cgcgttccca tttgaacacc actagcccct
    10981 aaagaaatag cattttctat atctttttta tcccaaattc cacctgcagc aatcacggga
    11041 aaagaccccc aatttttagc ctcttctacc acaggagcaa ttaatttttc tagctgataa
    11101 ttcggatcta agcactgctc ataagtaaaa ccttgatgac ctccactttt tggcccttct
    11161 aaaaccactg catcaggtaa gcgattgtaa cggctttgcc atcttttgca aataattttt
    11221 aaagcctttg cagatgaaat gataggcact aaagccacat caggaaaatc tgcagtaaat
    11281 tcaggtaaat ttgtaggaag tccagcgcct gaaacaatca cattaaaacc aacctcacaa
    11341 gcatcgcgtg ctattcttgc ataatcatta cttgcacata agatattaca ccccaaaggt
    11401 gcatcgccac aaacttttct tgcattatta atcaaagctt gcaaaccctt gcgtgagtaa
    11461 aaattttcac ttccataagg cttagcgttt aattctttac ttgcatactt tctttcttca
    11521 taatatcctg ttcccacaga agaaataatc ccaagtccac catttaaaga aactgcagaa
    11581 gctaatctat cccagcttat gcctagtccc attcctcctt gaaaaatggg atattttata
    11641 gtatgttttc ctatttgtaa gggttgtaaa ttcattcttt tacctttaat tttgcaaatt
    11701 ttcttttacc tatttgtaag atgtattctc cttgttctaa atacatttgc tcgtcgctaa
    11761 ctttttgaga atttacactt actgcattag cactgatgct tcttcttgcc gcagaagtag
    11821 aactttccaa accacattca accaaagcct tagcaagcca aatttttcct tgtatttcaa
    11881 actcagccat atcacttggc aaagcatttt gagaatgaat tctatcaaat tcagacttag
    11941 cattattagc ctcttctttg gagtgaaaac gctctgtaat ctctaaagct aaattttctt
    12001 tagctttttt aggatgtaaa ttgccttgtt ctatatcttt ttttatttgc gcaatttctt
    12061 ctagactttt ttgacttaaa agttcataat atctaaacat caattcatca ctaatactta
    12121 aaattttagc atacatatca ttagcttttt ctgtaacacc aatgtaatta tttaaactct
    12181 tactcatttt gtttacaccg tctaaacctt cgagtaaagg catcataatc acagcttgtt
    12241 cttttcctat gttataaact ctttgaagct gtcttcccat caaaagatta aatttttgat
    12301 ccgttccacc catttcaata tcgcttttta aagccacact atcatatcct tgaagtaaag
    12361 gatacaaaaa ctcgcaaatc gaaataggac tttgctcttt aaatctcttg gtaaaatcgt
    12421 cacgctcaag cattctagct acactaaaag ttgaagtaag ctctactata cccgcggctc
    12481 caagttcatt aagccaagta gaattaaact taatctgtgt tttttcttta tccaaaacct
    12541 taaaaacctg cgttttataa gttttagcat tgattaaaac ttgctcttta tccagctttt
    12601 tacgcgttgc actttttcca cttggatcgc caatttgtcc tgtaaaatct ccaatcaaaa
    12661 actgcacaat agctccatgt ttttgcaaaa aagccatttt tgttaaaacc acgctatggc
    12721 ctaaatgtaa atcaggcgct gtaggatcaa accctgcctt tataaagaaa ttttcaccct
    12781 tttcataata atttttaatt aaattttcta ttctttcttc atcaataagc tctgcacaac
    12841 cacgcttaac ttctgctaat atttttttta tatccataat aaaccttttt aactttcttt
    12901 ataagcatca tttaaagatg taaaatctaa aattttacaa cgagatttta acctatcctt
    12961 gacactatct ggattgatat tatcaggaat ttccattgta atctcaaaat aatctaccgc
    13021 cgaatttaaa tcacttgata aattaattgt taataaattt atctgcattt tagctaaaaa
    13081 tgccaaaaat tccgctaaaa cacctttttt attttccaaa gaaaaaatca atttataaga
    13141 tttagggatg ttagaatccc attttataaa taccatatct tgattattat ctatcatttt
    13201 atcagctcta tcgcaaagct tatgatggac aatagcgtta ccacctttaa caaaagctaa
    13261 aacagcatca cctctttttg gatggcagca aaaatcaaaa tccacattag cgattttatg
    13321 gttacaatat agagtaaaat ttcctatttt ttgctcttta atctcatatt tatcaaacca
    13381 atatgacttc ttggcgtatt ttttaagacc attaactata tctttcaaat aagcactatc
    13441 tgttgctact tgtctaatac gtctgactaa attttctttt tctatccaag tttcaattct
    13501 gtttttatca actccaaaaa taaaacttaa catattaata gaacttgcta gattaatctc
    13561 tctgattttt tgcttgcaaa attcccttat acttgctttt gcttttcctg ttttaacact
    13621 atctatccaa gaacagcgat aaaatttatc attgctagta accactcgca caatatcgcc
    13681 atttttaagc tcggttaaca aaggtacttt aatacgattt acataagcac tttttgcatg
    13741 aagccctact ttggtatgca cttcataagc aaaatcaaga accgttgcac cacgaggcaa
    13801 agtgaaaatt tctcccttag gagaataaac tgcgacatct tcaacataaa gactatcttt
    13861 agcatattca taaagctcaa tagcattata atcttctgca ttttcaagat tgtttatact
    13921 ttgcattgaa atatctgtaa gccaatcaag acgaggcgca accacgctgc catcttcttt
    13981 atatttccaa tgcgctgcta taccaaattc cgcaatttta tgcatatcaa aagttcgaat
    14041 ttgtgcctct ataatacttt tagcatcaaa aagtgtggta tgtatagttt gataaccatt
    14101 ttgtttaggc aaggctatat aatccttaaa acgcgaaacc aagggattaa aatgtgtatg
    14161 taaaattccc aaagctaagt aacaatcact tactttttca accaaaattc ttaccccaag
    14221 caaatcaaga acttcttcaa taccaatgcc ttttctttgc attttaagat aaatagaata
    14281 gctatgttta atgcgttttt gaatttcaaa actaccttgt ctaaagccat tactcaaaaa
    14341 taaaagttcg attttggaaa taaattcatt taaacctaat tgcatttctt gattattgga
    14401 attgatataa ttgtcaataa gcttatactc atctggcata agatatttaa aactaagatc
    14461 ttccaaataa ttttttatgc ttgaaatacc aagtctatgg gctattgggg catatacaac
    14521 taaagtttct tcgctgattc ttttttgctt atcttctctt agaatatcaa gagtaagcat
    14581 attatgcagc ctatcgcata acttcacaat caaaacccca acatcttcaa tacttgctaa
    14641 aagcatattt ctgaaagtca aggctgattt agttaaactt tttttagatt ttgatgaaat
    14701 gagattatct tctctaattt ctataatttt agtaagtcct aaaacaagtt ttaaaacctc
    14761 agaaccaaac tgctctctaa gttcttcttc agtgcagttt gtatcttcaa tcacatcatg
    14821 caataaagca gctaaaatat tgcttttatt ttcacttaaa aatccaacca gtgttgctac
    14881 taaaatagga tgtaccgcat aaggctctcc actttttcta aactgccctt catggcaaaa
    14941 tatacagtaa tctaccgctt tttcaagaat ggcatcatgg ccacaaattt cgaaaagcaa
    15001 agccttagca gcttctaaat ctttacaatt ttttacatta tcgattaatt gttcaagcaa
    15061 taattcttca tcgattggtt tcaactaaac cctctaaagt gattttattt tctgcaattt
    15121 catataaagc tatatctgca agtttatttt tatttttatc aaagtctacc aaaggggttg
    15181 ctccatttgc caattgttcc gctctttttg ctaccactaa agaaaggcga tatctatcat
    15241 tacccatttt ttccaaagct tttgccgcta cttcttctat tcttttatcc ataattttct
    15301 ccttaattat ttttaacggt tgaacaaagg ctagtatcac cttgtatgat tttaagtaaa
    15361 ttaccctctt caaacatatt acaaaccaca ataggaagtt tgttatcttt agctaaagct
    15421 atagctgtat catccatcac tttaatatta tcttgcatag cctcatcata actcaaagta
    15481 tttaaaaata ctgcatcatc aaattgtttt ggatctttat cataaactcc attaactttt
    15541 gtagctttta ttaccatatc tgcatcaatt tccacagctc ttaaaatagc tgttgtatcc
    15601 gtagtaaaat aagggtttcc agtacctgca gcaaaaacca caacacgacc cttttctaag
    15661 tgtctttgcg ctcttctcat aatataagtt tcacaaaatg cttccatctg aatggcgctt
    15721 tgaaccctaa cttcaagtcc agagctttcc aaagcttctt gtatagcaat agcattgata
    15781 accgtagcaa gcatccccat atgatctcca cttgtccttt taatcaatcc gcccttagca
    15841 gcacttactc cgcgaataat attaccaccg cctataacta tgcctacttc tatttgattt
    15901 tttataagtt ctttaatctc tgaagctatg aattttaaaa tagaattttc tataccaaag
    15961 ccattttcac ctgctaaagc ctctcctgaa aattttacta aaactctttt tctctcttgc
    16021 attatttctc cttatttaac ttgaaattat attttaaatt ccattaaatt tagctaattt
    16081 aagctaatga gttccaaagg attgatatga aaattttttt gagttacttc aaaagtaaga
    16141 tcatttttta ttctacccac tacggcacct tttttaatat tcttaccaac tttaatatta
    16201 ggagcaatct tatctaaatg tgcgtatatt gtatgtatgc cattatcatg ttcaacaata
    16261 acaactcgag ctagcatact agtatcttta gcaaaaacta tttttccatc tagcacattt
    16321 ttaacaactg catcgctttt attgcttctt aaaactacat tctcgttaaa aattttaaga
    16381 ttgtaaacag gatcaacata atttccaaat ttttgcttca cagtaaaaga atccaatgga
    16441 gctatggttt tttttcctgt gtaacgcttg actgaacttc cttgatagct tgaacctaat
    16501 tgtcttattt tttgattatt ttttactatt ttagtatcat ttttgtttga atttgcatct
    16561 tctttatcat taataatttt taattgattt aatgtttttc taagctcttc ttgctgagct
    16621 tgtaaatcat cgagtttttt tgcatatata gctcgatctg ttttttgttt attaatttcg
    16681 ctaatttgtt tttgttttaa actttgaagc ttggctaatt gagcgttgta atccttaaga
    16741 ctttcattga ttttcttaat ctgagcttgt ttatcatcaa taagcctgct tactccctca
    16801 taatctttag aaattttaaa aatttcttca tttaaaactt tgtttaaact tcctaaaatt
    16861 tcaaaagcca taaaactttc ttcactttca atatagcctt gagggatagg taaatcataa
    16921 gcaaaatctt tagccattaa agatataagc ttaccttcca tatttgattt acttttaagc
    16981 aaatcttcat tttggcttgt aagggtgttt aactcttgat tttgagcctt agcacttgct
    17041 tcaagcttag aagtttgtga atttaagctt tcaatttgca aacttagatc tttcaaactt
    17101 ttttcaccat ttaaaatatc gctagccaaa tcttcaagtt ttttatttaa ctgttcttgt
    17161 atgcgtttat tttcttctaa actttttgtt ttttcattta tagcgtttgc taaacttata
    17221 tcaacaaaca aaaaaaaaca aaaaaagata agaatatttt ttctcatctt ttaaccttaa
    17281 acataaccgt atttacacac aacaagcaaa taaacaaagt agctaaaaaa attaaagtca
    17341 aatgtaaaat aaaattaata ggtggaaaaa taatatctac agcctttaaa ctttcttgga
    17401 taatagaaag atcaaaaatt tgggtaaaaa aggcaagtaa aataacaaaa gcaataaaac
    17461 aatcaaccac aaccacctta taaagcataa aagatctaaa ccaaaacgga gctccaaata
    17521 aacacataat ttcaatacga tcggtatgtt cataaagcca aattctcatc tgttttaaaa
    17581 acaaaacaaa ggcaagtaaa ataatgataa acaaaaataa ccaaaaaaca aatttcatca
    17641 aaataagcaa agagtatatc ttatcatggg ttttggaaaa agtttcaacc ttactaacac
    17701 ctacaatatt taaaagttga tttttaatcg aatttagttc attttgatcg ggtaaagaat
    17761 ttaattttaa agtataaaat tttggcagag aatcttttaa aactttcaaa ttcttttcag
    17821 aaacatcatt tttcaaacga tcaattaaat ccttaggatc taaagattca agtccagcaa
    17881 aaaatggtac ttttgttttt actacattct gatcaagttc agttttgctg acaactataa
    17941 tattataatc tttattaaca agttcttcat aatgcttcaa agttgcattt gtaatcaaaa
    18001 taaattcaaa agcaaacatc ataaaaagta aaggtaaaat taaagataaa tgtgttttaa
    18061 aaaatttcat tcatttttcc attttctata ttaaaacgac gataatccac tcttaaatta
    18121 ctaggaattc tatgtgttac cactataaca caagttccta aaagctctct agcagacttt
    18181 aaaagagtcc atataatatc agaagaatac tcgtccaaat ttcccgttgg ctcatcgcaa
    18241 agcaaaagct ttggattatg agctaaagcc ctagccatag cgacgcgttg ttgctcacca
    18301 ccgctaagtt gattaggcaa tttatctgct ttaaaagtta aatttacatg ctttaaaagc
    18361 ttagtagctt gatcatggca tacttttttg ctataacctt taatcattaa aggcaacata
    18421 acattttttt caacactata ttcttgtaca agtttataat cttgaaaaat aatccctatt
    18481 ctttgacgta attttaaaag ttctaaattt ccaattttat tcatcaaaga tccacatact
    18541 tcaagtttac cagaaatagg ttctaaatct ccataaaaag actttaaaag cgtactctta
    18601 ccactcccac ttttacccgt aataaaaaca aaatcatcat ccttaaaagc aaaactcgct
    18661 tctttaataa ctagttcatc ataacctaaa gtaagtttat ttgcttggat taaattaggc
    18721 atcctttttc cttaatttcc ctttttaaat ttttaaatta tgctttattt ttgcttaatt
    18781 ttcaagaaaa attatatttt aaactgaact tttaaaattt cttttaattc atttatcgct
    18841 ttaatatttt cttgaatttt aaatggctct ttaaaagcaa aatcaatcgt tttatcaaga
    18901 tgcaaataac aatgttcagg cttattaaaa gctccaaaag caacctttaa aagcaaattc
    18961 tcatcttgtt tatagatgct ttcaaaatgc aagaaaaaat catctttttt tatagtaata
    19021 tttttaaagt tctgctctat ttttttcaaa tcctctttag aaaattcaac cgatgagaga
    19081 ttaaattcat ttaactcata gtttttacac tcttggttaa aattccacac ccaaagatca
    19141 tatatatttt tttcttgctt tttccatcta tcttcatatt tgcttgaaat ttctaaattt
    19201 tcattttttc taaggctaaa ttttggagca ggaaaagtca aaaattgctc taaagtaaaa
    19261 ttaaaatact caaaactatc tgttctaagc tcaaaacgac cattttgaac taaaacccta
    19321 gcacattctt tgcaaaaatc tttcccaata actcgcctat gaggcttttt gtcccaagga
    19381 acagggaaat gtaaaaaaat cttttcaact gattttgatt ttaatacact caataacaat
    19441 ctcgcatcac tttggattag caaaatatta tttacatttt gtgctttagc aagtttagcc
    19501 acttgagtta aagctgggtt gtaaatttcc acccctaaaa ttaaaacatt tggattttct
    19561 tttgcttgat aaagcaaatg tcttcctgat ccaaagccta tttctatata aattttacct
    19621 tgaagtctag ataaaagctc atcaaaatta tcaacgataa atggtgtttt ttcaattaaa
    19681 gcattatttt taagtccaaa agcttcattg ataatatcct cacaaaaacc ttctttaaag
    19741 atttttaaag ccttttgcaa ataacctatt ttagaaggtt ttgtatgttt atcgccttta
    19801 atcacaaaac cattttgtgc ttttttaatc tgcagaaaaa aactctcttc ttgaaccttt
    19861 gtataaataa gactaacatt atcattctta gcaagccaaa gaaattcaac atcatcctta
    19921 ctataaggca gatttatttc tttgatcttt ttacttttaa aatttggcac tactgagccg
    19981 ccttaacttt gcttgaaggt tctgaacgaa gctcggctga atcaatagca ataacttcat
    20041 aactatattc cacccctggc aaagctttta catcttttaa tcgcttttct ttaatgcctt
    20101 taaaaactgc attttgctcc ccgccatagc gtcttacttc atactcaaca gctctagtat
    20161 cattatcact ccattctaaa tttatccctt cgcttgtact ttgagccaaa ataatactag
    20221 gagccaaagg gttgcctaaa gttttacctt ctacaccatc ttttggcata ggactttcaa
    20281 gaccatcttt atccaccatt gttactttat aatacttgct tttacctgct ccttctacta
    20341 tatcctcata agaattttta tcagtctttg ccaaaacact aaaaggaagg aagcttgagc
    20401 tcgtagaata aactttataa taagaaaaat cttcatacgt aggagcatcc caagttaaaa
    20461 tgattttact agaaccatct gtgctagcac ttaaatgctc aacttgagga ggtaaagcct
    20521 tgcttgtaga acttacaact tgacttgacc cactctttat cccattaaaa ctcacagcaa
    20581 taattctata acttgaattt tcattaggct ttaaatcact atcgatgtat tcagcgttta
    20641 aacgattttt tacttctgca atttttttaa attctttatc atcacctttg gttctttcaa
    20701 taatataaga atcaacccta aaatcaggat gcggacgcca aataagttta atacgattag
    20761 gcaaattagt cacagcttga acaaaaggaa cagcttcaag tcttggagct gtgctcactt
    20821 ctataacctt gccatcttct gaaatttgtc cttgctcatt aaagcttttc atcatataac
    20881 gatacttagt accaggctct aatttagtat ctacataatg agtttgaaac ttatctttaa
    20941 tagtgcctac aagtttaaaa tcaggatttt catcactaga acgatacaaa taaaatcctt
    21001 taatattttc attatataaa ggctcccatt caaaagcaat attactcata tcactaagac
    21061 tttttaaact ttcaaccttt ggcaagcttt catttacagc aggctcttta cttgaagcta
    21121 gcgaattcat ttgcgaaaca ctacaagcgc taagcaaaag agttaaaaaa ctcaagtaaa
    21181 aactcaagcg aaatcttttc atcattctct cctaaattaa tttgttcaaa cataatattt
    21241 ttaaaatctt ccatcaaagg tgctttaaca aaaatttgtt ctttggtttt tggatggata
    21301 aaatacaaaa aataagcatg taacattatc ctacaatcat acttaccctt ataaccatac
    21361 aaactatcac ctaaaatata gcgatttaaa ctagccaaat gcgctctaat ttgatgagtt
    21421 cttcctgtaa aaagcttagc agccatcaaa gttaaatttt cagtttttac tacatttata
    21481 aaagctgatt ttgcgttttt actgaattta ttttccttat ctatggctat ttttttaata
    21541 gcattagaag gcgaacgcat taaaaatttt tctactataa ttttatcttc ttttagtggc
    21601 aaatcaatta acgcaaggta aattcttccc atgcttttat ctgcaagctg ttcacttaat
    21661 ttttgatggg tgaaattatt tttcgctatt agtatagctc cgcttgtatc tttatctaat
    21721 ctatggacaa gaccagctct tatctctcct cctaaatttg ataaagtata ttttttttct
    21781 attaaccaat ccaccaaagt ggcattttta acgctacttg ctccatgaac gactaaattt
    21841 gaaggtttat ttaaaacaag caagtcttca tcttcgtata acacatcaat atcaaaatcc
    21901 acttcaaact gaggttttat ctcattgcaa agctttaaac ttgcaataga aataatatca
    21961 ccatttttaa gcttaaatga atttttatct tgaattttat cattaacctg tacacaatct
    22021 ttttctataa gtaaagcaac ttgattgcga ctttggttta attttttagc caaaaataca
    22081 tcaagccttg aattttcatc tactaaaaaa gtttgcattt tttccttaga ggttttgata
    22141 aatttaaaat tttagtttat aattatagct ttatattacc aactgaaggc aaattttgtt
    22201 tagattagat agaagaattt taactcattt tgactatatg caacccattt tatttttacc
    22261 cataattctt atttcatttt tcttaatctt tgaagctaat ccttttttag cagaaaaaca
    22321 gtttgtttat gcctgtgtgg gattgtttgc ttttatggtt tttttcttct ttcccataag
    22381 gaaatttatt tggattattc ctgttgctta ttggattaat atttttttat tgctaagcgt
    22441 agatattttt ggggttgaaa aattaggtgc taaaagatgg cttgaaattc cttttactca
    22501 ctttactata caaccttctg aaatttttaa acctagtttt attttaatgc ttgcctatct
    22561 tatttatcaa aatcctcctc caaaaaatgg atacaaactt aaacaattca tcaaacttag
    22621 cttttacatc atcttgcctt ttttgctaat tgcaaaagaa cctgatttag gaagtgctat
    22681 ggttttacta cttgttggtt ttggagtgct ttttatcatg ggagttcatt ataaaatttg
    22741 gttaagtatt gttatagcta taagtgttag ctctcctatt atttatacac atcttttaaa
    22801 accctaccaa aagcaaagaa ttcatgattt tatttcagaa aaaccaagtt atcaagtagc
    22861 ccaatcaatg atagctattg gaaatggtgg tttaaccgga aaatctcaag atgaagctac
    22921 gcaaactcat tttaaatttt tacctatttc aactagtgat tttattttcg cttacatgat
    22981 agaaagattt ggatttattg ggggattgac attaattata ttttatattt tacttatttt
    23041 tcatctactt agtttaaatt ataaacttaa agatgattat tttgctagag ttgctattaa
    23101 ttgtgttgca ttatttattt ttatttatgc ggcagtaaat atttcaatga ctataggttt
    23161 tgcaccagta gttgggatcc ctttgccttt ttttagttat ggtggaagtt cttttactat
    23221 ttttatgatt ttttttggaa ttttacagca tttaatcact tttagatatt tttggacgga
    23281 tataaaggct aaataaaata tttttaagca ttaataagat ataattttat cttttaattc
    23341 aacttaggcg gatttatagc tcagttggtt agagcaaccg gctcataacc ggttggtcgc
    23401 aggttcgagt cctgctaaat ccaccattct acatataagc tatagactct ttctttaaaa
    23461 aataactttt agttctttaa atatttcaat cttatataaa aaaagtatgt gatgtgattt
    23521 tttgaaagat aaagtggtgg ttagaggcag aatcgaactg ccgacacgca gattttcagt
    23581 ctgctgctct accgactgag ctatccaacc acaatgtttg ataaagtaaa aatgtaattg
    23641 tatctttttt tctttaattt aagtttaaat acaaaaataa aattttattt cccttaaagt
    23701 tttaataaga tagaataccc gctttagatc attatcaaat ggaaattttt tgaaacaatt
    23761 tggactagat agacgaactt ttaaaatttt actagctggt tatattatta ttgcattgtt
    23821 tggggcttta ttgctacatt caagctgggc acatacaact cctattgatt ttttagatgc
    23881 cttttttaca agcacatctg ctgttagtat gacaggatta gtaattaaga acactgcggt
    23941 tgattttacc ttagcaggac aaattattat cttagctttg gtgcaaattg gaggcttggg
    24001 atatatgggt ataggtttat ttgtttatat actcatacgc aaaaaagttg gttttagtgc
    24061 aagaaattta ctaaaagagt ctttatttta tccatcaatg gatggtttat ttaaattttt
    24121 taaaaaggtt ttgctgttca tttttactat agaattgata ggtgctatac ttctcaccat
    24181 gcgttttgcc cttgaaatga attttaagaa agctttatgg tttggaattt ttcattctat
    24241 tagcgctttt aataattctg gatttactat atttgaacat ggatttatag cttataaaca
    24301 tgatatagca attaatctta ttatcacttc tttgattatt attggagggc ttggatattt
    24361 tgttttggtt gaattatact tttttcaaag aaaaaaattg caaaatttaa gcctacatac
    24421 aaaaatggtt gttgttgcaa gtatttttct tattttctct tcaacgctta ttatttttgc
    24481 ttttgaatac tcaaatcctc aaactatagg acatttttca ttttttgata aaattttaag
    24541 ctcatatttt atcgctatta attaccgcac agcaggattt aataccttag atatgggaca
    24601 tttgcatgat gcaagcttat tttttggatc attgtttatg gttattggtg gtgcaccagg
    24661 tggaacagct gggggtatga aagtaacaac tgtaatggtt ttattgctct atgcttattg
    24721 gagtatccgc gatggaagag ttagaatttt tggacatgaa attccaagag aaactatatc
    24781 taaagctttt attatagctg taggttcagc tgtttatata gtaatagctg ttattttgct
    24841 ttccttgcta gagtcaaaat ttgattttat agccttgctt tttgaaactt cttcggcttt
    24901 tgcaaccgta ggaatttcag taggaaatgg tggaacttta tctttatgcg ctttgtttag
    24961 tgatcctagc aaggtgatta tcatcattat gatgctaagt ggtaggatag gtgtttttgc
    25021 ttttttactc tcggtattca aacaagacaa agctattcat ttaaaattcc ctgaaggaaa
    25081 ggttaattta taaaggtaaa atcgtgaaaa atcttaatta tggaatcata ggacttggaa
    25141 aatttggatc agttgtagca gatgaactca ttgctggagg tcatactgtt atcgttgcgg
    25201 ataaagatga ggaagcttta aaaagtatac aaaatcctcc aagctatgct tatattttag
    25261 attctacaaa tatttcagcc ctaaaagaag caggctttca tgatgttgaa gttgttattg
    25321 ttagcatagg agaaaatgtt gaaaaatcaa tccttactct tatggcgctt aaagatatag
    25381 gtgttaaaaa tatcattgct aaagcaacct ctaatatcca tggtcaaatt ctttctaagt
    25441 taggtgcaac aaaggttatt tatcctgaaa aagaaagtgc taaaagacta gtaaaagaat
    25501 ttttaactaa agatgctgat tatgaagttt ttgatctttc agcaaatact atacgagcta
    25561 ttaagatcaa tatagatgaa aaattagcag gaaattcttt aaaacatgta gcacaaaata
    25621 tgaaagtgat ttcttataaa aaattaaata gtgactggga aatactacct gatttagaaa
    25681 ccacgacagt ttatagtgga gatgttgtaa tactccttgg aacagttaaa gaacttagag
    25741 aatttgaaca ctaagcaaga tttaaagcct tacaagcctt tacaaaacgc tttaaggctg
    25801 ttttttcttt ggtagaaatt ttatgatata taacttcatc taaataatat ctaacatctt
    25861 ttatatctaa atcccttgtt ttggcataat tttgcagtat ataataagga attttaatct
    25921 ttgtttttgg aaattttttc aaaatttgtt tatataaagc ttttttttgc acacaagaaa
    25981 atctagcaaa aacaaaaggc aatcctgttt tttcgtgcca ttttgcacat aaatcgatat
    26041 atttagaagg atcttttaga taaagcttta aagccttatc acctataatt acttttccat
    26101 cttgttttaa tactttagcc agagcgtttg aagttgctga acttggatct ttggcatttg
    26161 atgtattttt ttctactaat acacttaaaa ctcttttatt ggcacaaata cccaaatcta
    26221 aatttttata tttttttcta gcactttcta tgcttgaaat gatagctgca tcaattcttc
    26281 tataaaataa atctttattt agcttacttg gaactccttt tttatactcc atacttgctt
    26341 tataaccatt aggtagggga tatttcttaa gatatatatg taaaggtaaa agattaatat
    26401 aatcaatttt tccaaaaatc atctctttta tagagtgtta aacactctat ctcctgcatc
    26461 tccaagccct gggataatat aacctttttc atttaaacct tcatcaatac aagccacaaa
    26521 aacttctaca tcatcatgca tttggctaaa ttttttcaaa ccttgtggag cagcaagtat
    26581 ggatataaat tttatttttt taactccttg gctttttaaa aaattacaag catctatagc
    26641 agtcccacct gtagcaaaca taggatctat aacaatagca gtgcgttttt ttgcatcttt
    26701 gggaagtttt tgaaaataaa aatccgcctt taaagtttct tcatttctca caaaccccaa
    26761 aaacccaaca cttgcatcag gaatcatctt aaaaacactt tcaagcattc ctaatgcagc
    26821 tcttaaaata ggacaaatca taattttttc atcaagtttt tttactgtag ttttttgtat
    26881 aggtgttgaa atttcaattt cttttaaaga aaaatcttta ctcgcttcaa aaagcaaaaa
    26941 agatgaaatt tcatcgatta acatacgaaa ttgaaagggc tttgtctctt tagcccttaa
    27001 aattcctaat ttatgttcga tcaatggatg attgatacaa tgaatatttt tcattttaag
    27061 ctttcaaaat aagctttctc atcaaaattt ttcaccttag ctacaccatc ttttaccgca
    27121 gctgctgcta cagctgtact tactgcagct tttactcttt catcaaaagg ttttggtata
    27181 acataatctc ttccaaattc taaagtgctt aaattataag cttttttaac cgcatcgctt
    27241 acaggaagtt ttgcaagatc tgctaatgct ttagcagccg ctactttcat attttcagtg
    27301 attttacttg cacgcacatc taaagcccca cggaaaataa aaggaaaacc taaaacatta
    27361 ttgatttgat ttggataatc acttcttcct gttcctacaa tcgcatcttt tctaagtcta
    27421 gccacatctt caggcatcac ttcagggata ggatttgcca aagcaaaaat cacaggatct
    27481 tttgccatgc ttaaaaccat ttcatcatca agaatttttg gtgcactaag tcctaggaaa
    27541 acatcagctc cttttaaaac ttcttttaaa gtcttttcct tagaatcaac agcaaattca
    27601 agtttttgag gagttaaatc atttctatct ttagaaatca ctcctttact atctactaaa
    27661 ataatatttt caacccctaa atttctatac atcttagcac ttgctatacc tgcggcacct
    27721 gcgccactta caaccacctt aatgtcttta aattttttac cacttatctc catagcattc
    27781 ataagccctg cagttgaaat aatagctgtt ccgtgctgat catcatgcat tacaggaatt
    27841 cctaaatctt gcaaagccgc ttcaatttca aaacattttg gagcagctat atcttctaaa
    27901 tttatcccgc ccacagtcgg agccaaagcc ttgcaaaaat ttacaatctc ttctatacta
    27961 tgaacattaa tttctatatc ataagcattt acatttgcaa attttttaaa caaacaagcc
    28021 ttaccttcca taacaggttt tgaagcctgt gctcctatgt ttccaagtcc taaaacagca
    28081 gaaccatcgc taactatagc taccaaatta gctttatttg tataagtata agcaagctca
    28141 ttatctttag cgatttcaag gcaaggttct gcaactcctg ggctatacgc caaagataga
    28201 tcataacttg tagccattgg cttacttggc acaatatcaa ttttcccacc taaatggtat
    28261 tttaaagctt cttcttttaa attcatttta ttttcctcta acttttaaaa aattgtctat
    28321 tcttttttta cactcatcaa cccctaaaaa ttctaatact tcaaaaatac taggacttac
    28381 cgcactccct gttaaagcta tgcgtatagg ctgagccaaa tcttttaact ttgcttcttt
    28441 tttttctaaa aaatcatttg taaaatcttc aaaatcttta cctgtttttt gatctttaag
    28501 tgtattggca aatgcttgga gcaattctaa attatttttg ttaacaaatt tttgcactgc
    28561 attttcatca taattttgcg gtgcattaac tatgcttttt gcaccattga taatatcatg
    28621 caaggttttt gcacgctctc ttaataaatc aagtaaaaat cctgcctttt cataaacaga
    28681 taaatcaaag ccaagatctt taagctgacg gttaatctct tcaaaaggca aagttttaat
    28741 ataatgagca ttcaaccatt caagcttttt agcattataa caagatgcgc ttttattgat
    28801 atgataagga tcaaaaagtt ttttcaaatc ttctagtgaa aaaacctcgt catcgccatg
    28861 actccaacct aaacgcacaa gaaaattaag caaagcttga ggtaaaattc ccatttcttt
    28921 gtattccata acatcagttg ccccatgtct ttttgaaagc tttttaccat cttctccatg
    28981 tatcatagcc acatgaaaaa atttaggaat tttaaaaccc aatgcttcat aaagcacaat
    29041 ttgtttagga gtatttgaaa gatgatcatc cccacgaatc acatcgctta cccccattaa
    29101 agcatcgtca ataacaacag taaaattata agttggggtt ccatcacttc ttgcaatgat
    29161 aaaatcatcc attatatctt ctgctttaaa tctcacctcg cctttaaccc catcttcaaa
    29221 aacaatctcg ccactttgag gcgctttaat acgcacaaca ggttctatac cctgaggtgg
    29281 cgtgcctgta aattctctat atcttccatc atatcttggg cgctctttgg cggcttcttg
    29341 cttggcacgc aattcttcta attcttcttt actcatataa caataatacg ctttaccttc
    29401 atctaaaagc tttttaacat attctttata aagatcaaaa cgctctgatt ggtaagttac
    29461 ttctccatca tgttctaaac cacaccattt aaaagcttcg ataattgctt tagtagcttc
    29521 tttggaattt ctttttaaat ccgtatcttc aatgcgaagt aaaaaatttc caccattttt
    29581 tctagcgtat aaataattat aaagagctgt tctaagtcca cctatgtgca aataccctgt
    29641 tgggcttgga gcaaaacgcg ttgtaagttt ttcgtgcatt ttttgccttt tcttaaattt
    29701 ttattgatat aatgcgatat ttatacttaa ataaaggttt gaaatgaaaa aaattttatt
    29761 aagttttgca ttttttgcaa gtttggctag tgcaaatacc attaatgcta tagctgtagt
    29821 tgtagacaaa gagcctatca caacttatga tatagatcaa actatgaaag cacttaaaat
    29881 tgatagaaat aaagctttag gcgtactcat caatgaaaaa atggaaattt cacaaatgaa
    29941 acaactgggt attgtagtca atgatctaga gcttgatgat gctataaata aaatgcttgc
    30001 tcaaaacaaa accactttaa atgctttcaa agcaaattta aaatccaaaa atcaaagcta
    30061 tgaacaattt cgtacaaatt ttaaaaaaga tttagaaaaa agaaagcttt atgaaaaaat
    30121 cgcaagtatg gcaaaaactg actttagtga tgatggagca aaaaaatttt tcgaacaaaa
    30181 taaagataaa ttcacttttt atacacaaat taatgcaaat atttatctat caaacaatcc
    30241 tcaaacttta gaaaatatca aaaatacaaa aaaaacaatc cttaaaccac aaaatgcatc
    30301 tttaaacaca agcaatgccg atccaagact tttaggactt ttatcgcaaa ttcctgttgg
    30361 aggcttttcc cctgttttaa atggaaaaaa tggctatgaa ctctatgaag ttaaaagcaa
    30421 agatgggaca caaactcctg aatacgaaca agttaaaaat gaagttttaa acgcttacgt
    30481 aagtgaacaa agacaaaatt tcatacagga ttattttgat aaactccgct ctaaaatcaa
    30541 tatagaatat ttaagataaa aattacaatt aaaatttccc ttataatagg gaaattttaa
    30601 tgtcttgcaa gataatttgt atcgtaatta ttattaataa aatcaggatt ttccatcatg
    30661 gaaagatgaa aatctttagt cgtttttatc ccacttataa gcaactcatc taaagctact
    30721 ttcatctttg caatagcttt attacgatct tctgcccaaa ctacaagttt gcctatcata
    30781 gaatcataat aagcaggcac gctatagtct tgataacaat gactttccat tcttacattg
    30841 cgtcctgcgg gtggaatgta tttagtaatc ttacctggac ttggcaagaa ggttttagaa
    30901 tcttcagctg tgattctaca ttctatagaa tgcccattaa gcttaatact ttcttgagat
    30961 ggtaaggcat aaccttctgc tactttaatc atttgttcta tgatatcaat cccacttacc
    31021 atttcactta cacagtgttc aacttgcaaa cgcgtattca tttctataaa ataaaagtct
    31081 aaatttttat ctactaaaaa ctcaaaagtt cccgcacctt catatcctat agctttagct
    31141 gccttaatag cagtttcatg aagcctagtg cgtgtttttt catcaagcaa aatcgcaggg
    31201 gattcttcta taagtttttg atggcgtctt tgcatagaac aatctctttc gcccacatga
    31261 atcacattgc caaaactatc tcctataacc tgcacttcta tatggcgtgg attttgtatg
    31321 tatttttcca tatacatagt tccatcgcca aatgctgtca tagcctcgct ttcagccgac
    31381 caatacgctt tttcaagatc tttttcattt tcaaccacac gcataccacg accaccacca
    31441 cctgcagctg cttttaaaat cacaggataa cctatttctt tggcaagttt tttagctgct
    31501 tcagctcctg ccaaagcccc atcgcttcct gggatcacag gtacgcctgc tctttgcatg
    31561 acttgttttg cttttgattt atcactcatt aaattcatag cttccacaga aggacctata
    31621 aatttgatgt tatgtttagc acaaatttca acaaaatttt gattttcact taaaaatccg
    31681 tatcctggaa aaatcgcatc agcttctgct atttcagccg ctgcgatgat agctgggata
    31741 tttaaataac tttcagaact tcttgcctta cctatacaaa tgcttgcatc agcgtatttt
    31801 aaatacaaag catctttatc tgcttcagaa tacacacaaa ttgctttttt acccatttct
    31861 ttaatcgttc ttaaagcacg cagtgctatt tctccacgat tagcaattaa tatgctttta
    31921 atttccattt tataatttct ccaccgcaaa taaaggcatt ccaaattcta caggctgacc
    31981 atcagcaact aaaatttcag cgatcctaca atcaaattcc gcttcaattt cattcatgat
    32041 tttcatcgct tcgataatag ctatagtatc gcctttttta accgtactac ctacttttac
    32101 aaaaggtgct gcacctggac ttggagcttg atagaaagtt cctaccatag ggctgtttat
    32161 acttggtttg tttgatttta cactttgact aggttgagct tcgtttacaa cgcttacatt
    32221 gataggttgt ggagctggaa ctggaggaca aacaggagct ggaacatcgc agcacatatc
    32281 tctttcaagt tctatttcaa aaccatcttg ttctttgatc ttaattttac taatatttgc
    32341 ttcagcaaaa aggttgacta actctttaat ttcttctttt gtcataaaat tctcctacaa
    32401 aatttaagaa cttaaccttg tattatataa aaaaacttga aatttaactt taaaaaagaa
    32461 aaaaatcata aaaaatatag attttttagg ttataatcct tacaaaaatt actaatatta
    32521 aaaaggttaa aaatgggctt aaaagcggat aattggataa gaaaaatggc attagaacac
    32581 aagatgatcg aaccattttg cgaagcaaat ataggaaaag gtgtggtaag ctatggactt
    32641 tcaagctatg gttatgatat acgtgtaggg cgtgagttta aaatttttac caatgttaat
    32701 tcaactgtag tggatccaaa aaatttcgta gaagaaaatg tagtagattt tgaaggcgat
    32761 gtatgtatag ttcctgcaaa ttcttttgcc ctagctagaa ctatagagta ttttaaaatg
    32821 cctgataatg tcttagctat ttgtcttggc aaaagcactt atgcaagatg tggcatcatc
    32881 gtcaatgtta ccccttttga accaggtttt gaaggacata tcactataga aatttcaaat
    32941 actacgcctt tacctgcaaa aatttatgcc aatgaaggta tagcgcaagt gttgtttttg
    33001 caaggcgatg aaaaatgtga caccacttat aaagataaaa aaggcaagta tcaagcccaa
    33061 actggcataa ccttgccaag aattttaaaa taggaacact tattgcttta attttaaaaa
    33121 aacttaagca aaggaaggca aaatgtttaa tggaaaaaat atcttaatca cgggcggaac
    33181 aggctcgttt ggaaaaactt atactaaggt tttgctagaa aactataaac ctaataagat
    33241 tatcatttat tctcgtgatg agctcaaaca atttgaaatg gcaagcgttt ttaatgctcc
    33301 ttgtatgcgt tatttcatag gagatgtaag agataaagag cgtttaagtg ctgctatgcg
    33361 tgatgtggat tttgttatac atgctgctgc aatgaagcat gtgcctattg ctgaatataa
    33421 ccctatggaa tgtataaaaa caaacataca cggtgcgcaa aatgtcatcg acgcttgttt
    33481 tgaaaatggg gttaaaaaat gtatcgctct tagtacggat aaggcttgca atcctataaa
    33541 tttatacggt gcaaccaaac ttgcaagcga taagcttttt gtcgctgcaa acaacatagc
    33601 aggtaacaag caaacacgct ttggtgttac aagatatggc aatgttgtag gttcaagagg
    33661 ttcagtggtg cctttcttta aaaaactcat cagcgaagga gctaaagaac ttcctatcac
    33721 cgatacgaga atgactcgtt tttggatcag ccttgaagat ggagtaaaat ttgtactgag
    33781 taattttgaa agaatgcatg gaggagaaat ctttatccct aaaattcctt cgatgaaaat
    33841 caccgatcta gcccatgctc tagctcctaa tttaagccat aaaatcatag gcataagagc
    33901 aggagaaaaa ctacatgaaa tcatgatttc aagcgatgat agccatttaa cctatgaatt
    33961 tgaaaactac tatgctataa gcccgagtat taaatttgta gataaagata atgactttag
    34021 tatcaatgcc ctaggcgaaa aagggcaaaa ggtaaaagat ggtttttctt atagttcgga
    34081 taataatcct ttatgggcaa gcgaaaaaga acttttagaa atcatcaatc acaccgaagg
    34141 tttttaaaat gcttacttat tctcatcaaa acatcgatca aagcgatata gatgcgctta
    34201 caaaagcttt aaaagatgaa attttaacag ggggtaaaaa ggtagatgaa tttgaagaag
    34261 ccctttgcga atatgtgggc gtaaaacacg cttgtgtatt aaactcagct acttcagctc
    34321 ttcatcttgc ctacacagca ctaggtgtcc aagaaaaaat cgttttaacc actcctttaa
    34381 ccttcgctgc tacggctaat gcagccttaa tagctggagc taaggtagag tttatcgaca
    34441 ttaaaaacga tggcaatatt gatgaaaaaa aactagaagc aagactttta aaagatagta
    34501 aaaatatagg agctattagc gtggtggatt ttgggggaaa tagcgttgaa atagatgaaa
    34561 tttcaagcct tgctaaaaaa tacaatatcc ctttaatcga tgatgcaagc catgctttag
    34621 gtgccttata taaaagtgaa aaagtaggaa aaaaagccga tctttctata ttttcttttc
    34681 accctgttaa gcccatcact acttttgaag gtggggctgt ggtgagtgat aatgaagagc
    34741 ttatcgataa aatcaagctt ttaagaagcc atggtattgt taaaaaaagg ctttgggata
    34801 gcgatatggt agaacttggc tataattacc gcttaagcga tgttgcttgt gctttaggga
    34861 taaaccagct taaaaaactc gatcacaatc ttgaaaaaag agaagaaatt gcaagttttt
    34921 acgataaaga atttgaaaaa aatccttatt tttccacgat aaaaatcaaa aattataaaa
    34981 aaagttcaag acatttatat cctatcttgc tttttcctga attttattgt caaaaagaag
    35041 aactttttga aagcttactt catgcaggaa ttggcgtaca ggtgcattac aaacctactt
    35101 atgagtttag tttttataaa aaattcttag gagaaatcag actccaaaat gcggataatt
    35161 tttacaaagc cgagcttagc ataccttgtc atcaagaaat gaatctaaaa gatgcaaaat
    35221 ttgtaaaaga tactttattt agcattcttg aaaaagttaa aaagggatat tgtggataag
    35281 ctagacttta gaagccaaga ttttagccaa actggaaagg ctatgtatga actagcttgt
    35341 gaactttttc ccatccctag aagtatcaca ggacaaggtt ttagagatag cttagaaatt
    35401 ttaaataaaa ctctgggggg gggatactca aatttcactc tataaaaagt ggcacaaagg
    35461 tttttgactg gatagttcct gatgaatgga atgttaaaga agcctatatc atcactccag
    35521 agggagaaaa aatttgtgat tttaaaaagc ataacttaca ccttctaaac tatagcgaag
    35581 ccatcgatca agaaatcgaa ctagaagaac ttcaagatca tctttactcc atagaagaaa
    35641 tgcccgatgc tattccttat gtaacgagtt attacaaaag gcgttgggga ttttgcctca
    35701 cgcataatga aagaaaaaaa cttaaaaaag gcaagtacaa agtctatatc aatgcgaaac
    35761 atgatgaaaa tggggttttg gattatgctg attttatcct acctagtacg caaaactcaa
    35821 aagatgaaat tttaatttca acctatcttt gtcatccttc catggcaaat aatgagctta
    35881 gtggtcctgt ggtggctatt ttcctagcaa aatggctttt gagtttaaaa gaaagaaagt
    35941 ataattaccg ctttgtcatc attcctgaaa ccataggctc tatagtctat cttagcaaac
    36001 atttagagca tttaaaaaaa catgttaaag caggctttgt gctttcttgc ttaggcgatg
    36061 atcatgctta ctcactcata cacacaccca aaaaaaacac tctaagtgat aaagttgcct
    36121 tgcatacgct taaaaataaa aaaaatttca aagcttttag ttttttagat cgtggaagcg
    36181 atgaaagaca atacaatgct ccgcttgtaa atcttggcat tgtaggagta tgtcgcacaa
    36241 gatacctaga atacgaacaa taccacacca gcaaagatga tctcaatttt atctctgaaa
    36301 aaggtttaat gggtggactt caaagcatac aagaaatgat tttaaatcta gaaatcaacg
    36361 ctgtatatga aaacaccata gtatgcgaac ccaatcttgg caaaagagga ctatatcata
    36421 cccttagcac tgccaatgac attcctttag cttgtaattt tctagcttac tgtgatggag
    36481 agaatgatat catcgatata gccaatatct taaatatgca agcttatgaa tttaaagaac
    36541 ttttgaaaaa aataaaattt tatggactag caaaatgaaa tattttttag aacacaatgg
    36601 caaaaaatac tccgataagg atttaataga tgctttttat caactaggta taaaaagggg
    36661 tgatatttta tgcgtacata cagaacttat gaaatttggc aaagctttgc ttactaaaaa
    36721 tgatttttta aaaaccttac ttgaatgctt ttttaaagtg ctaggcaagg aaggcactct
    36781 tctaatgcca acctttactt atagtttttg caaaaatgaa acttatgata aagtgcattc
    36841 taaaagcaaa gtgggagtgc tgaatgaatt ttttagaact ag
//
LOCUS       DAPIWQ010000003        28403 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.003, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000003 DAPIWQ010000000
VERSION     DAPIWQ010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 28403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28403
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.003"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..427
                     /locus_tag="RJ267_000101"
     CDS             <1..427
                     /locus_tag="RJ267_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HDV7387995.1"
                     /translation="SSLTNLNLIFMNFFELFDDKIYLRFEYDNIISDEQKLKLCELLN
                     SNLSGFNLKKIKKPIIKKDELKLDLNYSKMYAKLGLNTKDQQGLMAYLMNVFNELELV
                     LCAAKIQTIRQRTRNIFIFQKNEKLEHSEQKLVNLLISE"
     gene            432..2228
                     /gene="glmS"
                     /locus_tag="RJ267_000102"
     CDS             432..2228
                     /gene="glmS"
                     /locus_tag="RJ267_000102"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HDV7387996.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGELSF
                     FKAVGKLENLANKCTDFESQGYGFAIGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFEFYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDPNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDILKSLCFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGDEV
                     VFDELNNEDLSQVDEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDFIKTNEQDHYMCEFFEM
                     MVITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            2231..5356
                     /locus_tag="RJ267_000103"
     CDS             2231..5356
                     /locus_tag="RJ267_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDV7387997.1"
                     /translation="MKNFFCLTLVCKLFALSEFELHHIDKVHKLGYSGDTIIIGVADD
                     AFNQDHISLKDKILKSTYPTDTAGKQLIPDLKKSTHGSHVAGIAVGAKIGDSKPYGVA
                     YGAKFYGAGVFPNGSYTQIPDIYNFFKDVSIINNSWGINFYPYFNLKASNSGLVDCTQ
                     TNQGTSYNICNTPLEYVMKADKVANDMMRLSKDKGVLNVFAAGNEGILSPALHAILPS
                     YDESLRAWLAVGALDANEITLESDGTLIIKSQGLADFSNGFKGATNFSLVAAGVNINN
                     VDSSTNDKFTKKSGTSMAAPMVSGTAALVKQNFPFLDGKQIADILLSTANKNYKAPKF
                     TVKQVTDGTNQPKFLIVYISQDPPGIEDEIKRDLKQLYNGIQVQVNGQWIDYSDYIWD
                     NRDSAQSQKLNTSTISSINGVVRVEKEELFGQGILDAQKALKGLSILDANRLSDQDVL
                     KYEQEPNTAYYTINTAGYDAEFSNDISQRKWDESTHLSSAINKPTHLANLNIGLSKEG
                     EGILIISGQNTYEGATLIKQGELKLKGKVKNNAYVEQKAILSGNGIVGQNLNNKGIVR
                     PGNEDLNDLTVQGTYTQEGVDSKLQLDFGNYKNSKLIAKTYDIKSGNLEYIPLPKYYI
                     LNKPVKINLGDLEKSLSSFNHVLIQNTYALNFDFVLSDDLVSINKTLIKPNLKPNAYE
                     IPNTSLGNALRQLRSRADLSQTYQEFFASLDNGIDVKTKLNRIEGSGYLSTFSNHNQS
                     NLMQNNMLFTLHPLNINNFAQNNNILLASTYLPRIFSNEEYFWHLTPSYKYYKDKDFS
                     GQKTGANISLGENFSSGFLAYALSLSSAKFNFNNGSDLKSYNMDLLLNYNHDLDFIKI
                     LSGLGIGVGFNTLNRFVVEQPIEGKYKTLQTSAQLGVTKDIILGQDFIFNPLMYFTHS
                     FFYQEDFKENKSPFAKNYESLKHHSINANLGFNLAKNIEQDDYQASFSTFVIFEKRIY
                     GRTLENKASFVDFPIAFIQKYKLKDNILSQGFNSEFLYKNNVFWQFMLMNRFSHNAYE
                     LHLMSSVGKRF"
     gene            5412..6803
                     /gene="fumC"
                     /locus_tag="RJ267_000104"
     CDS             5412..6803
                     /gene="fumC"
                     /locus_tag="RJ267_000104"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HDV7387998.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDGIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFISSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDVAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRAKIDHNLHNSLMLVTALNPHIGYENAAKVAKNAHKKGISLKESTMELGLVSEEDFN
                     KFVDPTKMIGPKA"
     gene            complement(6833..7876)
                     /locus_tag="RJ267_000105"
     CDS             complement(6833..7876)
                     /locus_tag="RJ267_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDV7387999.1"
                     /translation="MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNIN
                     AKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKN
                     YQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVFYF
                     FANLYGTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITI
                     FYGYDGILMGVIFAVSSLIPAIGGALIYMPVSLYEFASNNLNSALVIFIYSVIVISFI
                     ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVST
                     LRMYVILKDKNLI"
     gene            complement(7880..8887)
                     /gene="ruvB"
                     /locus_tag="RJ267_000106"
     CDS             complement(7880..8887)
                     /gene="ruvB"
                     /locus_tag="RJ267_000106"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HDV7388000.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALKLNYEKTLFE
                     E"
     gene            8978..9388
                     /locus_tag="RJ267_000107"
     CDS             8978..9388
                     /locus_tag="RJ267_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HDV7388001.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            9389..9747
                     /gene="ssrA"
                     /locus_tag="RJ267_000108"
     tmRNA           9389..9747
                     /gene="ssrA"
                     /locus_tag="RJ267_000108"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(9832..11916)
                     /locus_tag="RJ267_000109"
     CDS             complement(9832..11916)
                     /locus_tag="RJ267_000109"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HDV7388002.1"
                     /translation="MQTSPDMFINRELSWLRFNSRVLDQCSKNLPLLEKLKFIAIYCT
                     NLDEFYMIRVAGLKQLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLERYFNEITS
                     ELEKENLFIKHYENLDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLNNLSFSLAV
                     KICDKSHPELVKFGMIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPGYKLLASAA
                     FRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVEFLNTHMKI
                     FHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFDAVEKEDIL
                     IIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASDGKQVTVMV
                     ELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLKFYMHLSTG
                     NYNASSAKIYTDVSYFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPNQIKEKVLE
                     MIRIETSKKNEGVIVAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCLKPDEEYSK
                     NIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIYDERSKAKL
                     AQFLRLQLSDNVLAYELKNNGEYEKIPSSEKIIDSQQTLEEYVSKIYKTLKKDTDQSR
                     ATHLASKLFKEN"
     gene            12105..12620
                     /gene="nrfH"
                     /locus_tag="RJ267_000110"
     CDS             12105..12620
                     /gene="nrfH"
                     /locus_tag="RJ267_000110"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HDV7388003.1"
                     /translation="MIILRRKILKKTSNLFTIFLVLLFVFFAVGFYTFYNAKGTSYLS
                     NASESCNNCHIMNEVYNEYMAGPHSQKVKGEPRATCVDCHLPHNFVAKWIAKAQSGLG
                     HAYAFTFKLDELPTNLSATEKSRKMVQENCIRCHADFAQTAINATTNPHADKSLNCAS
                     CHKDVGHKHGI"
     gene            12635..14467
                     /locus_tag="RJ267_000111"
     CDS             12635..14467
                     /locus_tag="RJ267_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HDV7388004.1"
                     /translation="MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
                     LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVSRGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIVDDSSKKWWNGTQKNYDEYEFWRDGNKVKEIETDGIVLTFPWSEWKKGQPFRI
                     EMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYV
                     REGAKKVTQHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQSDGKADAKKISEELKEVLELHRKAQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFEDIQKFNPGELYYKV
                     DVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK"
     gene            14603..15157
                     /locus_tag="RJ267_000112"
     CDS             14603..15157
                     /locus_tag="RJ267_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388005.1"
                     /translation="MINKNKLFRQVHIYLSLFFLPCALLFALTGIAYIFGINQDVGLK
                     VEQYQLSKVIESGKEREALIEYLKTNGLKVPSNTNIIKSKDKGITIGGTHYSANITQN
                     STNEYNITLKTRSLLGDMIMLHKDKGAWYFSVLSVGFGITLFMLYISGLMITLFANKK
                     DRSKQFAVLGVGVVVTLLLAYLSL"
     gene            15221..15310
                     /locus_tag="RJ267_000113"
     tRNA            15221..15310
                     /locus_tag="RJ267_000113"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:15255..15257,aa:Ser,seq:gct)
     gene            complement(15383..16402)
                     /gene="ceuB"
                     /locus_tag="RJ267_000114"
     CDS             complement(15383..16402)
                     /gene="ceuB"
                     /locus_tag="RJ267_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin ABC transporter substrate-binding
                     protein CeuB"
                     /protein_id="HDV7388006.1"
                     /translation="MYLFLKRRKYEKIFSFCIFCIFLSLILTACNSNSNENNASSTTK
                     TNTATVKVLPISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKV
                     VGVPAKNLPKYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAP
                     TLFVGLDNANFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALI
                     ILTNSNKISAFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVV
                     DRNVILGNKERAQGILDNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEI
                     KNAVK"
     gene            complement(16387..17142)
                     /locus_tag="RJ267_000115"
     CDS             complement(16387..17142)
                     /locus_tag="RJ267_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7388007.1"
                     /translation="MIKLKNITKFYDNKVIISDLSLDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPSSGEIYIDGMNLKNYKEQILAQKISILKQQNNINLRLKVEELVAFGRFP
                     HSQGRLNTNDKIKINEALEYMELSNLRNEFLDTLSGGQKQRAFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDEIIALKDGKLLKQG
                     SKDEIINQENLKQIYDMDIPVSQINGKKICIYF"
     gene            complement(17139..18077)
                     /locus_tag="RJ267_000116"
     CDS             complement(17139..18077)
                     /locus_tag="RJ267_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDV7388008.1"
                     /translation="MRKKMLILSFLTLNMIGIFIFVGLNGFDEYALKSRFLQIAAIII
                     VAICIAVSTVIFQTLCNNKILTPAIIGLDSLYMLLQSALIFSFGAANLSVYKNDINFL
                     ITLVCMVVFSLGLYKILFSSDRSIYLIMLLGLVFGTLFSTLSSFFEVLIDPDEFMVIQ
                     GRMFASFDNIAFDVLILAYIISFLSFIWIFRYMKFLDPLNLGKDLAINLGINYQKISK
                     QLMIIIAILTSISTALVGPITFLGLLVVNITYELFKTAKHSILLSACILISILALLGG
                     VFFVSRVFDYNATISVVINFLGGIYFIYLVLKGNKL"
     gene            complement(18070..19038)
                     /locus_tag="RJ267_000117"
     CDS             complement(18070..19038)
                     /locus_tag="RJ267_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7388009.1"
                     /translation="MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQL
                     EIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIF
                     FTGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
                     YALNYIQNIQGWLQGSMANVIQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNL
                     GISYNGILFLGLMIVSIITSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALC
                     GALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKVYA"
     gene            complement(19124..20113)
                     /locus_tag="RJ267_000118"
     CDS             complement(19124..20113)
                     /locus_tag="RJ267_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HDV7388010.1"
                     /translation="MRKIALFLSLCVFIWASDLQQALEYEKQGDYKKAMEIYKKLALK
                     NSSVLISQEQNNSSQATQMQNSITIKKEEKQDFSRLALANYLGENESFNPLGISSYKM
                     NYFLPFTYSFNSLGTNNNKSEAKFQLSVKKRLFENLLGLDEKYYIAYTQTSWWQIYEH
                     SSPFRETNYQPEFFIDLPLYLKDYEFFNNLRVGILHESNGKGDENLQSRSWNRIYVST
                     AILYNKFLFVPRLWYRIPENKKDDDNPAILHYMGNFDVNLAYLGDDYFINLMLRNNLK
                     FHNNKGAIQVDLGYDIFNNGIYWYLQYFNGYGESLIDYNKHLQRLSTGFLISY"
     gene            complement(20110..20685)
                     /locus_tag="RJ267_000119"
     CDS             complement(20110..20685)
                     /locus_tag="RJ267_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDV7388011.1"
                     /translation="MQLNELNCVILCGGKSSRMGQDKSKLILKNQNLTQFQVEKFSKI
                     FKNVYVSAKEDKFENHFSLIKDSLEFEVYSPMLALYSILSNFKNEFVFVLSVDSPKVG
                     ENELLKMLPFLEQNYKIIIAKTPLHKHPLCGFYHSSLAQTCKNFLEKNEQKIGLLFSE
                     IKTKFVEFEDEDAFLNLNFYEEYEKFKSELK"
     gene            20747..22054
                     /locus_tag="RJ267_000120"
     CDS             20747..22054
                     /locus_tag="RJ267_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HDV7388012.1"
                     /translation="MKYTELLQLQTFFSQFKKIDFIKRINDNILELSFDRERFIFDLT
                     RAMSAIYTAKFNAKNYNAPFDFMLKKYFSNAFIKEVKVLEGNRILCFSVKANKAYKSY
                     ESKIYFEFTGKNTNVILTDEKDLIIEALRHIDKSYRVVKPNVILEPLKPYKMDENFEE
                     IKDFADYFSRKFTSIYESKIKQIKNLKLAQVDKKIQNLQELFSSLDEENSLLLKALEY
                     RKRADVLFANLSVLKDYEREFKLDDFEGKELEFKLEFSPKRSANLYYKNAKKLEQKAK
                     NLNIQRQNLKEKLDFTLSLKELLLQAKSEIELEILLPKKNSKKNQDYKQEDLVANFYY
                     NEFKICVGKNEKGNEFLLKNAKKDDLWLHVRDIPSAHTLIVSNKQKISLDVIEFAARL
                     CVSFSKLKKGSYWVDYTLKNFVKVQQKAFVNYTNFKSINITKD"
     gene            22056..22394
                     /locus_tag="RJ267_000121"
     CDS             22056..22394
                     /locus_tag="RJ267_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388013.1"
                     /translation="MPVSPLGNINYINQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDDEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            22403..23128
                     /locus_tag="RJ267_000122"
     CDS             22403..23128
                     /locus_tag="RJ267_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HDV7388014.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILALLLVVGYLVYKKASLKPALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSPTSPNKTLEGVI
                     GGLICASVIGTILGIFVYSFWLSLLCSFFVAIFAVIGDLFESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIAAFVMVTFL"
     gene            23125..24195
                     /locus_tag="RJ267_000123"
     CDS             23125..24195
                     /locus_tag="RJ267_000123"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HDV7388015.1"
                     /translation="MILFGSTGSIGVNALKLAALKNIPISALACGDNIALLNEQIARF
                     KPKFVAIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGSFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     RYKIKDLNQVSVKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIE
                     PRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAVDFSKMPALKFHPI
                     STKKYPIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLGITKCIFKALDHFGV
                     PKISSIEEVFEYDFKTREYLRS"
     gene            24197..25591
                     /locus_tag="RJ267_000124"
     CDS             24197..25591
                     /locus_tag="RJ267_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deacylase"
                     /protein_id="HDV7388016.1"
                     /translation="MKFFLTILFFITSIFALELDFSVGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGNNGDLNRKFASISPKDPD
                     YKTVQRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTSEINASK
                     YPDLENIATQTVNSVNSSLADPKHAYHLKNTKTQELGDMEMLKALTYFVISNHKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFSRDFELTPQGVDKVINKELEVKLFDDR
                     ILLSLKNPRKLINYVPFPVNKELNYNTSNELTAIIAEGNSFYIQYGNRFQTRLYPEYL
                     EFSDAFNEVTFQVDGNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHSKDESGILV
                     HKKNMQTQYSLDMAGKIYRVEFYELRGANLQQLLEANTNSKLIKNAKNLDLNTLKMAR
                     SKDKFLGSILVEFE"
     gene            25588..26595
                     /gene="tsaD"
                     /locus_tag="RJ267_000125"
     CDS             25588..26595
                     /gene="tsaD"
                     /locus_tag="RJ267_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HDV7388017.1"
                     /translation="MKNLILAIESSCDDSSIAIIDKNTLECKFHKKISQELDHSIYGG
                     VVPELAARLHSEALPKILTQCKEHFKNLCAIAVTNEPGLSVSLLSGISMAKTLASALN
                     LPLIPINHLKGHIYSLFLEEKISLDRGILLVSGGHTMVLYLKDDANLELLASTNDDSF
                     GESFDKVAKMMNLGYPGGVIIENLAKNAKLKNISFNTPLKHSKELAFSFSGLKNAVRL
                     EILKHKNLSDDIKAEIAYAFENTACDHIMDKLEKIFNLYKFKNFGVVGGASANLNLRS
                     RLQNLCQKYNANLKLAPLKFCSDNALMIARAAVDAYEKKEFVSVEEDILSPKNKNFSR
                     I"
     gene            26596..27111
                     /locus_tag="RJ267_000126"
     CDS             26596..27111
                     /locus_tag="RJ267_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HDV7388018.1"
                     /translation="MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEISKSLNNL
                     KTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGNFNGTKEVNFRVGDDKECLKLVF
                     IDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
                     ASKTYLLIGEM"
     gene            27111..28353
                     /locus_tag="RJ267_000127"
                     /pseudo
     CDS             27111..28353
                     /locus_tag="RJ267_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344730.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
BASE COUNT         9986 a         3955 c         4876 g         9586 t
ORIGIN      
        1 aagttcttta acaaatttaa atcttatttt catgaatttt tttgaacttt ttgatgataa
       61 aatttattta agatttgaat atgataatat tatcagcgat gagcaaaaac taaaactttg
      121 cgagctttta aattcaaatc tttctggttt taatttgaaa aaaattaaaa agccaatcat
      181 taaaaaagat gagttaaaat tagacttaaa ttattctaaa atgtatgcca aattaggtct
      241 taatactaaa gatcagcagg gtttaatggc gtatttgatg aatgttttta atgaacttga
      301 acttgtttta tgtgcagcaa aaattcaaac cataagacaa aggacgcgta atatttttat
      361 ttttcaaaag aatgaaaaat tagaacatag cgagcaaaag ttagttaatt tattaataag
      421 tgagtaaaaa aatgtgtgga atcgtaggct atataggaaa taatgaaaaa aaacaaatta
      481 tactaaatgg acttaaagaa ttagaatatc gtggctatga tagtgcgggt atggcagtga
      541 tgcaagaagg agagcttagt ttttttaaag ctgtaggaaa acttgaaaat ttggcgaata
      601 aatgcacgga ttttgaaagt caaggttatg gttttgctat aggtcataca agatgggcaa
      661 ctcatggtaa gcctactgaa atcaacgcac atcctcattt aggacagtat tcttgtgtga
      721 ttcacaatgg tattatagaa aattataaag aaatcaaaga taaacttgaa aaagaaggcg
      781 tgagtttttt aagtcaaacc gatacagaag ttattgtcca gctttttgaa ttttatgcaa
      841 gaaatttggg agtttttgaa gcttggcaaa aaaccatcaa agaacttcgc ggtgcttttg
      901 ctactttgtt ggtaacaaaa aaagatccca atcatgtgta ttttgcaaaa aatgctgccc
      961 ctttgattat aggtaaaaat gcaaataaag aatggtattt ttcttcaggt gatgcgcctt
     1021 tgataggaag ttgtgatgag gtaatgtatc ttgaagattt aagcttggga tacgcgagta
     1081 aagatgagct tgtcgtttat gaaaatgata ttttaaaatc actttgtttt tctaagcttt
     1141 caggcgataa ggcttatgca aaaaaagacg gctttcgttt ttttatggaa aaagaaattt
     1201 atgaacaaag tcgcgtgatg agtgaagttt taatggggcg tattcaaggc gatgaagtcg
     1261 tttttgatga gctaaacaat gaagatttaa gtcaagtaga tgaaatcacg ctttgtgctt
     1321 gtggaacaag ctatcatgct gcaatggcaa gtgcttattt gtttgaaaga attgctaaag
     1381 ttaaagctaa agtagaaatt gcaagtgaat ttcgataccg tgaagcaatt ataaaaaaag
     1441 attctttatt tatcgttatt tctcaaagtg gagaaacagc agacacttta gaggctttaa
     1501 agattgcaaa agagcagggt gctaagactt ttgcaatttg caatgtggat aattctaata
     1561 tagtgcgttt agcacatcta agtcttttaa ctcgtgcggg catagaaaaa ggagttgctt
     1621 caactaaagc ttttgctact caggttttaa cactttggat gcttgctatt tttatggcac
     1681 aaaaaagaaa tttaaatgtt tctgctgaaa ttaaagcact tttgcatact ccaaattgcg
     1741 tgagtgtaaa acaggcttta catgaaaaaa ttcatcgttt atccaagcgt tatttagatg
     1801 gacatggctt tttctttata ggcagagatg tgttttatcc tttggcttta gaaggagctt
     1861 tgaaacttaa agaattatct tatcttcacg ctgagggtta tcctgcagga gagatgaaac
     1921 atggccctat tgctttggct gattctaagc tttatactat agctttaatg ccaaagcaca
     1981 tgctttatga aaaaacaaaa tcaaatgttg aagagcttat tgctagggat tctacagtgc
     2041 ttagcatttc acctttagaa tttgatttaa gtgatgattt tataaaaacc aatgagcaag
     2101 atcattatat gtgtgaattt tttgaaatga tggtcattac tcaacttttg gcgatggaaa
     2161 tttccataag acttggcaat gatgtggata tgccaagaaa tttggctaaa agcgtaacgg
     2221 tagaatagaa atgaaaaatt ttttttgttt aactttagtt tgtaaacttt ttgctttaag
     2281 cgaatttgaa cttcatcata ttgataaagt acataagcta gggtatagcg gagatactat
     2341 tataataggt gtagccgatg atgcttttaa tcaagatcat attagtttaa aggataagat
     2401 tttaaagtct acttatccta ctgatacagc tgggaaacag cttatacctg atttgaaaaa
     2461 atcaacacac ggaagtcatg tagcaggtat agctgttgga gcaaagatag gcgatagcaa
     2521 accttatgga gtggcttatg gggcaaaatt ttatggagct ggggtgtttc caaatggctc
     2581 ttacactcaa attcctgata tttataattt tttcaaagat gtgagtatta ttaataatag
     2641 ctggggtatt aatttttatc cttattttaa tcttaaggct tcaaattctg gattagtaga
     2701 ttgtactcaa actaatcaag ggacaagcta taatatctgt aatactcctt tggaatatgt
     2761 tatgaaagca gataaggttg ctaatgatat gatgaggctt agcaaggaca agggagtatt
     2821 aaatgtattt gctgctggta atgaaggaat tcttagccct gctttgcatg cgattttacc
     2881 aagttatgat gaatctttaa gagcttggtt ggctgttgga gctttggatg caaatgagat
     2941 tactttagaa tcagatggga ctttaataat taaaagtcaa ggtttggctg attttagtaa
     3001 tggttttaag ggagctacga atttttcttt agttgctgct ggagtaaata ttaataatgt
     3061 tgattcaagc actaatgata agtttacaaa aaaaagtgga acttctatgg cagcacctat
     3121 ggtaagtgga acagcggcac tggtcaagca aaatttcccc tttttggatg gtaagcaaat
     3181 tgctgatata ctattaagta cagcaaataa aaattataag gctccaaaat ttactgttaa
     3241 acaagtaacc gatggaacaa atcaacctaa atttcttatt gtgtatattt cgcaagatcc
     3301 acctgggata gaagatgaaa taaaacggga tttaaaacag ctttacaatg gaatacaagt
     3361 tcaagttaat ggacaatgga ttgattatag tgattatatt tgggataata gagatagtgc
     3421 gcagtcacaa aaacttaata cttccactat tagttctatt aatggagtag ttagagttga
     3481 gaaagaagaa ttatttggac aaggaatttt agatgcacaa aaggcgttaa aaggactgag
     3541 tattttagat gcaaacagac tcagtgatca ggatgtatta aaatatgagc aagaacctaa
     3601 tacagcttat tatactataa acactgcagg ttatgatgct gaattttcta atgatattag
     3661 tcaaagaaaa tgggatgaaa gtactcattt atcaagtgct attaataaac ctacacattt
     3721 agctaatctt aacatagggt tatctaaaga aggtgaaggt attttgatta tcagtggtca
     3781 aaatacttat gagggcgcaa ctttaatcaa acaaggagaa ttaaagctta aaggaaaagt
     3841 taaaaataat gcttatgtag aacaaaaagc aatattaagc ggtaatggta ttgtagggca
     3901 aaatttaaac aataaaggca tagttagacc tggaaatgaa gatttgaatg atttaaccgt
     3961 gcaaggaact tatactcaag aaggagttga ttctaaattg caacttgatt ttggtaatta
     4021 taaaaattct aaactgattg caaaaactta tgatattaag agcgggaatt tagaatatat
     4081 tcctttacct aaatactata tcttaaataa gccagtgaaa attaatttgg gagatttgga
     4141 aaaaagttta tcatctttta atcatgtttt gatacaaaat acctatgctt taaattttga
     4201 ttttgtttta agtgatgatt tagtgagtat taataaaacc ttaataaaac ctaatttaaa
     4261 gccaaatgct tacgaaattc ctaatacaag cttgggaaat gctttaagac aattgcgatc
     4321 tagggcagac ttgagtcaga cttatcagga attttttgct tctttagata atggaataga
     4381 tgtaaagact aaattaaata gaatagaagg ttcagggtat ttaagcactt ttagtaatca
     4441 taatcaatct aatttaatgc aaaataatat gttatttacc cttcatcctc ttaatattaa
     4501 taattttgca caaaacaata atatcttact tgctagtact tatttaccta gaatttttag
     4561 caatgaagaa tatttttggc atcttactcc aagttataaa tactataaag ataaagattt
     4621 ttcaggtcaa aaaacaggtg ctaatatctc tttaggagaa aatttctcat caggcttttt
     4681 agcttatgct ttatctcttt ctagcgctaa atttaatttt aataatggta gtgatttgaa
     4741 gagttataac atggatttat tgcttaatta taaccatgat ttagatttta taaaaatatt
     4801 aagtggatta ggtataggtg taggatttaa tactcttaat cgttttgtag tagagcagcc
     4861 aattgaaggc aaatataaaa cattgcaaac ttcagcccag cttggtgtaa ctaaagatat
     4921 tattttaggt caagatttta tttttaatcc tttaatgtat tttacacata gtttttttta
     4981 tcaagaagat tttaaagaaa ataaaagtcc ttttgctaaa aattatgaaa gtttaaaaca
     5041 tcatagcata aatgcaaatt taggttttaa tcttgctaaa aatatagagc aagatgatta
     5101 tcaagcttct ttttctactt ttgtaatttt tgaaaaaaga atttatggaa gaactttaga
     5161 aaataaggct agttttgttg attttcctat tgcttttatt caaaaatata aattaaaaga
     5221 taatatttta agtcaaggtt ttaattcaga atttttatat aaaaacaatg tattttggca
     5281 gtttatgtta atgaatagat tttctcataa tgcctatgaa ttgcatttaa tgagttcagt
     5341 aggaaaacgt ttttgaaagt atttattttt ttagcttata ataaataaaa ttttaatcaa
     5401 aggaaaaaat tatggaatac agagttgaac atgataccat gggtgaagtt aaggttccaa
     5461 atgacaaata ttggggagct caaactgaaa gaagttttga aaatttcaaa atcggttgtg
     5521 agaaaatgcc aaaggtttta atctatgctt ttgcaaatct taaaaaatct ttagctttgg
     5581 tcaataacaa acttggcaaa cttgatgatg ctaagaaaaa tgctatagtt caagcttgcg
     5641 atgagattat cgcaggtaaa tttgatgata attttccact tgcgatttgg caaacaggtt
     5701 caggcacaca aagcaatatg aatatgaatg aagttattgc aaatcgtgcc actgaaatca
     5761 tgggcgggga ttttcgcaaa gaaaagcttg tacatccaaa tgatcatgtt aatatgagtc
     5821 aaagttcaaa tgatactttt ccaacagcta tgagtatcgt tgcggttgag caagtagaga
     5881 aaaagcttat ccctgcgctt gatgagctta ttgcaacttt tgaaaaaaaa gtaaaagaat
     5941 ttgatggtat tatcaagata ggacgcacgc atttacaaga tgctactcca cttactctag
     6001 cgcaagaatt tagtggatat ctttctatgc ttttacattc aaaagagcaa atcatcgctt
     6061 ctttaccaac tttaagagaa cttgccatag gaggaaccgc agtgggaaca gggcttaatg
     6121 cacatccaga attaagccaa aaagtaagtg aagagctaac tcaacttata ggtacaaaat
     6181 ttatttcaag tccaaataaa tttcatgctt taacaagtca tgatgcgatt aattttactc
     6241 atggagctat gaaaggtttg gctgcaaatt taatgaaaat tgcaaatgat ataagatggt
     6301 tagcttcagg cccaagatgc ggtcttggtg agcttatcat ccctgaaaat gagccaggaa
     6361 gttcgattat gccaggtaag gtaaatccta cccagtgtga agctgttact atggttgctg
     6421 tacaagtgat gggaaatgat gtagctatcg gatttgcagc aagtcaagga aattttgaac
     6481 ttaatgtgtt taagcctgtg attatttata atttcttgca aagtcttgat ttgttggctg
     6541 attctatgca ttcattcaat atccattgtg ctgtaggcat agaaccaaat cgtgcaaaaa
     6601 tcgatcataa tcttcataat tctttaatgc tagttaccgc tctaaatcca cacataggtt
     6661 atgaaaacgc tgctaaagta gccaaaaatg cccataaaaa aggtatttct ttaaaagaaa
     6721 gcacaatgga gcttggtttg gttagcgaag aagatttcaa taaatttgtt gatcctacta
     6781 aaatgatagg cccaaaagcc tagaacatca aacttgcctt ttttaaggca agttaaatta
     6841 aattcttatc ttttaaaatc acatacattc ttaaagttga tacaaaaaag gttaaaatcg
     6901 caggacctaa tataataccc caaaaaccaa aggtagaaat tcctgctatc atagccaaga
     6961 aaattaaaag ttcattgatt ttagtagggg tttttacaag ttttttgttg atccatttga
     7021 tgattaaagg tttgattaaa gtatctgcta taaaagaaat tacaattaca gaataaataa
     7081 aaataacaag agctgagtta agattgtttg aggcaaattc ataaagactt acaggcatat
     7141 aaattaaagc acctcctata gcaggtatga gagaacttac agcaaaaatt actcccatta
     7201 aaattccatc ataaccataa aatattgtga ttaaaccaaa aagcgcacct tgaaatatcg
     7261 ctacaatcac catagagtaa agtacaacag ccataacatt acccacctcg cttaaaacat
     7321 catcaagttc ttttttatca ataggaatga tggatttaag atagataaca agttctgttc
     7381 catatagatt tgcaaagaaa taaaatacgc aaattaaaac catatctata agaaatttag
     7441 ctcctgattt tgtaaaactt gaagcataac ttagaatttg tttagaaata ctatttaaat
     7501 ctatagatgc taaaaattct ttgattttag gttctaaaaa attaaagctt tcaggcaagg
     7561 taaattgata atttttgaca taatcaagag tttgtgtgac taaattaata tcaaaatttt
     7621 ttaaagcttt ggcaagttct atcatagcat aaacaaaagg tgcaaagaaa agcaaaacca
     7681 tacaagttgt tgtaagaatg gaagctaaaa atttatgccc tttagtaaga tttaaaaatt
     7741 tcgcattgat atttgaggta gctaccgcca ttaaactagc tatgataatt acaagtaaaa
     7801 aacctttaaa aaggtaaagc aaaagaaata aaatgactaa aataaagctt ataagaaaga
     7861 attttccatt ttgcaaaatt tactcctcaa ataaagtttt ttcatagttt agttttaaag
     7921 cactataact ttttgcactt gctatacgcc cttttgcagt gcgttctata tagccattag
     7981 ctaataaata aggctcgatt acatcttcta tggtattttc atcttcactt aaagccgcag
     8041 caatacttgc aagcccgata ggtttttgct tagcagcggt taaaagttca agatatctta
     8101 aatccatcgc atcaaaacca agctcattaa cccctaaaga atttaaggcc tcattagccc
     8161 ttttttctgt gataatctct tcatcattaa catcggcaaa atctctaact ctttttaaaa
     8221 gccttagagc tattctaggg gttgaacgac ttcttttagc gatctcaagt gcggcttttt
     8281 cttcgcaagt tttattaagt tttaaagctg ctttttgcaa gatgagggca agttcgctat
     8341 ctttgtaaaa ttctaatcta aattgcatac caaaacgatc acgcaaagga ttgctaagca
     8401 tacctgcacg cgttgtagcc cctataagag taaattttgg taaatcgatt tttatggttt
     8461 gagcagctgg accactacct atgataatat caaggcggta atcctccatt gcagggtaaa
     8521 gcacttcttc gatagcagga cttaagcgat gaatttcatc gataaaaagt atatcccctt
     8581 cgctaagatt ggttaaaata gcggctaaat ctccgctttt ttctatcata ggagcggcgg
     8641 ttgttttgat atttgcactc atttcatagg agatgatatt agctagtgtt gtttttccaa
     8701 gtcctgcagg accactaaaa agtatatgat ctaaacattc attgcgtttt ttggctgcag
     8761 ctataaagac atttaaattt tttttaatgc tttcttgacc tatataacca tcaaaatttg
     8821 aaggacgcaa cgaagtttcg taagtttcat caaaggagta tttttctatt tctactattc
     8881 tatccatatc tttgcttata ttttggaaaa attaaaataa gattttagct aaaatttgct
     8941 agaatttaca ttaaacttta atgattatgg tttaaaaatg ggaattttaa caaaattaga
     9001 attagattat gaaattgacg atatagaaaa atttttacaa ttttttagaa ccatgtgcga
     9061 taggtttgaa cctttaatca tcaagcttgg aagcgatagt gtgcgttata aagaagccat
     9121 aaaagagctt gaaactttag cacacaatac cgcttgggca gcaagacgct taaatcttga
     9181 agaagtgact gatttttgtg tattttgtga agagatgatg gcgcaagcaa atcgctttaa
     9241 tgggcctgct agtgatgaat ttacggattg gatgcttttg atgagtgatc agtttgaaaa
     9301 atattgtcgt tcatatgaaa atgatgattc tgttttagcg gtttttaatc ctttaattgt
     9361 taatgttcca aatattattt ctaaataagg gagcgacttg gcttcgacag gagtaagtct
     9421 gcttagatgg catgtcgctt tgggcaaagc gtaaaaagcc caaataaaat taaacgcaaa
     9481 caacgttaaa ttcgctcctg cttacgctaa agctgcgtaa gttcagttga gcctgaaatt
     9541 taagtcatac tatctagctt aattttcggt catttttgat agtgtagcct tgcgtttgac
     9601 aagcgttgag gtgaaataaa gtcttagcct tgcttttgag ttttggaaga tgagcgaagt
     9661 agggtgaagt agtcatcttt gctaagcatg tagaggtctt tgtgggatta tttttggaca
     9721 ggggttcgat tcccctcgct tccaccagtt ttaaatcaat gtttattgaa atttgaagat
     9781 taataaaaat tcatagttta aagtttttaa ggtgtaaaac cctaaaaact tttagttttc
     9841 cttaaaaagt ttggaagcta agtgcgttgc acgactttga tctgtatctt ttttaagtgt
     9901 tttataaatt ttacttacat attcttctaa ggtttgttga gaatctatga ttttttcaga
     9961 agaaggaatt ttttcatact ctccattgtt tttaagctca taagctaaaa cattatcact
    10021 aagttgcaag cgtaaaaatt gagctaattt agctttactt ctttcatcat atataggagt
    10081 cataagttct aagcgacgct ctaaatttct tggcatccaa tctgcactcg atataaaata
    10141 atttggctca ctatgtttaa aataaaatac tctagcatgt tctaagtatt ttcctatgat
    10201 gcttctaacg cgtatgtttt tgctgtattc ttcatcaggt tttaagcaac aaattccgcg
    10261 tatgataaga tcgatttgca ctccttccat acttgcttca taaagcgctt gtatgatatc
    10321 actatctaca agagaattca ttttagctac aatcacacct tcatttttct tgcttgtttc
    10381 aatgcgtatc atttctaaaa ctttttcttt gatttgattt gggctcattg aaagagtttg
    10441 aaggcgacga tttttgctaa agcccgataa gatgtgaaaa aagcttgtcg tatctcttgc
    10501 aaattctgct ttgcttgtaa aataactcac atcagtatag attttagcac tgcttgcatt
    10561 ataatttccc gtacttaaat gcatataaaa tttaagttta tctccttgtt tgcgtatgac
    10621 ttgagaaacc ttagcgtgga ctttaaaacc tgtaatgcca taaataacat gagctccggc
    10681 attttctaaa gcttttgccc aatgaagatt gttttcttca tcaaagcgtg cttttaattc
    10741 taccatcaca gttacttgtt ttccatcgct tgcagcatca attaaagctt gaactatatt
    10801 ggaatttttt tcaactctat aaagtgtcat tcttatggaa attacttcag gatctttgct
    10861 tgcttctttg ataaatttat aaactggatc aaaactttca aaaggttgta taatgagtat
    10921 atcttctttt tctacagcat caaaaataga taaattctca tcaaaaggtg gtaaagtttt
    10981 aggcgtgtaa agtgggctta aaagatgcgt aaaggtttta tttcctgcga tttgccaaag
    11041 gctagggaga ttgagtaaaa tagaatattc ataaacatct ttatgaaaaa ttttcatgtg
    11101 agtattaaga aattctacga tttgctcatc tgcatctttt tgaatttgca atcttacaaa
    11161 agctcctttt ctgcgaagct tcaagccttg ttctaaaatc atcataaaat catcagcttc
    11221 ttcctcttct attaccatat ctgcatttct agtcactcta aatgctgctg aagctaagag
    11281 tttatagcct ggaaaaattt cttctgcgtg ttgatggact atactttcta taggaacata
    11341 aatatttgca cttacttcat aaaaacgagg taaaactctt ggaattctaa tcattccaaa
    11401 ttttacaagt tcaggatgcg atttatcgca aattttaacc gctagtgaaa aagataagtt
    11461 gtttaaatgc ggaaaagggt gagtagcatc aacagctatt ggaacaataa caggaaaaat
    11521 attagagaaa aaatactcat cacatttttg ttttaaattt tcatctaaat tctcataatg
    11581 ttttatgaaa agattttctt tttctaattc acttgtgatt tcattaaaat aacgctccaa
    11641 aagttctttt tcttggtgta aatatttgcg tatggctttt aattgttgta acggggtcat
    11701 ttcatcgcta ctgcttgcat taactccagc tgaaaaaagt tgttttaagc ctgcgacgcg
    11761 tatcatataa aattcatcta aattagtgca atatatagct ataaatttta atttttctaa
    11821 caagggtaaa tttttagaac attggtctaa aacacgagaa ttaaagcgaa gccaagaaag
    11881 ttcgcgattg ataaacatat caggacttgt ttgcattaat ttttcctttt ttagttgtat
    11941 tttatcattt attttgaaat tattgaataa aagttttaaa tttttttagg ttaattaaga
    12001 gtaaatatat ctttaaaatt atattaaatt catctatgtt agaatcacaa aatttatttc
    12061 tgggaaattc tgtgacattg ttgtttcatt gaagatttta agaaatgata attttaagga
    12121 ggaaaatttt gaagaaaact tcgaatcttt ttactatttt tcttgttttg ctttttgttt
    12181 tctttgcggt tgggttttat actttttata acgctaaggg cacatcttat ttaagcaatg
    12241 caagtgaatc ttgtaataac tgccatatta tgaatgaagt ttataacgaa tacatggcag
    12301 gaccacactc tcaaaaagtc aaaggcgaac caagagcaac ttgtgtggat tgtcatttgc
    12361 cacataattt tgtagctaag tggatagcta aagcgcaaag tggtttagga catgcttatg
    12421 cttttacttt taaacttgat gagttgccta caaatttgag tgcgactgaa aaaagcagaa
    12481 aaatggtgca agaaaactgc atacgctgtc atgcagattt tgctcaaaca gctatcaatg
    12541 ctacaacaaa tccacatgca gacaagtcat taaattgtgc ttcttgtcat aaagatgttg
    12601 gacataaaca cggaatttaa taaggagaag atgaatgaaa aaaaatattt tacgcttagg
    12661 tattgtcgtt ttggttttac ttatagcggg agttttatgg ctaaataatg atatcaatca
    12721 aaaaaaagaa gatgaagcaa ataaaaatgc cattgcagca aatgctgatt tttctttgct
    12781 tagcgatgat gatccaaatt ttgaaaaatg gggtaaggtt tttccagagc aactaaaaat
    12841 gtatttaacg gttgaaaaag aagagcctaa ggctactgaa tttggtggta atttagctta
    12901 ttcaaaatta attcgctttc ctcaattaac catactttgg gcaggatatc cttttagtct
    12961 tgatttcaat gaagaaagag ggcatttttg ggttcaagta gatcaaatga aaacagcaag
    13021 aaacaacaaa gattttctta atgcccatgg acttgctgct tttaaaggtc aacctgcagc
    13081 ttgtatgaat tgtcatagtg gatggactcc atggcttata aaaaatgttg ctaaaggaga
    13141 ttttactgct tttaactcta caaattattg gactatgatt aaaaatatcc cagctgttga
    13201 tggtatagta gaaaattcac ctgaacatgc aggcccacat ggtggtaaaa gaatgggtgt
    13261 aacttgtgca gattgtcaca atccaaatga tatgagttta agacttactc gtccagcagc
    13321 tattaatgct ttagtttcta gaggatatga aaaagatcca gtacaaggcg taaaagctac
    13381 aagagaagaa atgagaactt tagtttgctc tcaatgtcat gttgaatact attttaaacc
    13441 aacaggggaa aaagtaaaag taatgggtga aactattgta gatgatagtt ctaaaaaatg
    13501 gtggaatgga actcagaaaa attatgatga gtatgagttt tggagagatg gcaataaagt
    13561 taaagagatt gaaaccgatg gtatagtttt aacttttcct tggagtgagt ggaaaaaagg
    13621 acaaccattt agaattgaaa tgctagatga ttattatgat aaagttcgtg gagtatttgg
    13681 agctgatttt actcataaat taacaggagc gcaaattatt aaaattcaac atccagaaag
    13741 tgaactttat agtggcggtg tgcatgctgc aaatggagta agttgcgtgg attgtcatat
    13801 gccttatgtt agagaaggag ctaaaaaggt tactcaacac aatatcactt ctcctttaag
    13861 agatattaac tctgcttgta agtcttgtca taaacaaagt gaagattatt taaaagctca
    13921 agtgcttgac atacaaaaca gcgttgcaca tgatcaaaga actgcagagt atgcaattgt
    13981 tagtttgatt atggatacta aaaaattacg cgatgaacta ggcaatatgg aaaaattcca
    14041 aagcgatgga aaagctgatg cgaaaaaaat tagcgaagag ctaaaagaag ttttagaact
    14101 tcatcgtaaa gctcaaatga gagcggattt tgttaatgct gaaaactcaa ctggtttcca
    14161 taatcctcgc gaagcttcaa gaatgttatt gcaagctgtt gatatggcaa gaatgggaca
    14221 aactaaactt gtagaaattg cagcggcaaa tggaattaaa gattttaaaa cttcaaattt
    14281 aggttttgaa gatattcaaa aatttaatcc aggagagctt tattataagg tagatgttaa
    14341 taatcataaa gctggagagc gttactatgc agatgaaaaa gatgttaatg gcaatcctcc
    14401 aaaagaactt ttagagcatg ataaagagct tgctccttat aattatcaag tgattgataa
    14461 aaaataattc ttaagcccta taatcatagg gctttttctt ttctttgttt taaaaaatat
    14521 aaacttttta tttaaaattc acttttgctt cactttgttt tgtcaaaata tcacaaattt
    14581 tgataatcaa aaaggagtta aaatgatcaa taaaaataaa ttgtttagac aggttcatat
    14641 ctatcttagt ttgttctttt tgccttgtgc tttgcttttt gctttaacgg gtatagcgta
    14701 tatttttggt attaatcaag atgtgggctt aaaagttgag cagtatcaat tgtcaaaagt
    14761 tatagaaagt ggtaaagaaa gagaagcttt aatagagtat ttaaaaacaa atggtttaaa
    14821 agtaccatct aatacaaata taattaaaag taaagataaa ggtataacaa taggtggaac
    14881 tcattatagt gctaatataa ctcaaaattc tactaatgaa tacaatatta ccttaaaaac
    14941 aagatcttta cttggagata tgattatgct tcataaagat aagggtgctt ggtatttttc
    15001 tgtgcttagc gtaggttttg gtattacttt atttatgctt tatatttcag ggcttatgat
    15061 tactttgttt gcaaataaaa aagatagaag taaacaattt gcagttcttg gagtaggggt
    15121 tgttgtaact ttgcttttgg cttatcttag cctttgattt ttcctagctt tttaagctag
    15181 gtattattta tttttttgta taatcatact ttactttatt ggacagatgg gtgagtggct
    15241 gaaaccacac ccctgctaag ggtgcagatc ttaacgggtc tcgagggttc aaatccctct
    15301 ctgtccgcca ctaaaacttt cttgaaaatc ccaagtattt tattaagtat cgaagcaaga
    15361 gactagccct tgcgaagtta tattatttta cagcgttttt gatttctaaa atcatagttt
    15421 ttaaagactc tagtccattt ccacttgcta aataccagta ttctggatca agatagatga
    15481 tttttttgtt ttgcgctgct ttggttttag cgacaagtgc attatcgagt atgccttgag
    15541 cacgttcttt gttgcctaag atgacatttc tatcaacaac aaaaatataa tcaggatttt
    15601 tttctaatat aaattcagaa ttgatacttt ttccgtgtgt gcctactttt atattctcat
    15661 ctaccgcgtt aatccctaaa acatcgtgaa taatcccaaa gcgagattga ggaccaaagg
    15721 ctgaaatttt gttagaattt gtaagaatga taagagcttt tttatcttca tcaactatac
    15781 ttttggcttt ttcaatttca tttttaatat ctgaaatttt ttctaaagct tctttttcta
    15841 aaccataaag ttttgcaacg cttaagacat tgttttcaaa agagcttaaa aaatttgcat
    15901 tatcaagacc tacaaataaa gttggagcta tttcttttaa tttgtcataa aatttacttt
    15961 ggcgtccaga aatgatgata agatcaggtt ttaaagcatt aatggcttca aaatcaactt
    16021 gttgtactcc acctacacta ggtttgtttt taaattgttg taggtatttt ggtaaatttt
    16081 tagcaggaac gccaacgact ttatcattta attttaaagc atcaaaagta tctaaaattc
    16141 caagatctaa gatcactacc ttagaaggat ttttagggat tttattttct cctagactat
    16201 ccttcactaa aaaactatca ccctcatcgc tcatactaat aggcaaaact ttcaccgtag
    16261 cagtgttggt ttttgttgta gaacttgcgt tgttttcatt tgagtttgaa ttacaagctg
    16321 ttaagattag acttaaaaaa atgcaaaaaa tgcaaaaact aaagattttt tcatattttc
    16381 tcctttttaa aaataaatac aaattttctt accattaatt tgacttacgg gtatatccat
    16441 atcataaatt tgttttaaat tttcttgatt gatgatttca tcttttgagc cttgttttaa
    16501 aagcttccca tcttttaagg ctatgatttc atcagaataa atcgaagcaa aattaatatc
    16561 atgtaataca acagctatac ttttgttaaa gtctttgact aaatttttca ttagttgcat
    16621 gatttgtacg ctatgcttca tatcaagatt gttcaaaggt tcatcaaaca ttataaattc
    16681 agtatcctga gcgatgatca tggctataaa agctctttgc ttttgtcccc cgcttaatgt
    16741 atctaaaaat tcatttctta agttgctaag ttccatgtat tctaaagctt cattgatttt
    16801 gattttatcg tttgtattaa gtcttccttg agaatgcgga aaacgcccaa aagcgactaa
    16861 ttcttcaact tttaatctta aattgatatt gttttgttgt ttgagaatgg aaattttttg
    16921 tgctaagatt tgctctttat aattttttaa attcattcca tcgatataaa tttctccact
    16981 actaggtttt atcaaacgac ttgctagagc taaaagagtg gattttccag cgccattggc
    17041 tcctattata gaagtgattt tgcctttatg aaaatcaagg ctaagatctg aaataatgac
    17101 tttattatca taaaatttgg tgatattttt tagtttaatc ataatttatt accctttaat
    17161 acaagataga taaaatatat cccacctaag aaattaataa ccacgcttat agtggcatta
    17221 taatcaaaaa ctctagagac aaaaaacacc cctccaagca aagccaaaat actaataagt
    17281 atacaagcgc ttagcaaaat actatgcttt gcagttttaa atagctcata agtgatattt
    17341 actactaaaa gtcctaaaaa ggttatagga cctacaagtg cggtgctaat agaagttaaa
    17401 atagctatga taatcatcaa ttgttttgaa attttttgat aatttatccc taaatttatc
    17461 gctaaatctt tgcctaaatt taaaggatct aaaaatttca tatagcgaaa aatccatata
    17521 aaacttaaaa agctaataat ataagcaaga attaaaacat caaaagcaat attatcaaaa
    17581 ctagcaaaca ttcttccttg tattaccatg aattcatcag ggtcgattag tacttcaaaa
    17641 aaagagctta aagtgctaaa aagtgttcca aaaactaaac ctaaaagcat gataagataa
    17701 atacttctat cactactaaa taaaatctta taaagtccta gtgaaaaaac caccatacaa
    17761 actagagtga ttaaaaaatt gatatcgttt ttataaacac ttaaattagc cgcaccaaaa
    17821 gaaaagataa gagcactttg aagcaacata tataaagaat ctaatcctat gatagcaggg
    17881 gttagaattt tgttattgca taaagtttga aaaatcactg ttgaaacagc gatacaaata
    17941 gctactataa taatagccgc aatttgtaaa aaacgacttt ttaaggcata ctcatcaaag
    18001 ccatttaaac ccacaaatat aaaaatccct atcatgttaa gtgttaaaaa gcttaaaatt
    18061 agcatttttt tacgcataaa ctttcctttt tagtaaaaga aagataaaga ttaaagaccc
    18121 taaaacacct gtagtgatac ttaaaggcat ttcaaaagga aagataacaa gtcttgaaat
    18181 gatatcgcaa acaagtaaaa acaaagctcc acaaagtgct atatagataa gattttttct
    18241 aagattatca cctagataaa gagctactaa atttgggata attagcccta aaaaagggat
    18301 aatcccaacg cttacaatca ctaagctagt gataatgctt acaatcatta agcctaaaaa
    18361 taatatacca ttataagaaa ttccaagatt taaagctata tcttcaccca tgccaactat
    18421 ggtgatttta tgagctaaaa aataagcaag tataaaaagt ggtaaagaaa tgtagagcaa
    18481 ttcataattt ccctgtataa catttgccat actgccttgt agccaacctt ggatattttg
    18541 tatataattt aaagcatagg caaaaaaagt ggttatagca ctaataatac ctccaaacat
    18601 caagcctatc aaaggtacaa aaatcacatc tttgagtttg atttttctta aaatttggat
    18661 aaatataaaa gaacccaaaa gtgcaaatat agaagcaatg atagcttgag tgaaaaaaga
    18721 cgctccagta aaaaatatta aagaaataag tatgccaaat ttagcacaat ccatggtccc
    18781 tgctgtagtt ggggaaacga atttattttg cgtgagttgt tgcatgataa gcccacatat
    18841 actaagactc attcctgtga gtaaaatcgc tataagtcta ggaattcttg tgagagttat
    18901 gatttctagt tgagtggagt taagattaag aatatctttt acattgatac tgataactcc
    18961 tataaataaa cttatcattc caaagaataa aagtaaagct ataagcactt ttaaactcaa
    19021 tatatgctta aaaaacaaat ctttccttat agtaataata attatcaaaa atgaaattgt
    19081 aatgaaattt gttttaagaa atgataaaac tataaaggat attttagtaa gaaatcaaaa
    19141 atccagtgga aagtctttgc aagtgtttgt tatagtctat aaggctttct ccatagccat
    19201 taaagtattg taaataccaa taaattccgt tattaaaaat atcatatcct agatcaactt
    19261 gtatagcgcc tttgttattg tggaatttaa gattatttct tagcataaga ttgataaaat
    19321 aatcatcacc taaatacgct aaattcacat caaaatttcc catataatgc aagatggcag
    19381 gattatcatc atcttttttg ttttcaggaa ttctatacca aaggcgtgga acaaataaaa
    19441 atttattata taaaatagca gtagatacat aaattctatt ccatgagcga gattgtaaat
    19501 tctcatctcc cttgccattg ctttcatgca atatacctac gcgtagattg ttaaaaaatt
    19561 cataatcttt aagatataaa ggaagatcta taaaaaattc tggttgatag ttggtttctc
    19621 taaaaggaga agaatgctca taaatttgcc accaagaagt ttgagtatag gctatataat
    19681 atttttcatc tagtcctagt aaattttcaa aaagtctttt tttaacacta agttggaatt
    19741 tcgcctcact cttattatta tttgttccta aagaattaaa actataagta aaaggtaaaa
    19801 aataattcat cttataagag ctaatgccaa ggggattaaa gctttcattt tcaccaagat
    19861 aattagccaa agctaagcga gaaaagtctt gtttttcttc tttttttata gtgatagaat
    19921 tttgcatttg tgttgcttgg cttgagttat tttgttcttg agaaatcaaa acagatgaat
    19981 tttttaaagc gagttttttg taaatttcca tagctttttt ataatcgcct tgtttttcat
    20041 actctaaagc ttgttgtaaa tcactagccc atataaaaac gcataagctt aaaaataaag
    20101 caatttttct cattttaact cgcttttaaa tttttcatat tcttcataaa aattaagatt
    20161 taaaaaagca tcttcatctt caaattctac aaatttggtt ttaatctcag aaaataaaag
    20221 tcctattttt tgttcatttt tttctaagaa atttttacaa gtttgagcta aagagctgtg
    20281 ataaaagcca cataagggat gtttatgcaa aggggttttt gctatgatta ttttatagtt
    20341 ttgttctaaa aaaggaagca tttttaaaag ctcattttca cctactttag gactatctac
    20401 acttaaaaca aaaacaaatt catttttaaa atttgaaagt atagagtaaa gcgcaagcat
    20461 aggagagtaa acttcaaatt ctaaagaatc ttttatcaag ctaaaatggt tttcaaattt
    20521 gtcttctttt gcactcacat agacattttt aaaaatttta gaaaatttct ctacttgaaa
    20581 ttgagttaaa ttttgatttt taagaatcaa tttgctttta tcttgtccca tacgactaga
    20641 tttgccacca cataaaatca cgcaatttag ctcattaagc tgcacaaatt tcctttttta
    20701 atgtaattct accacaaatt cgccaaaata ttttataatt tcttttatga aatacacaga
    20761 acttttacaa ttgcaaactt ttttttctca gtttaaaaaa atcgatttta tcaagcgtat
    20821 taatgacaat attttggaat taagctttga tagagaaaga tttatttttg atctcactcg
    20881 tgcaatgagt gcgatttata cggctaaatt taatgcaaaa aattataatg caccttttga
    20941 ttttatgctt aaaaagtatt ttagcaatgc ttttataaag gaagttaaag tccttgaagg
    21001 caatcgtatt ttatgtttta gtgtaaaagc taataaggct tataaaagct atgagagcaa
    21061 gatttatttt gaatttacgg gtaaaaatac caatgttatt cttacagatg aaaaagattt
    21121 gatcatagag gctttaagac acattgataa aagttatcgt gttgtaaaac ctaatgtgat
    21181 tttagagcct ttaaagcctt ataaaatgga tgaaaatttt gaggaaatca aagactttgc
    21241 agattatttt tctcgcaaat ttacaagcat ttatgagagt aaaatcaaac aaataaaaaa
    21301 tttaaaactt gcacaagtag ataaaaaaat acaaaattta caagaacttt tttctagtct
    21361 agatgaagaa aattctttac tcttaaaagc tttagaatac agaaaaaggg ctgatgtatt
    21421 gtttgcaaat ttgagtgttt taaaagatta tgaaagggaa tttaagcttg atgattttga
    21481 aggcaaagag cttgaattta agcttgaatt tagtcctaag cgaagcgcta atttatatta
    21541 taaaaatgcc aaaaaattag aacaaaaagc taaaaattta aacatacaaa ggcaaaattt
    21601 aaaagaaaag ttagatttta ccttgagttt gaaagaatta ttgcttcaag ctaagagtga
    21661 gatagagctt gaaattttac tacctaaaaa aaatagcaaa aaaaatcaag attataaaca
    21721 agaagatctt gtggcaaatt tttattacaa tgagtttaaa atttgtgtgg gtaaaaatga
    21781 aaaaggcaat gaatttttac ttaaaaatgc taaaaaagat gatttgtggc ttcatgtaag
    21841 ggatattcct agcgcacata ctttgattgt atcaaacaag caaaaaatca gcctcgatgt
    21901 gatagaattt gctgcaaggc tttgtgtaag cttttctaag ttaaagaaag gttcgtattg
    21961 ggtcgattat accttaaaaa attttgttaa ggttcagcaa aaggcgtttg taaattatac
    22021 aaattttaaa agtattaata tcacaaagga ttaaaatgcc agttagccct ttaggaaata
    22081 tcaattatat aaatcagaat atggcttatc cagctacaca agcaagcaat gagcttgcaa
    22141 aagaaggttt tgcagctacg ctaaatatgg ctgaatttaa tgaaaaagaa aaaactttaa
    22201 acaagcttga aaaagtcaat gagactcatg aaatcaaaga agagatcaaa gaaaaagccg
    22261 aacaagaaga aaaaaagaaa aaacacaatc aagaagctaa aaccagcgat gatgagaaaa
    22321 atgaagaaga tgagtctaaa gatccaaatt ttaaagacgc acaaagcatt catcgcctag
    22381 atattagtat ataaggaaaa atatgtttaa tacaactaga attatttcag ctcttgtgat
    22441 gataggggct attattatta tcgcgttgat tgatcaattt tttatcaatt ttatcgtttt
    22501 tgcggtttta ttgtatttat cttttagtga agcaaaaaaa ctttttgctt tagaaaatat
    22561 ttctattatc cctttggcta tagcttttat tttgggaagt ttatcgcata aagctttgct
    22621 ttttgggatt ttagctttgt tattagtcgt tggatatttg gtttataaaa aggcttcctt
    22681 aaaaccagct cttatttata tttatcctag tttgcctatt ttagcacttt ggcaagtgta
    22741 tttagatcag ggtatgtttg cgcttttttg gcttatcatt atcgttgcag cttgcgatag
    22801 tggggcgtat tttatcggaa aacttatggg taaaactcct ttttctccaa caagtccaaa
    22861 caaaacctta gaaggtgtta taggtggctt gatttgtgcg agtgttattg gaactatttt
    22921 gggaattttt gtttatagtt tttggctttc tttactttgt tcgttttttg tagcgatttt
    22981 tgcagtgatt ggagatttgt ttgagagtta ttttaaaaga gaagcaggtg taaaagatag
    23041 tggagatctt atccctggtc atgggggcgt gctcgataga atcgatgcag tgatcattgc
    23101 tgcttttgtg atggttactt ttttatgata ctttttggaa gtacgggcag tataggagta
    23161 aatgctctta aacttgctgc tttaaaaaac attcccattt ctgctttagc ttgtggggat
    23221 aacatcgctc ttttaaatga gcaaatcgca aggtttaaac ccaaatttgt tgccataaaa
    23281 gattcaaaaa ataagcattt agttaaacac gatagagttt ttatagggca agaaggttta
    23341 gagcaaattt taacagaatg tcaagataag cttttactca atgccattgt aggttttgca
    23401 ggacttaaaa gcactttaaa ggctaaagag cttggcaaaa acatagcttt agctaacaaa
    23461 gaaagtcttg tagtagctgg gagttttttg aaaggggcta aatttttacc cgttgatagt
    23521 gagcatgcag ctttaaaatt tttactcgaa ggtaaaaaaa atatagcaaa actttatatc
    23581 acagcaagtg gtggagcttt ttataggtat aaaatcaaag atttaaatca agtcagtgtc
    23641 aaagatgctt taaaacatcc taattggaac atgggagcaa agatcactat agatagtgcg
    23701 actatggcaa ataagctttt tgagattata gaggcttatc atttatatga ttttaaagaa
    23761 attgatgctt taatagaacc aagatcttta gtgcatgcaa tgtgtgaatt taaaaatgga
    23821 gctagcacgg cgtatttttc aaaagcagat atgaaactag ctatttcaga tgctatattt
    23881 gaaaaacaag atacgcctat tttagaggct gttgatttta gcaaaatgcc tgctttaaaa
    23941 tttcatccaa tcagcacaaa aaaatatcct atttttaagc ttaaaaatac atttttaaaa
    24001 gagccaaatt taggtgttat catcaatgct gctaatgaag ttggtgttta taatttttta
    24061 gaaaataaaa gtggattttt aggtatcact aaatgcattt ttaaagccct tgatcatttt
    24121 ggagtgccta aaatttcaag tatagaagag gtttttgagt atgattttaa aacaagagag
    24181 tatttaagga gttaaaatga aatttttttt aacaatttta ttttttataa caagcatttt
    24241 tgctttagag ctagacttta gcgtaggaga aaatggaaaa agtctagatg ataataatac
    24301 agttttaatt tttggtggaa ttcaaggtga tgagcctggt ggatttcatg cggcaagttt
    24361 gcttttgagt gattataata tcaccaaggg taagattata gtggctccaa atttagcttt
    24421 tgatagcatt atcaagcgtt cgcgtgggaa taatggggat ttaaaccgta aatttgcaag
    24481 cattagccca aaggatcctg attataaaac tgtgcaacgc attaaagagc ttattttact
    24541 tcctgaagtt agtatggtga tcaatcttca cgatggttgg ggtttttata aacctactta
    24601 tatcgatgcg atgcaaaatc ctaagcgttg gggaaattca agcgtgattg acacaagtga
    24661 aatcaatgca agcaaatacc ctgatcttga aaatattgcc actcaaaccg taaatagtgt
    24721 caattcttcg cttgctgatc caaagcatgc ttatcatctt aaaaacacca aaacccaaga
    24781 gcttggcgat atggaaatgc ttaaagcttt gacttatttt gtgatttcaa atcacaaagc
    24841 cgcttttgca aatgaagcga gtaaaaatct gcctgtaaat ttaagagctt attatcatct
    24901 tttggcaatt gaaaattatt taaaaactgc aggaattgaa tttagtagag attttgaact
    24961 cactccacaa ggggttgata aagtcataaa taaagagctt gaagtaaaac tttttgatga
    25021 tagaatttta ctttctttaa aaaatccaag aaagcttatc aactatgtgc cttttccggt
    25081 aaataaagag ttaaattata acacaagcaa tgaacttacg gctattatcg cagaaggaaa
    25141 ttctttttat atccagtatg gcaatcgttt tcaaacaaga ttatatcctg agtatttaga
    25201 atttagcgat gcttttaatg aggtaacttt tcaagttgat ggcaatgaaa ccaccgttcc
    25261 ttttggaacc aaggtgaaag taaaagagaa ttttcttatt ccaaagatag ctaatgtgcg
    25321 cgtaaatatc ataggctttg atcactcaaa agatgaaagt ggtattttag ttcataaaaa
    25381 aaatatgcaa acacaatatt ctttagatat ggcaggtaaa atttatagag tggaatttta
    25441 tgagttaaga ggggcgaatt tgcaacaact tttagaagca aataccaata gcaagttgat
    25501 caaaaatgct aaaaatttgg atttaaacac tcttaaaatg gcaagatcaa aagataaatt
    25561 cttaggttct attttagtgg aatttgaatg aaaaatctta tcctagctat agaaagttct
    25621 tgtgatgata gttctatagc tatcattgat aaaaatacct tagaatgtaa atttcataaa
    25681 aaaatttccc aagaattaga tcatagtatc tatggaggag tggtgcctga acttgctgca
    25741 aggcttcata gcgaggcttt accaaagata cttacgcaat gcaaagagca ttttaaaaat
    25801 ctttgtgcca tagctgtgac aaatgagcct ggacttagtg tttctttgct cagtggaatt
    25861 tctatggcaa aaaccttagc aagtgctcta aatttacctt taatccctat aaatcatctt
    25921 aaaggtcata tttatagtct ttttttggaa gaaaaaattt ctttagatag gggaattttg
    25981 cttgtcagtg gtgggcacac tatggtgctt tatcttaaag atgatgcaaa cttagagctt
    26041 ttagcaagca caaatgatga tagctttgga gaaagttttg ataaagtggc taaaatgatg
    26101 aatttaggtt atcctggtgg ggttatcata gaaaatttag caaaaaatgc caaacttaaa
    26161 aatatctctt ttaacacacc tttaaagcat tctaaagaac tcgctttcag tttttcaggg
    26221 cttaaaaatg cagtgcgttt agaaatttta aagcataaaa atttaagcga tgatataaaa
    26281 gcagaaatag cttatgcctt tgaaaataca gcttgtgatc atatcatgga taaattagaa
    26341 aaaattttta atctttataa atttaaaaat tttggcgttg taggtggagc gagtgcaaat
    26401 cttaacttgc gttcgcgttt gcaaaattta tgtcaaaaat ataatgcaaa tttaaaacta
    26461 gctcctttaa aattctgctc tgataatgct ttgatgatag caagagccgc agttgatgct
    26521 tatgaaaaaa aggaatttgt aagtgtagaa gaagatattt taagccctaa aaataaaaat
    26581 ttttcaagga tatagatgag aaaagctttt accatattag aacttgtttt tgtgattgtt
    26641 atcttaggaa ttttagccgc tattgcttta ccaaaaatga gttcaagcaa ggatgaagcg
    26701 gagattagca agtctttaaa caaccttaaa actttgatca atgacataag catttatact
    26761 ttaaaaaatg atcatttaag ctctataaaa acgatgagta atgtaagtgg ggttgaaaat
    26821 gtcgatcttg gcaatttcaa tggcacaaaa gaagtaaatt ttcgcgtagg cgatgataaa
    26881 gaatgcttaa aacttgtttt tatagataga gcggatttta tactcatggg aatttcaagt
    26941 aatgaagcaa gcaaaaatgc tatcatcaac gcagccaatc aaagccatga agatttagaa
    27001 aatatagact ttacaagctc ttctagcaat aaagcttgtg tgatcttaag taagaatgaa
    27061 aattttaaaa acctagcaag taaaacttat cttttaatag gggaaatgta atgatagtga
    27121 gcaaagctta tgagattgac tcttgtgatg atgtagagct tggtataaaa agagaatcaa
    27181 agcttgaatt taagctttgg tatgatgatg aaaaaacacc tgaagccttg gtgtttgtgg
    27241 tgcaaggtat gggtgatgat atatcatcga tccaatatgt tggtgattat atggtaaggc
    27301 aatttaatac tgctgtagtt ggagtaaatt atcattgtat tggcaatcgt cctcaaactg
    27361 gatcaacttt ttatttagat gatatagaca agcttatttt aaaagcaagt tgtgaagctg
    27421 cggatatcaa gcttccttat gatgttgata aaattcaaga ctataaacaa atgagtgaaa
    27481 tttttcattt tattaactat agcattgtcc aaggcaagca aaaaggtaat tttacaccaa
    27541 attatttttt aaatttgcat gtgagtttgc aaccgacaaa aaacgagtat caaaattttg
    27601 ggatcatgca agctcaagat cttttaaatg tcacacttta ccttaaaaaa catgctcctt
    27661 ttgatactat gggggggggg tatacccgtt attatgatag gtagttctca tgggggatat
    27721 ttagcacatt tggcggctaa gattgcacct tggttagtag atggagtgtt ggataattct
    27781 gcatacgcga agtttttatg gagagttgta ggttttggaa aggaaataga ttttatgcag
    27841 tgtagtgaat tttctacttt tgattttttc catcatatta aaacacattg ttcgacaaaa
    27901 actttttgga caagtaattc ttcatcgcct cgtttttttt ctcccgcaag aagaaaaatt
    27961 cgaaatcttt tagaggaaga tcatctttta gaacaatcaa aatgtttaaa aacttgcttt
    28021 ataagttatc attcgttata tgatgagtat gtttctttaa aagaaaaaac tatgttctat
    28081 gaagagcttg agaaacttgg ttttgatgta actttgtgtt ctgttactaa agaatctcaa
    28141 gttgatggaa aatttattaa aaacttaaat catggcatgg gaattccggt aaaacttttg
    28201 attaagaaag aacttccttt aatgctagaa aaaataaaac aaaattcaaa aaaagattat
    28261 aaagaaaaat gtatctctta tccttgcgag gatttgttgt atcaatttag cgaaaaagat
    28321 gacaaaatgt cactaaaaat agataaaatt taaggaaagc taatgaccct actagaaaaa
    28381 aacatacaag ctttattaag tgg
//
LOCUS       DAPIWQ010000004        26706 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.004, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000004 DAPIWQ010000000
VERSION     DAPIWQ010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26706)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26706)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26706
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.004"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(67..891)
                     /locus_tag="RJ267_000128"
     CDS             complement(67..891)
                     /locus_tag="RJ267_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDV7388019.1"
                     /translation="MPQLSIIIPLFNSCNFISRALQSCINQTLKDIEILIIDDKSKDN
                     SLNMVLEFAKKDPRIKIFQNEENLGTFASRNLGVLHSSSDFIMFLDSDDFLTLDACKI
                     ALKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDEFFNQKEFLEFLSKQRHFCWSVWAKC
                     FRKDIILKSFEKIKIDERLSYGEDVLFCYVYFMFCEKIAVFKTCIYHYEFNPNGRYEN
                     KNKEILWQNYQDKKKSNELVKKLCLNFKNNDFHKKLFEVLEKEEFDLQRRVDEARN"
     gene            950..1909
                     /gene="waaF"
                     /locus_tag="RJ267_000129"
     CDS             950..1909
                     /gene="waaF"
                     /locus_tag="RJ267_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HDV7388020.1"
                     /translation="MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTAL
                     FKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFAFRSAFSSKIILHILKTKQRYFF
                     DKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
                     SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLV
                     HLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL"
     gene            complement(1890..2450)
                     /gene="gmhA"
                     /locus_tag="RJ267_000130"
     CDS             complement(1890..2450)
                     /gene="gmhA"
                     /locus_tag="RJ267_000130"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HDV7388021.1"
                     /translation="MINLVEKEWQEHQKIVQASEILKGQIAKVGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP
                     SDDTARIQEMHILIIHTLCQIIDESF"
     gene            complement(2447..3832)
                     /gene="rfaE1"
                     /locus_tag="RJ267_000131"
     CDS             complement(2447..3832)
                     /gene="rfaE1"
                     /locus_tag="RJ267_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HDV7388022.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLIAKTLK
                     EDKRLGGAANVYANLKSLGADVFALGVVGDDESGKFLQENLKGEFLIQKGRKTPFKNR
                     IMAHNQQVLRLDEEDISEILLENELIALFDEKIKDFKAVVLSDYAKGVLTPKVCKAVI
                     EKAKVLNIPVLVDPKGSDFNKYSGATLLTPNKKEALEALKFENLEGENLEKGIKKLKE
                     DFSLRYSIITLSEAGIALFDEGLKIAPAKALEVYDVTGAGDSVIAVLAFCLANEIEIF
                     KACELANEAAAVVVSKIGSVSVSFDEIKSFKRVDFEKKIKSKEELLVLLKQNNKKIVF
                     TNGCFDIVHFGHIKYLDKAKRLGDVLIVGLNSDASVKRLKGESRPVNSEFQRACMLAA
                     FYFVDFVVIFDEDTPLELISFLKPDILVKGADYKDKLVVGADIVSRVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            complement(3825..4778)
                     /gene="rfaD"
                     /locus_tag="RJ267_000132"
     CDS             complement(3825..4778)
                     /gene="rfaD"
                     /locus_tag="RJ267_000132"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HDV7388023.1"
                     /translation="MKIAITGGAGFIGSQLALNLQEKHEILIIDKMRSSATFENGNLQ
                     SFGHFKNLLEFDGELFAGDINDEKVLKKIEDFKPEIIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTVGKDEEPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKNKTASMVLQFGHQILAGKNPRLFEGSDQIYRDFT
                     YIKDVISANLIALDSKCGVYNVGSGKARTFQDIVDILQKELKTDLPCEYIPNPYVKSY
                     QFHTEAKLDQTWNYQPKFSLEEGIKDYLGEIKRLFEKEVNA"
     gene            complement(4779..5339)
                     /gene="gmhB"
                     /locus_tag="RJ267_000133"
     CDS             complement(4779..5339)
                     /gene="gmhB"
                     /locus_tag="RJ267_000133"
                     /EC_number="3.1.3.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-alpha-D-manno-heptose-1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HDV7388024.1"
                     /translation="MFIFFLKKLYYNVFMKTKALFLDRDGVINIDKKYVYKIEDFEFC
                     DGIFELCRYFLARNYLLFIATNQSGIARGYYKESDFFKLCDYMLKEFAKQDIKIDKIY
                     HCPHLEGCECRKPKAGMLLKAKDEFDLDMKNSIFIGDNLSDMQAGLNADIGTLILVNE
                     EKKEGDFFRQFKNLKEILNFFKEKDI"
     gene            5421..5723
                     /locus_tag="RJ267_000134"
     CDS             5421..5723
                     /locus_tag="RJ267_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HDV7388025.1"
                     /translation="MKKLLVVSALACLGVSAFAADGATLFKKCAVCHGANADKVYLNK
                     VPALKTLSSAERLQYMKEYSEGKRNAYGQGAIMKLNLKGLTEEDFKAIEAHIETLK"
     gene            complement(5746..5952)
                     /gene="ccoS"
                     /locus_tag="RJ267_000135"
     CDS             complement(5746..5952)
                     /gene="ccoS"
                     /locus_tag="RJ267_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HDV7388026.1"
                     /translation="MNSIIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKFTTLNDD
                     EDSLRDAIELERRKKEALDKKRLS"
     gene            complement(5949..8306)
                     /locus_tag="RJ267_000136"
     CDS             complement(5949..8306)
                     /locus_tag="RJ267_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HDV7388027.1"
                     /translation="MIMKCEHCKLDYKQAQMIEYKGKIFCCKGCESVWEILHESGLDE
                     FYEKLGNQTLSPVNFQNEMKNYDEFITKTKEGFSEIYLMIHGIECAACVWLNEKILTK
                     QEGILELDINHLNHKARIVFDEQSISLVQILRLIESIGYKASAYDASKASKKADLLKR
                     EFYSKLVVAIACVMNIMWIAVAKYAGFFSGMDKDTKDILNFAEFILCSPVLFYTGSHF
                     YKSAFKTLKMHSLNMDVLVISGASLAYVYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTIDGLNDFLQNEVLVFNGKEFVSKEVQKVCLGDRILLKTGDKILIDG
                     ICKSGEMSVDTSSLNGENTPKLIQKEDEIFSACIVLDGSVEYEATKLYKDSKLSQIIQ
                     LLELASSKKAKLESLVNSLLAYFSRTVLLIAFICFAFWFFYKEESFEISLVNAIAVLI
                     IACPCALALATPVSNLVALGRALKKHILFKSSSVIEDLSKCDCVVFDKTGILTKIELE
                     LKEVFLDKALDLNELYNFVKLSKHPISQNIVLYLKQKGAKDLNLDFKKHSSIQAKGLS
                     AELNEGLLLGGSSKFLQEKGIVAKEFDNTHFIFAKEGKILAFFEFDSVLREGAKELIA
                     YLKKEKKELMILSGDHQKAVEKIAKKLEIQNYQASCLPEDKMKTIENLSKNYKVLFVG
                     DGVNDALALKYASVSMTLREGSDLAIESSDVLLLKNDLLSLKKAIKLSKNTFKIIKQN
                     LAFSLFYNACTIPLAFLGMINPLFAAISMSFSSIIVVLNALRIKE"
     gene            8415..9713
                     /gene="rho"
                     /locus_tag="RJ267_000137"
     CDS             8415..9713
                     /gene="rho"
                     /locus_tag="RJ267_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HDV7388028.1"
                     /translation="MEKEKKQHQRTHVPVEGYKIEELKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IKKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQ
                     KIWAIRSAISQMDDVEALKFLYSKMLKTKDNVELLSIMNE"
     gene            9717..11252
                     /locus_tag="RJ267_000138"
     CDS             9717..11252
                     /locus_tag="RJ267_000138"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HDV7388029.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLT
                     LLDQAIIFCQNEISISKITDMLGFLDPQKIKTFYQAILTKDKEKVFAYLEELQDYEAS
                     SVIDEMLFYLKESFFAKSTEFSTLIYERFFRILSKAKNMLCDDDGFTLCVMAFMMMEA
                     SHLKEIDAQIQEIKQENMTNITPRITPAPIIPNLEKKIEKNAYEILLDSIYDRDFNLA
                     ECFKQSTKFISFENNTLNISSNAQGQNRDTLNKGFKLIQELFKAKFGENAKINVQKAL
                     TIDENKLQSLTQELPNNENKNIDIQSSINMLKEGAKKFDPQEDLKEALKDCFGNPQIQ
                     NID"
     gene            11332..13233
                     /locus_tag="RJ267_000139"
     CDS             11332..13233
                     /locus_tag="RJ267_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HDV7388030.1"
                     /translation="MQRRDFLNGMALAVVAGMTPLQLLYGKDSKIEDFTKEYYPPNLL
                     GLRGSNNKSYKYAHMLRDGDKFGFSSIKPKENYDLVIVGAGISGLAAACFYQQKFGEN
                     KKILILDNHDDFGGHARRNEIQLDEGTILSYGGSESFQSPKALYSKEVIELLKSLGVS
                     IDELAKRFDVNFYPDLKLSRGVYFSKENFGVDKVVNGNPRKVICDDIPDSKNNGKSIE
                     NFIKDFPMTSKDKRELISLFKSNKDYLKGLSKEEKEEYMAKTSYKKFLEEKVKLSQKA
                     ITFFEGMTDDFLALGIDAISCEDARISFLPGFDKLGLDPIEGEALAEMEEPYIYHCAD
                     GNATVARLMVRKLIPTVSQKGKDMDDITLAHFDYSKLDDSNNKVRLRLNSTVIHVENT
                     KNGTLISYINQGKKYRIKAKNVVMANYNNMIPYIIPSLPKEQKEALSKNVKTSLLHTK
                     VIISNWEPFIKLGVHEIYSPKMPYARTKLDYPVDMGGYHHPRDPKKPICIHMVCSPLA
                     LANIQGIDLEGLDARDRARVGRNLLFTMSFEEHEKIIRGQLQGMLGTAGFNHEKDILA
                     IVVNRWGHCYSYTENSLYDDPKIAEQTRLIARKPFGNIVIANSDSDWSAYMHSAIDQA
                     YRAINEIKA"
     gene            complement(13223..15328)
                     /gene="copA"
                     /locus_tag="RJ267_000140"
     CDS             complement(13223..15328)
                     /gene="copA"
                     /locus_tag="RJ267_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase CopA"
                     /protein_id="HDV7388031.1"
                     /translation="MEELRIKIGKMTCVNCSNAIERACKKIDGVKDASVSYVNSSGVF
                     LLEDQKKRKDIIAKIKNLGFEILEDEQSLNAYKAKKHLELRKNLLLSIVLSVIIMYFE
                     MFVKSSFSQNIQMALSFFGIFYCGRDFFSHAFLGFKSKNLDMNTLVALGTLSAFVYSF
                     LVYLQIFKEEDLYFSGAMMIISFVLLGKYLESKAKFKAQDYQRILENIDTKKTKILLE
                     DESIKEISSSFVKSGDVLLVKEGESIVADGVVLLGSAELDMSFLNGEFLPVLKKEGDE
                     VQAGAVVLNGALRIKANKKAMDSTLEQIKNLVFEAGSIKSPLANLADQISKYFVGGII
                     FFAFLVFVFWVLKADLNTAFLHSCAVLLISCPCALGLATPIALVVASANAAKNFILIK
                     NPAALEKLALVKYAFFDKTGTLTKENLSIFKHNLSKDDFDKLCQIESLSSHPIAKALH
                     KDHFFDLKGEGRVIVGSGIKYKEDNDIYLAGSAKFLHENEIDTKESDIFFDTFKEYIR
                     VYFAKNKKCLGGVLLSNALKDGAKELVLNLKKQNLKTFILSGDHVKNVEKIAKELQID
                     EFHAQLKSEEKLQIIQKFEKTLFVGDGINDAAALSAASVSISFSKANELAKKTGDFIL
                     IKDDLSAIFKCFKLAKKTRSIIKLNLFWAFIYNVLCIPIAAGFVPFIALSPHIAALAM
                     CFSSVTVVFNSLRLRKSKP"
     gene            complement(15328..15522)
                     /locus_tag="RJ267_000141"
     CDS             complement(15328..15522)
                     /locus_tag="RJ267_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal transport/detoxification protein"
                     /protein_id="HDV7388032.1"
                     /translation="MKFKVKNVNCMNCVNLIKNSLEDEFGNIEVDLEQKILSLNLEEN
                     QVSNFTKEFQDLGFEIVERL"
     gene            complement(15512..16462)
                     /gene="czcD"
                     /locus_tag="RJ267_000142"
     CDS             complement(15512..16462)
                     /gene="czcD"
                     /locus_tag="RJ267_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HDV7388033.1"
                     /translation="MYKFLSHEPLANKSCHHNHEEHSHEHHHSHADARSVDKKILKIS
                     LLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQKTFG
                     YFRLEVLVAFINALTIILSALFIIYEAIEKFINPKEIDAKTMIIVAILGFLVNGINAL
                     MMFKGANLENVNMKSAFLHMMSDLLGSLAVIIGGIVVYFSDIVYIDTILAIVLSILLL
                     RWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLHITQITNKMLVASMHLK
                     VRVCNLKEFEKLSQDLSHKLLHEFEIGHITIQPIRSENEI"
     gene            complement(16538..16801)
                     /locus_tag="RJ267_000143"
     CDS             complement(16538..16801)
                     /locus_tag="RJ267_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HDV7388034.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERSV
                     PNTANFNQAPRQESRYNDSAYHQHNDYYKKKKKESWLGELFDF"
     gene            complement(16871..17365)
                     /locus_tag="RJ267_000144"
     CDS             complement(16871..17365)
                     /locus_tag="RJ267_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HDV7388035.1"
                     /translation="MIEFILRDMFFAAVAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLVEYFHFQTLAIATFVASFCIGCLGIVLAKIIKTPAEIIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTVSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            complement(17362..18138)
                     /locus_tag="RJ267_000145"
     CDS             complement(17362..18138)
                     /locus_tag="RJ267_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HDV7388036.1"
                     /translation="MEKPDIQRLTNFLIVYTKTLLGAGTYTARVAKCVGRIAEVYGYE
                     ININFFFHHITLNVVDMDDNSIQRTYVIPNHHAHVNFKLIFDLSALSWAIYDHKYDLE
                     KAKVVFGQISQQKKHSYLLNLLFVSMANSAFCRLFGGDFGAGNLVFFATFVGLLLRYI
                     LTKAKIDLRIQYILCSFISSWFVFFGLDMGYTNTSDVALGSSILYLIPGVFFINSVID
                     ILKDHILMGLSRIISVAILICCIALGIYMTLSISDFGILR"
     gene            18205..19170
                     /locus_tag="RJ267_000146"
     CDS             18205..19170
                     /locus_tag="RJ267_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002916444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HDV7388037.1"
                     /translation="MAKIGIVGLGYVGSASAYSIATQGICSELYLYDIKQDLALAHAR
                     DLEDMSAIHFSYTKIFHVPNLENLASCDIIILAFRKESLKELPSRLVELQNNILELKD
                     IVLTLKNANFKGKYIVATNPNDTITYYTQVLSQLPKNHVFGSGTNLDSSRLKKFLAKD
                     LNINSKDIFACMIGEHGDSQFAALSNASVLGQNLLDFYKQKLGKDLDIQELEKAVISE
                     GYFIYERKGRTEFGIGTSCANLAKAILEDRKSLHPVSVVFDDIAFSMPAIIGKDGIEK
                     VFELKFNEKEKTKLENSKQQIKNAIQSVKDKNLSLFKRLFDFDIN"
     gene            complement(19129..19731)
                     /locus_tag="RJ267_000147"
     CDS             complement(19129..19731)
                     /locus_tag="RJ267_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDV7388038.1"
                     /translation="MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGELDITLCILSGTLGSVLGALINYYICFFWGKNFVLKWGKYFGINEVKFAKFEE
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLINFILFTALGSAIWVAILVFLGYY
                     IGQNEELIKTYLTQILIIIIVFVILASLIYIKIKKPFKKA"
     gene            complement(19812..20039)
                     /locus_tag="RJ267_000148"
     CDS             complement(19812..20039)
                     /locus_tag="RJ267_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388039.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAVLKECMIARAADNPNQVSVAGK"
     gene            complement(20050..21471)
                     /gene="omp50"
                     /locus_tag="RJ267_000149"
     CDS             complement(20050..21471)
                     /gene="omp50"
                     /locus_tag="RJ267_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane tyrosine kinase"
                     /protein_id="HDV7388040.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNTDDEITKLQKQLAQIQAELAEI
                     RKEREAQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVSGQD
                     YSANNKWMNELHLNMNADINDKTKFYGRLSMAKNWSQMGWSGSPLDLDAGRNTRSSGP
                     VLYVDRAYLDYYITPEWIATIGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPESLQDHKVAIRAAYGKTYQWDEESGKVRDWMSDQKDADANLYYAAVEGELPIEG
                     MGDNLIIFNVAHMTDFALPIPGSMLLGDDDEVVNLGNLTLANIHFENYKAFGTNFNWF
                     ASLGYSNGSNNEINPLLSIALQSKGYGNGKFNEKDGYAVHVGGRYDFTKALKVGYEFF
                     WGSRYWYTMSRPSINDPLNIRMTRGTAHDFYVIYQLDRYQFLRLSYTNIQNIWGNRGL
                     PFGGAKKDKARADNIMLMYNVKF"
     gene            complement(21635..22117)
                     /locus_tag="RJ267_000150"
     CDS             complement(21635..22117)
                     /locus_tag="RJ267_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDV7388041.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGIGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDKI
                     "
     gene            complement(22127..22834)
                     /locus_tag="RJ267_000151"
     CDS             complement(22127..22834)
                     /locus_tag="RJ267_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDV7388042.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFTRKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISGDYTAFGELSSAIEAKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEDDDDVQAVYTNID"
     gene            22943..23284
                     /locus_tag="RJ267_000152"
     CDS             22943..23284
                     /locus_tag="RJ267_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDV7388043.1"
                     /translation="MNIAKKELFVAWFFLIAAIVFEVLGTSFLKMENQILGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIILSIIG
                     IIMINIGEVKE"
     gene            23284..23592
                     /locus_tag="RJ267_000153"
     CDS             23284..23592
                     /locus_tag="RJ267_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7388044.1"
                     /translation="MYIFIIILSALLDIVANLLLKKSDGFKHKIWGLAAIANAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(23610..25202)
                     /locus_tag="RJ267_000154"
     CDS             complement(23610..25202)
                     /locus_tag="RJ267_000154"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HDV7388045.1"
                     /translation="MKSIIFNEIKKILECDFALENPKDKNLAHFATPLAFSLAKELKK
                     SPMLIASDLASKFQNHDCFESVEAVNGYLNFRISKTFLNELANQALTNPNDFTKGEKK
                     QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFDTEYYVNDAGNQIYLL
                     GLSILLSVKENTLHENVEYPEQYYKGEYIADLAKEAFEKFGKEFFSEENIPSLADWAK
                     DKMLVLIKQNLEQAKIKIDNYVSERSYYDALNTTLESLKEHKGIYEQEGKIWLASSQK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNL
                     LFEALNLKAILNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSL
                     VALSIKTAFSLMGIEAKNKMEH"
     gene            complement(25214..25453)
                     /locus_tag="RJ267_000155"
     CDS             complement(25214..25453)
                     /locus_tag="RJ267_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HDV7388046.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     NNDDEVAKNTQKIEENKNTTNNTNADASIDETKKA"
     gene            complement(25455..26078)
                     /gene="gmk"
                     /locus_tag="RJ267_000156"
     CDS             complement(25455..26078)
                     /gene="gmk"
                     /locus_tag="RJ267_000156"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDV7388047.1"
                     /translation="MKLQGFVLLISGPSGAGKSTLLKKLFDEFEDELYFSISSTTRKP
                     REGEKNGIHYHFISHEEFQKGIDSDHFLEWARVHENFYGTSLKHTQNALDNGKIVVFD
                     IDVQGFKIARKKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKE
                     LSEYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE"
     gene            complement(26075..>26706)
                     /locus_tag="RJ267_000157"
     CDS             complement(26075..>26706)
                     /locus_tag="RJ267_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HDV7388048.1"
                     /translation="NKELQANISDFDDLPVVEEQEKEMDFDDLPEDAEFLGQAKYNEE
                     SEENLEEFAPVVEEDVQDEIDDFASNLSTQDQIKEELAQLDELDYGIDSENSSKVLED
                     FKDEPILDDKELGTNEEEVVVPNLNISDFDALKESDIQEALGEEILEKNEEPIASDAT
                     KDDNSEEIVNELSQSIAGAITSSIKDDTLKAALKGMNMNININISFKED"
BASE COUNT         9340 a         4857 c         3531 g         8978 t
ORIGIN      
        1 gattttatag ataaaagctc cattaaacca atacctttat aacctctagg tgtataccaa
       61 aaactactaa tttcttgctt catcaaccct tctttgtaaa tcaaattctt ctttctctaa
      121 aacctcaaac aacttcttat gaaaatcatt atttttaaag tttaaacaaa gcttttttac
      181 aagttcattg cttttctttt tatcttgata attctgccat aaaatttctt tatttttgtt
      241 ttcatatctt ccatttggat taaattcata atgataaatg caagttttaa aaacagctat
      301 tttctcacaa aacataaaat aaacataaca aaaaagcaca tcttcgccat aactcaaacg
      361 ctcatctatt ttaatttttt caaaactttt taagataata tcttttctaa aacacttagc
      421 ccaaaccgac cagcaaaaat gcctttgttt gcttagaaat tctaaaaatt ctttttgatt
      481 aaaaaactca tcttgtttaa aacgataaaa ttgcttggtt tttaccctat gtacaaaagc
      541 atcaaagcaa agcaaatcaa aacctttttt catctcttta agcgctattt tacaagcatc
      601 aagagttaaa aaatcatcac tatctaaaaa cattataaaa tcagaactag aatgcaaaac
      661 tcccaaattt ctacttgcaa aagtgcccaa attttcttca ttttgaaaga tttttatcct
      721 tggatctttt ttagcaaatt ctaaaaccat atttaaacta ttatctttac ttttatcatc
      781 gataatcaaa atttcaatat cttttaaagt ctgatttata caactttgca aagctcttga
      841 gataaaattg caagaattaa aaagcgggat tatgatagaa agttgtggca tatttttcct
      901 aaattttgtt aaaataataa aaacaattct atcaaagttt aggaaattta tgaaaatttt
      961 tatacatctt cccacctggt taggcgatac ggtaatggct tcacctgctt tatacactat
     1021 aaaagaacat tttaaagatg ctcagtttat cctttatggt tcttttgttt ctacagcact
     1081 ttttaaagaa tttcctaatt ctaaaatcat catagaaaat aaactatccc gttataaaca
     1141 agctctatct ttacgcaaag aacttggtaa aatcgatctt agctttgctt ttagatctgc
     1201 gttctcttct aagattatct tgcatatcct taaaacaaaa caaagatatt tttttgacaa
     1261 aaacaagtac aaagaagaac atcaagtttt aaaatacctt tattttatag aaaattcact
     1321 tagtataaaa gctcatttta aggacttaaa gcttcccttt aagctaaaat ttcaaaaccc
     1381 tcttatctta agaaatggta aaaaaattct aggactcaac cctggtgcaa gctttggaag
     1441 tgcaaaaaga tgggatgcga gttattttgc taaagtggct ttaaatttca gccaaagtca
     1501 tgatatttta atctttggtg caggaaaagc cgaacaagaa ctttgtaatg aaatttatca
     1561 aattttaaaa gaacaaaaca taaaagtaaa aaatctttgc aataaaacca ccatcaaaac
     1621 cctttgtcaa aatatcgctt tttgcgatct tttcatcaca aatgacagtg gacctatgca
     1681 cctaagtgcg gtttataagg taaaaaccgt agctattttt ggccctacga aatttactca
     1741 aacttcacct tggcaaaatg aaaatgcaaa attagtgcat ttagatctag cttgtatgcc
     1801 ttgtatgcaa aaaacctgcc ctttaaaaca ccacaaatgc atgaaagatc taaagcctga
     1861 aaaagtgata gaacaggcta aaaatttact taaaaactct catctatgat ctgacaaagt
     1921 gtgtgtatga ttaaaatgtg catttcttga attctagctg tatcatcgct tggcacaaca
     1981 agattatgat cacaaagctt attcatcatt ccaccacctt ttccgctaag ccctagacaa
     2041 agcatattaa gctcttttgc tttttttaaa gcttctaaaa cattagggct ttttccgctc
     2101 gttgaaatac cgattaaaac atccttttca ttccctaaag cttccacttg tcttgaaaaa
     2161 acaaactcaa aaccatagtc atttcctatg gcactaagtg ctgaagtatc ggttgtaagt
     2221 gctatgcctg ctaaagcctt gcgttctttt ttataacgcc cgctaagttc agccgcaaaa
     2281 tgctgagcat cagccgcact tccaccgttt ccgcaaatta aaattttacc acctttttta
     2341 agacactcac acaaaagctc acctacttta gcgatttgtc cttttaaaat ttcgcttgct
     2401 tgaacaattt tttgatgttc ttgccattct ttttccacta aatttatcat tttttatcct
     2461 taatcttttc tatgatctta cttgtactaa atccttcttc aaagtcgatt aattcaaccc
     2521 ttgaaacgat atctgcacct acaacaagtt tatctttata atcagctcct ttaaccaaaa
     2581 tatcaggctt taaaaagctt ataagttcta aaggcgtgtc ttcatcaaaa atcactacaa
     2641 aatcaacaaa ataaaaagct gccaacatac aagctctttg aaattctgaa tttacaggac
     2701 gactctcgcc tttgagtctt ttcacactcg catctgagtt caaacctaca atcaaaacat
     2761 cgcccaatct tttagctttg tcaaggtatt ttatatgtcc aaaatgcacg atatcaaaac
     2821 aaccatttgt aaaaacaatc tttttattat tttgtttcaa aagtaccaaa agttcttctt
     2881 tgcttttgat ttttttctca aaatccacgc gcttaaaact tttaatctca tcaaaactca
     2941 cactcacgct acctatttta cttaccacaa cagctgcggc ttcattggca agttcgcaag
     3001 ctttaaaaat ttcaatttca tttgccaaac aaaaagccaa aactgcgatc acactatcgc
     3061 ccgctcctgt tacatcataa acctctaagg ctttagcagg tgcgattttc aaaccctcat
     3121 caaaaagtgc aattccagct tctgaaagag tgatgataga ataacgcaaa gaaaaatctt
     3181 cttttaattt tttgatgcct ttttctaaat tttcaccctc taaattttca aatttcaaag
     3241 cctctaaagc ttctttttta ttaggtgtaa gtaaagttgc accgctgtat ttgttaaaat
     3301 cactcccctt aggatcaacc aaaacaggga tatttaaaac cttagccttt tctatcacag
     3361 ccttacaaac tttaggggtt aaaacacctt tggcataatc gcttaaaacc acagccttaa
     3421 agtctttaat cttttcatca aacaaagcaa taagctcatt ttcaagcaaa atctcactta
     3481 tatcttcttc atccagtctt aaaacctgct gattatgcgc cataatacga tttttaaaag
     3541 gagttttgcg tcctttttgg atcaaaaatt ctccttttaa attttcttgt aaaaattttc
     3601 cactctcatc atcgcccaca acaccgagcg caaaaacatc agctcccaag ctttttaaat
     3661 ttgcataaac attcgcagcc ccgcctaatc ttttatcttc tttaagagtt ttagctatta
     3721 aaacaggggc ttcagggctg atacgcgaac aatcacacca agtgtaatta tccaccataa
     3781 aatctcctat aatcaaaatt ttaggttttt gctgacttaa aaactcaagc atttacttcc
     3841 ttttcaaaaa gtctttttat ctcgcctaaa taatctttta taccctcttc aaggctaaat
     3901 tttggctgat aattccaagt ttgatctagt tttgcttcag tatggaactg ataagatttt
     3961 acataaggat ttgggatata ttcacaaggc aaatcagtct ttaactcttt ttgcaaaata
     4021 tcaactatat cttgaaaggt tcttgcttta ccactgccta cattataaac cccacatttt
     4081 gaatcaaggg cgattaaatt agcactaata acatctttaa tataagtaaa atccctataa
     4141 atttgatcac ttccttcaaa caatcgtgga ttttttcctg ctaaaatttg atggccaaat
     4201 tgcaaaacca tagaagcggt tttgttttta taaaattcgc cttttccata aacattaaaa
     4261 tatctaagtc ctaccaaatg agctttatcg taatattttt tcgctaactt atccatcatc
     4321 aattttgaaa aagcataagg attttttggt tcttcatcct tacctacagt ttgtggactt
     4381 tttgcatcac cataaaccga agctgaactt gcataaataa gctttgcatt aagatctatg
     4441 ctaagttcta taaaatcttt aaaagtattt aaattggttt gcaaaacctt agtttgatca
     4501 aaaaccgtag tgtctgaaat tgctgcttga tgaaaaataa tctctggttt aaaatcttca
     4561 atctttttta aaactttttc atcgttaata tcgcctgcaa aaagttctcc atcaaattca
     4621 agtaaatttt taaaatgccc aaaactttgc aaatttccat tttcaaaagt cgcactacta
     4681 cgcattttat cgatgattaa aatttcatgt ttttcttgca aatttaaagc tagttgcgaa
     4741 cctataaatc ctgctccacc tgtgattgct attttcattt aaatatcctt ttccttaaaa
     4801 aagttcaaaa tttcttttaa atttttaaat tgtctaaaaa aatcaccttc ttttttttct
     4861 tcattcacta aaatcaaagt gccaatatca gcatttaatc ctgcttgcat atcacttaga
     4921 ttatctccga taaagataga atttttcata tctaaatcaa actcatcttt tgcttttaaa
     4981 agcatgcctg ctttaggttt gcgacactca caaccttcta aatgcggaca atgataaatt
     5041 ttatcaattt ttatatcttg tttagcaaat tctttaagca tataatcaca aagcttaaaa
     5101 aaatcacttt ccttgtaata tcctcttgca atgcctgatt ggtttgtcgc tataaaaagc
     5161 aaataatttc tagccaaaaa atatctacaa agttcaaaaa ttccatcaca aaattcgaaa
     5221 tcttctattt tataaacata ttttttatct atattaatca caccgtctct atctaaaaat
     5281 aatgcttttg ttttcataaa aacattataa tatagctttt ttaaaaagaa aataaacatt
     5341 atctttaatt tcttaagatt tttattaaaa ataaagatat ataataccta gcaatctaat
     5401 ttttactaag gagaaaacaa atgaaaaaat tattagtagt ttctgctttg gcatgtcttg
     5461 gtgtttctgc ttttgctgca gatggtgcta cactttttaa aaaatgcgca gtatgccatg
     5521 gtgcaaatgc tgacaaagtt tacttaaaca aagttccagc tttaaaaact ctttcttctg
     5581 ctgaaagact tcaatacatg aaagaatatt cagaaggtaa aagaaatgct tatggtcaag
     5641 gtgcgatcat gaaacttaac cttaaaggtt taactgaaga agattttaaa gctatcgaag
     5701 ctcatattga aactttaaaa taatttctaa aaaaggcttt tctttttaag aaagcctttt
     5761 tttatccaaa gcttcttttt tacgtctttc taattctata gcatcacgta aagaatcctc
     5821 atcatcattt aaagtagtaa atttataatc atcatcaaat tgcttatttt taatccccca
     5881 aagcaaagtt gccaaaatga taaaaaacgc taagatagaa actcctatca tcatcatgat
     5941 tatactattc attctttaat ccttaaagca tttaaaacga ctattatact actaaaagac
     6001 atagaaatag cagcaaataa aggatttatc atacccaaaa aagccaaagg tatggtgcaa
     6061 gcattataaa acaaagaaaa agcaagattt tgcttgataa ttttaaaggt gtttttagat
     6121 aatttgatgg ctttttttaa agaaagcaag tcatttttca aaagcaaaac atcactactt
     6181 tctatagcta gatcacttcc ttctcttaaa gtcattgaaa cacttgcgta ttttaaagct
     6241 agtgcatcat ttaccccatc acctacaaat aaaactttgt aatttttact taaattttct
     6301 atagttttca tcttatcttc aggcaaacaa gaagcttgat aattttgaat ttctaacttt
     6361 ttagcgattt tttccactgc tttttgatga tcgccactga gtatcattaa ttctttcttt
     6421 tcttttttaa gataagcgat aagctctttt gcaccttctc ttaaaacact atcaaactca
     6481 aaaaaagcta aaattttacc ttccttggca aaaataaaat gcgtattatc aaattcttta
     6541 gccacaatac ccttttcttg caaaaattta gaacttccgc ctaaaagcaa cccttcattt
     6601 aactcagcac ttaaaccttt agcttgaata ctcgaatgct ttttaaaatc caaatttaaa
     6661 tccttagctc ctttttgctt taaatataac acaatatttt gagagatagg atgtttagaa
     6721 agttttacaa aattataaag ctcgtttaaa tcaagcgctt tatctaaaaa aacctcttta
     6781 agttcaagct ctattttggt taaaataccc gttttatcaa acaccacaca atcacatttg
     6841 cttaaatctt ctatcacgct agaactttta aataaaatat gcttttttaa agccctacct
     6901 aaagccacaa gattgctcac tggcgttgct aaagccaaag cacaaggaca agcgataatc
     6961 aaaactgcaa tcgcattgac taaagaaatt tcgaaactct cttctttata aaaaaaccaa
     7021 aaagcaaaac aaataaaagc gatcaataaa accgttctag aaaaataagc caaaagacta
     7081 ttgaccaaac tttcaagttt tgctttttta gaacttgcaa gttctaaaag ctggataatt
     7141 tgactgagtt ttgaatcctt gtaaagcttt gttgcttcat actccacact tccatcaagc
     7201 actatacaag ctgaaaaaat ttcatcttct ttttgtatga gttttggggt attttctcca
     7261 tttaaagaag aagtatctac gctcatttca ccacttttac aaatcccatc gattaaaatt
     7321 ttatctccag ttttaagcaa aattctatcc cccaaacaaa ccttttgcac ttctttagag
     7381 acaaattctt taccattgaa aactaaaact tcattttgca aaaaatcatt aagcccatct
     7441 atagtatcta aagcacgctt tttgctaaac atctcaagat atttacctat aaaaacaaag
     7501 caaattatca tcgccacaga gtcaaaatac acctccccta ccctaaaaaa catggcccat
     7561 aaagaataaa cataagccaa actcgctccg ctaatcacca atacatccat atttaaacta
     7621 tgcattttta aagttttaaa agcactttta taaaaatgag atcccgtata aaaaagcaca
     7681 ggagaacaaa ggataaattc agcaaaattt aaaatatcct tagtgtcctt atccataccg
     7741 ctaaaaaatc ctgcgtattt tgccactgct atccacatga tattcatcac acaagctata
     7801 gccacaacaa gcttagaata aaattccctt tttagtaaat ccgctttttt tgaagccttg
     7861 ctcgcatcat aagcactcgc tttatagcct atgctttcaa taagtcttaa aatttgcacc
     7921 aaagaaatgc tttgctcatc aaaaacaatg cgtgctttat ggtttaaatg attaatatca
     7981 agttctaaaa ttccttcttg tttggttaaa attttctcat taagccacac acaagctgca
     8041 cattctatac cgtgtatcat gagataaatt tcactaaatc cttctttggt tttagtgata
     8101 aactcatcat aatttttcat ttcattttga aaatttacag ggcttaaagt ttgatttcca
     8161 agcttttcat aaaactcatc taatccactt tcatgcaaaa tttcccaaac gctctcacaa
     8221 cctttacaac aaaaaatttt acccttatac tctatcattt gggcttgttt ataatcaagt
     8281 ttgcaatgtt cacatttcat aatcattctt taaaaaaata ttttttataa ttataaacaa
     8341 atttgacaaa aagtgcattt ttttattaaa atcacatttt acaaaaatta ttctgctaaa
     8401 tcttacgagg acttatggaa aaagaaaaaa aacaacatca aagaacccac gttccagtgg
     8461 aaggttataa aatcgaagaa ttaaaattat tagatttaga aaatctagtt aaaatcgcta
     8521 atgaatgtga aatcgaaaac ccaagagaat ttcgccgcca agaacttatt tttgaaattt
     8581 taaaagcaca aacaaaaaaa ggcggtttta tactttttac agggatttta gaaatttctt
     8641 ccgaaggtta tggcttttta agaggtatgg actctaatct tagtgatagc gttaatgacg
     8701 cttatgtttc aaactcacaa attaaaaaat ttgctctgcg tgtaggcgat atcgttacag
     8761 gacaagttag agaaccaaaa gatcaagaaa aatactacgc tcttttaaaa atcgaagcga
     8821 tcaattatct gcctttacaa gaagccaaag aaagaccttt gtttgataac ttaaccccta
     8881 tttttccaac agaaaaaatc aaactcgaat acgatgcgat gaagcttaca ggtcgtgttt
     8941 tggatctttt tactcctata ggaaaaggac aacgcgggct tatcgttgct ccaccacgca
     9001 caggtaaaac agagcttatg aaagaacttg ctactgctat tgcaaaaaac cacccagaaa
     9061 tgcatttaat cgtactttta gtcgatgaaa ggcctgaaga agttaccgat atgcaaagat
     9121 gtgtaaaagg cgaagttttt agttctactt ttgatttacc tgcttataat catgtgcgtg
     9181 tagctgaact cgtgatagaa aaagccaaaa gaatggtaga aacaggcaaa gatgttatca
     9241 tcttgcttga tagtatcaca agactggcac gtgcttataa caccgcaact ccaagcagcg
     9301 gaaaagtcct aagcggcggg gtggatgcta atgccctaca caaaccaaaa cgcttctttg
     9361 gtgcagctag aaatatagaa aatggaggct ctttaactat agttgctaca gctttaattg
     9421 atacaggttc aagaatggat gatgtgattt ttgaagaatt taaaggcaca ggaaatagcg
     9481 aaatagttct tgatagaaat atcgccgata gaagaattta tcctgcgatt aatatcatca
     9541 aatcaggaac aagaaaagaa gaattactcc aaggcgtagc aaatcttcaa aaaatttggg
     9601 cgatccgttc agcgatttct caaatggatg atgttgaagc gttgaaattt ttatattcta
     9661 aaatgcttaa aaccaaagac aatgtagaac ttttatctat aatgaacgag taaaaaatgc
     9721 ttcaagcttt agcgattaaa tacagaccaa aaacttttga tgaacttata ggacaaaaga
     9781 cagttagcgt aagtttaaaa tacgccctaa atcataatcg cttagctcat gcttatcttt
     9841 tttcaggact tagaggaagt ggaaaaactt caagtgctag aattttttct cgtgctttag
     9901 tttgcgaaca aggaccaagt gatactccat gtggcacttg caaacactgt cttgcagcac
     9961 ttgaaggcaa acatatagac attatagaaa tggatgctgc aagcaaccgt gggcttgaag
    10021 atatacaagc cttaatcgaa caaaccaaat acaccccttc tatggcaaga tttaaaattt
    10081 tcatcattga tgaagtacat atgcttaccc cacaggctgc aaatgcgctt ttaaaaacct
    10141 tagaagaacc cccaagttat gttaaattta tacttgcaac cacagatcct ttaaaacttc
    10201 cagctactgt gctttcaaga acacaacatt ttcgctttaa acaaattcca cagagtgaaa
    10261 ttttaaatca tcttaaagaa attttactta aagaaaatgt taaatttgaa gaagaagctt
    10321 taaaatttat agcaagaagc ggcaatggat ctttaagaga tactttaacc ttgcttgacc
    10381 aagctattat tttttgtcaa aatgaaatca gcattagtaa aattacagat atgttaggct
    10441 ttttagatcc tcaaaaaatc aaaacctttt atcaggctat cttaacaaaa gacaaggaaa
    10501 aagtttttgc gtatttagag gaattacaag actatgaagc ctcaagcgtg attgatgaaa
    10561 tgctttttta tttaaaagaa agtttttttg caaaaagtac agaattttct actttaattt
    10621 atgaaagatt tttccgtatt ttatcaaaag ctaagaatat gctttgcgat gatgatggct
    10681 ttacgctttg tgttatggct tttatgatga tggaagcaag tcatttaaaa gaaattgacg
    10741 cacaaatcca agaaatcaaa caagaaaata tgacaaatat tacacctagg atcacacctg
    10801 ctcctatcat acctaatctt gagaaaaaaa tagaaaaaaa tgcttatgaa atcttgcttg
    10861 atagtattta tgatagggat tttaatcttg cagaatgctt taaacaaagc acaaaattta
    10921 ttagttttga aaacaatact ttaaatataa gctcaaacgc acaaggacaa aatcgcgata
    10981 cactcaataa aggttttaaa ctcatacaag aactttttaa agctaaattt ggggaaaatg
    11041 caaaaattaa tgtgcaaaaa gcactaacaa ttgatgaaaa taagcttcaa tccttaactc
    11101 aagaattacc aaacaatgaa aataaaaaca tagatattca aagttctatt aatatgctta
    11161 aagaaggggc caaaaaattt gacccacaag aagatcttaa agaggctctt aaagattgct
    11221 ttggcaatcc tcaaatccaa aatatagatt aagatattgc ttaataataa taatataagt
    11281 aatctttagc tacaatattt ttttataaat tatttagaaa gaagaataaa aatgcaaaga
    11341 agagactttc ttaatggcat ggccttagct gtcgttgcag gcatgacacc cttacaatta
    11401 ctctatggaa aagatagtaa aattgaagac tttacaaaag aatactatcc tcccaatcta
    11461 cttggattaa gaggtagtaa taataaaagc tataaatacg ctcacatgtt aagagatgga
    11521 gataaatttg gttttagcag tataaaacct aaagaaaatt atgatttagt aatcgttgga
    11581 gctggaatca gtggactagc tgcagcttgt ttttatcaac aaaaatttgg ggaaaataaa
    11641 aaaattttaa ttcttgacaa tcatgatgat tttggaggac atgctagacg caatgaaata
    11701 caacttgatg aaggaaccat tttaagttac ggaggaagtg aaagttttca atccccaaaa
    11761 gcactttatt ctaaagaagt aatcgaactc ttaaaatcac ttggagtcag tatagatgaa
    11821 ttagcaaaac gatttgatgt aaatttttac ccagatttaa aattaagcag aggggtatat
    11881 ttttcaaaag aaaattttgg tgttgataaa gttgtcaatg gaaatcctag aaaagttatt
    11941 tgtgatgata tcccagattc taaaaataat ggaaaaagta ttgaaaattt tattaaagat
    12001 tttcctatga cttctaaaga taaaagagag ttaatatccc tttttaaaag caataaagac
    12061 tatctcaaag gtttaagcaa agaggaaaaa gaagaatata tggctaaaac aagttataaa
    12121 aaattcttag aagaaaaagt aaaattatcc caaaaagcta taacattttt cgagggaatg
    12181 acggatgatt ttttagcttt aggtatagat gcaatctctt gtgaggatgc aagaatttct
    12241 tttttacctg ggtttgataa attaggactt gatcctatcg aaggagaagc tttggccgaa
    12301 atggaagaac cttacattta tcattgcgcc gatggaaatg ctacagtagc aagattaatg
    12361 gtaagaaagc tgattcctac agtgtcacaa aaaggtaaag atatggacga tatcacctta
    12421 gctcattttg actactcaaa acttgatgac tctaataata aagttcgttt acgattaaat
    12481 agtactgtta ttcatgtaga aaatacaaaa aatggaacct taataagcta tatcaatcaa
    12541 ggaaaaaaat atagaattaa agcaaaaaat gttgtaatgg ctaattataa caatatgatt
    12601 ccttatatta tccctagttt acctaaagaa caaaaagaag ccttaagtaa aaatgtaaaa
    12661 acatctctac ttcacaccaa agtaattata agcaattggg aaccatttat taaactaggg
    12721 gttcatgaaa tttattcacc aaaaatgcct tacgctagaa caaaacttga ttatccggtt
    12781 gatatgggtg gctatcatca tccaagagat ccaaaaaaac ctatatgtat tcatatggtt
    12841 tgctctcctt tagctctagc caatattcaa ggtattgatc ttgaagggct tgatgcaaga
    12901 gatagagcca gagtaggtag aaatctattg tttaccatga gttttgaaga acatgaaaaa
    12961 atcattaggg ggcagcttca aggaatgttg ggaactgcag gttttaacca cgaaaaagat
    13021 atattagcaa ttgttgtaaa tcgctgggga cattgttact cctatacaga aaatagtctt
    13081 tatgatgatc ctaaaattgc agagcaaacc aggcttatag ctagaaaacc ttttggcaat
    13141 attgttatag ctaattcaga ttcagattgg tcagcttata tgcattcagc tatcgaccaa
    13201 gcttatcgcg ctattaatga gatcaaggct tagattttct aagccttaaa gaattaaaca
    13261 ctacagtaac agaactaaaa cacattgcaa gtgctgctat atgaggactt aaagcgataa
    13321 aaggtacaaa tcctgctgcg atgggaatgc aaagtacatt ataaataaaa gcccaaaaaa
    13381 gatttagctt aataatactg cgtgtttttt tagcaagctt aaagcattta aaaatagctg
    13441 ataaatcatc ttttatcaag ataaaatccc ctgttttttt tgcaagttca tttgcctttg
    13501 aaaaacttat actcacactt gcagcagata aagctgccgc atcattgatc ccatctccta
    13561 caaaaagagt tttttcaaat ttttgaatga tttgtagttt ttcttcactc ttaagctgag
    13621 cgtgaaattc gtctatttgt aattctttgg ctattttttc tacatttttt acatgatcgc
    13681 cgcttaaaat aaaagtttta agattttgct tttttaaatt taacacaagc tctttggctc
    13741 catcttttaa agcattgctt aacaaaacac cgcctaaaca ctttttattc ttagcaaaat
    13801 acaccctaat atattcttta aaagtatcaa aaaagatatc actttctttt gtgtcaattt
    13861 cattttcgtg caaaaacttc gcactacctg cgagataaat atcattatct tctttgtatt
    13921 ttataccaga acccacaatc actcttccct caccctttaa atcaaaaaaa tgatctttat
    13981 gtaaagcctt agctatagga tgagagctta aactttcaat ttgacataat ttatcaaaat
    14041 catctttaga aagattgtgt ttaaaaatac tcaaattttc ctttgttaat gtacccgttt
    14101 tatcaaaaaa agcatactta actaaggcta atttttctaa agcagcagga tttttaataa
    14161 gaatgaaatt ttttgccgca tttgcacttg ccacaaccaa agctataggc gttgcaagac
    14221 ctaaagcaca aggacaagag atcaaaagca cagcacaaga gtgtaaaaaa gctgtattta
    14281 aatctgcttt tagcacccaa aaaacaaaaa ctaaaaaagc aaaaaatatt atacccccta
    14341 caaagtattt agaaatttga tctgctaaat ttgccaaagg acttttgata cttcctgctt
    14401 caaaaactag atttttgatt tgttctaaag tactatccat ggcctttttg tttgctttga
    14461 tccttaaagc accatttaaa actactgctc ctgcttgaac ttcatcgcct tcttttttta
    14521 aaacaggcaa aaactcccca tttaaaaaac tcatatcaag ctctgcactc cctaaaagca
    14581 ctactccatc tgcaacaatg ctttctcctt cttttaccaa aagtacatcg ccacttttaa
    14641 caaaagaact tgaaatttct ttgatacttt catcttcaag caaaattttt gtcttttttg
    14701 tgtctatatt ttctaaaatt ctttgataat cttgtgcctt aaatttagcc ttactttcaa
    14761 gatattttcc taaaagcaca aaggaaataa tcatcattgc accactaaaa tacaaatctt
    14821 cttctttaaa aatttgcaaa tacaccaaaa aagaatacac aaaagcactc aaagtcccca
    14881 aagctacaag ggtattcata tctaaatttt tgcttttaaa gcctaaaaaa gcatgagaaa
    14941 aaaagtctct cccacaataa aatatcccaa aaaaactcaa agccatttgg atattttgag
    15001 aaaaagaact tttaacaaac atttcaaaat acataataat cacactcaaa actatactta
    15061 agagcaaatt ttttcttaat tctaagtgtt tttttgcctt gtatgcgttc aagctttgtt
    15121 catcttctaa aatttcaaag cctaaatttt taatttttgc gatgatatcc ttgcgttttt
    15181 tttgatcttc aagtaaaaaa accccgctag aattcacata agaaacacta gcatctttaa
    15241 caccatcaat ttttttacaa gctctttcta tagcattaga acaattaacg caagtcattt
    15301 tgcctatttt tatacgcaat tcttccatta taaacgctct acaatctcaa aacctaaatc
    15361 ttgaaattct tttgtaaaat ttgatacttg attttcttct aaatttaaac ttaaaatttt
    15421 ttgctccaaa tccacttcta tatttccaaa ttcatcttca agagaatttt tgatcaaatt
    15481 tacacaattc atgcaattaa cattttttac tttaaatttc attttcactc cttataggtt
    15541 gtatggtaat atgcccgatt tcaaattcat gcaacaactt atgagataaa tcctgagata
    15601 gtttttcaaa ttcctttaga ttgcaaactc ttacttttaa atgcatagag gctactagca
    15661 ttttattagt gatttgagta atatgcaaat ccactacctc atccacacta ggatttaaaa
    15721 gcaaaacttg tcttactttt tctatatcca caggagaact ttcaagcaag acattagcac
    15781 tttgtttaag caagataatc gcccatctta aaagcaagat tgataataca atagctaaaa
    15841 tcgtatctat ataaacaata tcactaaaat acaccacaat cccacctata ataaccgcta
    15901 aagaacccaa taaatcgctc atcatatgca aaaaagcgga cttcatattg acattttcta
    15961 aatttgcacc cttaaacatc atcaaagcat taatcccatt taccaaaaag cccaaaatag
    16021 ctacaattat catggtttta gcgtcaattt cttttggatt gataaatttt tctatagcct
    16081 cataaatgat aaataaagcc gataaaataa tggttaaagc attgataaaa gccactaaaa
    16141 cttcaagacg aaaataccca aaggtctttt gatgatcttg ccatttttct acagctataa
    16201 tggctaaaaa actaagagct aaggcaaaaa catcagaaaa catatgcaaa gtatcgctta
    16261 aaagtgccaa agaatttgaa aggattgaat aaataaattg cacaagcatc atagaaaaag
    16321 tcattaaaag agaaattttt aaaatctttt tatccacact ccttgcatcg gcatgggaat
    16381 gatgatgttc atgagaatgt tcttcgtgat tatgatgaca agatttgtta gctaaaggct
    16441 cgtgtgataa aaatttatac atcttatatc cttttttgct tgacatttta agatattaag
    16501 ctaaaaagga tataaatatt tgttattttt ataaaaatta aaagtcaaaa agctcgccta
    16561 gccaactttc tttctttttc tttttataat agtcattgtg ctgatgataa gctgagtcat
    16621 tatatcttga ctcttgtctt ggagcttggt taaaatttgc tgtattaggg acactgcgtt
    16681 ctatgatttt gtcaagctct ccacgatcaa gccaaacgcc acgacacttt ggacaataat
    16741 caatctcaac tccactccta tcactcataa ccaaatctac attacaaact ggacataaca
    16801 tacaatacct ttttttaaat ttttgactta aaattataaa aagaaatatt aaacaaattt
    16861 acaacaagtt ttaatgtttt tttgcatgtc tagtcatcat aaaactttgt tcaaaaaata
    16921 taagcaaggt aacactcact cctatagcta gagccaaagt cacagaaaca gttgtaaaaa
    16981 aataatcaaa aaattgaact aaaaattcag acttagcctt caaatcatca ctgcgtataa
    17041 aagaaataag atacaaaatc gctttataag cataaattcc aggtatcata ggaataagag
    17101 cagggaaagc gataatttca gcaggagttt tgatgatttt tgctaaaaca attcctaaac
    17161 atcctatgca aaatgaagca acaaaagttg caattgctaa agtttgaaaa tgaaaatatt
    17221 ccaccaaggt aaaacgaagt ccatgtgcaa ttgccgctaa aagagcagat aaaataaggg
    17281 tttttaaagg tggattacaa gcataagcaa agccaaatcc cgccacagca gcaaaaaaca
    17341 tatctcttaa aataaattca atcatcttaa aatcccaaaa tccgaaatac taagcgtcat
    17401 gtaaattcca agtgctatac aacaaatcaa aatagccacg ctgataatac ggctaagccc
    17461 cattaaaata tgatctttta atatatcaat cacagaattt ataaaaaata cccctggtat
    17521 aagatacaag atactagaac ccaaagccac atcagaagta ttggtatatc ccatatccag
    17581 tccaaaaaat acaaaccatg atgagataaa agaacaaagg atgtattgaa ttcttaaatc
    17641 aatctttgct ttagttaaaa tatatcttaa taacaatccc acaaaagttg caaaaaatac
    17701 taaatttcca gcaccaaaat caccaccaaa aagcctgcaa aaagccgaat ttgccataga
    17761 aacaaataaa agattaagca aataagaatg ctttttttgt tgagaaattt gcccaaaaac
    17821 gacttttgct ttttcaagat cgtatttgtg atcatatata gcccagctta aagcacttaa
    17881 atcaaaaata agtttaaaat taacatgggc atgatgattg ggtataacat aagttctttg
    17941 aatggagtta tcatccatat ctacaacatt taaagtaata tgatgaaaaa agaaattgat
    18001 atttatctca tagccataaa cctcagctat tcttcctacg cattttgcca ccctagctgt
    18061 ataagttcca gcacctagca aagttttagt atatacgatt aaaaaattag ttaatctttg
    18121 tatatcaggt ttttccatat tttaataatc tttgattgaa tttgttataa ttatagcaaa
    18181 ttttaaaata aataaggaga aaaaatggca aaaatcggta tagttggttt aggttatgta
    18241 ggatctgcta gtgcttatag catagctact caaggaattt gctcagaact ttatttatat
    18301 gatataaaac aagatttagc tctagctcat gcaagagatt tggaagatat gtcagccatt
    18361 catttttctt atacaaaaat ttttcatgtg ccaaatttag aaaatttagc ttcttgcgat
    18421 attatcattt tagcttttag aaaagaaagc ttaaaagaat tacctagtcg cttagtagaa
    18481 cttcaaaaca atatcctcga acttaaagac attgtcttaa ccttaaaaaa tgctaatttt
    18541 aaaggcaaat acattgtcgc aacaaatcca aatgacacca taacttacta cactcaagta
    18601 ttaagccaat tacctaaaaa tcatgttttt ggtagtggaa caaatttaga tagttcaaga
    18661 cttaagaaat ttttagccaa agatttaaac ataaattcaa aagatatttt tgcttgtatg
    18721 attggtgaac atggagattc tcagtttgca gcactttcta atgcaagcgt tttaggacaa
    18781 aatttattag atttttacaa gcaaaaatta ggcaaagatt tagacataca agaactcgaa
    18841 aaagctgtga ttagcgaggg atatttcatc tatgaacgca aaggaagaac agaatttggc
    18901 ataggaactt cttgtgcaaa tttagccaaa gccatcctag aagatagaaa aagtttacat
    18961 cctgtaagtg tggtttttga tgatatagct ttttcaatgc ccgctatcat aggaaaagat
    19021 ggtatagaaa aggtttttga attaaaattc aatgaaaaag aaaaaacaaa attagaaaat
    19081 tcaaaacaac aaatcaaaaa cgctatacaa agcgtaaaag ataaaaattt aagccttttt
    19141 aaaaggcttt ttgattttga tataaattaa acttgctaaa atcacaaaaa caattataat
    19201 gattaaaatt tgagttaaat aagttttaat caactcttca ttttgtccta tataataacc
    19261 caaaaataca agtatagcca cccaaatagc actaccaagt gcagtaaaaa gtataaaatt
    19321 tataagtttc atttttacca aacctgcagg catagagatg tactgacgaa tccctggcaa
    19381 aagacgacaa gtaaaggttg aaaattcccc atgtttgtta aaaaattctt caaatttagc
    19441 aaatttgact tcgtttatac caaaatactt accccatttt aatacaaaat ttttacccca
    19501 aaaaaagcaa atataataat taatcaaagc ccctaaaaca gaacctaaag tcccactaag
    19561 tatacaaaga gtgatatcaa gctcgccttt atgtgccaaa tatccagcag gtatcataac
    19621 aacttcactt ggaaaaggta taaaacaact ctctaaggtc attaagataa taatacccaa
    19681 atacccccaa gcactagccg tctcaacaat aaaagaaatg atttcttgca tattagcctt
    19741 atttgaagaa aattttaaaa aattgtagct taaaagatta aacagtaaaa agcggtttta
    19801 caccgctttt tttatttacc tgcaactgaa acttgatttg gattgtctgc tgcacgagcg
    19861 atcatgcact cttttaaaac agcagcatca gctggatcgc taactttttt attaatccag
    19921 cgttcaactt gtttcattgt ttttgactct ggctctggag cttcgtattt tgccatcaaa
    19981 cttgcacaat cagccaaagc aatgataggt aataaacttg caaaaagtat ttttctcatc
    20041 ttttgctcct tagaatttta cattatacat taacatgata ttatcagctc ttgctttatc
    20101 ttttttcgct ccaccaaatg gtaagccacg attaccccaa atgttttgga tattggtgta
    20161 gcttaagcgt aagaattgat atctatcaag ttgataaatc acataaaaat catgtgccgt
    20221 tcctcttgtc attcttatat taagcggatc attgatactt ggacggctca tagtatacca
    20281 gtatctactt ccccagaaga actcataccc tacttttaaa gccttagtaa aatcatagcg
    20341 tccgcctaca tgcacagcat agccgtcttt ttcattgaac ttaccattgc cataaccttt
    20401 actttgaaga gctatgctta ataatggatt tatctcatta ttgcttccat tagaatatcc
    20461 caaagatgcg aaccaattaa aatttgttcc aaaagctttg taattttcaa aatgaatatt
    20521 agctaaagta agattaccta aattaacaac ttcatcatca tcacccaata acatagatcc
    20581 tggaataggc aatgcaaaat cagtcatatg agccacattg aagataataa gattatctcc
    20641 cataccttct ataggaagct ctccttctac tgcagcatag taaagatttg catcagcatc
    20701 tttttgatca ctcatccagt ctcttacttt accactttct tcatcccatt gataagtttt
    20761 accataagct gcacggatag ctaccttatg atcttgcaaa ctttcaggtt tataagtgat
    20821 cactgctgca tcacctaaag cattgattgc taaagctgga taagttgatt gtcttaaagc
    20881 attgtttcta aggttgcttc ctggaccatc ggttcctggc tgtcttccta tggttgcaat
    20941 ccactcaggt gtgatatagt agtcaagata agctctatct acataaagta caggcccgct
    21001 tgatcttgta tttcttcctg catctaagtc aagtggactt ccactccaac ccatttgaga
    21061 ccagttttta gccatagata aacgaccata gaatttggtt ttatcattaa tatcagcatt
    21121 catatttaaa tgaagctcat tcatccattt gttattagcg ctataatctt gtccgctaac
    21181 tttatagttt gtatttgaaa ctgctgttga aaactcaaga ccaaatttaa ccttacttaa
    21241 agcagcttga aattctgttt catcggctct atcattaaga tcggcaagtt cagcttttac
    21301 agcttcattt tgcttagctt gagcttccct ttcttttctg atttctgcaa gttcagcttg
    21361 aatttgtgca agctgttttt gaagcttggt tatctcatca tctgtatttt tagcaaaaag
    21421 tgaagatgaa agaagacaag cgcttaaaat aagtgaaaac ttagttttca taatcataac
    21481 tccttgtaat tttgttacat ttagtaaatt aaaattgtga ttatagaaaa aaaagtttaa
    21541 aaaaaaatta tacattaatc atttttagct agtcaaactt atgactagct ttgtaaatat
    21601 tgtagtttca aaaaagtttt aaaattttaa atttttaaat tttatcgcaa attttgatgt
    21661 ctaaaatttt atctccttgg cgtatagagt ctaaaacttc caaactttct tcatcttttg
    21721 gatcaatttg tccaaaaaca gtatgaaccc catctaaatg agcttgaggg ctgtgacaaa
    21781 taaaaaattg agagccaccc gtatcgcgtc ctgcgtgtgc catagataag gttccacgct
    21841 catgtttatg ttcttgatca tcacattcgc aaatgatttc atatccaggc ccacctatac
    21901 cattgccgtg tggacaacct ccttgtatga caaaatttgg gatcacacga tggaaattta
    21961 aatctttata aaacccttca ttagccaaag tagcaaaatt acaaaccgtt tgtggagcct
    22021 catcgccaaa aagttttagt ttcattgtgc ctttttcagt ttctataaga gcaaatttgt
    22081 attcgtttac tttgcttgtg tcaattgtct ttatcattat ttctccttaa tctatatttg
    22141 tataaacagc ttgaacatca tcatcgtctt ctaacttatc taaaagtttt tctatatcgc
    22201 taagctgttc ttcgctaaag cttacaggat tgtttggtat atactcaagc cctgcttttt
    22261 taagaactaa acccttagct tctatagcag aacttagctc accaaaggca gtataatcac
    22321 cgctaattac taactcttct tcattttgtt ctaattcttc aagtcctgca tcaatcaaat
    22381 caagttctaa ttcttctaaa tctcctgcaa atttttcaag atgaaaaacc gcttttctag
    22441 taaacataaa gcctaaagat ccattttgta aaacttctcc accatttttg ctaaaaatag
    22501 cttttacatt agccacggtg cgtgtagggt tatcgctcat acattcaact ataaccaaag
    22561 ctccatgtgc agcttttcct tcataatgaa tgtttttaat atctgcgcta tcttttccgc
    22621 tcgcacgctt aatagccgca tctatattat cttttggcat attatttgct tttgctgtag
    22681 ctatagcact tcttaatttt ggattcatat caggatcggt gccaccttct ttagcggcta
    22741 cttgtatggc tttagcaagc ttaggaaaaa gcttactcat tttatcccat ctagcctctt
    22801 tagaagctct tcggtattca aacgctcgtc ccataaattc tcactttctt taaagatttt
    22861 taaacttaaa agtataaact aaaaaggcta attaaagctt taaatggtat gattttacca
    22921 tttatttttg gggagaagct ttttgaatat cgcaaaaaaa gaactttttg ttgcttggtt
    22981 tttcttgatt gctgctattg tatttgaagt tttaggcact agttttttaa aaatggaaaa
    23041 tcaaatttta ggctatatat ttatggcttt atttatagct ttttcttatt tttttatggg
    23101 caaggcgatt aaaaaaattc aagtaggcat agcctatgct gtatgggagc ttttagggat
    23161 tattcttata cttttagttt cttttatagt ttttaaagag agtttaacct taactcaaat
    23221 tctaggcatt attctttcta tcattggaat tatcatgatt aatataggcg aggttaaaga
    23281 ataatgtata tttttatcat tattttatca gcattgttag atatcgtagc aaatttattg
    23341 ctaaaaaaat cagatggttt taagcataaa atttggggct tagctgcgat tgccaatgct
    23401 atacttgctt ttttcctact ttctttttct ttaaaatatg ttcctttaag catagcttac
    23461 tcaacttggg gtgctatagg catcatagga acttgtcttg gtggatggat tttatataaa
    23521 gaaaaattaa acaaaatagg aattttaggt atcattatcg taataatagc agtatttttg
    23581 ctaaattatt aaaacagcaa aatgctgttt taatgttcca ttttgttttt cgcttcaata
    23641 cccattaaag aaaatgcggt tttaatacta agagcaacca aagaaaataa tttaagcaaa
    23701 tcattttcat ttgcagagcc tacaacttta ttttcattgt agaatttatg aaaatttgca
    23761 gctaaatttt taagataatc aggaattttt tgcaaagctc tagcctcaaa agcatcgttt
    23821 aaaatagcct ttaaattcaa agcttcaaaa agcaaattta caccatcttg atttaaactt
    23881 tgtaagtcag ctttcattac atcatcgatt tttttaccag ctttagcaaa cacttgatga
    23941 attctagcgt gtgcatagtt gatataatat acaggattag agctatcttc tttttgcaaa
    24001 tcactaatat caaattccaa atgagtatcg cattttttac tcaaaaagat ataacgcaaa
    24061 gcatcacttc ctatttcatc aactacatcg ctcatcaaga taaaatttcc tgctcttttg
    24121 ctcattttat aaggctctcc atctttaagc agggaaacca tttgtgctaa aataatctca
    24181 agattattag agtcaaatcc caaaaactcc atcgcagctt tcattctagg gatataacca
    24241 tgatgatctg ctccccagat attaatacac tttccataac cacgactcat tttatcctta
    24301 tgataaacaa tatctgctgc caaataagtc ccgcgtccat cttcacggat aattacacga
    24361 tctttttcat cgcctttttg cgaagaagca agccaaattt taccttcttg ctcataaatt
    24421 cccttatgct cttttaaaga ttctaaagtt gtatttaaag catcataata cgatctttcg
    24481 cttacatagt tgtcaatttt aatctttgct tgttctaaat tttgtttaat caaaacaagc
    24541 attttatctt ttgcccaatc agccaaacta gggatatttt cttcgctaaa aaattcttta
    24601 ccaaattttt caaaagcttc ttttgctaaa tccgctatat actcgccttt gtaatattgc
    24661 tctggatatt caacattttc atgaagtgta ttttctttca cacttagtaa aatagaaagc
    24721 cctagtaaat aaatttgatt acccgcatca ttgacatagt attctgtatc gaatttatag
    24781 cccaaatgtc ttgcaagtct tgttaaggtg tctccaaaaa cagcgcctct tgcatgtcct
    24841 atgtgtaaag gcccagtagg atttgcactc acatattcaa gcaaaaaact ttcttgtttt
    24901 ttttctcctt tagtaaaatc atttggattt gttaaagcct gatttgcaag ttcatttaaa
    24961 aaagttttgg aaattctaaa atttaaatac ccatttacag cttcaactga ttcaaaacaa
    25021 tcatgatttt gaaatttgct cgctaagtcg ctagcgatca acatagggga tttttttaat
    25081 tccttagcca gtgaaaaagc caaaggggta gcaaaatgcg ctaaattttt atcctttgga
    25141 ttttcaagcg caaaatcaca ctctaaaatc tttttaattt cattaaaaat aatacttttc
    25201 aaaagactaa accttaagct ttttttgttt cgtctatact tgcatcagca tttgtattat
    25261 tagttgtgtt tttgttttct tctatttttt gagtattttt tgctacttca tcatcattat
    25321 tcatttcatc tttaaaagtt ttaatacctt tgcctaaacc ctttgcaagt tctggaattt
    25381 tttttgctcc aaaaagcaat acaacaatca ataaaataat caaccaatga cttggacttg
    25441 accaaccacc cattttattc tccttcattc caaatattct gaatttgccc tagattctgc
    25501 cctttggttc taaatttatg ggcgattaaa atcgctcgca atgcttcata actttgcttt
    25561 aactcatcgt taatgataag ataatcatac tcactaagct ctttcatttc atcactagcg
    25621 ttttgtaatc ttttttctag ttgtattatt gtatcagtat ttcgcttaat aagtcttttt
    25681 tttaactcat ctttattttt tgtagtaata aaaacagaaa caatcttatc agccattttt
    25741 tttctggcta ttttaaatcc ttgcacatca atatcaaaaa caactatttt tccattatct
    25801 aaagcatttt gagtgtgctt taaagaagta ccataaaaat tttcatgcac tctagcccat
    25861 tctagaaaat gatcactatc tatacctttt tgaaattctt catgggatat aaaatgataa
    25921 tgtattccat ttttttcacc ctctcttggt ttgcgagttg ttgaagaaat agaaaaataa
    25981 agctcatctt caaattcatc aaaaagtttt tttaaaagag ttgattttcc agcaccacta
    26041 ggacctgaaa tcaacaaaac aaaaccttgc aatttcaatc ctctttaaaa ctaatgttta
    26101 tatttatatt catattcata cccttaagag cagcttttaa ggtatcatct ttaatacttg
    26161 aagtgatcgc tcctgctatg ctttggctaa gctcattaac tatctcttcg ctattatcat
    26221 ctttagttgc atcacttgct ataggctctt catttttttc taagatttcc tctccaagag
    26281 cttcttgtat atcactttct ttcaatgcat caaaatcact tatatttaaa tttggcacaa
    26341 ccacttcctc ttcatttgtt cctaattctt tatcgtctag aattggttca tctttaaaat
    26401 cttctaaaac cttgctacta ttttcactat caataccata atcaagctca tcaagttgag
    26461 ctagttcttc tttgatttga tcttgagtac tcaaatttga agcaaaatca tctatttcat
    26521 cttgaacatc ttcttccaca acaggagcaa actcctctaa attttcctct gattcttcat
    26581 tatattttgc ttgacctaaa aattcagcat cctcaggaag atcatcaaaa tccatttctt
    26641 tttcttgctc ttcaaccaca ggaagatcat caaaatcgct tatattagct tgtaattctt
    26701 tattat
//
LOCUS       DAPIWQ010000005        24180 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.005, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000005 DAPIWQ010000000
VERSION     DAPIWQ010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24180)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24180)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24180
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.005"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..1172
                     /locus_tag="RJ267_000158"
     CDS             <1..1172
                     /locus_tag="RJ267_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HDV7388049.1"
                     /translation="RKRYIFATCMAFIILNLCFFKYFPSIKGSVDEILNFFGLEFLNI
                     DLVLPIGISFYTFTSITYLVEVYQKRRLESFLNLATFLSFFPTLLSGPIMRSSFFFEQ
                     AYQKREFKHANLIIILLVFGIVKKVLIANYLGIYAKSILDFPQSYNFIQLLSAIYAYA
                     IQIYCDFSGYVDLVCAFALMLGFTLPSNFNMPYLAKNLKDFWARWHISLSTFIRDYIY
                     IPLGGNRKGMPRTIVNILIAFILSGMWHGNTLAFIVWGLLHGIGIVFIHLLALSKFSL
                     QKIPALGRFLTFQFVCFTWIFFYYSKNLEDAIEYFKACYYNFFQIPSYNDIYMLVAFG
                     VLFMIYPLFINFKEYCIKILNLTPFLLKPFIIAFILLLVFAFMPDGIPDFIYSSF"
     gene            1173..2183
                     /locus_tag="RJ267_000159"
     CDS             1173..2183
                     /locus_tag="RJ267_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF459 domain-containing protein"
                     /protein_id="HDV7388050.1"
                     /translation="MSVVRFFFILIIVLGLVVVVMNQSISSYIEQKYHFAFYPHNDLL
                     KEANGFKIKLEQIRAILSNEPLLQTNEETTNQESKSTDENLSKIDKVLNTLENDENTS
                     HKETNLTLIQDANISFIDNTKLELQNGDEFLFIGDSLMQGVAIALNRDLRNLNLKVTD
                     LSKQNTGLSYKSYFDWSKATNEAFIKNSNIKYLVVLLGANDPWDIKKGGNYHRFGSLS
                     WIDIYTSRVDEIIKIAKKHKAKVFWFEIPPVKKEDLNKKIQVLNKIYSDEILKNKEIF
                     INTKLFFSVNDEYSAYIKDENNRSIKVRTDDGVHFTPSGAREMSKLLLEHIKLKEENA
                     SK"
     gene            2170..3348
                     /locus_tag="RJ267_000160"
     CDS             2170..3348
                     /locus_tag="RJ267_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HDV7388051.1"
                     /translation="MLVNKFKIILLFFIIFTSSYAQNLNTNDTIDSILNQNKNHSALT
                     SYVLKKDLKNLEKKLEKNQNIGIRIYGDSHMAADFFPRVIRGYLIRSNSIGFAYPLQP
                     KYQQNLNLVYSYKNFEILNSRNPANAGHNFPLGGIIAKAKIKGAKINLDTTLDKKKFK
                     IGFLFKAKQNTNAFSIKDAKNQSYELRTTQINKWSYKELELDLPLQISALQKDAELGG
                     YFITNKDNNVFLDTIAINGAKSDLWLSWNQTVVKKELGLLHNDLIILAYGSNDALFKG
                     FEKQKFKNNLKKWISILKTYNKNAVIMLISPPTVVQKQGKNYKLAPDFFTIRKALYEV
                     AKEEKTLIFDMHQFMQDSGGKNKWIEQKLSLNDVHLTIKGYELMAKKLLEDLKNIIDY
                     "
     gene            complement(3351..4721)
                     /locus_tag="RJ267_000161"
     CDS             complement(3351..4721)
                     /locus_tag="RJ267_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HDV7388052.1"
                     /translation="MKIILSIFLAFFLSACGVKLSLPKEVDLTQEQMKDLNLTYDWYR
                     SYDNAKLNEFLNFVLLNNSDINIARKTLLSALARADLIDYDLYPTLSGNLGFGADKDL
                     NSGKQSKNFNNSLNLSYELDIYGKLRDSASASEFSAKASAYDLENLKISMINTALNDV
                     FELAYFNDVDKLLRAYLSNLEQMKELYNYKYKLGKIEELDLLNIEQSLLRAKQNLLSN
                     DQNRNLLIKNLQDLLARQEGFAYIEYFKTLSLNDFKTLSPDFNIPLKALAYRADVRSK
                     LNSLKSAFKDYSSMQKSILPSISLGGALSGSDKKIDDSFKFEILSGNVKISLPFLDYG
                     RVKQNIKISQFAYEQLLISYEQVLQSAMNEFALNYKDYQSDTLLLQNLQNINIKQELI
                     TKAYYEKYILGKSELKDYLDANNTLNSTQQEFLRARFNLLKTINSYYQITALSFNDKN
                     LEFPKY"
     gene            complement(4723..6648)
                     /locus_tag="RJ267_000162"
     CDS             complement(4723..6648)
                     /locus_tag="RJ267_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7388053.1"
                     /translation="MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDTPSSGTYVFDEYEVTKLNNDEKARLRREKIGFIFQRYNLLSLLSAKENVSL
                     PAVYAGKNLQERSQNAKKLLNDLELAHKLDSKPNELSGGQQQRVSIARALINGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNEQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDT
                     KKEKAQEKLILKTMPKEKKTLTLLKNQAFECFKIAYSSILAHKLRSILTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIEIRPGKGFGDLRSGKTRLNFSDLETLRSLE
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLRIDAGRILNNDDVKNSTNV
                     AVLDFNAKKNLFPDEKSENILGRVVLFNSQPFKIIGVLQKDTDKPIEDNVVRFYIPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQKDFFTFNSDTFKQAIT
                     ANKRTTTILTACVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICTIGAILGVILSIFVIFAFNTLSTDFPMILNAYSVLLGLLSSMFIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            complement(6648..7820)
                     /locus_tag="RJ267_000163"
     CDS             complement(6648..7820)
                     /locus_tag="RJ267_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDV7388054.1"
                     /translation="MKKKIVLIILIAILGSVGAYFIFFNNDEKISYLTQKIQKKDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIANKQYQREQKLYAAKASSLENLETQKNNYYTLKANVAELN
                     AQVVQLEITLKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDE
                     MEVRMEIAEADVSKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSS
                     SSSSSSSSSNAIYYYAKFYVANKDDFLRIGMSIQNEIVVASAKAVLAVPTYAIKSDPK
                     GYYVEILENQKAVKKYVKLGIKDSINTQILEGVNEDEELIVSSSADGLAPKMKLRF"
     gene            complement(7899..9089)
                     /locus_tag="RJ267_000164"
     CDS             complement(7899..9089)
                     /locus_tag="RJ267_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7388055.1"
                     /translation="MQKLVENLALKYYDKVVDLRHQIHMHPELEFEEENTAHLVCKIL
                     DEFGIKYQKNIAKTGILAIIEGKKKSQKKPKCVLLRADMDALPVQEKTNLSYASKIDG
                     KMHACGHDGHTAGLLGAALILNELKDEFCGTIKFMFQPAEEGSGGAKPMIESGVLENP
                     YVDAVFGCHLWGPLLENTAQIVSGEMMAGTDIFDLEFIGRGGHGAHPHTCIDPIIMTT
                     QFVNNIQSVISRRLAPYEAGVITVGQICAGTTYNVIPTNAYLKGTVRFLNDKTQDILK
                     SSLEEVAAATAKSNGGDYKLKYTKEFPPLINDEKAVLIARKAFAKVLGEENIIVSSKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLNHPALHHSSTFCWDDENLKVLMQGDVMMALE
                     FLNL"
     gene            complement(9098..9978)
                     /gene="ppk2"
                     /locus_tag="RJ267_000165"
                     /pseudo
     CDS             complement(9098..9978)
                     /gene="ppk2"
                     /locus_tag="RJ267_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344034.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
     gene            10073..11776
                     /locus_tag="RJ267_000166"
     CDS             10073..11776
                     /locus_tag="RJ267_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HDV7388056.1"
                     /translation="MRIFGIILLSFCLCFASILSLNEAFNVKSNSYNNSISIDIELGK
                     DIYLYSNKLKLYINEKDISSLINLPQSSTRGNENVYYQKLNLALPNLLLERFAKNTTN
                     LIKLEFQGCSEQGLCYNPQTWYFDLISKKDAFEISKPYKAQKTDKKTKIESEESSIAN
                     FLATDNFFWILLSFFGYGLLLSLTPCILPMIPILSSLIVAKSNAKFSKKYSFFLSFIY
                     VFFMSLAYAIAGVIASFLGASIQGILQKPIILILFALIFIAFAFAMFGAFRFELPLRF
                     QTFIHKKSEKGKGVVGIAIMGFLSALIVGPCVAAPLAGALIYIANTGNALLGGSALFI
                     MSFGMGIPLLFIGLGLGFIKPGFWMEKVKIFFGFVMLAMAIWILSRIIEENYILIAYG
                     ILGVFFSVFMGIFEKSFTIISKIKKSILILILAYSLSIFLGGLFGAKNFLNPLNFNTI
                     SASKHALSYDYINNFEQLKQEIQTNTKPIMLDFTASWCENCKLLDELTFSDERIIQKM
                     QNYKLIKVDVSENNNEQIKTMKEFNVFGPPVLIFFENGKEKLKITGFISADDLLKKIE
                     P"
     gene            11773..12441
                     /locus_tag="RJ267_000167"
     CDS             11773..12441
                     /locus_tag="RJ267_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HDV7388057.1"
                     /translation="MKIQSLQIGKIKNYKNFQSAFIKDTYLEETQIDFLGVLDDQIAD
                     KIHHGGYHKAIFTNSCQNYPIWERFLNKKLNFGSMGENLSIDGLCEQNVCIGDIHQFS
                     NAILQVSEPRKPCVKISKIHNNPNFTHEIFKTGLSGWYYKVLQVGQIRKHENIKILEK
                     NSTSLSVFELNQLFYSPHQILKQNPNLLDKLEKLNSLISQNWHETIHKRLKNTYDISY
                     MDSL"
     gene            12492..13835
                     /locus_tag="RJ267_000168"
     CDS             12492..13835
                     /locus_tag="RJ267_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDV7388058.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCIAMIIIGIPVILVENVIGRKAMTNSVDAFKQKWQSIGYMGLLGSFGIMAYYMVLGG
                     WVLVYIWELTLGNFSLANVVSKEFTHQFFNDKIAFNPLGVGIFTTVFVIINYIILKRG
                     IIDGIEKSVKFLMPLLFICLIIVVGRNLTLDGAMAGVKFYLEPDFSKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLNKNENMAKTAIYTGVLNTIIAVLAGFMIFPALFSAGL
                     APDSGPSLVFETLPIAFSHIHFGTIVCILFFVLLLIAALTTSLPIYQVIISVLEEKFK
                     YSKNLSINLTLGFIFILGNLPCILTYGPWRDIVIIKGKNIFDSFDFISGNILFVLTAF
                     FCCIYVGWILGKQESLKELSNNNTLKSSWFGIWFYYVKYIVPLIILIIFIYGILN"
     gene            complement(13827..14702)
                     /locus_tag="RJ267_000169"
     CDS             complement(13827..14702)
                     /locus_tag="RJ267_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HDV7388059.1"
                     /translation="MNFIKTISPIQKINFNGFEFYIKRDDLLGEINGNKARKLAFYIH
                     QRYPKNQSFVSYGGSQSNALAALSIFAKQRSYKLVFACEKISTFLKNNPCGNYALALE
                     NGVDFVENIHSLSLKQFALSLCKKDDVFIEQGIANLEAQYGYMELAQEIQMQSQSLKL
                     DFDIFLPSGTGTSAAFLAKYSKFKVFTCACVGDIKYLKKQILTLDPSYDFSNLEFLTS
                     DKKYHFAKPYKEFYELYMDLKLKCNIEFDLLYDILGLSIALKQEWKKPLLYIHQGGIL
                     GNSTMLERYKFKKSV"
     gene            complement(14689..15642)
                     /locus_tag="RJ267_000170"
     CDS             complement(14689..15642)
                     /locus_tag="RJ267_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDV7388060.1"
                     /translation="MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDL
                     KEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN
                     YKQLSKDLNSTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLS
                     KELQSKLDNNITIDEKIGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDP
                     KIFSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGRS
                     FSDPVFVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            complement(15639..17081)
                     /locus_tag="RJ267_000171"
     CDS             complement(15639..17081)
                     /locus_tag="RJ267_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HDV7388061.1"
                     /translation="MDIKSDEISELVLPEGKDARGSLVYFKIIFIPAFLYILILLGYF
                     NVIDFKVELHTVIMTGVIFFTALIFARHSAEYAYSIFEQQKDEFKQALKRHIMRHFLA
                     IGKDTKSNANFDDFAYTYIKGARNENFASIGSAIFPMMGILGTFISIAFSMPNFSSSD
                     TAALEQEIADLLSGVGTAFYVSIYGIFLALWWMFFEKYGKSKIDRLLNRQKNATSGFF
                     WTKEELDQRYLTESLQHFEKIGAIFKQVSNDDFFAELDHAIDRKFGIFQDMLNVEEKA
                     IRLSSEHIKQTMGELSKAQRDQRDLGKLYSEMLNGIGLLNQNLKEINTRMSEQYNRLL
                     DISSDKIHHLDKTLSAFDEKIERFGKNFELYEKAMLESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDELKKEMKALDEETSQMMSKLSGDENQNKENETKQIEDFSES
                     KTEENQDEIQAEISKQESNDELKNEDKENK"
     gene            complement(17176..18240)
                     /gene="fbaA"
                     /locus_tag="RJ267_000172"
     CDS             complement(17176..18240)
                     /gene="fbaA"
                     /locus_tag="RJ267_000172"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HDV7388062.1"
                     /translation="MGVLDIVKAGVISGDELNKIYDYAKAEGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILH
                     TDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSEESLEENLSTCEVYLQKLD
                     ALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKNAVSY
                     GVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGE
                     ESMIKRLEIAFEDLNCINKN"
     gene            complement(18240..19061)
                     /gene="peb4"
                     /locus_tag="RJ267_000173"
     CDS             complement(18240..19061)
                     /gene="peb4"
                     /locus_tag="RJ267_000173"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PEB4"
                     /protein_id="HDV7388063.1"
                     /translation="MKKFSLVAATLIAGVVLNVNAATVATVNGKSISDTEVSEFFAPM
                     LRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILVNVY
                     QEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGK
                     ELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK"
     gene            19142..19768
                     /gene="nth"
                     /locus_tag="RJ267_000174"
     CDS             19142..19768
                     /gene="nth"
                     /locus_tag="RJ267_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HDV7388064.1"
                     /translation="MKRNLEIKELFLKHFDKPVTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPDLFKAYPDIKSLANANLSSLKTYIQTCSFFNNKAQNLIKMAKAVCENFDGEI
                     PLDEQNLKSLAGVGQKTAHVVLIEWCGANFMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTRTFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELK"
     gene            19765..20415
                     /locus_tag="RJ267_000175"
     CDS             19765..20415
                     /locus_tag="RJ267_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HDV7388065.1"
                     /translation="MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFY
                     LNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFEDDTNIPKKYRTTWSNYKNSGYTR
                     GHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
                     LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF"
     gene            20426..21058
                     /locus_tag="RJ267_000176"
     CDS             20426..21058
                     /locus_tag="RJ267_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HDV7388066.1"
                     /translation="MEINALTITTLYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIILICFCALVATKIPRVVTKLETLFLTLDAIGL
                     VVFSILGAQIAIDQNHGFIIAVAAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGAIYYSLIIWLELNALVCTLLTLFIGVFARLLAIKYQWSLPIFSYNEEK"
     gene            21116..21550
                     /locus_tag="RJ267_000177"
     CDS             21116..21550
                     /locus_tag="RJ267_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HDV7388067.1"
                     /translation="MRRLSILLAILIVINITACDSKTENYYKNLPSEAKEKAKECKES
                     GTLSEDCINALKVGVKPTNEEGKYSPNTPKKSDNQILEALKQNDLKKEKTTKDINQSS
                     ENNESIIIPPIAETPSEIYPSKTTENNQSSIFSDDVNMTQEK"
     gene            21547..21768
                     /locus_tag="RJ267_000178"
     CDS             21547..21768
                     /locus_tag="RJ267_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HDV7388068.1"
                     /translation="MTMKITLFLSLIGIFFAACEQTKSVEYYQNHPEEAKKRSLECRH
                     KAIISQDCVNAYKIGFPKDEWEDENISNP"
     gene            complement(21758..22468)
                     /gene="cmoA"
                     /locus_tag="RJ267_000179"
     CDS             complement(21758..22468)
                     /gene="cmoA"
                     /locus_tag="RJ267_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HDV7388069.1"
                     /translation="MMKDELFKQSPKKQFEFDKSVASVFDDMINRSVPFYRENLELCG
                     NLLAKILPTNASVCDLGCSSANFLIFLANLRKDFKLFGVDNSASMLEVAKSKAKAYGL
                     DISFFEANLCEFDFFTCDVFVANYTMQFIRPPKRQELLDQIYKNLNSKGILIMSEKIL
                     YEDAFLSKNIIELYADYKEKQGYSKFEIAAKREALENVLIPYSQKENLNMLEKAGFKK
                     IESIFKWANFETFIAFKD"
     gene            complement(22455..23309)
                     /locus_tag="RJ267_000180"
     CDS             complement(22455..23309)
                     /locus_tag="RJ267_000180"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HDV7388070.1"
                     /translation="MLNIFTTISKINITSLAIGCFDGMHLGHLKLVKCLDENGALLVI
                     NKFKGQFLCSNRQKEEISGKKVIEVDFESIKSLDGRDFLSFLKKEFVNLKFIVVGYDF
                     SFGKNRAYNAKDIESLSGIKTIIVDEFSIDGIGVHASLIKDFLSKANLQKAKEFLGRD
                     YSIKGKMIKGQGLGSKELFATINLDCEGYFLPQNGVYVTLLKSQRKTYKSVSFLGVRS
                     SDENFAIESHILEELGENFTQGEFFELEFISFLRENQKFQDLKKLKNQIAKDIEQARE
                     LLRKNDER"
     gene            complement(23275..24036)
                     /locus_tag="RJ267_000181"
     CDS             complement(23275..24036)
                     /locus_tag="RJ267_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HDV7388071.1"
                     /translation="MRFDFFVSKRLNISRNKALELIENEEILLNGKSFKASFDVKNFL
                     ENLKKTQDLNPEDILLANELKLDLLSEIYVSRAALKLKKFLEENDIEIKHKNCLDIGS
                     STGGFVQILLENQALKITALDVGSNQLHPSLRVNEKIILHENTDLRAFKSEEKFELVT
                     CDVSFISLINLLYYIDNLALKEIILLFKPQFEVGKNIKRDKKGVLKDDKAILKARMDF
                     EKACAKLGWLLKNTQKSSIKGKEGNVEYFYYYIKN"
     gene            complement(24033..>24180)
                     /locus_tag="RJ267_000182"
     CDS             complement(24033..>24180)
                     /locus_tag="RJ267_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388072.1"
                     /translation="LIQKEKDLFEKDLKDLREIFKKNAFEIGIWWFSKEKEDLEKRIN
                     ESLK"
BASE COUNT         8219 a         4088 c         3096 g         8777 t
ORIGIN      
        1 gtcgcaagcg ttatattttc gctacttgca tggcttttat tattttaaat ttatgttttt
       61 ttaaatactt tcctagcatc aaaggaagtg ttgatgagat attaaatttt ttcggtttag
      121 aatttttaaa tattgattta gtattaccaa taggaattag tttttatacc tttacttcta
      181 ttacttatct tgtagaagtt tatcaaaaac gccgtttaga aagtttttta aatttagcaa
      241 ccttcttatc attttttcca acactacttt cagggcctat tatgcgaagt tcttttttct
      301 ttgaacaggc ctatcaaaaa cgcgaattta aacatgcaaa tttaatcatc atcttgcttg
      361 tttttggtat agttaaaaaa gttttaatag ccaattacct tggaatttat gctaaaagta
      421 ttttagactt tccacaatct tataatttca tacaactttt aagcgcaatt tacgcctatg
      481 caattcaaat atactgcgat tttagcggat atgttgattt agtttgtgct tttgctttaa
      541 tgttaggttt tacccttccg tctaacttta acatgcctta tcttgcaaaa aacctaaaag
      601 atttttgggc tagatggcat atcagtcttt caacctttat aagagattat atctatatac
      661 ctttaggggg caatagaaaa ggaatgccac gcactatagt taacatactc atcgctttta
      721 tactttcagg tatgtggcat ggcaatacac ttgcttttat tgtttggggt ttattgcatg
      781 gtattggcat agtttttata catttgctag ctttaagcaa atttagttta caaaaaattc
      841 cagctttagg aagattttta acctttcaat ttgtatgttt tacttggatt ttcttttact
      901 atagcaaaaa tctagaagat gcaatagaat attttaaagc ttgttattat aatttcttcc
      961 aaattccatc ttataacgat atctatatgt tggttgcttt tggggttctt tttatgatct
     1021 atcctttatt tattaatttt aaagaatatt gcattaagat tttaaatctt actccatttt
     1081 tgctaaaacc ttttattata gcttttattt tacttttggt ttttgctttt atgccagatg
     1141 gaattcctga ttttatttat tcgagttttt agatgagtgt agttagattt ttcttcattt
     1201 tgattatagt gcttggcttg gttgttgtag ttatgaatca gagcattagc tcttatatag
     1261 aacaaaaata tcattttgca ttctatcctc ataatgatct tttaaaagaa gccaatggct
     1321 tcaaaattaa attagaacaa attcgtgcaa ttttaagcaa cgaacccttg cttcaaacca
     1381 atgaagaaac tacaaatcaa gaaagtaaat caacagatga aaacttaagt aaaatagata
     1441 aagttctaaa cactttagaa aatgatgaaa acacttctca taaagaaaca aatctaacct
     1501 taatccaaga tgcaaatatt agttttatcg acaataccaa attagagcta caaaatggag
     1561 atgagttttt atttatcgga gattctttaa tgcaaggtgt tgcaatagcc ttaaatagag
     1621 atttaagaaa tttaaatctt aaggtaaccg atcttagtaa acaaaataca ggcctttctt
     1681 ataaatccta ttttgactgg tcaaaagcca ctaatgaagc ttttattaaa aactcaaata
     1741 ttaaatatct tgttgttctt cttggcgcta atgatccttg ggatattaaa aaaggaggaa
     1801 attaccatcg ttttggctcc ctttcttgga tagatattta cacaagtcgt gtagatgaaa
     1861 tcattaaaat cgctaaaaaa cataaagcca aagttttttg gtttgaaatc cctcctgtaa
     1921 aaaaagaaga tttgaacaaa aaaatacaag tgctcaataa aatttacagc gatgaaattc
     1981 ttaaaaataa agaaattttt atcaacacta agctattttt tagtgtcaat gatgaatact
     2041 cagcttatat aaaagatgaa aacaatagaa gtataaaagt aagaacagat gatggggttc
     2101 attttactcc aagtggcgca agagaaatgt ctaaactttt attagaacac ataaaactta
     2161 aggaagaaaa tgctagtaaa taaatttaaa attatcttat tgttttttat tatttttact
     2221 agctcttatg cacaaaattt aaatacaaat gacacaatag attccatact caatcaaaac
     2281 aaaaatcact ctgctttaac aagttatgta ttaaaaaaag atcttaaaaa tctagaaaaa
     2341 aaattagaaa aaaatcaaaa cataggaatt agaatttatg gagattctca tatggcggct
     2401 gatttctttc cgcgtgtcat aagaggatat ttaatccgct ctaactctat aggttttgcc
     2461 tatcctttac agcccaaata tcaacaaaat cttaatcttg tttattctta taaaaacttt
     2521 gaaattttaa actcaagaaa tcctgctaat gctggacata attttccatt aggtgggata
     2581 atagccaaag caaaaatcaa aggcgcaaaa atcaaccttg atacaacctt agataaaaaa
     2641 aaattcaaga taggattttt atttaaagcc aaacaaaata ccaatgcttt tagcatcaaa
     2701 gatgcaaaaa accaaagcta tgagttaaga actacacaaa ttaacaaatg gtcttataaa
     2761 gaactagaac ttgatcttcc tttgcaaatt tcagccttac aaaaagatgc tgagctagga
     2821 ggatatttca tcacaaataa agataataat gttttcttag ataccattgc aatcaatggt
     2881 gccaaaagtg atttatggct ctcttggaat caaacagttg taaaaaaaga actaggactt
     2941 ttacacaatg atttaattat tcttgcctat ggttctaatg atgcactctt taaagggttt
     3001 gaaaaacaaa aatttaaaaa caatttaaaa aaatggatta gtattttaaa aacttacaat
     3061 aaaaacgctg ttatcatgct aatctctcca ccaaccgtag ttcaaaaaca aggtaaaaac
     3121 tacaagcttg ctcctgattt ttttaccata cgcaaagcat tatatgaagt tgctaaagaa
     3181 gaaaaaactc ttatctttga tatgcatcag tttatgcaag atagtggggg aaaaaacaaa
     3241 tggatagaac aaaagctttc gctcaatgat gtacatctta ctataaaagg ctatgagcta
     3301 atggctaaaa agttactcga ggatttaaaa aatatcatcg attattaaat ttaatactta
     3361 ggaaattcta agtttttatc attaaaactt aaagctgtga tttgatagta agaattaatg
     3421 gtttttaaaa gattaaatct agctcttaaa aattcttgct gggtagaatt taaagtattg
     3481 tttgcatcca aataatcttt taattcgctt tttcctaaaa tatatttttc ataatacgcc
     3541 ttagtgataa gctcttgttt aatgttaata ttttgcaaat tttgcaagag caaggtatcg
     3601 ctttgataat ctttataatt caatgcaaat tcattcatcg cgctttgcaa gacttgctca
     3661 taagaaatta aaagttgctc ataagcaaat tgtgaaattt tgatattttg ctttacccta
     3721 ccataatcta agaaaggtaa agaaatctta acattaccac ttaaaatttc aaatttaaaa
     3781 ctatcatcaa tttttttatc actcccactt aatgctccac ctaaagaaat actaggcaaa
     3841 atagattttt gcatagaaga ataatcctta aaggctgatt ttaagctatt gagtttagat
     3901 ctcacatctg cacggtacgc taaagctttt aaaggtatat taaaatcagg acttaaggtt
     3961 ttaaaatcat ttaaagataa agttttaaaa tactctatat aagcaaaacc ttcttgcctt
     4021 gccaataaat cttgtaaatt ttttatgagt aaattacgat tttgatcatt gcttaataaa
     4081 ttttgtttag ctcttaataa gctttgttct atgtttaaaa gatctaattc ttctattttt
     4141 ccaagcttgt atttatagtt ataaagctct ttcatttgtt ctaaatttga aagataagct
     4201 cgaagcaatt tatctacatc gttaaaataa gccagctcaa acacatcatt taaagctgta
     4261 ttgatcatac ttatttttaa attttcaaga tcataagcac ttgcttttgc actaaattca
     4321 ctcgcacttg cactatctct taatttacca taaatatcaa gctcatagct taaatttaaa
     4381 gaattattga aatttttact ttgtttgcct gaatttaaat ctttatccgc accaaaaccc
     4441 aaatttccac ttaaagtcgg atataaatca taatcaatca aatcagctct agccaaagcc
     4501 gaaagcaaag tttttctagc aatattaata tcactattat tcaataaaac aaaatttaga
     4561 aattcattta attttgcatt atcataagat ctataccaat cataagtaag atttaaatct
     4621 ttcatttgtt cttgagttaa atcaacttct ttaggcaagc taagttttac accacaagcg
     4681 ctcaagaaaa atgctaaaaa aatgctaagt attattttca ttttattcct ttgataatgc
     4741 actaatagga tttaaatttg ctgcatttct tgcagggaaa aaaccaaaaa ccacaccgat
     4801 aaacatagaa cttaaaagtc ccaaaagcac agaataggca tttaaaatca taggaaaatc
     4861 cgtacttaaa gtattaaaag caaaaataac aaaaatcgat aaaatcacac ctaaaatcgc
     4921 ccctatagta caaatcataa ccgcttcgat taaaaactgc atcataatat cttctcttct
     4981 agcccctata gccatgcgta tgcctatttc tcttgttctt tcacttacag aaacaagcat
     5041 gatattcatc actcctatac ccccaacaat caaagcaatc acagccacac aagcggtaag
     5101 tatggttgta gtgcgtttat ttgctgtaat agcttgctta aaagtgtcag aattaaaagt
     5161 aaaaaaatcc ttttgtccgc gtttaatttc taaaattctt ataatagcat tttcagccaa
     5221 agttgaactc acatcatctt taaccttaac tatgatttca cgcaaatttc tatctcctgt
     5281 aagcttattc atcagtgttg tatagggtat ataaaaacgt actacattat cttctatagg
     5341 cttgtctgta tctttttgca aaactcctat aatcttaaaa ggttgagaat taaaaagcac
     5401 cacacgacct aaaatatttt cacttttttc atcaggaaaa agattttttt tagcattaaa
     5461 atccaataca gcaacattgg tactattttt tacatcatca ttatttaaaa ttcttcccgc
     5521 atctatcctt aaaccttcta tagcaaaatt atttacccct actccttcag ctcttgcgct
     5581 taaagaaata ttggtataag ttgccactcc tgaagtattt gaatgagcat caactgcttc
     5641 taaatattct aaagatctta atgtttctaa atcactaaaa ttaagccttg ttttacccga
     5701 acgcaaatcc ccaaatcctt ttccagggcg aatttcaata gtatttgtcc caagtcttgc
     5761 aatagactca agcactttag cttgagagcc taatcctaaa gctacaacac aaactacaga
     5821 agcaatacct atgatgattc caagcatagt taaaatagaa cgaagtttgt gtgcaagtat
     5881 ggaagaataa gctatcttaa aacattcaaa ggcttgattt ttaagcaaag taagtgtttt
     5941 tttctctttg ggcattgttt ttaaaataag tttttcttga gctttttcct ttttagtatc
     6001 gcttaaaatt tctccatctt taatctctat aaccctttta gcttgtgctg caatttttgg
     6061 atcgtgagtt actaagacta tagtatgacc ttgctcgtta agtttttgta aaatttcaag
     6121 caccataata ccgcttttac tatccaaagc tcccgttggc tcatcagcca aaataagctc
     6181 tccgccattg attaaagctc ttgctataga aacgcgttgt tgctgccctc cgcttaattc
     6241 gtttggctta gaatctaact tgtgagctaa ttctaaatca tttaagagtt ttttagcatt
     6301 ttgacttctt tcttgtaaat tttttcccgc ataaactgca ggtaaagaaa cattttcttt
     6361 agcactcagc aagcttaaaa gattgtatct ttgaaatata aagcctattt tttcacgcct
     6421 taatcttgct ttttcatcat tattaagttt agtgacttca tactcatcaa aaacataagt
     6481 tccactactt ggtgtatcta atgttcctat gatattcaaa agtgaagttt taccacttcc
     6541 actttgtcct ataatagcaa caaattcacc tttttctata cttaaactta cattttttaa
     6601 aatggcattt tcgcctatat ttttgcaaat atttttaaga aaaatcatta aaatctcaac
     6661 ttcattttag gagctaaacc atcagcactt gagcttacta tcaattcttc atcttcattt
     6721 acaccttcta aaatttgagt attgatagaa tctttaatgc caagtttgac atatttttta
     6781 acagcttttt gattttccaa aatttcaaca taatagcctt ttggatcgct tttaattgca
     6841 taagttggca ctgctaaaac agcctttgca cttgctacga caatttcatt ttgtatactc
     6901 ataccaatac gcaaaaaatc atctttattg gctacataaa attttgcgta ataataaata
     6961 gcatttgatg agcttgagct tgaagaactc gaacttgatg agcttgagct tgtactagaa
     7021 tcactcactt cagtatcagc tggatctata cttgcaatct tagcatgata agttttttga
     7081 ggatcattaa gcaaagaaaa atcaagctct gttcctactt ttatcttact cacatcagcc
     7141 tctgctattt ccattcttac ttccatttcg tctaaattag ctatacggac tatagtagga
     7201 gtgttttgat tagcattaac tgtttgtcct tcatctacag ctacattaat cacaacacca
     7261 tccataggag cagtaatggt tgtataacct aaatcttttt gtgcattttt aagagtgatt
     7321 tcaagctgaa ctacttgagc attaagctct gcaacattgg cttttaaagt ataataatta
     7381 tttttttgag tttctaaatt ttcaagagaa cttgctttag ctgcataaag tttttgctct
     7441 ctttgatatt gcttattcgc aatctcaagg gcaacttttt tactctctaa attagcctta
     7501 gcactttcaa gctgagcttt tgtaatatct aaatcgtttt gttgtttatc tttatcaatt
     7561 tgagcgatca aatcaccttg ctttacatga gttcccacat caacataaag ttttataatt
     7621 tgtccactaa cttgagcacc cacatcgact tgatctttgg catatacctt tcctactgcc
     7681 tctatggttt gagatatatc ttttttttgt attttttgag ttaaatagct gattttttca
     7741 tcattattaa aaaaaataaa ataagcccca acacttccaa gtattgcaat taaaatgatt
     7801 aaaacaatct tctttttcat aataacaaat cctaaagaaa aatcaagatt aaattttact
     7861 cattttttgt gaattttttg tgaattttta attctatttt ataaatttaa aaattctaaa
     7921 gccatcatca catcaccctg cattaaaact tttaaatttt catcatccca acaaaaagta
     7981 gaactatgat gcaaagctgg atgatttaaa tcctttgaaa ttccaacaaa tacataagcc
     8041 cccattcttt ctcgtgttaa aaaagcaaaa tcttcagccc ccatgtcagg tttagaagaa
     8101 acaatgatat tttcttctcc taagaccttt gcaaaagctt ttcttgctat taaaacagct
     8161 ttttcatcat taatcaatgg aggaaattct ttagtatatt taagcttata atctccgcca
     8221 ttggattttg ctgtagcagc agccacttct tctaaagaac tttttaaaat atcttgcgtt
     8281 ttatcattta aaaagcgcac agttcctttt aaataagcat ttgtaggaat aacattataa
     8341 gtagttcctg cacaaatttg acctacggta atcacccctg cttcataagg ggctaaacgt
     8401 ctagaaataa cactttgtat attatttaca aattgcgttg tcataattat aggatctata
     8461 caagtgtgcg gatgagctcc atgccctcct ctgccaataa attccaaatc aaaaatatcc
     8521 gttccagcca tcatttcacc acttacaatt tgagcagtat tttcaagcaa aggcccccat
     8581 aaatgacaac caaaaactgc atcaacataa ggattttcca atacacctga ttctatcata
     8641 ggtttagctc caccgcttcc ctcttctgcg ggctgaaaca taaatttaat cgtgccacaa
     8701 aattcatctt taagctcatt taatatcaaa gcagctccca aaagccctgc tgtatgtcca
     8761 tcatgtccac atgcatgcat cttaccatca atttttgaag catagcttaa attagttttt
     8821 tcttgcacag gcaaagcatc catatccgct cttaaaagaa cacattttgg ttttttctga
     8881 ctcttctttt ttccttctat aatagctaaa attcctgttt ttgcaatatt tttttgatat
     8941 ttaatgccaa actcatctaa aattttacac actaaatggg ctgtattttc ttcttcaaat
     9001 tcaagctcag gatgcatatg aatttgatgt cttaaatcaa ctactttatc atagtacttt
     9061 agtgctaaat tttcaaccag cttttgcatt cttttcctta atctaaatct tttattttct
     9121 catctgcttt tttactgtca agtttttcca aattcgcctc catttttcgt atttcttctt
     9181 ctccactacg cactaatttt gcatcaattt tggaaaaatc tccagttttt ttatttggat
     9241 attctacctt agaaagtata aaacgcaata aatttaatct tgcttttttc ttatcatcag
     9301 aagaaataat agtccaagga caagttggag tattagatgc taaaagcata gagtatttag
     9361 ctaaagtata tttatcccat aattcttgcg atttttgatc cacaggagat aatttatatt
     9421 gtttaagtgg atcgcttcgg cgtttttcaa aacgtttttt tgctcgtctt ttgatactga
     9481 aaaataaaat ttaaaaaaaa taatatcact atttgaaatc atattttcaa acaaaggcac
     9541 ttctcttaaa aaatctttat gttgttgcgg tgtacaaaaa cccataaccg gttctactcc
     9601 tgcacgatta taccaagatc tgtcaaaaat cacaatctca ccggctgagg gcaaatgtgc
     9661 tatataacgc tgaaaatacc actgtgtttt ttccacatca ctaggttttt caagagccac
     9721 aacgcggcaa ccacgcggat ttaaatgctc aatcaaacgt ttaatcgccc caccttttcc
     9781 agccgcatca cgcccttcta taagtataag aacctttaaa cccttggctt taacatgatt
     9841 ttgaaatttc aaaagctcaa tttgcaaatt ctttaaatct ttttcatatt ctattgtact
     9901 tttctttctt ttaacagaaa cataaatttc attcttttta acaaccgctt gcgcttttgg
     9961 agaattattt tcttgtattt tcaaaccttt ataaagtatt taaagtaaat ttaccataat
    10021 aaattataat tgaagttaaa aataaaggaa aaaataagtt tttaggaaat ttatgcgtat
    10081 ttttggtatt attttattaa gtttttgttt atgttttgct tctatattat ctttaaatga
    10141 agcttttaat gtaaaatcaa actcttataa taactctatc tcaattgata ttgaacttgg
    10201 aaaagatatt tatctttatt ctaataaact taaattatat ataaacgaaa aagatataag
    10261 ttctttgatt aatctacctc aaagttctac aagaggtaat gaaaatgttt attatcaaaa
    10321 attaaattta gctttgccaa atttattact agagcgcttt gcaaaaaata ccacaaattt
    10381 aatcaaactc gaatttcaag gctgttctga acaaggcttg tgttataatc ctcaaacttg
    10441 gtactttgat ctcatttcta aaaaagatgc ttttgaaatt tcaaaacctt acaaagctca
    10501 aaaaacagat aaaaaaacta aaattgaatc tgaagaaagc tctatagcaa attttttagc
    10561 aacagataac tttttttgga ttttgctaag tttttttggc tatggacttt tactctcctt
    10621 aacaccttgt attttaccta tgattccgat tttatcttct cttatcgtag caaaaagtaa
    10681 tgctaaattt tcaaaaaaat atagtttttt tctctctttt atctatgttt ttttcatgtc
    10741 tttagcctat gctattgctg gagttatagc aagttttcta ggagcaagta ttcaaggaat
    10801 tttacaaaaa cctattattt taattctttt tgctctaatt ttcatagctt ttgcttttgc
    10861 tatgtttgga gcttttcgtt ttgaattgcc attaagattt caaaccttta tacataaaaa
    10921 aagcgaaaaa gggaagggag ttgtaggtat agccatcatg ggatttttat ctgctttaat
    10981 agtaggtcct tgcgtagcag ctcctttagc aggtgcttta atttatatag ccaatacagg
    11041 caatgcttta ttaggtggta gtgcactttt tatcatgagt tttggcatgg gtataccttt
    11101 gcttttcata ggcttaggat taggttttat taaacctggt ttttggatgg aaaaagtaaa
    11161 aattttcttt ggttttgtta tgttggctat ggctatttgg atactttcta gaattattga
    11221 agaaaattac attttaattg cctatggaat tttaggtgta ttttttagtg tttttatggg
    11281 aatttttgaa aaaagtttta caataatttc taaaattaaa aaaagtattt taattcttat
    11341 tttagcttat tctctaagta ttttcctagg aggacttttt ggggctaaaa atttcttaaa
    11401 tcctttaaat ttcaatacta tatctgcctc aaaacatgct ttaagctatg attatatcaa
    11461 caattttgaa caattaaagc aagaaataca aacaaataca aagcctataa tgcttgattt
    11521 tactgcatct tggtgtgaaa attgcaaact tttagatgaa ttaaccttta gcgatgaaag
    11581 aatcatacaa aaaatgcaaa attacaaact tatcaaagtt gatgtaagcg aaaataataa
    11641 tgaacaaatt aaaaccatga aagaatttaa tgtttttggc ccacctgttt taattttctt
    11701 tgaaaatgga aaagaaaaat taaaaatcac gggttttatc agtgctgatg atttattaaa
    11761 aaaaatagaa ccatgaaaat tcaaagtttg caaataggga aaattaaaaa ctataaaaat
    11821 ttccaaagcg catttattaa agatacttac ctagaagaaa cacaaattga ttttctaggt
    11881 gttttagatg atcaaatagc tgataaaatt catcatggag gctaccataa ggctattttt
    11941 accaactctt gtcaaaacta tcctatatgg gaaagatttc ttaataaaaa gctaaatttt
    12001 ggctcaatgg gtgaaaattt gagcatcgat gggctttgtg aacaaaatgt ttgcataggt
    12061 gatatacatc aattttcaaa tgcaatactg caagtaagcg aacctagaaa accttgtgta
    12121 aaaatttcta aaattcacaa taatccaaat tttacacatg aaatttttaa aacgggcttg
    12181 agtggatggt attataaagt tttacaagtt ggacaaatac gaaagcatga aaacattaaa
    12241 attttagaaa aaaattctac ttcacttagt gtatttgaac tcaatcaact tttttactcc
    12301 ccgcatcaaa ttcttaagca aaatccgaat ttattagata aattagaaaa attaaactct
    12361 ctcatatctc aaaattggca cgaaacgata cacaaacgct taaaaaatac ttacgatata
    12421 agctatatgg atagcttata agtttttaaa gttattttta ggtaaaataa ttctttttcg
    12481 aaaggataat catgcaaaga caaacatgga gtagcacact aacttatatt ctaacagttg
    12541 ctggagcaac cataggattt ggagcaactt ggcgttttcc ctatcttgta ggagaaaatg
    12601 gtggcggtgc ttatgtatta gttttttgta tagccatgat tatcataggc attcctgtta
    12661 ttttagttga aaatgtcata ggcagaaaag cgatgacaaa tagcgtagat gctttcaaac
    12721 aaaaatggca aagtattgga tatatgggac ttttaggaag ctttggcata atggcttact
    12781 acatggtact tggaggatgg gttttagttt atatttggga attaacccta gggaatttta
    12841 gtcttgccaa tgtagtaagc aaagaattta ctcatcagtt ttttaacgac aaaatagcct
    12901 tcaatccttt aggagttggt atttttacca ctgtttttgt aattattaat tatattattt
    12961 taaaaagagg cattatagat ggtatagaaa aatccgtaaa atttttaatg cctttattat
    13021 ttatctgtct tattattgtt gtaggacgca atttaaccct tgatggagct atggctggag
    13081 ttaaatttta tcttgaacct gattttagta aaattttatc accaaaactt ttaatcgatg
    13141 ttttaggaca agtctttttt gctttatccc taggttttgg ggtaatgata acactttcat
    13201 ctcatcttaa taaaaatgaa aatatggcaa aaaccgctat ttatacaggg gttttaaata
    13261 ctatcatagc tgttttggct ggttttatga tttttccagc acttttctca gcgggacttg
    13321 ctccagatag cgggccttct ttggtttttg aaactttacc tatagcattt tctcatatcc
    13381 attttggcac tattgtgtgt attttatttt ttgtcttact cttgattgca gctttaacca
    13441 caagcttgcc aatttatcaa gttattatta gcgtattaga agaaaaattt aaatattcta
    13501 aaaatctttc tattaaccta actctagggt ttatcttcat acttggcaat cttccttgta
    13561 ttctaactta tgggccttgg cgtgatattg ttatcatcaa aggaaaaaac atttttgata
    13621 gttttgattt cattagtgga aatattttgt ttgttttaac tgcatttttt tgctgtattt
    13681 atgtaggttg gattttaggc aaacaagaaa gtctaaaaga acttagcaat aacaatacac
    13741 ttaaaagttc atggtttgga atttggtttt attatgtaaa atatatagta cctttgatta
    13801 ttttaatcat ttttatctat ggaattttaa actgattttt taaatttata tctctctaac
    13861 atagtggaat ttcctaaaat tccaccttga tgtatataaa gcaatggttt tttccactct
    13921 tgttttaatg ctatacttaa tcctaaaata tcatacaaca agtcaaattc tatattgcac
    13981 tttaacttta aatccatata aagctcataa aattctttat acggcttagc aaagtgatat
    14041 tttttatcac ttgttaaaaa ttctaaattt gaaaaatcat agcttggatc taatgttaaa
    14101 atttgttttt taagatattt aatatcacct acacaagcgc aagtaaatac tttaaattta
    14161 gaatactttg ccaaaaaagc tgccgaagtg cctgtacccg aaggtaaaaa aatatcaaaa
    14221 tcaagcttta aactttgact ttgcatttga atttcttgag caagttccat atagccatat
    14281 tgagcttcta aattagctat accttgttct ataaaaacat catctttttt acacaaagac
    14341 aaagcaaatt gctttaagga taaagaatgg atattttcta caaaatcaac accattttct
    14401 aaagctaaag catagtttcc acaaggatta ttcttaagaa aagtagaaat tttttcacaa
    14461 gcaaaaacaa gcttatatga tctttgttta gcaaaaatac ttaatgccgc caaagcatta
    14521 ctttggcttc ctccataact tacaaaagat tgatttttag gatatctttg atggatataa
    14581 aaagcaagtt tcctagcttt atttccatta atttccccta ataaatcatc tcttttaata
    14641 taaaattcaa atccgttaaa attgattttt tgtataggac taattgtttt aatgaaattc
    14701 aaagaatttt tctacatcct ttaaagcatt atcattttta atgctaaatt ttatttctat
    14761 gcgacgactc ttatccttat cttcaactcc gttgacaaac acaggatctg aaaaagaacg
    14821 tccacttgcc attaaaagct tttgaagctt atcactctta taaaaagtat agataaaatt
    14881 catcacctca taagctcttt tttgcgacaa atctaaatta taaatataag atccatcact
    14941 atcagtatgt ccttcaataa tgatattttc aatgttagaa aaaatttttg gatcttcaag
    15001 aatagcatca aaatattcgc ttaagatttt tctcaaactt gcctttgcct cattttttaa
    15061 cacataagaa tctttatcaa aaagtacttc agcaggcaaa gaaatagatc ctatcttttc
    15121 atctatagtg atattattat caagcttact ttgtaattcc ttgcttaaat tttcacgaat
    15181 caaaccaaga ttttgcacct tttctttagc tttttgaaaa tcttcttgta aatttttaag
    15241 ctcttcatct tttttctcta gttgacctag taaaatcaaa atttgcttat ctttattatc
    15301 taaagttgag tttaaatctt tacttaactg cttgtaattt gtaatattag cctctaattc
    15361 tgctttttga gaattagcaa gatttaaagc actagaagca ttgtttaaat cagaacttag
    15421 tttaaacact atggcttctt tatttctaag ctcttcttta ctctcctcta agcgtgcctc
    15481 ttgtttattg agattatctt tgatttcttt taaatcactt tgagttaaaa catattttac
    15541 aacaatagca cctattagca aaataaaaac aaacagcaat cctgccatta aatcagcata
    15601 agctatccaa aaattgctat cttcttttga ctcatttttc atttattttc tttatcttca
    15661 ttttttagct catcattgct ttcttgctta gatatttctg cttgaatttc atcttgattt
    15721 tcttcagtct tagactctga aaaatcttct atttgtttgg tttcattttc tttattctga
    15781 ttttcatccc cagaaagctt gctcatcatt tgacttgttt cttcatcaag tgctttcatt
    15841 tcttttttaa gctcatccat cattttgatt ttagcatcaa tacttttttc ttcttcatat
    15901 acttctttaa atttatgcat accttcaaac aagcttgctt taaatccctc aaaaaccttt
    15961 tcttgacttt ccaacattgc tttttcataa agttcaaaat ttttaccaaa acgctctatt
    16021 ttttcatcga atgcacttag tgtcttatca agatgatgaa ttttatcact actgatatca
    16081 agcaagcgat tatattgttc tgacattctt gtattgattt cttttaaatt ttgattgagc
    16141 aaacctatac catttaacat ttcactataa agctttccaa gatcgcgttg atctctttgt
    16201 gctttactaa gctcacccat ggtttgtttg atatgttcac tacttaatct aatagccttt
    16261 tcttctacat ttagcatatc ttggaaaata ccaaactttc tatcaatagc atgatcaagc
    16321 tctgcaaaaa aatcatcatt actaacttgt ttaaaaattg ctccaatttt ttcaaaatgt
    16381 tgcaaacttt cagttaaata tctttgatca agctcttctt ttgtccaaaa aaatccactt
    16441 gtagcgtttt tttgacgatt tagcaaacga tctattttgc ttttaccata tttttcaaaa
    16501 aacatccacc ataatgcaag aaaaattcca taaattgaaa cataaaaagc agttcccact
    16561 ccacttaaca aatctgcaat ttcttgttct aaagcggctg tatcactaga actaaaattt
    16621 ggcattgaaa aagctatact gataaaagtt cctaaaattc ccatcattgg aaaaattgcc
    16681 gaacctatac tagcaaaatt ctcatttctt gcacccttaa tatatgtata agcaaagtca
    16741 tcaaaattgg catttgattt cgtgtctttc cctatggcaa gaaaatgcct cataatatgt
    16801 ctttttaaag cctgtttaaa ttcatctttt tgttgttcaa aaatactata cgcatactca
    16861 gcactatgtc tagcaaaaat caatgctgta aaaaaaatca cacctgtcat aataaccgta
    16921 tgtaattcga ccttaaagtc aattacatta aaataaccca ataaaatcaa aatataaaga
    16981 aaagctggaa taaaaataat tttaaaataa accaaagaac ctcttgcatc tttgccttca
    17041 ggcaaaacaa gttctgaaat ttcatctgat ttaatatcca tgaaaccaat acctcattaa
    17101 aaattttatt ttaaagattg ctacttaatt tgataaaaat ttttaaaaca aaataaaact
    17161 aagcttttaa aatgcttagt ttttgtttat acagtttaaa tcttcaaaag cgatttcaag
    17221 acgttttatc atgctttctt caccgcttct taaccaaaca cgcggatcat agtatttttt
    17281 atttggcttg tcatcacctt ctggatttcc aatttgtcct tgcaaataag ccctattttt
    17341 aagttcatat tcacgcaccc catcccaaaa agcccattga gtatctgtgt caatattcat
    17401 cttaattacg ccatagctta ctgcattttt aatatctttt agctcactac cgctaccgcc
    17461 atgaaataca aaatttatag gcttatcgct atttaaagca aatttatctt ttacaaattt
    17521 ttgcgaattt tttaaaattt caggttgcaa gctaacattt cctggcttgt aaactccatg
    17581 tacatttcca aagcttgctg cgattgaaaa tttatcacta atttttccaa gtctttcata
    17641 tgcaagagct acatcttctg gttgggtata aagcttggaa ttatcaatac ctgtattatc
    17701 cactccatct tcttcgccac ctgtacaacc taattctatt tcaagcgcga cacctaaagc
    17761 atcaagtttt tgaagataaa cttcacaagt gctaagattt tcttctaaac tttcttcgct
    17821 aagatcaagc atatgagaac taaataaagc ttgtccatgg gtttttttat attgtgcatt
    17881 tgcctcaata agcccatcaa tccaaggcaa aagttttctt gcagcatgat cagtgtgtaa
    17941 aatcacaggc acaccataag ctttagcaag taaatgtaca tgtttagccc cactaattgc
    18001 acccaaaact tctccattag gacaattttt ccctgcataa aattttgccc caccatttga
    18061 aaactggata ataactggag aattaacttt ttttgcagct tctaaaactg cattaataga
    18121 atcagttcct acaacattaa cagcagggat agcaaaaccc tctgctttag catagtcata
    18181 aattttatta agctcatctc cgctaatcac ccctgctttt acaatgtcta aaacacccat
    18241 tatttatatt ccactttagc actatttaag agatcttggc ctttttgatt gataactttt
    18301 ttaaattctt caaatttaag tccgttttca ataccttgtt ttacttcatc aaatttgatt
    18361 tgacctttag cttgcgaatt ttcttttaag attacatgat aaccaaaatt cgtttttacc
    18421 ggagttgtag taatagtacc atttttaagc gcgaaagcag catctgtaaa aggctttacc
    18481 atagttgatt gatcaaacca accaagctca ccaccttggt tttttgaacc tggatcaatt
    18541 gatttctctt tagcaagctc gctaaattta gcatctagtt ctttaccttt taaaccttta
    18601 agttcgttaa taatatcctt agcttctttt tctgtcgcta ctaagatatg ttttgcttgc
    18661 actcttgcag gttttacata tttgtcttta ttttgatcat aaaaagcttt aactttagcc
    18721 gcatcaattt taatagtatt taaaattttc tcttgataaa cattaacaag tattgcatct
    18781 tttgcacgat caagttcttt tgtgtataaa gggtcttttt ctaaattttg ttttttagca
    18841 tcttgcaaaa ttaaatcttg cataatatat tgctgaataa gagctttttt ttgattatct
    18901 ggcaaagttt taaaatcctg tcctctaagc ataggggcaa aaaattcact tacttctgta
    18961 tcgctaatgc tcttgccatt aacagtagct actgtagctg catttacatt taaaactaca
    19021 cctgcaatca aagttgctgc gactaaagaa aattttttca ttaggtttcc tttttaataa
    19081 aatgtatata aaatcaatta tatctaaact tggtttaaag ctaattaact aaaattaaaa
    19141 aatgaaaaga aatttagaaa tcaaagaact ttttttaaaa cattttgaca agcctgtaac
    19201 agagcttaaa ttttcaaatt tatatgagct tttagtctgc gtaatgcttt cagcccaatg
    19261 cactgataaa agagttaatc tcatcactcc tgatcttttt aaagcttatc ctgatattaa
    19321 atcccttgca aatgcaaatt tatcaagtct taaaacctat atacaaactt gttcattttt
    19381 taataataaa gcacaaaatc ttataaaaat ggcaaaagca gtttgtgaaa attttgacgg
    19441 agaaattcct cttgatgaac aaaatttaaa atccttagca ggcgtaggac aaaaaaccgc
    19501 tcatgtagtt ttaatagaat ggtgcggagc aaatttcatg gctgtagata ctcatgtttt
    19561 tagagtttct caccgcttag gacttagcaa agcaaaaact ccagaagcta cagaagaaga
    19621 tttaacacgc acatttaaag ataatcttaa ctatcttcat caagccatgg ttctttttgg
    19681 acgttacacc tgtaaagcta aaaaaccttt atgtaaagaa tgctttttaa atcatctttg
    19741 caaaagtaaa gataaggaac ttaaatgaaa attttcatct ttttactcac tatatctctt
    19801 aatatttttg ccttagaacc ttacaagcct agtgctgatt tttcttctta ttttaacaat
    19861 ataaattgct cgcaaatctt agataagttt ttttatctaa attgctatga ttataaactc
    19921 aaaggcacaa aagctgttgc ttataaggta gaagcttcaa atttgaaaga tagacaaatc
    19981 aaaaaacgcc ctcgctttga agatgataca aatattccta aaaaataccg cactacttgg
    20041 agtaattata aaaacagtgg ttacacacga ggacacactg cacccaatgc ttcttttagc
    20101 tttagtaaag ctgctcaaaa ttcagtattt ttaatgagta atattacccc acaaaatgca
    20161 caaataaata ataaaatttg gaatgaaatc gaacaaagag aaagaaattt agctttagaa
    20221 tttcaaagta tcgaagtttt aaatttagta ctttacgata aagaaccaca atacattaaa
    20281 aaccgtattg ctataccaag tttttatgtg aaaattatta aaactccgaa atttaaagaa
    20341 tgctatcaag caccaaacca cgaagtaaat gatgaaaata ttaaacagta tcaaataaat
    20401 tgtgataaat tttaaggtat aaattatgga gataaatgct cttacgataa ccactcttta
    20461 tatcataggt atttccgcag aaggaatgac aggagcttta gctgcaggac gccacaaaat
    20521 ggatcttttt ggagttattt ttattgctct cgtaacagca attggaggcg gaagcatacg
    20581 agatgtgctt ttaggacatt atcctttaac ttgggttaaa catcctgaat atattatttt
    20641 aatctgtttt tgcgcccttg tagccacaaa aattccgcgc gtagtaacca aacttgaaac
    20701 tttatttcta actcttgatg ctataggact tgttgttttt agcatacttg gagctcaaat
    20761 agctatagat caaaaccatg gctttatcat agccgttgct gccgctgtaa ttaccggtgt
    20821 ttttggtgga attttaagag atattttatg tatgagaatc cccttggtgt ttcaaaaaga
    20881 aatttatgca ggaattgcca taattgcagg agcaatctat tattctctaa taatttggct
    20941 tgagcttaat gccctagttt gcacactttt aactcttttt ataggagttt ttgcaaggct
    21001 tttagctatc aaatatcaat ggtctttacc tattttttct tacaatgaag aaaaataatt
    21061 tatcgttgct ttatacaagt ttgctaagat attaaaaatt ttaggagatt gataaatgcg
    21121 aagactaagt attttacttg caattttaat agttattaat ataacagctt gtgatagtaa
    21181 aacagaaaat tactacaaaa atcttcctag cgaagcaaaa gaaaaagcga aagaatgcaa
    21241 agaaagcgga actcttagcg aagattgtat taatgcatta aaagttggtg ttaaaccaac
    21301 aaatgaagag ggtaaataca gtccaaacac accgaaaaaa tctgataatc aaatattaga
    21361 agctttaaaa caaaatgatt taaaaaaaga aaaaaccaca aaagatatta accaaagttc
    21421 agaaaataat gaaagtatta taataccacc tatagcagaa acaccttctg aaatttatcc
    21481 ttccaaaaca acagaaaaca atcaaagttc tatctttagc gatgatgtta atatgacaca
    21541 ggaaaaatga ccatgaaaat aactcttttt ttaagcctta ttggtatatt ttttgcagca
    21601 tgcgaacaaa ccaaaagtgt agaatattat caaaatcacc ccgaggaagc aaaaaaaaga
    21661 agtttagaat gcagacacaa agctatcatt agtcaagatt gtgttaatgc atataagata
    21721 ggttttccaa aagatgaatg ggaagatgaa aatatttcta atccttaaaa gctatgaaag
    21781 tttcaaaatt tgcccattta aaaatacttt ctattttctt aaaacctgcc ttttctagca
    21841 tatttaaatt ttctttttga ctataaggaa ttaaaacatt ttccaaagct tctcttttag
    21901 ctgcgatttc aaacttagaa tagccttgtt tttctttata atcagcataa agttctatga
    21961 tatttttaga caaaaaagca tcttcataaa ggattttttc actcataatc aaaatgcctt
    22021 tagagtttaa atttttataa atttgatcaa gcaattcttg tcttttagga ggacgaataa
    22081 actgcatggt ataatttgct acaaaaacat cgcaagtaaa aaaatcaaat tcgcataaat
    22141 tagcttcaaa aaaacttata tcaagcccat aagctttagc ttttgatttt gcaacttcaa
    22201 gcatggaagc agaattatcc acgccaaaaa gtttaaaatc ctttcttaga tttgccaaaa
    22261 aaatcaaaaa attagcactt gagcagccca aatcgcaaac acttgcattt gtaggtaaaa
    22321 ttttagccaa taaattgcca caaagttcta aattttctct ataaaatggt acagaacgat
    22381 tgatcatatc atcaaaaaca ctagccacgc ttttatcaaa ttcaaattgt tttttagggc
    22441 tttgtttaaa aagttcatct ttcatcattt ttccttaata attctctagc ttgctctatg
    22501 tctttagcaa tttgattttt aagttttttt agatcttgaa atttttgatt ctctcttaga
    22561 aaagatataa actcgagttc aaaaaactct ccttgcgtga aattttcacc caattcttct
    22621 aaaatatgac tttctatagc aaaattttca tcgcttgatc ttacacctaa aaaactcaca
    22681 cttttataag tttttctttg actttttaac aaagtaacat aaacaccatt ttgaggtaaa
    22741 aaataacctt cacaatctaa atttatagtc gcaaaaagtt ctttagagcc caaaccttgt
    22801 cctttaatca tcttcccttt gatactataa tctcttccta aaaattcttt tgctttttgc
    22861 aaatttgctt ttgataaaaa atccttaatt aaacttgcat gaacacctat tccgtctatg
    22921 ctaaattcat caactattat agtttttatc ccacttaaag actcaatatc tttagcatta
    22981 taagctctat ttttcccaaa agaaaaatca tatcccacca ctataaattt taaattgaca
    23041 aattcttttt tcaaaaagct taaaaaatct ctaccatcta aagattttat actttcaaaa
    23101 tccacttcta taactttttt tcctgaaatt tcttcttttt gacgatttga acaaagaaat
    23161 tgacccttaa atttattaat aactaataaa gccccattct catctaaaca ttttacaagt
    23221 tttagatgtc ctaaatgcat accatcaaaa caacctatgg ctaaagaggt aatattaatt
    23281 tttgatatag tagtaaaaat attcaacatt accttccttt cctttaatgc ttgatttttg
    23341 cgtatttttt aaaagccaac ccaatttagc acatgctttt tcaaaatcca ttcttgcctt
    23401 taagattgcc ttatcatctt ttaaaacacc ttttttatct cttttgatat tttttcccac
    23461 ttcaaactga ggtttaaaaa gtaaaataat ttcctttaaa gctaaattat caatataata
    23521 aagtaaatta ataagagaaa taaaactcac atcacaagta acaagttcaa atttttcttc
    23581 acttttaaag gctctaagat ctgtattttc atgcaagata attttttcat ttactcttaa
    23641 acttggatgg agttgattac tacccacatc aagagcagtg atttttaaag cctgattttc
    23701 aagtaaaatt tgaacaaaac cgcccgtact agatcctata tcaagacaat ttttatgttt
    23761 tatttcaata tcattttctt ctaaaaattt ttttaatttc aaagctgctc ttgaaacata
    23821 aatttcactt aaaagatcca attttaactc attggctaaa agtatatctt caggatttaa
    23881 atcttgcgtt ttttttaaat tttctaaaaa atttttcaca tcaaaagaag ctttaaaact
    23941 cttaccatta agtaaaatct cttcattttc tataagctct aaggctttat ttctactgat
    24001 atttaaacgc tttgaaacaa aaaaatcaaa tctcatttta aactctcatt tattcttttt
    24061 tctaagtctt ctttttcttt agaaaaccac caaataccta tttcaaaagc atttttttta
    24121 aaaatttctc taagatcttt aagatctttt tcaaaaagat ctttttcttt ttgaattaaa
//
LOCUS       DAPIWQ010000006        23531 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.006, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000006 DAPIWQ010000000
VERSION     DAPIWQ010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 23531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23531
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.006"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..951
                     /gene="kpsS"
                     /locus_tag="RJ267_000183"
     CDS             <1..951
                     /gene="kpsS"
                     /locus_tag="RJ267_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HDV7388073.1"
                     /translation="KIDAILMYNDCRIIHTKAIKVAKELGIEIWIFEEGYLRPYCITL
                     EKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFN
                     NKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIK
                     YHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGR
                     VLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQF
                     FWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK"
     gene            1024..2145
                     /locus_tag="RJ267_000184"
     CDS             1024..2145
                     /locus_tag="RJ267_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HDV7388074.1"
                     /translation="MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKVDLSKIE
                     KNEQFPFFQISCEGVQTTYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIK
                     FGKESIYQLITGYYPFFYVLFSLLFSLVVAFGSFAFLQNYMHFSLAIIIGCFLGFLLN
                     HFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYE
                     LVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKL
                     EFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKI
                     KRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI"
     gene            2142..3503
                     /locus_tag="RJ267_000185"
     CDS             2142..3503
                     /locus_tag="RJ267_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HDV7388075.1"
                     /translation="MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMS
                     SKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRAKAGDVIRQVLS
                     DIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSL
                     TWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFF
                     AREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPF
                     GVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSK
                     RKL"
     gene            3500..3919
                     /locus_tag="RJ267_000186"
     CDS             3500..3919
                     /locus_tag="RJ267_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388076.1"
                     /translation="MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLG
                     YLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVI
                     KITDFFQKDHCKRANKREQPVVDFIISRNLDKQTIGK"
     gene            complement(3920..4267)
                     /locus_tag="RJ267_000187"
     CDS             complement(3920..4267)
                     /locus_tag="RJ267_000187"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HDV7388077.1"
                     /translation="MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLA
                     GLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSIS
                     HDNGFAIAIVAIV"
     gene            complement(4267..4803)
                     /gene="fliL"
                     /locus_tag="RJ267_000188"
     CDS             complement(4267..4803)
                     /gene="fliL"
                     /locus_tag="RJ267_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HDV7388078.1"
                     /translation="MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKEAPKEEAKADKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            4925..6295
                     /gene="pgmL"
                     /locus_tag="RJ267_000189"
     CDS             4925..6295
                     /gene="pgmL"
                     /locus_tag="RJ267_000189"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase PgmL"
                     /protein_id="HDV7388079.1"
                     /translation="MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVS
                     VGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSH
                     NPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILSLYVKFMCE
                     QFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAKPDGQFPNHAPDPTEEE
                     NLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTYVFCGDELCYLFAKNIPNPRILGE
                     VKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDG
                     IYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGAL
                     KGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESTVFSLFNEI
                     KARLKN"
     gene            6343..6720
                     /locus_tag="RJ267_000190"
     CDS             6343..6720
                     /locus_tag="RJ267_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 family protein"
                     /protein_id="HDV7388080.1"
                     /translation="MKKILVLLLLCAFAFGASECDRKIDRINKEISFSKAHNDTARTL
                     SLELALKQVQNDCAKDPMFYDKKLEAKKLKEQEVEKIEKELDALKEQKDYMSKAEYKA
                     KKEALKEQKEKIKKEIKEYIDNL"
     gene            complement(6751..7077)
                     /gene="rsfS"
                     /locus_tag="RJ267_000191"
     CDS             complement(6751..7077)
                     /gene="rsfS"
                     /locus_tag="RJ267_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HDV7388081.1"
                     /translation="MQERIDLIVKILDEKKAEDIKTIDMSEQEYFVKYVIIAATLGER
                     HALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLEN
                     LKKGRV"
     gene            complement(7105..7650)
                     /gene="nadD"
                     /locus_tag="RJ267_000192"
     CDS             complement(7105..7650)
                     /gene="nadD"
                     /locus_tag="RJ267_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HDV7388082.1"
                     /translation="MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFK
                     QSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLL
                     IGADHLEKLHLWHDFEKLNSLVEFVIANRNDIEIPKNFKDLKTDKKIASSFIRNTLNT
                     NEVCEEIKDEVKKYYEKLQKN"
     gene            7710..8708
                     /gene="gap"
                     /locus_tag="RJ267_000193"
     CDS             7710..8708
                     /gene="gap"
                     /locus_tag="RJ267_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HDV7388083.1"
                     /translation="MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYL
                     FKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLT
                     MAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDD
                     ERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA"
     gene            8711..9913
                     /locus_tag="RJ267_000194"
     CDS             8711..9913
                     /locus_tag="RJ267_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HDV7388084.1"
                     /translation="MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKT
                     KAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAI
                     TKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     ALRSKENE"
     gene            9910..10581
                     /locus_tag="RJ267_000195"
     CDS             9910..10581
                     /locus_tag="RJ267_000195"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HDV7388085.1"
                     /translation="MIFAANLKCNHTRASFKIYAKILNKTMGVKCDDIIVFPPSIAFL
                     ENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKF
                     DFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGV
                     SAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFI
                     KLIKG"
     gene            10585..11409
                     /gene="fabI"
                     /locus_tag="RJ267_000196"
     CDS             10585..11409
                     /gene="fabI"
                     /locus_tag="RJ267_000196"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HDV7388086.1"
                     /translation="MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALK
                     KRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENS
                     FLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVA
                     KAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNV
                     SIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG"
     gene            11413..12906
                     /locus_tag="RJ267_000197"
     CDS             11413..12906
                     /locus_tag="RJ267_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HDV7388087.1"
                     /translation="MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLS
                     LGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHE
                     TLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFAL
                     FGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEE
                     LKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYAFIEQ
                     NFDENPMPSKDFWKYLEISFILVKGAFLKDKNDFLIVAKNYAFKHASPYDFKLNMNAE
                     KPKLDVSKSFRMTLIYLCGGLDFEGVAYSILKAFEDNIAKISSLKAS"
     gene            complement(12903..14744)
                     /gene="feoB"
                     /locus_tag="RJ267_000198"
     CDS             complement(12903..14744)
                     /gene="feoB"
                     /locus_tag="RJ267_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HDV7388088.1"
                     /translation="MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAK
                     TFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSA
                     ELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKII
                     ILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIH
                     KFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALADGI
                     IAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGF
                     GCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGI
                     YILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAG
                     TFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFQPLELDWKL
                     SVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIY
                     NPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN"
     gene            complement(14741..14965)
                     /locus_tag="RJ267_000199"
     CDS             complement(14741..14965)
                     /locus_tag="RJ267_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HDV7388089.1"
                     /translation="MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSS
                     LKNATIMVELDTSCVILRSDEAKTIEVNLI"
     gene            complement(15047..16387)
                     /locus_tag="RJ267_000200"
                     /pseudo
     CDS             complement(15047..16387)
                     /locus_tag="RJ267_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
     gene            complement(16396..17763)
                     /locus_tag="RJ267_000201"
     CDS             complement(16396..17763)
                     /locus_tag="RJ267_000201"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDV7388090.1"
                     /translation="MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFRVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELDRHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLEVPNISWQSTRDRFIELGFVLGNINATFNKIAHQLLILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLDTLKGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEQQKTFKEVLLADTRVSQVLKEKDIDALLDATSYVGYAPKLVDEFLAKIKN
                     SAILK"
     gene            complement(17773..18935)
                     /locus_tag="RJ267_000202"
                     /pseudo
     CDS             complement(17773..18935)
                     /locus_tag="RJ267_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
     gene            complement(18948..20387)
                     /gene="dcuC"
                     /locus_tag="RJ267_000203"
                     /pseudo
     CDS             complement(18948..20387)
                     /gene="dcuC"
                     /locus_tag="RJ267_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
     gene            complement(20391..20753)
                     /locus_tag="RJ267_000204"
     CDS             complement(20391..20753)
                     /locus_tag="RJ267_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDV7388091.1"
                     /translation="MSNYPKAIGPYSAYREVNGLLFISGQLPINPASGEIESSDIKEQ
                     TKQSLKNIGAILEENGISYDKVIKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDLPKKAKVEIEIIAQKG"
     gene            20921..21577
                     /locus_tag="RJ267_000205"
     CDS             20921..21577
                     /locus_tag="RJ267_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDV7388092.1"
                     /translation="MDEGQKQQFIKLTYFLGEVLGEQYEIVFHVITEDGAYIAAIANS
                     HISGRSLDSPLTAFASELMQNKKYLEKDFLCDYKALVGKSKLIRGSTFFIKNHDKLVG
                     ILCINHDTSIMRDLICKMIDLEKIGDMGDILGNISFSQNDSSIETLSHSIEDILVQSV
                     DSSYLNSDYQLSITQKEEIAEKLYEKGIFNIKGAVPIVAKFLKISEPSVYRYLKKFKK
                     "
     gene            complement(21578..22048)
                     /locus_tag="RJ267_000206"
     CDS             complement(21578..22048)
                     /locus_tag="RJ267_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HDV7388093.1"
                     /translation="MTTLSLEEEKRFEELCKMAFNFARNNECENLKIMIEAGLNVNLK
                     THKGDSLLMLAAYNNSYESAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYTFAIMFGRKDVAEFLLKKSKNNFLKKISLKILKFIKKF"
     gene            complement(22105..23529)
                     /locus_tag="RJ267_000207"
     CDS             complement(22105..23529)
                     /locus_tag="RJ267_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HDV7388094.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGAKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSGAYGEIKITADLSAYTKAKIFQKGEVTPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTQQGI
                     KNLTNQEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDIEKLGFNPFDLT
                     KIWPHSFVPLMDIGEMILNKNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDK
                     SYLEPDLVLEGVAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIAASMEGVDEKII
                     TRALKHFEKISPDYAKGIKKALEK"
BASE COUNT         7918 a         3424 c         4040 g         8149 t
ORIGIN      
        1 aaaatcgatg ctattttaat gtataatgac tgtcgcatta tacatactaa ggctattaaa
       61 gtggctaaag aattaggaat tgaaatatgg atttttgaag aaggatattt aaggccttat
      121 tgtattactt tggaaaaaga tggagtgaat gcaaattctt ctttaccgcg tgataaaaat
      181 ttttatcttt ctcaaaatat ttttaccaaa gaaagcataa aagaaattcc aggtggattt
      241 aaatttatgg cttttgatgc ttttttgtat tggttgtttg cttttatttt ggctccattt
      301 tttaacaaca aacttcatca tcgcacttta tatccttttg aatttttatt ttggtttaga
      361 tcattgtata gaaagtatct ttataagatt acagaaaaaa aactaaatga aaagatttat
      421 aatttagaaa aaaagtactt tttggcgatt ttacaagttt atagcgatac gcaaattaaa
      481 tatcattaca aaaaaagcat agagcacttt atagaggaaa ccatactttc ttttgcaaac
      541 catgcaagag ctaaatctta tctagttttt aaacaccatc ccatggatag gggctataag
      601 aattattcta aactcataaa tgatttaagt caaaaatatc atgtagaagg aagggtttta
      661 tatgttcatg atacccactt gccagttctt ttaagaaagg ctttgggttg tattactata
      721 aattcaacag taggccttag tgctatttta gaaggctgtc cgactaaggt ttgtggcaat
      781 gctttttatg attttgaagg cttatcttat ccaaaaaaac ttcaattttt ttggcgtgaa
      841 gctcatgctt ataaacccaa tcctgtttta gtatgtaatt ttaaaaaata tcttttacaa
      901 actaatcaat tcaacggcaa tttttataaa aatttctttt tagacaaata agactaaaaa
      961 gctttgatta agagagcttt taaagcaaag ttgttataat taaaagcaaa aagaaattat
     1021 tgtatggata gggaagtatt ttatatagca ggatatgatc ctaaaagtta tagattttat
     1081 tatgatttat ttaaaaaaaa cctaaaagat tattctcatg cttttaacat taaagttgat
     1141 ttaagtaaaa ttgaaaaaaa tgagcaattt cctttttttc aaatttcttg cgaaggagta
     1201 caaactacat atcatttttt aacatggaat gatattgtta agaaaaattg gtcagaaaat
     1261 tataaagatg ctttggcaga ttgttatagt ttttttagaa tttatactat cacagggctt
     1321 tttatcaaat ttggcaaaga gtcgatttat caacttatca caggttatta tccttttttt
     1381 tatgtgttat tttctttact attttctttg gttgtggctt ttggaagttt tgcttttttg
     1441 caaaattata tgcatttttc tttagctatc atcataggat gttttttagg atttttacta
     1501 aatcattttt tatttaaatt aggtaagaaa ttagctgtat tttggatagc aagaatttgt
     1561 gctttttgtg ctacttggca agataaaaaa acaggcacta tgcaagaaag aatcaagctt
     1621 tttgcgaata ccatagtaga taagttaaaa caaaatgaaa ataaacaaga ttatgaactt
     1681 gttttagtag cacatagtgt tggaactata gtttgtatag aagttttgga gtgtatttta
     1741 agacaaaatt tagatttatc tttacttcat aagttaaaaa ttcttactct aggagaatgc
     1801 attcctttag tgagttatca aaaaaaagcg gatgaattta gaaagaagct tgaatttgtt
     1861 tcaaggtttg atttaaaatg gtatgattat acatcgatta ttgatggagc atgttttcct
     1921 caagtggatt ttttccgcac gagtggcgta aatgctaaat ttacaccccc atttttaagt
     1981 gctaaatttc acactttata tgaaaaacat gagtataaaa aaataaaaag agataaaaac
     2041 aaagcgcact ttttatatct ttatagtatt agtgttaaag gtgattatga ttttttttct
     2101 ttcatcataa tgcctaaatt tttagaagaa aaggtaaaaa tatgagtgaa tgcccctttt
     2161 ttccaaaacc ttataaaaat aaagcttcta cgcttttaac ttttttgtta aagcgtagat
     2221 cttggcttga cgggctttat gagcgtagtt ataaaatgca aacaggctat gtgaagatgc
     2281 caaattttga tctttatgtc ataaatgaca ctaaagaagt taaaagaatg atggttgatg
     2341 aggttagaga atttcctaaa agtgcatttt tacatgagct tttaagtccg cttttagggg
     2401 agagtatttt tactacaaat ggtgaagttt ggaaaaaaca aagagagctt ttgcgtccaa
     2461 gttttgaaat gactcgtatc aataaagtgt ttaatcttat gagtgaagct gtggcagata
     2521 tgatggatcg ttttagcaag tatccaaatc atgctgttat cgaagtagat gaagctatga
     2581 cttttattac cgctgatgtg atttttcgca ccattatgtc ttcaaaactc gatgaggaaa
     2641 aaggtaaaaa aatcttaaac gcatttgtga cttttcaaga gcaaagcgtg catacagcca
     2701 tgcgtcgtat gtttcgtttt ccaaaatggc tttcttatgt gttaggagat cgtaagcgtg
     2761 ctaaagccgg agatgtgatc agacaggttt taagtgatat cataaaacca agatatgata
     2821 tggcagataa tgcagaattt gaagatattt taggatcttt gcttttagta gtggatgctg
     2881 atacaaataa gcgtttttct tttgaggaaa ttttagatca agtggctatg ctttttttag
     2941 caggacatga aaccacagca agttctttga catggacgct ttatttgctc agtctttatc
     3001 ctaaggagca agaaaaagct tacgaggaga ttactcaggt tttacagggt ggagccattg
     3061 aaatttcgca tctaagacag tttaaatact taacaaatat ttttaaagaa tctttaagac
     3121 tttatcctcc tgttggtttt tttgcaagag aggcaaaaaa agatacccaa gttagagata
     3181 agcttattaa aaaaggttct ggggtggtga ttgctccttg gctgatacac agacatgaag
     3241 aattttggac aaatccgcat ggatttaatc cttctcgttt tgaaggagag tacaaaaaag
     3301 atgcttattt gccttttggg gtaggggaaa gaatttgtat aggacaaggt tttgctatgc
     3361 aagaagcgat tttgattttg gctaatattt taaaaactta caaactagaa cttgaagaag
     3421 gttttgtacc tgatgtagta gggcgtttaa cagtgcgttc ggctaatggt atgaggataa
     3481 aatttagcaa aagaaagcta tgaaaagagt tagaactaaa attcgcgcca attttcgtcg
     3541 tcgtgtaaaa cgcaccttaa aaggaagctt aaaagaaaaa ttagcaggta ctattttgct
     3601 ttgtgcaata gtacctttag cagttttagg atatcttttt atcgtgatta taggaacttt
     3661 ttttaatacc gcacgagcaa gacagggtgt tagagcctta gatcattttg taaatgcaag
     3721 cttgtttaat ggctatgctt gggagagcgt ttcttctcat gcgtggcgtg aaagaaatcg
     3781 taaaaaatgg gcaaggattg ttataaaaat cacagatttt tttcaaaaag atcattgtaa
     3841 aagagcaaat aaaagagaac aacctgtggt agatttcata atttcaagaa atttagacaa
     3901 gcaaactata ggaaaataat caaactatag ccactatggc tatagcaaaa ccattatcat
     3961 gagaaatgct tagggaagtt tgagtgatat taaaatcttt tgtaattttt tgagaatatt
     4021 ttaatttagg tgcgtttttt tcatcttttg atatttcaat atcaaaaaaa ctgcataatt
     4081 cacaaattcc aacacctaaa gccttgctag cggcttcttt agcagcccaa agacctgcta
     4141 gagttgctgg atttttaatg agtatttgtt cttttgggct tagaaattta tccaaaaaat
     4201 ttttgccatg tctagaatga attttttcta tcctagaaat ggcgatgata tcacagccta
     4261 cacgcattaa gaaactacaa aatccgtaaa ataaacattt ttaataaagc catcggttaa
     4321 aatttcattg atttttccaa ctagctcatc ttttaaacgt tctttgcctt tttgtgtact
     4381 tacttcttca aaagttttag ctgttaatgt acgaataata atatcacgaa tcaccgggac
     4441 ttttttatca agttcaggtt ttaaaagttc gctattttgt tctagttcta tagtgcattt
     4501 tacatatctt gagccactat cgctaagtag atttagggta aaaggatcaa gtggatacat
     4561 aggacctata ttagcaaaat cactacctcg ttgagtagga gctgaaactt taggtttatc
     4621 ggcttttgct tcttcttttg gagcttcttt gacttcgctt tcatcacttg aactgcttga
     4681 aataagccaa gcaatcactc ccataatact aagaagtaaa acaaaaagta aaataacaat
     4741 aataattaca agtgaaccac cttttttctt tttcgtttct tcgttttcta attcttcatc
     4801 cataaatttt ccttcattta gtgaaattaa tgtaaaattg tagcaaaaat ttcttttcta
     4861 tccaaatttg ctttagaaaa acgataaatt taggtcaaag aagagatgaa tttgaaggaa
     4921 aaaaatgtta gatgtgattt ttagagaata tgatataaga gggctttatg gcaaagaatt
     4981 aaatgaaaaa agtgttaagg ctataggttt ttgcttggga caaaccatgc taaataaagg
     5041 ctgtaaaaat gtaagtgtgg gctatgatgc aagatatagt gcaaatgaac tttttaatta
     5101 tctagtgagt ggacttaaca aagcgggaat aaaaatctat gatatagggc ttgtaccaac
     5161 tccattggga tattttagtc tttatgaggg cttgaaattt gatgcaaatg ttatgataac
     5221 aggctctcat aacccaaaag attataatgg ttttaaaatc actatcaata aagaaagttt
     5281 ttttggcgtg gaattaaaag agttttcaaa agaagtttat aagcatttag atgatgatat
     5341 tgaagaaaat ttagaagtag aaaaatacga tattttaagc ctttatgtga aatttatgtg
     5401 cgagcaattt agttttttaa aggattttaa ttataaattt ggtgttgatt gcacaaatgg
     5461 tgcggctgga gtggtgataa agcctttaat caaggcttta aatttaaaag ctcatgtaat
     5521 gtttgcaaag cctgatggac agtttccaaa ccatgctcca gatcctacag aagaagaaaa
     5581 cttaagtgcg attagagagt ttttaaatca aaatcaagat tattctttag cttttgcttt
     5641 tgatggggat gctgatagaa tggttgcttt gagtaaaact tatgtatttt gtggagatga
     5701 gctttgttat ttgtttgcta aaaatattcc taatccacgc attttaggtg aggtaaaatg
     5761 ttctaaaaat ctttttgatg aagtggctaa atttggaact atttttatgg gaaaaacagg
     5821 acattctaat atcaaaaaaa tgatgaaaga aaaagatatt gatttagctg ctgaagtgag
     5881 tggacatatt ttctttaaac atagatattt tggttatgat gatggaattt acgcattttt
     5941 aagagcctta gaacttgttt ataaaggttt tgatttagaa agtatgatta aagctttacc
     6001 aaaactttat actacacctg aaattaaaat tcctgtaaat gaagaagaaa aatttaaact
     6061 tgtggaagaa tttcaaaaag agattgaaaa aggagcttta aaaggtgtta aaagtctttg
     6121 tgaaattgat ggagctagga tagattttgg cgatggatgg gctttgcttc gtgcatctaa
     6181 caccagccct tatcttatca cacgctttga agcaacttct ttagaaagag caaaagagct
     6241 tgaaagtacg gtatttagtt tgtttaatga gataaaagct aggcttaaga attgatgaga
     6301 taatatttcg cgatttaaat ttattttaaa aaggaattaa aaatgaaaaa aatacttgtt
     6361 ctacttttgt tatgtgcgtt tgcttttggc gcaagtgaat gtgatagaaa aattgatcgt
     6421 atcaataaag aaatcagttt ttctaaagcg cataatgata cagctagaac tttaagctta
     6481 gagcttgctt taaaacaagt acaaaatgat tgtgctaaag atcctatgtt ttatgataaa
     6541 aagttagaag ctaaaaaact taaagaacaa gaagtagaaa aaatcgaaaa agaacttgat
     6601 gctttaaaag aacaaaaaga ttatatgagt aaggctgagt ataaagctaa aaaagaagct
     6661 ttaaaagaac aaaaagagaa aatcaaaaaa gaaattaaag aatatattga taatctctaa
     6721 aaattaaaag gctaattaaa tttagccttt ttaaacccta ccttttttaa gattttctag
     6781 taattcttct atattataaa ttcctctgtg ttctggtgtt aaaagatgga ttaaaatatc
     6841 accaagatca atcacactcc attcttcgct actatctatg tttaaaaatt cctcaccttt
     6901 ggctttaagt tgtgttttaa gctcatcgat caaggataga gcgtgtcttt ctcctaaagt
     6961 agctgcgata atgacatatt ttacaaagta ttcttgctcg ctcatgtcaa tggttttgat
     7021 atcttcagct tttttttcat ctaaaatttt aacgattaaa tctattcttt cttgcattat
     7081 tgtcctttaa tttttgaaat tgtatcaatt tttttgtaat ttttcataat atttttttac
     7141 ttcatcttta atttcttcgc aaacttcatt tgtatttaaa gtgttgcgta tgaaagaaga
     7201 agcgattttt ttatcggttt ttaaatcttt aaaattctta ggaatttcta tatcattgcg
     7261 attagcaata acaaattcta ctaaagaatt aagtttttca aaatcatgcc aaagatgaag
     7321 tttttctaaa tgatctgcgc caattaaaag ataaaattta ctaggattat aaagcttata
     7381 aagatactta acactttcta tgctaggaac agggcgtttt tgcctgattt caaaatcgca
     7441 aatttcaact tttggcaaat gtccccaaag ttttttaacc cataagaatc tttgcttttc
     7501 atcagcacta aaactttgtt taaaaggatt gatataagta ggcataataa taagtttatc
     7561 aatatctaat ttttccaaag cctctaaaac aacgctatta tgaccattat gcggtggatc
     7621 aaaactgcca ccaaaaagtg ctatcttcat taaaatttta accttttttt tgtagaatat
     7681 tagcattata ttttgcaaaa ggaaattaaa tggctgtaaa agttgctata aatggttttg
     7741 gacgcatagg cagatgtgtt gcaagaatca tcttagaaag aaatgatatt gagcttgtgg
     7801 cgataaatga tactacggat attgaactta caaaatacct ttttaaatac gatacagtac
     7861 atggtgaatt taaaggcagt gttgatagtg aaggagatga tttagtggta aatggtaaaa
     7921 aaatcaaagt atttaaaagt cgcaatgtaa aagatcttga ctttgcaaaa cacggcgcac
     7981 aaattgtttt agagtgcaca ggagcgcatt taactatggc aaaatgtcaa gaatttatag
     8041 atatgggagt acaaaaagtg atcatgagtg ctcctgcaaa agatgatact cctacttatg
     8101 ttttaggagt aaattcagaa ctttacaagg gtgaaagcat tatttctaat gcaagttgta
     8161 caacaaattg tttaggtcct gtttgtcgtg ttttacaaga taattttggc atagaaaaag
     8221 gacttatgac aacaatacat gcttatacaa atggacaaag tattattgat gctaaagcta
     8281 aagataaacg ccgttctcgt gctgcagcgc aaaatatcat tccaacttct acaggcgcag
     8341 caaaagctat gaaacttgtt atgcctgaac ttaatggcaa gcttcatgga caaagtatgc
     8401 gtgtgccagt gattgatgta tcaagcgtgg atttaactgc acaactaagc cgtaaagtta
     8461 gcaaagatga aatcaatgaa gctttcagaa aagctgcagc tacaaattta aaaggcattt
     8521 taatggtaga tgatgatgaa agagtttcaa gcgattttat cacttgttct tatggagcta
     8581 ttgtagcaag tgatttaact caagtgattg cggatgattt tatcaaggta attgcttggt
     8641 atgataatga atggggctat tcaagtcgtc tagtagatat ggcagtatat attgcaaata
     8701 aggcttaatc atgagtgata ttatttctat aaaagacatt gatttagcta agaaaaaagt
     8761 ttttataaga tgtgatttta atgttcctca agatgatttt ttaaatatca ctgatgatag
     8821 acgcataaga tcagctattc ctacgataag atattgtttg gataatggtt gtagtgtgat
     8881 tttagcctct catttagggc gtccaaaaga aattagctct aaatattctt tagaacctgt
     8941 ggctaagcgt cttgctagac ttttagataa agaaattgtt atggcaaaag atgttatcgg
     9001 cgaagatgca aaaaccaaag ctatgaattt aaaagcgggt gaaattttac ttcttgaaaa
     9061 tttgcgtttt gaaaaaggcg aaactaaaaa tgatgaaaat ttagccaaag aacttgcttc
     9121 tatggttcaa gtttatatca atgatgcttt tggagtatgc catagagcac attctagtgt
     9181 agaggcgatt actaaatttt ttgatgaaaa acacaaaggc gcaggatttt tactccaaaa
     9241 agaaattgat tttgcaagca atcttatcaa acatccagca cgtccttttg tcgctgttgt
     9301 tggaggttca aaggtaagtg gaaaacttca agcattgaca aatttattac caaaggtaga
     9361 taaattaatc ataggcggag gtatggcatt tactttttta aaagctttag gttatgatat
     9421 aggaaattca cttttagaag aagaactttt agaagaagct aataaaattc ttaccaaggg
     9481 taaaaattta ggagtgaaaa tttatcttcc agtagatgtt gtagccgctc ctgcgtgctc
     9541 acaagatgcg ccgatgaaat ttgttccagc gcaagaaatt ccaaatggtt ggatgggttt
     9601 agatatagga cctgcgagtg tgagactttt taaggaggtg atttctgatg cgcaaacgat
     9661 ttggtggaat ggacctatgg gtgtttttga aattgataaa ttttcaaaag gtagcattaa
     9721 aatgagtcat tatatcagcg aaggacatgc aacttctgtt gttggaggcg gtgatacggc
     9781 tgatgtggtt gcgcgtgcag gtgatgcaga tgaaatgact tttatttcta ctggaggtgg
     9841 tgcttctctt gaacttatag aaggcaaaga acttccaggt gtaaaagctt taagatctaa
     9901 ggaaaatgaa tgatctttgc tgcaaattta aaatgcaatc acacaagagc aagctttaaa
     9961 atttatgcta aaattttaaa taaaactatg ggggtaaaat gcgatgatat tatcgttttt
    10021 ccacctagta tagcattttt agaaaatgaa aataacttca tacaaggagc gcaaaatttt
    10081 tatccttgtg ttaatggtgc ttttacaggc gagcttggaa aagaacattt ggacgaattt
    10141 gggattaaat gtgtcttaat cgggcattct gaaagaagag ctttaggaga tgaagaattt
    10201 attaaggcta aatttgattt tgctaaagag catggttata aaattgtttt ttgtataggt
    10261 gaaaatttag atacaaaaaa ttcaggcaag actttagagt ttttaaaaaa acaacttgaa
    10321 attattgatt taaattatga aaaactcatc atcgcttatg agcctattta ttctatagga
    10381 acgggagtga gcgcacaaag tacagatatc gctaaagtgc ttgaattttt agcgagttta
    10441 accaaagtac ctttgcttta tggtggaagt gtgaatgaaa ataatatcaa agaaatttta
    10501 agtgtaaatc attgtggtgg agttttgata ggctctgcag ctttaaaagt agaaaatttt
    10561 ataaaattaa tcaaaggata aaagatgatt atgaagggta aaaaaggcct tattgtaggg
    10621 gttgcaaata ataaatctat tgcttatggc atagcaaaag catgttttga tcaaggagcc
    10681 gagcttgctt ttactttttt aaatgatgct ttaaaaaaac gcgtagaacc tatagcacaa
    10741 gagtttaatt ctaattttgt ttatgagctt gatgtaaata ataacgagca tttagattct
    10801 atcgctgaaa aaatcaaaaa agatttaggc gagattgatt ttgtagtgca tgcggttgct
    10861 tttgctccaa aagaagcttt agaaaattct tttttagaaa cttcaaaaga agcttttgat
    10921 atagctatgc aaacttctgt gtattcttta ctttctttaa cacgtgcggt tttacctatt
    10981 ttaaaagata agggttcgat tttgacttta agttatcttg gtggggttaa atatgtacct
    11041 cattataatg ttatgggtgt agcaaaagcc gcacttgaaa gttctgtgcg ttatttagca
    11101 agagatctag gagtaaaagg aattcgtgtt aatgctattt cagcaggtcc tattaaaact
    11161 ttggcagcaa gtggaatagg ggattttaga atgattttaa aatacaatga aatcaattct
    11221 cctttaaaac gcaatgttag tatagaagat gtaggtaatt cggctatgta tttacttagc
    11281 gatttagcaa atggtgttac aggtgaaata cattatgttg atgcaggata taacatcatg
    11341 ggtatgggcg atgttgaaaa aaatgaagaa gggcaaactg ttctttgttg ggataatcaa
    11401 aaaggataaa aaatggcaaa gcttagcaat gaagaattaa aaaatatact tgaagatcgc
    11461 attaaaaaac ttgagaattc tactttaaaa gaggacaagg ttatcaatga agaaagtgta
    11521 aaaattcttg ctaggcattt atctttaggc aatgaaattc cagctcttgc tcaaagattt
    11581 tttcaaatcg cacctaaaac aaagttagta tggcttcatc tttgtgaatg tacagggtgt
    11641 agcgagagtt tgttgcgttc tgagttgcca agttttgatg agcttatttt tgattttttt
    11701 tctttagaat atcatgaaac tttaatggcg gcaaatggca ctaaggctga agagctttta
    11761 gagtatgttt tagaagaaga ttttatttta gcggttgaag gtggtgttgc agccattgat
    11821 accttttttc ttactatagg agcgcaagga gagagtggct atgaaatttt agaaaaacta
    11881 gccgctaaag ccaaggctat ctttgcagtg ggtacttgtt caagttatgg tggtattcag
    11941 gctgcttatc caaatcctag taaaacttgt ggtattagcg aagttttaag tcagaaagta
    12001 gtaaatattc caggttgtcc tccaagtgat ataaatatca ttgcgacttt aagttttttt
    12061 gctttatttg gagttttgcc tgaacttgat gagcaaaatc gtcctgtgtg ggcttatggt
    12121 aaatgtttgc atgatatgtg tgaaagaaag gcgaaatttg aaagcgggat ttttgctgaa
    12181 cattttgacg atgaagctgc aaagaatgga gcttgtttat ttaagatagg ttgtaaagga
    12241 ccttatactt acaacaactg tcctaaagtg aaatttaatg ctaaaacttc ttggccagtg
    12301 gctgcaggac atggttgtat agcctgtagt gagaaaaatt tttgggatga gtttgggaat
    12361 tatgaaaaac ctatggcaaa tattttttct tacgctaaac tttgcaatga agagttaaaa
    12421 caagaatttt ttctagaaga gcaaattaaa attttagaac aaatagattt tgaatttgaa
    12481 agcaatataa aacttatttt acaaaatata gctaaaaata aattaggtgc tttgcttgta
    12541 gaaaattata aaaaatcttt tgaaaaaaac tatgctttta tagaacaaaa ttttgatgaa
    12601 aatcctatgc cttcaaaaga tttttggaaa tatcttgaga taagctttat tttagttaaa
    12661 ggcgcatttt taaaagataa gaatgatttt ttaattgtgg caaaaaatta cgcttttaaa
    12721 catgcaagtc cttatgattt taagttaaat atgaacgctg aaaaaccaaa gcttgatgtg
    12781 agtaaatctt ttcgtatgac tttaatctat ctttgcggtg gacttgattt tgaaggtgtt
    12841 gcttatagca ttttaaaagc ttttgaagat aatatcgcta aaatttcatc attaaaagca
    12901 agttaattta ataaaatttt agcaatatga agtcctataa aagctactat ataagcactt
    12961 gtacaggtaa aaagaaatag aaagagagtg tattttagct ttccactttc ttttgaaaaa
    13021 actatagttg ctgcaaagca aggattataa atcattacaa ataaaataaa agccactgca
    13081 cttggtatag gtatgttttt agcgataatt ccttttaaat cattatttgt ttcatctaca
    13141 tcttttccta gtgaataaag cacgcccata gttgagatca tcacttcttt agcagccaaa
    13201 ccactgatta aagatacgct taatttccaa tctaactcaa ggggttgaaa aataggttct
    13261 atgcctttgc caaattgtcc taaataactt tgttctatag ctctttcttg agcattaaaa
    13321 tcatttaaat tttcttcact ttttggaaaa ttgctagcaa accatatgag caaagaggcc
    13381 aaaagtatga aagttcctgc ttttttaaga tacattttgg ctttattata aaccataaac
    13441 caaactaaat gccaatttgg catacgatat tttggcattt ccataacaaa aggttcatca
    13501 agtccacgaa atgctgtcat tcttaaaaat tttgcagcac aaagtcctaa aatcgcacct
    13561 aaaatataaa ttccaaaaag ataatttcct gctttttcac ttggaaaaaa agcaccgata
    13621 aaaagcacat atacaggaag tcttgctcca caactcataa aattgatcac aaaaagagtt
    13681 aaaagcctat ctcttttgtt cttaagagtg cgtgtagcca taaaagcagg taccgaacaa
    13741 ccaaaaccag tgattagcgg aataaaactt ttaccatgca aaccaaattt atgtaaaatc
    13801 ccatcaagta aaaaagctac tcttgacata tagcctgtgg tttctaaaag agctatgcct
    13861 aaaaataaaa tcattatatt aggcaaaaaa agtatcacag caccaacacc tgcgataatc
    13921 ccatcagcca aagctgaagc gataaaggta ttagaaatat tgtttttaac aaattcacct
    13981 aaggtattaa agcccgattc tatataatcc ataggaattt gccctaagct aaaggtgagt
    14041 tgaaataaaa gccacattaa aaataaaaat ataggtaagc caaagaattt atggataagt
    14101 aaggcatcga tttttttggt taaatttctt tcttcttttt tgtgtgtaat aatttttttt
    14161 gaaagttcat taataaaata taataaatct tctttttccg gacttttttc gcaaagcgga
    14221 gtgtaaaatt gagatcttgg aataaattta ctttcaaata aaataataat tttttgcagc
    14281 aaaagttcta aattttcttt tgtttttgct gaaatttcaa caacttgact ttgaaattct
    14341 tggcttaaaa tagaagtgtc aagctctata ccttcttttt tggcttcatc gcacatattt
    14401 aaagctaaaa gcattttttt attaaggctt aaaagttctg cactaaggat aagattgcgt
    14461 tctaaattgg tagcatctaa aacattaaca ataacatcat agtcattttg atttaaaaaa
    14521 tgacgtgtga ttttttcttc ttcgctatat ccatctaaag aataagttcc tggcaaatca
    14581 atgacttcaa attcatagtt tttataaaaa gtttttgcgc ttgctttttc tatagtaact
    14641 ccgctaaaat ttcctacttt catattggct ttgcaaagtg cattaataag aagacttttg
    14701 cctacattag gctgacctac aagagctatt ttgatttttt tcatataaga ttcacttcta
    14761 tggttttagc ttcatcagat cttaggataa cacaacttgt atcaagttct accattatgg
    14821 tggcattttt taaagaggag tgaatttttt tcaagttttt atttttaata aatccaaagc
    14881 ttaaaagtct atttttgagt tctttgtgag cgtttaaatt gacaataata gccttttgtc
    14941 catcttttaa ctcgtttaaa gtcattgtaa ttcctaaatt aataataaat attataataa
    15001 aaaagtgtaa tgaaattatc cttcttgtaa aaagaaggat aaatatttaa aaagaaaagt
    15061 ggtttaaatt ttctagattg atgatttgat ctagaatttt gttagcttta gtattatcaa
    15121 ggtaaatttg tgcattggct aaaaatttag cttttaattc ttcaaaactt agtggattat
    15181 caaaattacc tttattgata aaaacatctt tttggattat gcgtccatct tgcaaactgg
    15241 cttctaaatg ccctggaaaa tattttggaa agccttgaga tttccttttt ttgtaactga
    15301 tttttttagc aaattctagt acttcttcac gctttaaatt ttcataagat tcaagagtga
    15361 ttttaccatc aaagaatcct agagccatta aaaaaggcat ggaaaatttg gcctcataag
    15421 cactgtttgg agtgtatttt gcttctaaag gatcgcaaat aaaagaaata ggaacttcat
    15481 ctacaaaaca acgaatgctt ttgatttcat ctgcttttaa gccatcattt tttaaagcta
    15541 tggcacaatc aataagacca tgagcaaaat ggcagcttgg ataaggcttt atagaaactt
    15601 gcatactttg ctaaatttca cccaagcctt tatcaagttc tgttttatcg cattcttgtt
    15661 ctataccaaa acatttaaag atattatccc tacctttaaa aatgcttaga ggttcactca
    15721 tgttattttt agcaaagtta gcgattaaaa ttccattttt aatggcattt gctatatgta
    15781 agacttttga attagagcca ttggataaga actcattaat cccacttgca aaacttccag
    15841 caagtcctaa agcattgatg atttgttctt tgttaagatc cagcaagatt gcacttgcac
    15901 tcacacttcc aaaaattcct gcaatagcag tggtatgaaa accacgctta tgaaaagtgc
    15961 ctttgcttgc aatgcctact ctagctgcaa tttcccagcc tattataaaa gctttgatga
    16021 tttttttcgc atctttgcta acatgaaaac cataacttaa acaaagagga gttaaaatcg
    16081 cacttgcgtg caaaatagct tctgtatgcg tatcatcaaa atcaagtgca tgagaagcaa
    16141 tgccatttag catggctgca taaatgggat ctaatttttt atcatgtacc catacagggg
    16201 tatttttttc tgtgcttaaa ttttcaaaag ctttaaaggc atttaaaacg cattcttcct
    16261 tactcgctgc tatagccgtt ccaaggctat caagcataag ctctttagct ctttgaacaa
    16321 ctgtattagg gatattttca tactgaagat tgaaaataaa atccgccaaa atttcgctat
    16381 agaacatgat ttttcctatt ttaagatagc gctatttttg atttttgcca aaaattcatc
    16441 tacaagtttt ggtgcatatc ctacataact tgttgcatca agtaaagcat cgatatcttt
    16501 ttcttttaag acttgagata ctcttgtatc tgcaagcaat acttctttga aagttttttg
    16561 ttgttcgata cctagcatag cgttttcata aacgatttca tgagcgtgtt gtttgccgta
    16621 atgatcgctt agtgcaaaca taacgcgttc tgccagtaca aagcctttaa gagtgtcaag
    16681 atttttaagc attttatctt ttttaacttc taggtcacta agagcaaatt tcatatttgc
    16741 taaaaccaca gaaagcatta aaaacatttc aggtaaaagt ttccattcca ttttccaaac
    16801 ttgcccatct ctttcatgct cgtgtctttc aatatcgctt aaaatggcta aatttgcctt
    16861 aaaggcattg cttactgtaa ctgcattttc gcttactgca ggatttcttt tgtgtggcat
    16921 agtgctagat cctacttgtc ctttgccaaa aggttctgct acttcatcga tttcattgtg
    16981 tgagagtatg agtaattgat gagcgatttt gttaaaggtt gcgttgatat tgcctagtac
    17041 aaaaccaagc tctataaagc gatcacgtgt gctctgccaa gagatattag gcacttcaag
    17101 tcctaaattc tctaaagtta gcttttctac ttcgttgcat tcatcgctta aactcgcctt
    17161 ggttccaaca gctcctacta tgctgcctac ataaagtctt ttttcaagtt caagtattct
    17221 ttcaaaatga cgatcaagct cgctaagcca gatggctacc ttatgcccaa aggtgatcgg
    17281 taaagcttgt aaagcaagag ttcttcccat catagcagtg tttttatggg ttttagctag
    17341 tttcgctaag gcttttgcga tagcttttaa ttcgcttttt acaagagtca ttgcttcttt
    17401 aaattgtaaa accagtcctg tatcgatgat atcttgagtg gttactctaa aatgtacata
    17461 ttcgcctaaa ttattatcgc aagctttttc taatcctctt acagtaggaa ctaaagggtg
    17521 tttggtcttt ttaaattcag caaagataaa gtccatatcc ataaatttat aatgagcttt
    17581 ttttgcgatc tcatcagctg cttttttagg gataatttta agttttgctt gtgcttttgc
    17641 taaagctgct tcaacatcga gccatttttg tatgcggttt tgttcgcaaa aaatagcacg
    17701 catttcctgc gtgctccatg agtctgctag taatctatga tcaaatacgc taattcctgt
    17761 catcttatct ccttattttt taatactatc aaaagcttgt gttaaatcag caattaaatc
    17821 tttagtatct tcaagaccta tatgaaatct tacaaatagc cctcttgcac ttaggtctgt
    17881 tgcagttcta ggcggagtag ttacggtggc taagctttca tatccacccc agctagcacc
    17941 aattgaaaag tattctagtt tatctacaaa tttaatagca tcatctttgt tataaccttc
    18001 tgcaaattct atggtaatca taccatttgc acctttatga tcacgcatga aaatttcatg
    18061 atttgggtgg gatttgagtt ttggatagaa aattgtttta atttcttttc tgctttgtaa
    18121 aaactctaca atttcatcag cacttttttc atgagctttc attcttacat ctagtgttct
    18181 cataccacga agtactaagt aagcatcatc aggacttgtt gtaaagccta aagcttctgg
    18241 aagtttgtca aaatttttcc attctttttc gttgattact actataccca tggttacatc
    18301 agagtgtcca ctaagatatt ttgtagcggc gataactgaa atgtctactc caagttctaa
    18361 aggatttaga aaatatccac tagaataagt attgtcaata gctacaggga tattatatgc
    18421 atgagcaatt ttgcaaagtt ttggtaaatc tatgatttca taaagtatag aacctggact
    18481 ttcgcatagg ataagcttgg tattaggttt gattttttct tctatatcac ttgcatcagc
    18541 ttttaaaaaa tcaatttcaa cgcctatttt gtctaaaaat aattcgcaaa tcgttcttac
    18601 aggcccataa attgcatcag tgattaaaaa atgtgcatct ttgcttgcat agtttaaaag
    18661 taccatggct aatgctgcaa gtcctgttgg aaaaagttgt gctctataac caccctctag
    18721 agtgcaaata agtttttcaa gttcaaaatt ggttgttgtt cctctagctc catagcttaa
    18781 aacacgatct gtttttctta attctctgta tttttccaag ttgcgtgatc tttaaaaagt
    18841 atggttgatg cacgcataag tgtaggattg actgatctta cttcagcacc ttgatcgcct
    18901 ctgccacaat gaataagttt agtttttgag ttcatttttt ctccttttta aagataaata
    18961 taagtcataa taacatttac aatagccgct acaagcatag gaatagctgt tcttttaact
    19021 acggcaaaag gacttacttt tgcaatagct gagatagcta agatcgctgg tgcaatagga
    19081 ctaacacatc ttccaaagcc cgtcatgatt tgaattggtg ctatcatggt gatagtttca
    19141 actccaaagt gttttgctat atttgggata agtggagcaa agctaaaaaa tgccgcattt
    19201 cctgaaccca ttaagaaagc acaaaccgca agcaagattg aaacggcgat aataatagcc
    19261 aaaactccaa atcctgcatt tttgcaaaat tctattaaag tatctacaaa acctacagat
    19321 aaaagaccac ttgcaaatac ttgaccgcaa acgatgagtg aaactgtgat aacaaataaa
    19381 tgtcccattc ctttaaagaa aatcataata gaattaagag tttctacaac gcttttatag
    19441 cgtatcattt caaaaataat agccacaaaa gttgaaatca ccattgctta ctggaacatt
    19501 cattttaatt gcagtgctag cagctgcttt aacttcttgg gcactactta ttcccattaa
    19561 aaccaagatg ctatcaagca cggaactaaa tcctaggatt aaaaccaaag gaattatagg
    19621 taaaatcgca taaattctag gaggcttttt aagttctttt tctttacctt cattttcatt
    19681 tagttctttt tcaatttctt gtgcattgaa ggcaaaatta tcttttttgt caaaaaattt
    19741 attgcaaaga tatatcgcaa tacctacagc tataatgata ggcaaggttg tagggagttg
    19801 ataatgaaca aaataaattg caggatcaac ttcagctact tttgatgcca tgatcacatt
    19861 tccacttcca ggtccatgat cgatatattg acaaatcgca atcacactta aggcagaaag
    19921 ttttgaaaca ccagaagtac aagtatagga tacatagtaa ccataagtaa aagtgccaaa
    19981 cctgcgtgag aagggataaa aagaaccaaa aattgcacga taaaatatgc aactaaaagt
    20041 aagatataag gggactttac catttttaaa ggtttttcaa aaactttaaa gagtgtataa
    20101 gaagccccaa catgatccat ataagcagaa aaacctgcta tagtcataag tgtaagtcca
    20161 agccctacta atgtacttga catggtttga ttgaaaactt gaaaaatatc aaaaaaacct
    20221 aaatttaaag aacctttagc gacaatatgt ggagaaagtc caaaaagagc agctaaggaa
    20281 agtaaaagta aaccacttaa aagcaatgcc atgtgagcat tgattttttt ataaagcata
    20341 aaaacaagca aaaaaacact aaataaagaa aaaacaatac ctagcatgtt ttatcctttt
    20401 tgagcgatga tctctatctc tactttagct ttttttggta gatcttttac cgcaaaagca
    20461 cttcttgctg gataaggagc tttaaaaaat tcagcataaa tttcattgaa tgctacaaaa
    20521 tcattaatat cagctaaaaa gcaagtggtt ttaatcactt tatcataact gataccattt
    20581 tcttctaaga tagcaccgat attttttaaa gattgtttgg tttgttcttt gatatcagag
    20641 ctttctattt ctcctgaagc agggttgata ggaagttgtc ctgatataaa taaaagtcca
    20701 tttacttctc tgtaagctga gtatggacca atggcctttg gatagtttga catgaattct
    20761 cctttgttaa atatagatta agcagaatgc attttatcac tacaataata atttgtcaat
    20821 agtttattat cataataata aaattttatt tttaagaaat gttttaaagt ataaagagta
    20881 gaatttaata ttatattaat tttttattga aggcagtttt atggatgagg gacaaaaaca
    20941 acaatttata aagttgacat attttttagg agaagtttta ggtgagcaat atgagatagt
    21001 ttttcatgta attactgaag atggggccta tattgcagca attgctaaca gtcatattag
    21061 tggaagaagt ttagattctc ccttgactgc ttttgcaagt gagcttatgc aaaataaaaa
    21121 atatttagaa aaagattttt tatgtgatta taaggctctt gttggaaaat caaaattaat
    21181 tagaggatct acttttttta ttaaaaatca tgacaaatta gtaggtattt tgtgtatcaa
    21241 tcatgatact agcattatga gagatttaat atgcaagatg attgatttag aaaaaattgg
    21301 agatatgggt gatattttag gaaatattag tttttctcaa aatgattcaa gtatagaaac
    21361 attaagtcac tcgatagagg atattttagt tcaaagcgta gattctagtt atttaaattc
    21421 tgattatcaa ttaagcatta ctcaaaaaga agaaattgct gaaaagctat atgaaaaagg
    21481 tatttttaat ataaaagggg cggttcctat cgtagcaaaa tttttaaaaa tttcagaacc
    21541 tagtgtctat aggtatctga agaaatttaa aaaataacta aaattttttg ataaatttta
    21601 gtatttttag gcttattttc tttaaaaaat tatttttaga ttttttgagt aaaaattctg
    21661 ccacatcttt gcgtccaaac ataatagcaa aagtataagg tgtcattcct aaaccattgt
    21721 tttcatcaat atttgctcca tatttaacta aaagttcaca cataggtaag tatcctttaa
    21781 aacaaactcc cgctaatggg gtttgtccac gatcgttttt ttcatctact tttgcacctt
    21841 tttctaaaag cattttagcg ctttcataag aattattata agctgcaagc ataagcaagc
    21901 tatcgccttt atgagttttt aaatttacat ttaaacctgc ttctatcatg attttaagat
    21961 tttcacattc attatttctt gcaaaattaa aagccatttt gcaaagctct tcaaatcttt
    22021 tttcttcttc taaactaaga gttgtcattg tttttcctta attattataa tctttagttt
    22081 gccaccaaaa gtggcaagta aaaattattt ttctaaagct tttttaattc cttttgcata
    22141 atcaggtgaa attttttcaa aatgttttaa agctctagtg ataatttttt catcaactcc
    22201 ttccatagaa gcggcgatat tatgaaaaag ttgagttttt tgatcatcat tcataagatt
    22261 aaataaagct cttggttgag tataaaagtc attatctagt ggagcatatc tttgtgctac
    22321 gccttctaag actaaatcag gttcaagata gcttttgtct tcttttgggc tattatcata
    22381 gctgtttggt tcataataag cagcatcatt tttataacta tcaaaattca tagcaccagc
    22441 gacattgtaa gtattcactt cgctttttgc acgatttact ggtaaaagat gataattagt
    22501 tcctattcta tatctttgtg catcaggata tgaaaaaatt ctagcttgca acattttatc
    22561 agggctaaag ccaattccag gaacgatatt gcttggacta aaggcagctt gttcaacttc
    22621 attaaaataa ttttgaggat ttttgtttag aatcatttcg cctatatcca tcaaaggtac
    22681 aaaactatga ggccaaattt ttgttaaatc aaaaggatta aatccaagtt tttctatatc
    22741 tttttcagca agaatttgaa cttgaacttt ccattttgga aaatctttat tttctatagc
    22801 attatagaga tctctttgat gactttctct atcttttgct ataagctcgg cagcttcttg
    22861 gttggtaaga tttttaatcc cttgttgggt tttaaaatgg aatttcaccc aaaatctttc
    22921 atttttatca ttaataaaac tataagtatg gcttccaaat ccatgcatat gacgataact
    22981 tgcaggaatt cctctatcgc tcataagaat ggttacttga tgtaaacttt caggacataa
    23041 actccaaaaa tcccaagcag cattattact tcttagatga gttcttggat ctcttttttg
    23101 agtatggatg aaatcaggga atttataagc atcgcggatg aagaatgtcg gagtgttatt
    23161 tcctaccaag tcccagtttc cttctttagt gtaaaattta atagcaaaac ctctcacatc
    23221 gcgttcagca tctgctgcac ctgcttcacc tgctactgtt gaaaagcgta aaaataatgg
    23281 agtaacttcg cctttttgaa aaattttagc tttggtataa gcacttaagt ctgctgtaat
    23341 ttttatttcg ccataagctc cacttccctt agcatgaacg gttctttctg gaattctttc
    23401 tctattttga tgagcaagtt tttcaagcaa aagataatct tgcataagta aaggtccttt
    23461 tgcgcctgcg cttaatgaat tttggttatc agctataatg tttccaaaat cgttagtcaa
    23521 ttttttcatt g
//
LOCUS       DAPIWQ010000007        23064 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.007, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000007 DAPIWQ010000000
VERSION     DAPIWQ010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 23064)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23064)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23064
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.007"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            34..483
                     /locus_tag="RJ267_000208"
     CDS             34..483
                     /locus_tag="RJ267_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HDV7388095.1"
                     /translation="MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAY
                     EEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYL
                     LAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM"
     gene            548..1585
                     /locus_tag="RJ267_000209"
     CDS             548..1585
                     /locus_tag="RJ267_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7388096.1"
                     /translation="MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIF
                     NFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINI
                     PIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKN
                     ILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYV
                     IYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNF
                     YSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFE
                     VISFDKFSLGF"
     gene            complement(1582..2313)
                     /locus_tag="RJ267_000210"
     CDS             complement(1582..2313)
                     /locus_tag="RJ267_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HDV7388097.1"
                     /translation="MKPIIIFFSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKM
                     NEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAE
                     YKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHK
                     IKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKG
                     YYINLITKIIKRYNLEKYDTNSNNT"
     gene            complement(2288..3037)
                     /locus_tag="RJ267_000211"
     CDS             complement(2288..3037)
                     /locus_tag="RJ267_000211"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HDV7388098.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAK
                     VNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQK
                     YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPK
                     SGEEVGFAYKNEELFFEGKVKYCFEANYNFF"
     gene            complement(3034..3639)
                     /locus_tag="RJ267_000212"
     CDS             complement(3034..3639)
                     /locus_tag="RJ267_000212"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HDV7388099.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENA
                     LELEKIFSPFSLKNLLKKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQ
                     ILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLD
                     SQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGNM"
     gene            3700..4689
                     /locus_tag="RJ267_000213"
     CDS             3700..4689
                     /locus_tag="RJ267_000213"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HDV7388100.1"
                     /translation="MKISYEDAGVSIDNGNTFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALSSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDIL
                     LEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYT
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSKILENSDAFIIGEICINEGIVLE"
     gene            complement(4710..6164)
                     /gene="dcuC"
                     /locus_tag="RJ267_000214"
     CDS             complement(4710..6164)
                     /gene="dcuC"
                     /locus_tag="RJ267_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
                     /protein_id="HDV7388101.1"
                     /translation="MPIFMICSTLLAVIVVAYYILKKYNPIFVFFLSGIILLIFAFYI
                     TGTPIQKAPSREHASFLNVLLDSYAFITATFKSQLSGVGLIIMSVAGFAAYMKHINAS
                     AKLAFLANKPLGKIKNKYLILSGTFVVGMALKIVISSYAGLLLLLLACIYPVLISLKI
                     RPITAVCVLSLIALDYGPKDGNSINMADMVGQSDNVVGLFLNYQIYSVIAYVVVIAIL
                     IPFYFAWIDKRDKEKGVLNDEVEIPQIIDPKCPTFYILFPWLPVVFLFTAYFFTIKLD
                     VVTANFVSISLVFLVEFARHRNARKLGEDIMVILKAMAEIFISVVSIIIAAGVFAEGI
                     KALGGVNILANAVSNLGTGNFAWFGILLSIAILSFLVYFATVIMGSGIAAFNTFGKLA
                     PDIATKLGVAPITLVLPIEIASCLGRAASPIAGGIIALAGFAKVAPMDIIKRTTPLLL
                     IAMLVNVLVAFYLAQTNPLPKEQNTTKIELKIQK"
     gene            6371..9334
                     /gene="cas9"
                     /locus_tag="RJ267_000215"
     CDS             6371..9334
                     /gene="cas9"
                     /locus_tag="RJ267_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344900.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HDV7388102.1"
                     /translation="MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESL
                     ALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPY
                     ELRFRALNELLSKQDFARVILHIAKRRGYDNIKNSDNEEKSEILKAIKQNEEKLVNYQ
                     SVGEYLYKEYFQKFKENSKEFINVRNKKESYERCIAQSFLKDELKLIFQKQREFGLSF
                     SKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLN
                     NLKNTEGILYTKDDLNTLLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKK
                     YKEFIKALGDHSLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKD
                     HLNISFKALKLITPLMLEGKKYDEACNELNLKVVINEDKKDFLPAFNETYYKDEVTNP
                     VVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDA
                     ELECEKLGLKINNKNILKLRLFKEQKEFCAYSGEKIKLSDLQDEKMLEIDHIYPYSRS
                     FDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSTKWQKIEVLAKNLPTKKQKRILDKNY
                     KDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDIQKGSKVHVEAK
                     SGMLTSALRHTWGFSTKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELY
                     AKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEF
                     YQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFAL
                     KVLPNKAVVQGKDKKSGLIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNA
                     FTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALG
                     EVTKAEFRQREDFKK"
     gene            9331..10221
                     /gene="cas1"
                     /locus_tag="RJ267_000216"
     CDS             9331..10221
                     /gene="cas1"
                     /locus_tag="RJ267_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HDV7388103.1"
                     /translation="MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINII
                     VLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSA
                     QKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYF
                     KTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALC
                     DDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYV
                     ANFKNALLYEDELKIVKFDD"
     gene            10214..10645
                     /gene="cas2"
                     /locus_tag="RJ267_000217"
     CDS             10214..10645
                     /gene="cas2"
                     /locus_tag="RJ267_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HDV7388104.1"
                     /translation="MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFS
                     VYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNE
                     TNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF"
     gene            complement(11143..12333)
                     /locus_tag="RJ267_000218"
     CDS             complement(11143..12333)
                     /locus_tag="RJ267_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDV7388105.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDI
                     IFMP"
     gene            complement(12337..12783)
                     /locus_tag="RJ267_000219"
     CDS             complement(12337..12783)
                     /locus_tag="RJ267_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HDV7388106.1"
                     /translation="MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGG
                     IEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            complement(12784..13005)
                     /locus_tag="RJ267_000220"
     CDS             complement(12784..13005)
                     /locus_tag="RJ267_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HDV7388107.1"
                     /translation="MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFNENTKLKDGDKIALLPPVCGG"
     gene            complement(13007..14548)
                     /gene="cueO"
                     /locus_tag="RJ267_000221"
     CDS             complement(13007..14548)
                     /gene="cueO"
                     /locus_tag="RJ267_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HDV7388108.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAG
                     EERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDK
                     MMVKEESNTLFLANINLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGK
                     SENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRAFRDTINVRPNEELRLKMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
     gene            14672..15820
                     /gene="nspC"
                     /locus_tag="RJ267_000222"
     CDS             14672..15820
                     /gene="nspC"
                     /locus_tag="RJ267_000222"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HDV7388109.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTI
                     EGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN"
     gene            16124..16837
                     /locus_tag="RJ267_000223"
     CDS             16124..16837
                     /locus_tag="RJ267_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HDV7388110.1"
                     /translation="MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTM
                     QECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENS
                     NPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINK
                     SIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEF
                     LRREANKQRRTREKSQGIS"
     gene            16812..17003
                     /locus_tag="RJ267_000224"
     CDS             16812..17003
                     /locus_tag="RJ267_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HDV7388111.1"
                     /translation="MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKK
                     KEVLFQRSANWENYYIKAE"
     gene            17003..17545
                     /locus_tag="RJ267_000225"
     CDS             17003..17545
                     /locus_tag="RJ267_000225"
                     /inference="COORDINATES: protein motif:HMM:NF016750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HDV7388112.1"
                     /translation="MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELK
                     EAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAY
                     YIRKFAAFFGTNNVDHQARI"
     gene            17594..19807
                     /locus_tag="RJ267_000226"
     CDS             17594..19807
                     /locus_tag="RJ267_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HDV7388113.1"
                     /translation="MTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIV
                     VDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREE
                     AAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQ
                     MVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYE
                     WLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQ
                     QVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQW
                     RFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRS
                     IGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTD
                     IEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQE
                     KEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDL
                     VQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYL
                     TRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHF
                     TGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK"
     gene            19804..20445
                     /locus_tag="RJ267_000227"
     CDS             19804..20445
                     /locus_tag="RJ267_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HDV7388114.1"
                     /translation="MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIR
                     RRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL"
     gene            20442..21374
                     /locus_tag="RJ267_000228"
     CDS             20442..21374
                     /locus_tag="RJ267_000228"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HDV7388115.1"
                     /translation="MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHF
                     IAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLCWIKRML
                     PASYDIRWMMIVGGYLSKIKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
     gene            21541..22323
                     /gene="fdhD"
                     /locus_tag="RJ267_000229"
     CDS             21541..22323
                     /gene="fdhD"
                     /locus_tag="RJ267_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HDV7388116.1"
                     /translation="MDPLFTTQILKYKGDESFTCNDTLVREIKLEIFINDEKVGALMA
                     TPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVI
                     SGCGRAHTANIDPEAIEASKISSDAKFSKDEILKQMSTFYTQCELYEKTGCVHTAKLF
                     VDEKTFFIGEDIAQHNTIDKALGKACLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPV
                     LVSRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
     gene            22316..23053
                     /locus_tag="RJ267_000230"
     CDS             22316..23053
                     /locus_tag="RJ267_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HDV7388117.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNINIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKTYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRAMELM
                     ENYSILQKDIEEYANKRFKELFLKGKK"
BASE COUNT         8128 a         3153 c         4028 g         7755 t
ORIGIN      
        1 tataatttta aaaattaaaa aaaggagtca atcatgtcag ttacaaaaca attattacaa
       61 atgcaagcag atgctcatca tttatgggtt aaatttcata attatcactg gaatgtaaaa
      121 ggtttgcaat ttttttctat acacgagtac acagaaaaag cttatgaaga aatggcagaa
      181 ctttttgata gttgtgctga aagagtttta caacttggcg aaaaagctat cacttgccaa
      241 aaagttttaa tggaaaatgc aaaaagtcca aaagttgcaa aagattgctt tactccgctt
      301 gaagtcatag aactgatcaa acaagattat gaatatcttt tagcagaatt taaaaaactc
      361 aatgaagcag cagaaaaaga aagtgatact acaacagctg cttttgcaca agaaaatatc
      421 gcaaaatatg aaaaaagtct ttggatgata ggcgctactt tacaaggtgc ttgcaaaatg
      481 taatttaagg ggctttatgc cccaattata caaactaggt tataatatcc ttttttaaag
      541 gataaaattg aaagtactta atttttttta tgaaaaccac cctaaatttg aagtaagtta
      601 tgaaagaaaa aatcaaattt caaaaccaaa tattatcata aaaggcccac gattttgtgg
      661 taaaaaaaca cttattttta attttttatc tcaatttaaa gcaagtgaaa ttttgttttt
      721 agatttatat gatacacgct ttgaaaaaca aagtttagaa agacttgctg attttctgaa
      781 tgaaaattta caaattaaaa ttctttgcct ttataatttg gattttatcc ctaatttaga
      841 aaaaattaac attcccatca tcttaagtac aaatataaaa gatttaaatg taaatgggtt
      901 tgaagagctt gaacttgatt attttgattt tgaagaattt attagtgtaa gtaagaaaaa
      961 tttacctata aataatttag taggtctttt tttgcaaagt ggacgcagta aatttggaga
     1021 aaaaaacata cttctaagac aaagcttcac tcttttagaa ttagaaattt taaagtattt
     1081 agctttaaat ttgggtcagc aaatcagtat ttctaagata tttatagaac tcaaaaaaag
     1141 attaaaaact tcaaaagata gtgtttatca agctataaaa aaattagaaa atacttatgt
     1201 gatttatacc ttaaaacatg atgaaaaaaa acttcaaaag atttatttta aagattttgg
     1261 cctaagaaat aatctttgta tttcaaagga tttttcacat ttatttgaaa atttagtttt
     1321 aagcgagttg tttaaattta aagaagaatt tttttataac aaatacttta acttttatag
     1381 ccaaatatct aaaattgctt atatttcaag tccaacttta gatattgatt tgatcaagct
     1441 acgtgctaag aaaattttac caaaggcttt agaacttgga atttttcatg tgatttttat
     1501 cactctttca agcgaggata atttttttga acaaggggtt aaatttgaag tcatatcttt
     1561 tgataaattt tcacttggat tttaggtgtt gtttgagttt gtatcgtatt tttcaaggtt
     1621 gtatcgtttg atgatttttg taataagatt gatataatat cccttgcgtt cagaataaga
     1681 atctaaagtt ttaatagcct ctagccctgt tatctctttg ccttcgcttt caaatttagc
     1741 tcttgcatcg cgaaactttt cataagcaaa atgacgattt aaatttaaaa cataagagtc
     1801 aacactatct tgcagactat caaaaatttt aattttgtgt tttttatctg gatgtcttaa
     1861 atcaggaatt aaacctttct caccccaagt ccattctcca aaaagattgt ttgcttctct
     1921 tgcgaagcga ctggtacctg tagcactttc aactaaagct tgggctatac ccatggattt
     1981 tggaattttt tgaatacgtt ttttatattc tgcaaaatca taaagatttt caatgcgata
     2041 tttgtttttt atcgtgataa gtttttcaag atttatttgg tttgaagtcc taaagcctgt
     2101 tttgtaagca tctttaaaaa aggcttcgat aaaagctctt tcttgttcaa tttttttaaa
     2161 gctttgatca aacatttcat tcatttttat aaaaaaaatt tgtctttttt gatctatatc
     2221 aagtttgtaa tattcttctc caaatccact ctttagatca tcagcaaaaa gtgggattag
     2281 aaaaagacta aaaaaaatta taattggctt caaaacaata ctttaccttt ccttcaaaaa
     2341 acaattcttc atttttatat gcaaacccta cctcttcacc acttttagga gttattttaa
     2401 ctttattttg tactttttta tttaaaaatg ccagataaaa acaagccccc attcctgtgc
     2461 cacaagctaa ggtttcatct tcaactccgc gttcataggt gcgaactttt aaatgatttt
     2521 catctaaaat ttttacaaaa ttaacattgg cattatattt ttgtctcatt ttttgacaaa
     2581 gcattgtatc aaattcatct aaattttgac aaaaatgtac tagatgtgga actccagtgt
     2641 tgcaaagttg ccaagttttt cctaattctt caaaagtatt ttgcacgctt tttattttgc
     2701 ctaaagatac ttcaacttta tcttgattta cctttgcttt tattattcct gcaccggtta
     2761 aaaaactcat gttaggattt attttgttaa tatgatgtgc aaaatgtgcc gcagcccttg
     2821 agccattgcc acacatagca gcccttgagc catcgttatt ataaaattcc cattcaaagt
     2881 cgtatttttc atgaggcaat attacgataa agccatccgc acctataccc tcataacgat
     2941 tacaaagttc tttagctaaa gcacttctat cttcttttct atcagcattt gttatgacaa
     3001 aatcattccc acttgcacaa tatttataaa atttcacatg tttcctttag aaatttcttg
     3061 tattacttta acacattctt gcctaaaatc ggcataagaa ttagtatttt taatgataaa
     3121 atctgctttt ttaagttttt cttcaatatc tatttgagaa tcaagtcttg cttttgcagc
     3181 ttctaagcta agcttatctc tttgcatgat tcttttaagg cttaattctt taggtgtgta
     3241 aattacaatg actttgccta aattttcata agcaccgctt tcaaaaaaaa gaggaatttc
     3301 tacaaaaaaa gctttatttt ctttatctag aatttgcatt tgttctaaaa ttttagctcg
     3361 aattttagga tgagtgaaat tttctaagat ttttttagct tctttattgt taaaaacaat
     3421 ttctccaagg atttttctat cgattttctt ttcttttttg agtaaatttt ttaaactaaa
     3481 gggagaaaaa atcttttcaa gttctaaagc attttcatct aaaattttat gagcgatttt
     3541 gtctgcgcta atgcttttaa agcctaaaga attcgctatt tctataaaag tgcttttacc
     3601 acaagcaatt gaagcggtta caaaaaaagc atttttcatc ttatgcctta ttaaaacttt
     3661 tttcgttaaa ataccttttt agttcttaaa ggaaaataaa tgaaaatttc atatgaagat
     3721 gcaggcgtaa gtatagataa tggaaatacc tttgtagagg ctataaaacc tttggttaaa
     3781 gaaactttta atgataatgt tgtaggtgga attggttctt ttgctggtgc ttttagaatg
     3841 ccaagtggtt ttaaaaagcc tgtgatttta ggtgcaacag atggggttgg taccaagctt
     3901 cgcttggcaa ttgatgctaa aaaatatgat actatagggc aagatttagt agcaatgtgc
     3961 gtgaatgatt tgatttgtaa ttttgctacg cctttgtttt tcctagatta ttatgctaca
     4021 gccaagctcg aagtagaagt agcaaaggct gttgtatcag gcattgccaa gggatgtaag
     4081 atggcaaatt gtgcattaat tggcggagaa actgctgaaa tgcctggaat gtatgcaaaa
     4141 gatgattttg atcttgcggg ttttgcagtg ggtatggctg aagaagatga gattgataga
     4201 agtaaatttg ttaaaaatgg tgatatttta ttggcacttt ctagttcagg acttcattca
     4261 aatggttatt ctttagctag aaaagtactt tttgaaagtt taaaattaaa atttgatgac
     4321 aagatagagg gtaaaaattt aattgatatt ttgttagaac ctacaaggat ttatgtgcgt
     4381 gattttctta cactaaagcc ttatatcagt gctctagcac atattacagg gggtggttta
     4441 gtagaaaatt taccacgcgt tttacctcgt ggtatgggtg caactatacg caaacatcat
     4501 cttaaaactc ctgaaatttt ttatactata ggacaggctg tagaagaaag cgaaatgtat
     4561 agaagcttta acatgggagt gggtttagta atggttgtag atccttctaa tgtaagtaag
     4621 attttagaaa attcagatgc ctttattatc ggcgaaattt gcattaatga aggtattgtt
     4681 ttagaatgaa aataaagcgt taatacgctt tatttttgta ttttaagttc tatttttgta
     4741 gtgttttgtt cttttggcaa aggattggtt tgtgctagat aaaaggctac aagtacattt
     4801 acaagcatag cgataagtaa aagaggagtg gttcgtttta taatatccat tggagctact
     4861 tttgcaaatc cagctaaagc tatgattccg cctgctattg gtgaagctgc acgacctaaa
     4921 caagatgcaa tttctatagg taaaactaga gtaataggtg caacgcctaa ttttgtagct
     4981 atatcaggag ctagttttcc aaaagtatta aaagcggcaa ttccacttcc cataatcact
     5041 gtggcaaaat aaactaaaaa gcttaaaata gctatactca aaagaattcc aaaccatgca
     5101 aaatttcctg ttccaagatt tgaaaccgcg ttagcaagga tattaactcc accaagtgct
     5161 ttaatgcctt cagcaaatac tccagcggcg atgattatgc ttacgactga gataaaaatt
     5221 tcagccatag cttttaaaat caccattata tcttcgccta attttctagc atttctgtgt
     5281 cttgcaaatt caacaagaaa aactaaagaa atgcttacaa aatttgctgt tacaacatca
     5341 agcttgatag taaaaaaata cgctgtaaat aaaaatacaa caggtaacca aggaaagagt
     5401 atgtaaaaag tagggcattt aggatcaatg atttgcggaa tttcaacttc atcatttaaa
     5461 acaccttttt ctttatctct tttatcaatc caagcaaaat aaaaaggaat caagatggca
     5521 ataactacaa cataggcaat cacactataa atttggtaat ttaaaaaaag ccctacgaca
     5581 ttatcacttt gtcctaccat atctgccata ttgattgaat ttccatcttt tggaccataa
     5641 tcaagcgcaa ttaaagaaag cacacataca gctgtaatag gacggatttt aagtgagatt
     5701 aaaacaggat aaatacatgc taacaaaagc aaaagcaatc cagcatagct agaaatgacg
     5761 atttttaaag ccattccaac aacaaaagtt ccacttaaaa tcaagtattt atttttgatt
     5821 tttcctaagg gtttatttgc taaaaaagca agttttgccg aagcattgat atgtttcata
     5881 taagcagcaa aacctgccac actcatgata ataagtccta ctccagaaag ctgactttta
     5941 aaagtcgctg tgataaaagc ataactatca agtaaaacat tcaaaaagct tgcatgttct
     6001 ctgctcgggg ctttttgtat aggtgttcct gtgatgtaaa aagcaaaaat aagcaagata
     6061 atacctgaaa gaaaaaatac aaaaatggga ttgtattttt tgagtatata ataagcaaca
     6121 acaattaccg ctaaaagtgt agaacatatc ataaaaattg gcatgatttc tcctaaggtt
     6181 attattagct tttattttat tttagctaaa atttaactaa taaatatttt tcatttaaaa
     6241 ttttacttat tttttgcatt ataaaattaa tcatatgtat agtttggtta ctgaaaagtt
     6301 tatgtttgta taaaaaatga tttttatatt ataattataa acaaatcata aatattaaaa
     6361 aggatctagt gtggcaagaa ttttggcatt tgatatagga ataagctcta ttggctgggc
     6421 atttagcgaa aatgatgagt taaaagattg cggagttagg atttttacaa aggctgaaaa
     6481 tcctaaaaca ggagaatcct tagccttgcc aagacgcctt gcaagaagtg ctagaaaacg
     6541 ccttgctaga cgcaaagcaa ggctaaatca cttaaaacat ttaatcgcaa atgaatttaa
     6601 gttaaattac gaagattatc aaagctttga tgaaagttta gctaaggctt ataaaggctc
     6661 tttaattagc ccttatgagt taagatttag agctttaaac gagcttttaa gtaagcaaga
     6721 ttttgcaaga gtgattttac atattgcaaa aaggcgtggt tatgataata taaaaaatag
     6781 cgataatgaa gaaaagagtg aaattttaaa agctatcaag caaaatgaag aaaaactagt
     6841 aaattatcaa agtgtgggag agtatcttta taaagagtat tttcaaaaat tcaaagaaaa
     6901 ttccaaagaa tttataaatg ttagaaataa aaaagaaagt tatgaacgct gcatagcgca
     6961 aagtttttta aaagatgaat taaagcttat ttttcaaaaa caaagagaat ttggcctttc
     7021 tttttcaaag aaatttgaag aagaagtgct tagtgtagca ttttataaaa gggctttaaa
     7081 agatttttct catttggtgg gaaattgtag tttttttact gatgaaaaaa gagcgccaaa
     7141 aaattcgcct ttagctttta tgtttgtagc gcttacaaga attatcaatc ttttaaacaa
     7201 tcttaaaaat actgaaggaa ttttatatac aaaagatgat ttaaacacgc ttttgaatga
     7261 agttttaaaa aacggcactc taacttataa acaaacaaaa aagcttttgg gcttaagcga
     7321 tgattatgaa tttaaaggag aaaaaggaac ttattttatt gagtttaaaa aatataaaga
     7381 atttataaaa gccctaggtg atcatagttt aagccaagat gatttaaatg aaatagcaaa
     7441 agatattacc cttataaaag atgagattaa gcttaaaaag gctttagcaa aatacgattt
     7501 aaatcaaaat caaattgata gtttaagcaa attggaattt aaagaccatt taaatataag
     7561 ttttaaagcc ttaaaactta tcactccttt aatgcttgaa ggtaaaaaat acgatgaagc
     7621 ttgtaatgag cttaatttaa aagtagtaat caatgaagat aaaaaagatt ttttacccgc
     7681 atttaatgaa acttattata aagatgaggt aactaatcct gtagttttaa gggcgattaa
     7741 agaatacaga aaggtcttaa atgctttact taaaaaatac ggcaaagtgc ataaaataaa
     7801 cattgaatta gcaagagaag taggtaaaaa tcacagccaa agagctaaaa tagaaaaaga
     7861 gcaaaatgaa aactacaagg ccaaaaaaga cgccgagctt gagtgtgaaa aactaggctt
     7921 aaaaataaat aataaaaata ttttaaaatt aagattattt aaagaacaaa aagaattttg
     7981 tgcttatagt ggagaaaaga ttaaacttag cgatttgcaa gatgaaaaaa tgcttgaaat
     8041 tgaccatatt tacccttatt ctagaagttt tgatgattct tatatgaata aggttttagt
     8101 ttttaccaag caaaatcaag aaaagcttaa taaaaccccc tttgaagcct ttggcaatga
     8161 tagtacaaaa tggcagaaaa ttgaagtttt agcaaaaaat ttgcctacta aaaagcaaaa
     8221 aagaatttta gataaaaatt acaaagacaa agagcaaaaa gactttaaag atagaaatct
     8281 aaacgatact cgctacatcg caaggcttgt tttaaactat actaaagatt atttagattt
     8341 tttaccttta agcgatgatg aaaatacaaa gttaaatgac atacaaaaag gctcaaaagt
     8401 gcatgtagaa gcaaaaagcg gtatgcttac atcggcttta agacacactt ggggctttag
     8461 cactaaagat agaaataatc atcttcatca cgccatcgat gcggtaatta tagcttatgc
     8521 aaacaactct atcgtaaagg ctttttcaga ttttaaaaaa gagcaagaaa gcaacagtgc
     8581 agaactttat gcaaaaaaaa ttagtgaatt agattataaa aacaaaagga agttttttga
     8641 gccttttagt ggttttaggc aaaaggtttt agataaaatt gatgaaattt ttgtctcaaa
     8701 acctgagaga aaaaagccaa gcggagcctt acacgaagaa acatttagaa aagaagaaga
     8761 attctatcaa tcatacggcg gaaaagaagg agttttaaaa gccctagagc ttggtaaaat
     8821 ccgcaaagta aatggtaaaa ttgttaaaaa tggcgatatg tttagagtgg atatttttaa
     8881 acacaaaaag acaaataaat tttatgctgt gccaatttat actatggatt ttgctttaaa
     8941 agtattacca aataaagccg tggtgcaagg taaagataaa aagtcaggtc ttataaaaga
     9001 ttggatttta atggatgaaa attatgagtt ttgcttttct ttatacaaag atagtttgat
     9061 tttaattcaa actaaagata tgcaagagcc agaatttgtt tattataatg cttttacaag
     9121 ctctactgtt agtttgattg tttcaaaaca cgataataaa tttgaaacgc taagcaaaaa
     9181 tcaaaaaata ttgtttaaaa atgcaaatga aaaagaagta atcgcaaaaa gcataggaat
     9241 tcaaaatcta aaagtatttg aaaaatacat agtttcagca cttggggaag ttacaaaggc
     9301 tgagtttaga caaagagaag attttaaaaa atgagttacg atgaagcttt taaaacactg
     9361 cttattagct ctaatgccaa gctaaattta gagctaaatc atcttgtgat taagcaagat
     9421 gaaaatatag ccaaattgtt tttaaaagat ataaatatca tcgttttaga aagcttacaa
     9481 ataagcatta gttccgcact ttttaatgcc tttgcaaagt ataaaattat cttattaacc
     9541 tgcgatgaaa ctcatagtat aaatggcgtt tttactcctt ttttagggca ttttcaaagt
     9601 gcaaaaatcg caaaagagca aatgaatgta agtgctcaaa aaaaggctat tttatggcaa
     9661 aaaatcatta aaaataaaat cctaaatcaa gcctttatct taaaaaaaca caataaaata
     9721 gagcaaagca atgagcttat aaatttggct aaaaaagtaa gcttaaatga tagtaaaaat
     9781 attgaagctg ttgcggcggc gctttatttt aaaactttgt ttggtacttc tttttcaaga
     9841 gatgagcttt gctttgaaaa ttctgcttta aattatggct atgcaatcat tagggcttgt
     9901 attattagag cagtttgcat aagtgggctt ttgccttggc ttggcataaa gcacgataat
     9961 atttataatt cttttgcgct ttgtgatgat ttgatagaag tgtttagggc tagtgttgat
    10021 gattgtgttt taaagcttaa gggtgaaagt gagtttttaa gcaaagatga caaaagagcg
    10081 ttgattggca atttacaaag taaaatcaat tttgatgggc aaaattatcc tttaaacaga
    10141 gcgataaatc attatgtggc aaattttaaa aatgctttat tgtatgaaga tgaactaaag
    10201 atagtgaaat ttgatgattg aagataaatt tatgcgtgtg cttttgatgt ttgatgtgcc
    10261 aactaaaagt aaaaaagagc aaaaactagc aagtaaattt agaaataatc ttataaaatt
    10321 aggttatttt atgctgcaat ttagtgttta tatgcgtatt tgcaagggtt taagttctgc
    10381 aaaaagttct attgaaaatg taaaaaagat tttgccacct tatggaaatg taagggcttt
    10441 aatcatcact gaaaagcaat ttgataaaat ggagcttttg cttggtggca tagtttttaa
    10501 cgaaaaagtt aataacgaaa ccaatttaac gctttttgat atagatagtc atggagaatt
    10561 taaatataaa aattcaaata atgaagaaat tcaaataaac aaaaaacaag aaaaatatca
    10621 tcagcaaaat ttatttgaat tttaaaagcg gttttagggg attgtaaccc cgcagagtcc
    10681 cgcaaactct ttattttagt ccctttttaa atttcttatg agattatagc ataatttttg
    10741 ctatttttca tgaaaaaacc ccgaaatttt cattatctgg taaatatcta ttttaccata
    10801 aagaaattta aaaagggact aaaactatat ttattatccc aaatcctaaa atcaaatttt
    10861 accataaaga aatttaaaaa gggactaaaa cgtgccatca tcagattgag caaaatatcc
    10921 tattttacca taaagaaatt taaaaaggga ctaaaacagt taaattcaac taatgaaact
    10981 ttggaaaatt ttaccataaa gaaatttaaa aagggactaa aacaaaccct agtggattga
    11041 aactccacta gggctaatta ctccactaaa aggaggttgc gaatttgaaa cttattgaaa
    11101 tttagggttg attaaaatcg aaataaaatt atttaaataa ttttaaggca taaagataat
    11161 atctactaaa ctttcatttt ctaacatttc acattctttt ggcaccacca taagggcagc
    11221 tttattgtta agattgttta taatcgcact agagccttct tttttgcctt caagattggc
    11281 taaaatgcgt ccatttttaa actctatatt gcaagcgaca aattccaaat aaggtgtttt
    11341 tttcttgtaa cttccttgta aaaaggcttt gcaaatatag tctttaggtt gaagtaacca
    11401 agagtttaaa atctctcttg tgtaaagatt aaacattacc atagccgagt aaggaaaacc
    11461 tggtaaggcg atgatgaatt tttcattagc cttagctatt ttgatatgtc tacctggttt
    11521 tatgtcggct ttatcgatga tgatttcgta ttctttgatg gcttttttta aaaagtcaaa
    11581 atctcccata gaaaccccgc ccgttgtaac caaaatatca caactttgca aagcactttc
    11641 aagggtggaa aaagtggctt tctcatcatc ttttaaaaga ggaaaaaccc ttgtatcgca
    11701 atttaaattt ttagctaaat tagctatggc gatatgattt gaagagcgga tttgagcagg
    11761 attttccaag gcttctccta gatctttgat ctcacttcca ctacttaaaa cccctacaat
    11821 aggttttata aacacactaa tgtgaaaaaa tccaagttca gctaaaagag ctatctcgct
    11881 ataatttaac cttgtgcctt ttttgagtaa aatttcatct tttttatagt tttctcctac
    11941 cgcacgcacg gcaaaagctt ggggaacttt tttttctata aaaagagtat tattttctat
    12001 gcgtatattt tcaacaggga ctaaagtatc gcttccttcg ctcatgagtg agcctgtaaa
    12061 ggtttttaca caagtgccat tttgtacgct aaattgtggc atagtacccg caggtgtgag
    12121 gcctaaaatt tttaaaggct tgtcttgatc ttcaaatttg atcgcataac catccatagc
    12181 cgaggttgga aattcaggct gatttttagg ggcttttata tcttgagcta aaatgcgtcc
    12241 taaacactct gtaagagcta ttttttcaat cttttcataa gttttgatat gagaatgtaa
    12301 aatttttaaa ctttcttcat aagacattag cattttttat ccttttaaaa gtcctgcacc
    12361 gcaaagcttg gttgatcttt ctttggcata aattctttct ttgtttatca catcatactt
    12421 ccaaatgggc gcacttgctt taaaatcttc aacaaattca ttaagaagtt taagtcctaa
    12481 ttttctttgt ttgcttaaaa ttcctgcaaa atacgagctt tcatgtatcg ctacatcgcc
    12541 tatagagtga gcaaaaagca agctaatacc atcaaaatct actctttttt gccactcatc
    12601 aaaccatttt tttaaaagcg attcataaat atcaaaacta agtgcctcaa tacctccttc
    12661 ttcacgcaca ataccacaaa aagtcagtaa agcaccgcag tttttatcct tggaaaattc
    12721 ataccattgg ctataaattt taggaatatc taaagagcct tgataaagtg taaaatgttt
    12781 catttagcct ccacaaactg gcggtaaaag tgctatttta tcaccatctt ttaacttggt
    12841 gttttcatta aaaatgattt catcatttaa agatacagca caaagttcta gccattcttt
    12901 taaactctca tctttttgca aaatttcttt taattctttt aaatttttta cttcaagttc
    12961 taaattttct ttatttatag ggcctaaaaa ttccactttt accattttat tcctttactt
    13021 ctaaatttcc catcattcct aaatcttcat gttctaaaat atggcaatga tacattctaa
    13081 gtcctttaaa atcttgtttc attttaagtc ttaactcttc attaggacgc acatttatag
    13141 tatctctgaa ggctctaaat tcggcttttt gaactttgcc attgagtttt gatgagatga
    13201 gttcaaattg cgtgccgtgt atgtggaaag gatgatccat gtgagatttg tttatcacta
    13261 tccagtcttc aactactcca agcttggagc ttaaatcaat gcgttttaaa tcatagcttt
    13321 tgccattgat taaaaacata gacgcaagag cgatttttaa ttcattttca ctttttccca
    13381 tcattccatg catttgcata tgatcttcac tcatgattat ttctttaaat tccttaggtt
    13441 cttctaaagg tttgaaaatt tttaaatttt ttggaagttc taatttttct ttttttaggt
    13501 taatattggc tagaaatagg gtattagatt cttcttttac catcatttta tccctatcat
    13561 aataagcact ttctagctta aaattcccat cttttggagc gtcgattaaa acttctacac
    13621 gagaagcagg acttaagaaa agttcttctt tataaatagc tttttctata agtccaccat
    13681 cagtaccaac aagtataaac ttagctcctt gtatgcgtaa atttaaatat cttgctgcag
    13741 tagcattata aatgcgtatg cgttcgtttg tggcgagttt gattttaggt ttaaattgtc
    13801 cattgatgag tacaaattct ccttctctac catttagcca atcatttagg ttgttgtttg
    13861 gaatttgagc gttttcatca agacgcaaat cgctaatcat caaatctttt tcttttaaat
    13921 gacttaaagc atcttttttt gctttgatca caaaagcccc tgctaaaccc ataaaaactt
    13981 gtttagaagc cgtataatga ggatgtggat gataccagta agttcctgcg ctatcttgag
    14041 gaatttcaaa acgatatatt ctttcttctc ctgctaagat aggatcatgt gggcttccat
    14101 cttgatcagg tggcacagga acgccatgcc aatgtatagt tgtagcttct ttgagtttgt
    14161 ttttgactaa aatttcaagt ttatctcctt caaaaacttc tatttttgga gcaggcacga
    14221 ggccattgta agtataaaat aaggtttttt tacctttgat aagctctata tgattttctt
    14281 tgatttctag ggtagcacga aaaatatttt tttctttact ttcatttttg agtaaaggca
    14341 aggcttttaa aatttctcct tgggggaatt gttttggatc taaaagcttt aaattttttg
    14401 gagcaaagtt tataaaagaa gtatctaagt catgatttat agaatgattt ttatgcatgg
    14461 agtgcatatc atgcatagga tttgcatagg ctacacccat acttgctaga gtgagtgcat
    14521 taaattttaa aaaatttctt ctattcatta gtttttcctt ttgcttgatt ttttgtatta
    14581 tagtcattat ttttttaact ttagtaaata tttattttga aaatttggtt taattttgtt
    14641 atgattttag caatttaatc aaggaaaaat aatgttttat gaaaaaattc aaaccccagc
    14701 ttatatttta gaagaagata aattaagaaa aaattgtgag cttttagcaa gtgttggcga
    14761 aaaaagtggt gctaaagtgc ttttagcttt aaaaggtttt gctttttcag gagcgatgaa
    14821 aattgttgga gaatacttaa aaggttgtac ttgtagcgga ctttgggaag caaaatttgc
    14881 taaagaatac atggataaag aaattcatac ttattcgcct gcttttaaag aagatgaaat
    14941 aggtgaaata gccagcttat ctcatcatat agtgtttaac tctttagctc aatttcataa
    15001 atttcaagct aaaacacaaa aaaattcctt aggtcttcgt tgtaatgttg aattttctct
    15061 agccccaaaa gaactttaca atccttgtgg aagatactca agacttggaa ttcgtgctaa
    15121 agattttgaa aatgtggatt taagtaccat agaaggactt cattttcacg cactttgcga
    15181 agaaagtgct ggtgctttag aagctgtttt aaaggttttt gaagagaaat ttggcaaatg
    15241 gatagggcaa atgaaatggg tgaattttgg aggaggacat cacatcacta aaaaaggcta
    15301 tgatgttgaa aagcttattg ctttgtgtaa aaatttcagt gataaatacg gtgtgcaagt
    15361 ttatcttgaa ccaggcgaag cggtgggttg gcaaacagga aatttggtgg ctagtgtagt
    15421 agatatcata gaaaatgaaa aacaaattgc tattttagat acttcaagcg aagcgcatat
    15481 gccagatact atcatcatgc cttatacaag tgaagtttta aatgctagaa ttttagccac
    15541 aagagaaaat gaaaaaattt cagacttaaa agaaagcgaa ttttcctatt tgcttactgg
    15601 aaatacttgt ttagcgggtg atgtaatggg agaatacgcc tttgataaaa agcttaaaat
    15661 cggcgataaa attgtttttt tagatcaaat tcattacacc attgtgaaaa acacaacttt
    15721 taatggtata agacttccaa atctcatgct tttaaatgca aaaaatgaac ttcaaatgat
    15781 aagagaattt tcttataagg attattcttt aagaaattag tattatttat aatttgcata
    15841 aaatgttaat tttactcgga agagaatcaa agatgtaaat tttatgcaaa gtattttatt
    15901 ttttcaaata taaaatcaac tcaaatatct aattttcaat actttggtat gattttttaa
    15961 tattttaaat ccttgtggaa ttttattgaa attcagtgat ttttaaatca aatagtatta
    16021 agataaatcg atttaaaaat cggctttaaa atgaatatta ggtatatttt gcataatatt
    16081 cattcaagca aaatttaaag ctatttttga aaattttgaa tgcatgggag ctttaatgga
    16141 tttggaaaaa ttaagattag ctagaagtct ttattatcaa tgtctaggag agctttttgt
    16201 tttttcattt tctgaagaaa gattgtcaaa attacaagag tatttaaaga caatgcaaga
    16261 atgtttattt gatgaaaatt taaaatcaaa ttttgatatc ttgcttaagc atttagatga
    16321 tgaaaattct atacaagcat tttttaaaga atatgatttg ctttttttaa gtcttaaaaa
    16381 tagcattcca acgacttttt cttacataga agaaggtttt gaaaattcaa atcctttact
    16441 ttgcgtgcgt caaattttag tcaaaagtaa aataagacgc aatgaaaaat tttttaaaga
    16501 aagtgaagat agtgttggat tttgtttatt gttgatgagt gaatttttaa ggcaaaatga
    16561 agatgattta gccaaagagc tttttgaaaa agtgatcaat aaaagcattg atgagttttt
    16621 aggcgatgtt ttcatgaata aaaatgcgaa tttatataag gaaattgcaa gtattgcatc
    16681 ggcttttatg gaatttgaaa gactttgctt tgaagtggaa aaacctgcaa aaataaattc
    16741 taaaaaagtg caaaacgatc tatcgcgttc agaattttta agaagagaag caaataaaca
    16801 aaggaggact cgtgaaaaat cgcagggaat ttcttaaaaa atccgctttt gccttagggg
    16861 ctgctggagt gcttggtagc acaactttag ctctagctaa agatgaagaa agaaaagatt
    16921 tagttaaagg taaaagtaag aaaaaagaag tgctttttca aagaagtgct aattgggaaa
    16981 attattatat aaaggctgag taatgtcaag tgtaggtgaa aatatcaagc ttacgcgtcg
    17041 ttcttttctt aaaatggcag cactttcaag cctagcaaca ccgttgcttg ctagaagtga
    17101 aactttaaga gaagcgagtg ctgatgagct taaagaagct tatgaaggta gtaaaaaagt
    17161 aaaaacagtt tgtacagcct gttctgtagg ctgtgggatt attgcagaag tgcaaaatgg
    17221 tgtttgggtg cgtcaagaaa tcgctcaaga tcatcctgtg agttcaggtg gacattgctg
    17281 caagggatct gatatgatcg atatggtgcg ttcacatgtg cgtttaaaat atcctatgaa
    17341 aaaagaaaat ggagaatgga aacgcataag ttatgagcaa gctttaagtg agatcggaga
    17401 aaaactagct gcttatcgta aagaaaatcc tgaaagtgtt atgtttttag gttctgcaaa
    17461 acttaataat gaacaagctt attatataag aaaatttgca gcattttttg gaacgaacaa
    17521 tgtagatcat caagctagaa tttgacacag cgcaacagtc gccggtgtgg cgaatacatt
    17581 tggttatggc gctatgacaa accatcttgg agacatccaa agaagtaaat gtatcattat
    17641 cattggagca aatccagcgg taaatcaccc tgtgggtttt agacatttct taaaagcaaa
    17701 agaaaaaggt gcaaagctta tcgttgtaga tcctagattt acaaaaagtg cagcaaaagc
    17761 ggatatttat gcaagaattc gtccaggaac tgacattgct ttcatgtatg gaatgttaaa
    17821 aatcattttt gatgaaggct tggaagatac aaaatatctt gatgaaagag tttttggaat
    17881 tgataaaatt cgtgaagaag cagcaaaatg gacagttgaa gaagtggaaa atgttacagg
    17941 gatctctaaa gaacttttgg tgcaaatcac tcacgaagta gctaaaaaca aaccaactac
    18001 gcttatttgg gctatgggtt taactcaaca tactgtagga acttcaaata cacgtttagc
    18061 acctattgtg caaatggtac ttggaaatat aggtaaattt ggtggtggag ttaatatctt
    18121 acgcggacac gataatgttc aaggtgcttc agatatggct tgtttgagcg aaaatttacc
    18181 aggttattat cctttaaatg aagcgacttg gagatactat gccaaaattt ggggtgtgga
    18241 ttatgagtgg cttttaggaa attttgtaag caaagattgg atgcataaaa ctgggctttc
    18301 acttgctaga tggtgggcag cggctttaaa tggaaaagat ggaaatgatg ctatcgataa
    18361 tgcaggaacg cctttaaaag ctttagtagt tatgggaaat ggtattactt cgactgcaca
    18421 acaagtaaaa gttaaagaag gtttggaagc tttagagctt ttagttttag ccgatccttt
    18481 tgtaaatgaa gcagggatta ttgcagaaag aaaagatgga atttatcttt tacctgcagc
    18541 aacacagttt gaaacaagcg gaagtgtaac agcaacaaat cgtagcggac aatggagatt
    18601 taaagttgta gatccacttt atgaaagcat ggaagatcaa gaaattttat ttgagcttgc
    18661 taaaaaatta ggtttttatg aagactttac caagacttta cgcgatgaaa aaggtgagat
    18721 tgtttggcct gaaaatgcaa caagagaaat tgcaaaagca gttagaagta tagggcttaa
    18781 tggttggagt cctgaaaggc ttaaaaagca tactttatac tgggataaat ttgatgaggt
    18841 aactttagaa ggaaaagacg aagttgctgg cgagtattac gggcttcctt ggccttgttg
    18901 gagtgataag cacccaggtt ctcctgtgct ttataatacc gacattgaag tagcaaaagg
    18961 tggtatgggc tttagaaaca attttggact tgaatatgaa ggagagagtt tacttgctaa
    19021 gaatgcacct ttaaattcac ctattgatac aggttatcca caaattacta aagataatat
    19081 agaaaaagtt ttaggtatta ctttaagtgc tcaagaaaaa gaaaaaatgg gatcaacttg
    19141 gtcttatgat gatagcaata tcatagcaac taaatgtata gaaaaaggca tagttcctta
    19201 tggaaatgct aaagctagag ctgtagtttg gacttttaaa gataaaattc cactccaccg
    19261 tgagccttta cattctccaa gaaacgattt ggtgcaaaaa tatccaagtt ttgaagatca
    19321 aaaagcgctt taccgcgtgg atactaaatt tgtttctgtg caacaagcta aggattattc
    19381 taaagaattc ccgcttaatc ttgttactgc aagacttgtg aatttaaatg gtgcaggtat
    19441 ggaaaataga gcatctatgt atctaacgcg tttaacacct gaaatgtttt gtgagatcaa
    19501 tcctgaatta gcaaaagagc aagacattaa agcaggagat atgatttggg tgcattctcc
    19561 agaaggtact aaaattcatg taagagtgaa ggttaatcca ggtgtagcaa aagatatgat
    19621 tttcttgcct ttccatttta caggagttat gcaaggcgtg gatttaacgc acaatttccc
    19681 agaaggaact aagccttatg caagcggaga aagtgctaat acggtaacaa attatggtta
    19741 tgatatcatg tgtcagattc cagagactaa aggtggactt tgtagaatca gtaaggatgg
    19801 aaaatgagta aggtaaattt tgcaaattta gaaaaagaac gcttgaaatt cttttgtgat
    19861 aatgagcgtt gtattgattg taatggttgc gcggtagctt gtgatgaagc acatgagctt
    19921 cctattcata ttcgccgccg ccgtgtgatt actttaaatg aaggaattca aggaaaagaa
    19981 gtttcaactt ctatttcttg tatgcattgt gatgatgctc cttgttctat cgtttgtcct
    20041 gtggattgtt tttacatccg tgctgatggt attgttttgc atgataaaga aatttgcata
    20101 ggttgtggat attgtcttta tgcttgtcct tttggtgcac cacaatttcc aaaagatagt
    20161 gtttttggaa ataaaggcat tatggataaa tgtactatgt gtgcaggtgg ccctgaagca
    20221 acgaattcag aaaaagaaag agaactttat ggtcaaaatc gtatcgcaga aggaaaagtc
    20281 cctgtatgtg ctgcgatgtg ttcgacaaaa gcacttttag taggtgaaag ttctaaaata
    20341 gaagagattt atcataatag acttatgaat agaaattatg gcattccaaa tccttcggaa
    20401 agtttggaat ggaagattgc ttacacagga aaggaacgct tatgagaaaa gtatttgtaa
    20461 cgcttttatt aagcgtagtg agtttatttg cttatggtag cgagagaatg ggacaagata
    20521 ctcaaatttg ggattttcat cgtattacaa atatcccaaa ttatgatact tttggcaaac
    20581 tttggacaac tttgcaaggt gaatatatag ctactatagc tttaatcgct gttattgcgg
    20641 tattgtctgc atttgctttg cattatatgg ttataggacc taagcaattt tcacacgatg
    20701 gaaagaaaat ttatgctttt acattatttg aaagactttt tcattttatc gcagcgattt
    20761 cttgggtgat tttagtgcca actggttttg tgatgatgtt tggagaagtt tttgggggtg
    20821 gagtttttgt aagggtttgt aaaaatttac acgcttttgc aacgattttg tttatcatct
    20881 ctataatccc tatgttttta tgctggatta aaagaatgct tcctgcaagt tatgatatca
    20941 gatggatgat gatagtaggt ggttatttaa gtaaaatcaa acgtcctgta cctgcaggta
    21001 agtttaattt tggtcaaaaa tcttggtatt atatagctgt atttggtgga tttttgatga
    21061 taattacagg tggatttatg tattttcttg attttaattc cacggcaatt caaggtcttt
    21121 ttggtttaac tcaaattgaa cttttgagaa tttcagctat agtgcataat ttcttgggta
    21181 tagtgtgtgc agtgtttttt ggtgtgcata tttatatggc agtatttgca atcaaaggta
    21241 gtatccattc tatgattagt ggttataaag aagaagaaga ggtttatatt ttacattctt
    21301 attggtataa agaattaagc aataaaaagc aaattgaacc tagtttttct tatgatccta
    21361 atgtgaaaat ttaatcttta accgctatgt tattacatag cggtagtttt aagctttttt
    21421 gaaataaata gaacgaattt tcttttataa gttgaatcta aaatctattt ttccatatat
    21481 aaatttgtta tttatgtttt tttgatataa tattatttaa agatatttaa aggataaggt
    21541 atggatccgt tatttacaac tcaaatttta aaatataaag gtgatgaatc ttttacatgc
    21601 aatgatactt tagtgcgtga aattaagctt gaaattttta ttaatgatga aaaagtaggt
    21661 gctttaatgg caactcctgt agatgaacag gcattagcaa taggatattt aatgagtgaa
    21721 aatatcattg cgaaagtaag cgatattgag agcatagaaa caaaagatga tggtatgagt
    21781 gtgcatatta aagcaaagat tgataaagaa aatttagcaa agcttaatgc tgaaggtgta
    21841 gttataagtg gttgcggtag agcacatact gccaatatcg atccagaagc tattgaagcg
    21901 agtaaaatta gttctgatgc aaaatttagc aaagatgaaa ttttaaaaca aatgagtact
    21961 ttttatactc aatgcgagct ttacgagaaa acaggctgtg tacatacggc taagcttttt
    22021 gtagatgaga aaactttttt tataggtgaa gatatagctc agcataatac catagataaa
    22081 gctttaggaa aagcgtgttt agctggggtt gatttaagtc aatgtttttt aatggttagt
    22141 ggaaggctaa gttctgaaat ggtagctaaa gcagttatgc ataaaattcc agtgcttgtt
    22201 tcacgcacgg ctcctacttg tttaggggtt atgatagcaa gaaaatttga tttaacgctt
    22261 tgtggttttg ctagagaaaa taagatcaat atttatagtg gagaatttag aattcatgga
    22321 taaaaatcaa gaaaaagaaa tcatctcata tatgagagaa ttgttaaata gcaatgaaaa
    22381 attagattgt ggtacggctt ttaaaattgc aaagaaattt aatataaata tagaaaaaat
    22441 cggacaatta gccgatgaaa atcacatgag aattgataat tgcgagttgg ggcaatttgg
    22501 acatttagat tttgaaaaag caaagattga agtgcttaaa aaaatagaac ctagtttaga
    22561 tgaaaagcgt agaatttttt gtaaagatgc aagagatatt gctaaagaag gttgtggact
    22621 taaaagtatg cgttcagctt taaaaactta taaggttgat gtaaagtatt gtcaacttgg
    22681 ttgttttaaa gaaaaaaaag gtaagcaatt tatagtaaga acaaaaactt ggattgaaaa
    22741 tgcggatgga gatttgcttt ttggtcgagg aaaaacagaa cttttagaac ttatcggaca
    22801 aacaggtagt ttattacatg cttctaaact tatggggatt aattataaaa aagcttggat
    22861 gcatttacaa accttacaaa aaaattctca agaaatttta gttagcacaa gacaaggacg
    22921 ctctaaagaa tcaggaacaa aacttactcc tagagctatg gaattgatgg aaaattactc
    22981 tattttgcaa aaagacatag aagaatacgc taataaacgc tttaaagaat tgtttttaaa
    23041 aggaaaaaaa taaatcttct atca
//
LOCUS       DAPIWQ010000008        22665 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.008, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000008 DAPIWQ010000000
VERSION     DAPIWQ010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22665
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.008"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..412)
                     /locus_tag="RJ267_000231"
     CDS             complement(<1..412)
                     /locus_tag="RJ267_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388118.1"
                     /translation="MKLQDFDFRIWDEDNEEFYKNPSIFKIKQIKGPHNVVLSSYSDN
                     ERINFEGYDRKFEVELFTRLYDKNGKKVYENDIVKAKNPFNYLEAKISIHKEGTFYLE
                     NKSGHYMGSLIYLVEDEGYTIEIIGNIHENPELLK"
     gene            complement(409..681)
                     /locus_tag="RJ267_000232"
     CDS             complement(409..681)
                     /locus_tag="RJ267_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388119.1"
                     /translation="MYVNVSIDASDLEDFYAHDLAELFEDLSTKEQEEFFGIIHKDIK
                     PLERIRAILSNLSNDEALKLLKELNNEFKSDEEWQKTIKSINGGNK"
     gene            complement(745..957)
                     /locus_tag="RJ267_000233"
     CDS             complement(745..957)
                     /locus_tag="RJ267_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002903050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388120.1"
                     /translation="MRELSLAAFKLLNSVFKTKTAHFNDFLELDFKNKPKLKKQSFKR
                     KKKMTSKQKIRFKERLQSKKIRLKRI"
     gene            complement(954..1439)
                     /locus_tag="RJ267_000234"
     CDS             complement(954..1439)
                     /locus_tag="RJ267_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host-nuclease inhibitor Gam family protein"
                     /protein_id="HDV7388121.1"
                     /translation="MQINSFEDVNLALKKVAELSVQIEKINGEVTLACNEIKESRAGE
                     IKVLSDELGYIEACITTFCENNKHEFAEKRSKEFTFGKIGYRLSKSVSLPRVKEKLES
                     LIKAFKSYGLNECITYKEELNKEAIVELEDSTLVKLGLKRVTKDNFRIEPKIESLEIE
                     K"
     gene            complement(1548..1886)
                     /locus_tag="RJ267_000235"
     CDS             complement(1548..1886)
                     /locus_tag="RJ267_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388122.1"
                     /translation="MPLVYIASPYKGLAVQESRRKSLAISVAEQECLKIIRECEDFTP
                     ISPILQFSYLEENKHRDKALQMGRELLKACDYIYLSKHKDAKNSTGMQEELALAKKLG
                     IKELTLELPL"
     gene            complement(1982..2167)
                     /locus_tag="RJ267_000236"
     CDS             complement(1982..2167)
                     /locus_tag="RJ267_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388123.1"
                     /translation="MTTMIKGEKADYSASLFEVKGAGIYFKKSGTFVDVLKGIYPDYI
                     AQKILNFHLNKKLNKSA"
     gene            complement(2151..2354)
                     /locus_tag="RJ267_000237"
     CDS             complement(2151..2354)
                     /locus_tag="RJ267_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002891557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma-70"
                     /protein_id="HDV7388124.1"
                     /translation="MTFEEIAKELGISLTRVHQIYKHAIKKLRSPKNKDKWLAIFETL
                     DLIEQEKTKRNNLIQGVDHDNND"
     gene            complement(2357..3280)
                     /locus_tag="RJ267_000238"
     CDS             complement(2357..3280)
                     /locus_tag="RJ267_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7388125.1"
                     /translation="MQLVELTKKFLSTQNISQNNLSDRLGINKSYMVGYMKKGSSYKY
                     ASKVESLLEKYIKSFVEEKSVKELQTPFIATKDAKAINVTIESAMSNREMGVIIGEAG
                     TGKSRAIKEYATKNGTRVVLFEATTETSKRMLLVGLENKLNVCFKGSLDDKIRGIASE
                     LARTSKVLIIDESEHLPFRALECLRRIYDFSNTALILVGTRKLKNNLTGIGRNDYNEY
                     GQLSSRIGAKWELKGLCYQNKEGLKNEDLKTLCSYFNIEDKKAIDLVFNLARGNFRKS
                     EKLLKRACEFADGKAVELKHIEAAASFLMLG"
     gene            complement(3350..5425)
                     /locus_tag="RJ267_000239"
     CDS             complement(3350..5425)
                     /locus_tag="RJ267_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDV7388126.1"
                     /translation="MVYFLETKEAAQAFNVSTGALRLAASRNSNKYEWLKVDNEKGGR
                     GGKKLLFKISKDKLLTAFNQELITKNTLIYDEKMQKVKLSEIITTDNLKTINNSLKTS
                     NLNLTESKINDDLAVLNLKFENLSDELKEDAKSKVKLLKQVEKYIEGGLTLKRALFLC
                     NVEWRNYSNWRSDYKKYGILGLVDTRGLHRKDKTKLSAWMQEYALREYRTFGAGGFNF
                     TELWWQIHKEAATKENYDFIGFDLGEVKPLFSVKTLQNFIKNYYKDKPLEHCIITQGL
                     DRAKSKFLPAQGNQRELYDMKNMCWQIDSSPADIIVRDDETLEPFRPHILSVVDVFSG
                     MGVATLVSKSNSLSLTRLLWKAIDKFGKPDMIKGDNGKDYLSKDFQSLLDGLNITYDA
                     AIAYAGEQKALVERRFGTLQHAGISKMHGHIGNNLAKREMIEQKTPKKDRRAKDEYGF
                     AKKTNQKLLLTFSEACEFLEAEVIKWNMSKVRRKKGIKTPLELWNSCDRAIVKISYEE
                     FLFNAGNKELRVVGKKGINFESRVYKSALMPSVGTKVKCVQNIDNIKELFIYDLSGNF
                     LCLALDESIAKLSKESYKMLKKGYESEVKAIKEVLKKDEIAVFTKLNIKQDLQDLQSA
                     FENSLVEAKEVHQKSLAKETLKTQRELEEIKNNANADELILNAKKEINNDESEFDMEA
                     FVEKKYFAG"
     gene            complement(5422..5622)
                     /locus_tag="RJ267_000240"
     CDS             complement(5422..5622)
                     /locus_tag="RJ267_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388127.1"
                     /translation="MIKAYFENNAINVKAFARTHNISYDILHRIIKGEITGERNTKGS
                     TKAVFKKLLELGIINELPQGLK"
     gene            5767..6399
                     /locus_tag="RJ267_000241"
     CDS             5767..6399
                     /locus_tag="RJ267_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDV7388128.1"
                     /translation="MTANDFKQIREKLGLTQEQLGNKLNLTRQQIINIEKGKTPISKK
                     YFDNISKLSKKFYIDKEENALNKDRNKQEINFYSIPKLNISASAGGGNELIGLEEYET
                     GEMLELSKAFFKTTPKNVKAIKVDGYSMIPMLLPDSWVIFEEIHEYQGDGLYILNFDN
                     QLMVKLLQLDPISKVLDIISVNKDYKSYSLDLKDSQVEIIIQGKVLRSII"
     gene            6541..7392
                     /locus_tag="RJ267_000242"
     CDS             6541..7392
                     /locus_tag="RJ267_000242"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388129.1"
                     /translation="MQKIDEVHKQRMQKINENFEKEKERKKDLKFNKFQTTSHEIFTI
                     KTPENEDVEVELACTAGLIQTSQIDYGEFVRKEFLYKCFPVTWNDFLKLNKYEKILAY
                     TVKDCNDIGLLKEVYEQMFKYLKWQSELPEYLKKDIRSRKRYLHEFSNPVQIKSKLSL
                     KAYRYYINFFLNEIPEGSYFPMQIMHRGDELSEALYNTYFLKDDESIDMYYPPNFYGD
                     TSSFDIVEPRFFNSREYYKNYKPFNRFDLKPHSDYDFNIPKYIVKHYLDMKTIVKEDE
                     HHKRIFC"
     gene            7510..7752
                     /locus_tag="RJ267_000243"
                     /pseudo
     CDS             7510..7752
                     /locus_tag="RJ267_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859749.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(7776..8702)
                     /locus_tag="RJ267_000244"
     CDS             complement(7776..8702)
                     /locus_tag="RJ267_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HDV7388130.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFVSIHGRTRKQLYSGKTDYESIANAKASVKIPVIANGDINTQNAKEVYKITKCDGLM
                     IGRASVGNPWIFYEIKSGKSVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYSK
                     GHKDASAFRDEVNRIDNTEKMRKKIEEFFSLA"
     gene            complement(8699..9685)
                     /locus_tag="RJ267_000245"
     CDS             complement(8699..9685)
                     /locus_tag="RJ267_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388131.1"
                     /translation="MKIKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMI
                     WLVIPLFIYMILAVLHIAFYGFLRYLKFKHFFKDAAKFEAYTQDLLLEKDLKTTFQTK
                     EFRSVAQLFKTIKTHEKIPHSNKINEILDLIDGLNKNEFFNLSKFKLENNNVLYLQNE
                     KNHLKNDANYAYNKLKNLNEIKDEFEEIAFNTLIEKASYEQIKNVKIPKKPSEVLTLI
                     KRFKEGNLELSVAEYEVLLSHNILSEKDYLNAAKLSTKLLNPDAILGIFNKIKNEKSE
                     ALRAYLYLLAEFGLLDELREQIHNDDKKFNDFKAFLALREKNIKIDLNQLIQ"
     gene            complement(9675..10037)
                     /gene="dksA"
                     /locus_tag="RJ267_000246"
     CDS             complement(9675..10037)
                     /gene="dksA"
                     /locus_tag="RJ267_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK suppressor DksA"
                     /protein_id="HDV7388132.1"
                     /translation="MKKNEIQNFKNILEERKKAILENLQSNSNEIEALHNSVPSDSVD
                     FSVIETGSQIDFAISTNLKEELIEIEDSLDKIKNGTYGICESCDDEIDSQRLKVKPHA
                     RYCITCRQIAEQGKKHEN"
     gene            complement(10049..10498)
                     /locus_tag="RJ267_000247"
     CDS             complement(10049..10498)
                     /locus_tag="RJ267_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HDV7388133.1"
                     /translation="MQVNIFCIQKSDEFKTCSEKYSKLISKYATLKEINVFNKKIALA
                     QNLNAIEAKKSYEEAFMPYKKGYCIALDEKGKDLTSIEFAKLIQDKNELSFFIGGAYG
                     LREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYHK"
     gene            complement(10500..11342)
                     /locus_tag="RJ267_000248"
     CDS             complement(10500..11342)
                     /locus_tag="RJ267_000248"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HDV7388134.1"
                     /translation="MNFADIFSKIRRQQPSVKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCNYHMRISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSSVISGECEINGLKTQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITSKTSLVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISILTDPTMGGVSASFAWLGDLII
                     AEPEALVGFAGARVIKQTIGADLPEGFQKAEFLLEHGLIDAIVERGEQKQYLSDVLKF
                     FSGK"
     gene            complement(11351..12073)
                     /locus_tag="RJ267_000249"
     CDS             complement(11351..12073)
                     /locus_tag="RJ267_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HDV7388135.1"
                     /translation="MKEFLDACLNANLQIRKYLNNIPQNDLKLCSKLGYDKNQGYELD
                     LKCEQIFIKYLSCFGQIFSEESGLIGKASPKQMILDPLDGSSNFVSKIPFYGTSIALM
                     EKDQAKSAFVCNLVSQEIFAFNNKQAFKSNLSDPKYSPLTPNLFSKIGIVEKISLYPE
                     LLDFLTKNQLKFRSLGATALSLAYASYFSFVLILGKTRIFDTAAALAIHQNLYIEKNE
                     NFLLLSQDKKIFDIILEFLKNN"
     gene            complement(12073..14292)
                     /gene="bamA"
                     /locus_tag="RJ267_000250"
     CDS             complement(12073..14292)
                     /gene="bamA"
                     /locus_tag="RJ267_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HDV7388136.1"
                     /translation="MKKHLISICALVAMANAATIKDIKFIGLNHLSNTSAINIAGLKI
                     GEEINPAKINTAILNLYKQNYFENIAVENNNGILEIIVTEKPTIAKVTITGIASNDRK
                     QVESILGIKRGTLLDEGNIKEAIERIKAYYEAKSYFDTIVEYKKKTLENTDGLELEFI
                     VNRGENIIIDNVHLSGAKKFSYSDIEPAVVNKEKEFMGWMWGRNDGKLKVFELSNDSS
                     RIADEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIKSISIENPLFDDKQ
                     NAQTVKDLRSSAGKTINIEDIRKDVKTIETQSADLGYAFVEVYPDIQKNDQTQEATVV
                     FKVIPHDKVYIRNVIISGNSRTVDRVIRRELYITEGNLYNRTDLSESKNALKRTSYFD
                     DVNIKEEKVDDTHIDLIVDVKEASTGAISGGIGYGSSDGILLNASLSDTNIFGSGIKS
                     SVSVDKSDDTLSGRISLVNPRVLDSQYSLGGTLYSNDYEWDNYSEKNYGFDITIGRQF
                     ARYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKSIKSSITPAITFNDTDDYYLPRSGI
                     IASTSLEYAGLGGDQEFISSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPIN
                     QRIYLGGIRSIRGFESRTVSPKNQWGDEIGGTIAFANSVELSFPLIDRIKLRGSVFFD
                     YGMIGRKNLDEIKRMSTGIGIEWITPIGPLQLVFAKPLNDKKGDDTNSFEFNLGTRF"
     gene            14369..15196
                     /locus_tag="RJ267_000251"
     CDS             14369..15196
                     /locus_tag="RJ267_000251"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HDV7388137.1"
                     /translation="MKIAIIGLGLMGGSLGLCLKENKLISCVYGMDLSKENEKDALQL
                     GLIHELIEFKDLALCDMIFVATPVDAIIEILQKLVDLPSNVTIIELGSTKRKIIESLP
                     KNLIKQTLFAHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLG
                     MKIVFMDSKAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPQMWESIFLQNKDNLLSSIDFFQQELERCKQMIQLDKNDELREWMKQANTLREIL"
     gene            15276..16649
                     /locus_tag="RJ267_000252"
     CDS             15276..16649
                     /locus_tag="RJ267_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HDV7388138.1"
                     /translation="MAKRKGKTYLSVLILVLIAILIFFISRLSIFEKNPPQILMPDVV
                     YTDLKKPILVHIKDDESSIKNVQIILHKDDNTSAMVIADEKISNLKDITLQVALPKFG
                     YKENVKSFVLEVIAKDSSFWNFFSGNEARKQIAVLVDNTAPKINIISNSYQIEQGGAG
                     AVVFKADDANLDKVYIETNKGKIFKATPYVKEGYYAALIAWDARDEEFRAFVIATDKA
                     GNISKERIRYYFVNRKYRVSNINLTDKFLDGKIENLANQYAPKDNNLNRYEKFKFVNE
                     TLRNSNEKLIHEITSKVPEEKIDNFDLNLFLPLKNGMKVADFADHRYYSYNGQFVSDS
                     YHMGLDLASVAQAPIISNNAGKVVFAAENGIYGLNLIVYHGFGVYSLYGHCSSKNVDL
                     DEMINKQSIIGKTGTSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNDGK
                     KIILGKN"
     gene            16649..17533
                     /locus_tag="RJ267_000253"
     CDS             16649..17533
                     /locus_tag="RJ267_000253"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HDV7388139.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ASYKASPENVINTQMATVLGDERGFISTIEHLMSAINAYGIDNVRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDAPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYTSYAGSHHLNHLLTKEVLKDKDAY
                     EIVSLEKTTQKAYEKVFA"
     gene            17572..17973
                     /locus_tag="RJ267_000254"
     CDS             17572..17973
                     /locus_tag="RJ267_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HDV7388140.1"
                     /translation="MIGIYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTSLIYAN
                     GPGSYMGIKISYVSLSTLSIVKNIPLFAVSAFELNGYKPISANKNFCFVYKEGEICLE
                     QNIPAEFFLPKNLQELKLNNDNLPFYFLDAI"
     gene            17982..18860
                     /locus_tag="RJ267_000255"
     CDS             17982..18860
                     /locus_tag="RJ267_000255"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HDV7388141.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSISIGGE
                     GSDNIFLKKNNIFVNIFYEIYEKLSGKKDNFRFIFQNNIPLSRGLGSSSAVIVGAIAS
                     AYYMSGFKVEKERILDEALIYENHPDNIAPATLGGFVCSLVEKNKVYSIKKEIDKDLA
                     AVVVIPNLAMSTEQSRQALAKNLSFNDAVFNLSHASFLTACFLEKKYEFLKFASQDKL
                     HEINRMKNLPELFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALAKKIQTKFKD
                     FRVQYLEFDDNGFEIC"
     gene            18885..19142
                     /locus_tag="RJ267_000256"
     CDS             18885..19142
                     /locus_tag="RJ267_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HDV7388142.1"
                     /translation="MKKHIPIRMCIVCKNRFEQNMLFRFKVVLGDIVPKAEHGRSGYL
                     CQNCIEREDKVLQKAFSKICKNLNTKITQQGLKEIFLNGKD"
     gene            19129..21744
                     /gene="infB"
                     /locus_tag="RJ267_000257"
     CDS             19129..21744
                     /gene="infB"
                     /locus_tag="RJ267_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HDV7388143.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAA
                     AIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEEKLKQEVKK
                     EELKTEKENAKEEEKQEIIDTHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKKEEVK
                     NSNDISINNEERLSLKTMFSNADESLKKKKKEKKSFVASKKESTEKMNFLDEHDFGDI
                     SLDDEDEVVLPDFSIKEQEKPQNINKKQPNFIRQAVGNSAGFGLEGGIQRRSRKKPSK
                     KIEKKEVEEVGSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDEDAIE
                     ILAAEFGIEINIINEADEFDYVKDYEEETDEKDLVTRAPVITIMGHVDHGKTSLLDYI
                     RKSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVV
                     AADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVEWGGS
                     YEFVGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAVATII
                     VQNGTLTVGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIA
                     VKSDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSL
                     EALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEVKERA
                     KDKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCM
                     VTEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVG
                     DYIESYKEVEEQASL"
     gene            21741..22103
                     /gene="rbfA"
                     /locus_tag="RJ267_000258"
     CDS             21741..22103
                     /gene="rbfA"
                     /locus_tag="RJ267_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HDV7388144.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            22093..22536
                     /gene="rimP"
                     /locus_tag="RJ267_000259"
     CDS             22093..22536
                     /gene="rimP"
                     /locus_tag="RJ267_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HDV7388145.1"
                     /translation="MNLEALCKEVNLELYDSELTSENGKKIYRVYVMKPLDEKGERRG
                     VNLDDCARLSEILSPIFDVEPPVSGEYFLEVSSAGLERKLSKIEHFAKSINELVKITT
                     GEKEKIEAKIISVEDENITLENLENKEKTTINFNDIKKARTFIQW"
BASE COUNT         7729 a         3330 c         3606 g         8000 t
ORIGIN      
        1 attttaaaag ttcagggttt tcgtggatgt tgccgatgat ttcaatggta tatccttcat
       61 cttcaactaa ataaattaaa gaacccatgt aatgcccact tttattctca agataaaaag
      121 tcccttcttt atgaatgcta atttttgctt ctaagtaatt gaatggattt ttagccttaa
      181 caatatcatt ttcatatact tttttaccat ttttgtcgta aagtcttgta aaaagctcaa
      241 cttcaaattt tctatcatat ccttcaaaat taattctttc gttgtcacta taactgctta
      301 aaacaacatt gtgtggacct tttatttgtt taattttaaa aattgatggg tttttataaa
      361 attcttcatt gtcctcatcc caaatcctaa aatcaaaatc ttgtagtttc atttgttacc
      421 tccatttata ctttttatag ttttttgcca ttcctcatcg cttttaaact cattattaag
      481 ttcttttaaa agtttaagtg cttcatcatt agacaaatta gaaagaatag ctcttattct
      541 ttctaatggc ttgatatcct tatggataat tccaaagaat tcctcttgct cttttgtgct
      601 taaatcttca aaaagttcag ccaaatcatg agcgtaaaaa tcttctaaat cactcgcatc
      661 tatgcttaca ttgacataca tttttaatcc ttttgtttta aattaagttt taaaaactta
      721 atcaaatccg ccttagcgga cttgttaaat tcttttaagt ctgatttttt tgctttgaag
      781 tcgttcttta aacctaattt tttgctttga agtcattttc ttttttcttt taaagctttg
      841 cttttttagc tttggcttat ttttaaaatc aagttctaaa aagtcattaa aatgagcggt
      901 ttttgtttta aaaacactat ttaaaagttt aaaagccgct aaggaaagct ctctcatttt
      961 tctatctcca agctttcaat ctttggttct attctaaaat tatcttttgt aaccctttta
     1021 agtccaagtt ttactaaagt gctatcttca agttctacta tagcttcttt gttgagttct
     1081 tctttgtaag tgatacactc attaagccca tagcttttaa aggctttaat taaactttct
     1141 agtttttctt ttacacgtgg taaagataca cttttactta agcgataacc aattttgcca
     1201 aaggtaaatt ccttagatct tttttcagca aattcatgct tattgttttc acaaaaagta
     1261 gtgatacaag cttctatata tccaagctca tcacttaaaa ctttaatctc tcctgcacgg
     1321 ctttctttga tttcattgca agctaaagtt acctctccat tgattttttc tatttgcaca
     1381 ctaagctctg ctactttttt aagtgcaaga tttacatctt caaaactatt tatttgcatt
     1441 tattctcctt taatttatat ttttcgattt gataatccca aaaaaccaca ccatatttta
     1501 aagacatggc atacttattt cttttcttga ctattcttaa accctttcta taagggcaac
     1561 tctaaagtta attctttaat tcctagcttt ttagctaagg ctaattcttc ttgcatacct
     1621 gttgaatttt tagcgtcttt gtgtttgcta agataaatat aatcacacgc ttttaaaagc
     1681 tctctcccca tttgtaaagc tttgtctctg tgtttattct cttccaaata gctaaattgt
     1741 agtatgggtg aaataggcgt aaaatcttca cattcacgta taatttttaa gcattcttgc
     1801 tcggcaacgc ttatggctaa tgatttgcgt ctgctttctt gcacagctaa gcctttataa
     1861 ggacttgcta tataaactaa tggcattgtt ctcctttttt gatgatttta gggttttacc
     1921 ctttttaagt cttcttaaaa aaagacttaa aaagaaaaaa cgcaattaaa gtgcttttaa
     1981 atcaagcact tttattcagc tttttattca aatgaaaatt aagaattttt tgtgcaatat
     2041 aatcaggata aattcctttt aaaacatcca caaaagtgcc gcttttttta aaataaatac
     2101 ccgcaccttt tacttcaaac aatgaagcac tatagtctgc tttttcgcct ttaatcattg
     2161 ttgtcatgat ctactccttg tattaaattg tttctttttg ttttttcttg ctctattaag
     2221 tctaaagttt caaagatagc aagccattta tctttatttt taggacttct taatttttta
     2281 atagcgtgtt tatagatttg atgaacacgc gtcaatgaaa tacccagttc ttttgctatc
     2341 tcttcaaagg tcatttttat cccaacatta aaaatgaagc tgcggcttct atgtgtttaa
     2401 gctcaaccgc ttttccatct gcaaattcac aagctctttt taaaagcttt tcgctttttc
     2461 taaaattgcc acgagctaag ttaaaaacca aatcaattgc ttttttatct tctatattaa
     2521 aataggagca aagagttttt aaatcttcat tttttaaacc ttctttgttt tggtagcaaa
     2581 gtccttttaa ttcccatttt gcaccaattc tagagcttag ctgtccatac tcgttataat
     2641 catttctgcc aatgcctgta agattgtttt taagttttct agtacctact aagattaaag
     2701 cagtatttga aaaatcatat atgcgtctta agcactccaa agcacgaaac ggcaaatgct
     2761 cactctcatc tataattaaa acctttgaag ttcttgctaa ctcgctagca atgcctctaa
     2821 tcttatcatc caaagaacct ttaaaacaca cattgagttt attttcaagc cccaccaaaa
     2881 gcattctttt actagtttct gttgtagctt caaaaagcac cactcttgtt ccatttttag
     2941 tggcatattc tttaatggct ctgctttttc cagtccccgc ttcgccaata atcactccca
     3001 tttcgcgatt gctcatggca ctttcaatgg ttacattaat tgcttttgca tctttagtgg
     3061 caataaaagg tgtttgaagc tctttcacgc ttttttcttc cacaaagctt ttaatgtatt
     3121 tttcaagtaa agactctact tttgaagcgt atttatagct acttcctttt ttcatatagc
     3181 ccaccatata gcttttatta atccctaaac gatcggagag attgttttga gagatgtttt
     3241 gggtgcttaa aaacttttta gtaagttcta ctaattgcat tttttatcct tttgtttttt
     3301 atgagtaaaa actctttaaa acttgaatta atcaagcttt aaacaatttt taaccagcaa
     3361 aatatttctt ttcgacaaaa gcttccatgt caaactcgct ttcatcgtta tttatttctt
     3421 ttttagcgtt taaaataagc tcatccgcat tagcattgtt tttaatctct tctaattctc
     3481 tttgagtttt taaagtttct tttgcaaggg atttttgatg cacctcttta gcttctacga
     3541 gtgagttttc aaaagcactt tgtaaatctt gtaagtcttg tttaatatta agtttagtaa
     3601 agacggcaat ctcatctttt ttaagcactt ctttaatcgc tttaacttca ctttcataac
     3661 cttttttaag cattttatag ctttctttac taagtttagc gatactttca tcaagtgcta
     3721 gacaaaggaa gtttccgctt aaatcataaa tgaaaagctc tttaatatta tcgatatttt
     3781 gtacacattt aacttttgtg ccaacacttg gcattaaagc acttttataa actctacttt
     3841 caaagttaat gcctttttta cccacgaccc taagttcttt atttccagcg ttaaacaaaa
     3901 attcttcata agagattttt acaatagctc tatcgcacga gttccaaagc tcaagtggag
     3961 ttttaatgcc ttttttacga cgaactttgc tcatgttcca tttaatcact tcagcttcta
     4021 aaaactcaca agcttcgcta aaggtaagaa gtaatttttg attagttttt ttagcaaagc
     4081 cgtattcatc tttagcacgt ctatcttttt taggagtttt ttgctctatc atttctcttt
     4141 tggcaagatt attgccaata tgtccatgca ttttagaaat tcctgcatgt tgaagtgtcc
     4201 caaagcgtct ttcaactaaa gctttttgtt ctcctgcata agcaatagct gcatcatagg
     4261 taatattaag cccatcaagc aagctttgaa aatctttaga aagataatct tttccattat
     4321 cccctttaat catatcaggc ttaccaaact tatctatagc tttccataaa agacgcgtca
     4381 aacttaaaga atttgattta cttactaaag tagccacacc cataccgcta aagacatcaa
     4441 cgacacttaa gatatgaggg cggaaaggct ctaaggtttc atcatctctt actataatat
     4501 cagctgggga actatcgatt tgccaacaca tgtttttcat gtcatatagc tctctttgat
     4561 ttccttgtgc agggagaaac ttagattttg cacgatctaa gccttgagta ataatgcaat
     4621 gttctaatgg tttatctttg tagtagtttt taataaagtt ttgcaaggtt tttacactaa
     4681 agagtggctt tacttcccct aagtcaaaac ctataaagtc ataattttct ttagtagctg
     4741 cttctttatg aatttgccac caaagctcag tgaaattaaa tccacctgct ccaaaggtgc
     4801 gatactctct taaggcatat tcttgcatcc aagcactaag tttagtttta tctttgcggt
     4861 gaagtccgcg agtgtcgact aagcctagaa tgccatactt tttatagtct gaacgccagt
     4921 tagaataatt tctccattct acattacata aaaacaatgc tcttttgagt gtaagaccac
     4981 cttcaatata tttttctact tgtttaagta attttacttt acttttcgca tcttctttaa
     5041 gttcatcgct taaattttca aattttaaat ttaaaacagc caaatcatca tttatttttg
     5101 actctgttaa atttaaatta ctagttttta aactattatt tatagttttt aaattatcgg
     5161 tagtaataat ttcgctcaat ttaacttttt gcattttttc atcataaatt aaagtatttt
     5221 tagtgattaa ttcttggtta aaggcggtta aaagcttatc tttgcttatt ttaaatagta
     5281 gttttttgcc acccctgccg cctttttcat tatctacttt taaccactcg tatttatttg
     5341 agtttctact tgctgcaagt ctcaaagcac ctgtgcttac attaaaagct tgtgcagctt
     5401 ctttggtttc taagaaatac actattttaa tccttgcgga agctcattaa tgatgccgag
     5461 ctctaagagc tttttaaata ccgcttttgt actaccctta gtatttcttt cacctgtaat
     5521 ttcgcctttg ataattctgt gtaaaatatc gtagctaatg ttgtgagttc tagcaaaagc
     5581 ttttacatta atagcattgt tttcaaaata tgctttaatc attttttctc cttcaatact
     5641 tcaattttaa ttgaagttta tttttaattg tgataaaatt tcaattttaa ttgaagtatt
     5701 atagtaaaaa attttacatt agtcaataaa atatgttaaa tattttactt tttataaagg
     5761 taatatatga ccgcaaatga ttttaaacaa ataagagaaa aattaggact tacacaggaa
     5821 caattaggta ataagcttaa tttaacaaga cagcaaatta ttaatataga aaaaggcaaa
     5881 acacctatta gcaaaaaata ttttgataat ataagcaagt taagtaaaaa attttacatt
     5941 gataaagagg aaaatgcact aaataaagat agaaataaac aagaaattaa tttttattct
     6001 ataccaaaac ttaatatttc agcctctgct ggtggaggta atgagttgat aggattagag
     6061 gaatacgaaa caggtgaaat gcttgaactt agtaaagcct tttttaaaac aactccaaaa
     6121 aatgtaaaag ctatcaaagt tgatggatac tctatgattc caatgctttt acctgatagt
     6181 tgggttatat ttgaagaaat acacgagtat caaggagatg gactatacat tttaaacttt
     6241 gataatcaac ttatggttaa acttttgcaa ttagatccaa taagtaaagt tttagatatt
     6301 attagtgtaa ataaggatta taaaagctat agtttggact taaaagactc acaagttgaa
     6361 atcattatac agggtaaggt tttgcgttct attatataat ttaaaggaaa taaagtgaat
     6421 atagtattat cgatattagc agttattttt atttttctct tatgtaatta tttatataga
     6481 aaaataaaag gaataccaaa taagccggta aaagaaattt ggaatgaata taagcaggaa
     6541 atgcaaaaaa ttgatgaagt acataaacaa agaatgcaaa aaataaatga aaattttgaa
     6601 aaagaaaaag agcgaaaaaa ggacttgaaa tttaacaaat ttcaaacaac ttcacatgaa
     6661 atttttacca taaaaactcc agagaatgaa gatgttgagg ttgaattagc ttgcacggct
     6721 ggattaattc aaactagcca aattgattat ggagagtttg ttaggaaaga atttttatac
     6781 aaatgttttc cagtaacttg gaacgatttt ttaaagctta acaagtatga aaaaatattg
     6841 gcatatacag ttaaagattg taatgatatt ggattgttaa aagaggttta tgagcaaatg
     6901 ttcaaatatt taaaatggca aagtgagctt cctgaatatc ttaaaaaaga tatacgatct
     6961 agaaaaagat atttacacga attttcaaat cccgttcaaa taaaaagcaa attaagctta
     7021 aaggcttatc gctactatat caacttcttt ttaaatgaaa taccagaagg aagctatttt
     7081 cctatgcaaa taatgcatag gggtgatgag ttgagcgaag ctttatataa tacttatttt
     7141 ttaaaagatg atgaaagtat agatatgtat tatccaccaa atttttatgg agacacatca
     7201 agttttgaca tagtagaacc tagatttttt aacagtaggg aatattataa aaattacaaa
     7261 ccttttaatc gttttgattt aaagccacac tctgattacg actttaatat tccaaaatat
     7321 atagtaaagc attatttgga tatgaaaacc attgttaaag aagatgaaca tcataaacga
     7381 attttttgtt agttttattt taataaagtt atattttaag tttaaggttt gtagaaaaat
     7441 aaaatttcca cttttatgga agttttattt ttccaaatgg aaattttatt tttccgccga
     7501 caaaaactgc aagaaacttc agaagaagac aaaaaagctt tcaaacctat acaagtagaa
     7561 agtaaaagcg aaacctacaa agatgataat aaaatgaatg agcttttaag aaaactacta
     7621 gaaactaaat ttggcacaag cgatgagcta gaaattcttt ttggtatgaa ttttagcaat
     7681 gataatgcag gggaatttaa taaaattctt tctcaaaaca cttcagcaaa aattatagat
     7741 attaaggctt aaggtttttt aattataaaa atcgatcaag ctaaactaaa aaattcttct
     7801 attttttttc gcattttttc tgtattgtcg atacgattga cttcatctct aaaggctgaa
     7861 gcgtctttgt gtcctttaga atactcgtgt aaatgcttgc gaaatatact tacgccttga
     7921 tctttgtagt gttttatcat ttcatcaaaa tgagtgagta tgatttcttt tttgagtttt
     7981 tcatctacac ttttaccgct tttgatttca taaaatatcc aaggatttcc tacgctcgca
     8041 cgccctatca tgagtccatc acattttgtg attttataaa cttctttagc gttttgtgtg
     8101 ttaatatcgc catttgcaat cacaggaatt ttcacgctcg ctttagcatt ggcaatggat
     8161 tcataatcgg tttttccgct ataaagctgt tttcttgtgc gtccatgaat acttacaaaa
     8221 tccaccccca agctttcgca aattttagcc attttttcag gatatttttc attaaatcct
     8281 agtcgaaatt tcacacttgt aaggcttttt ttattgtttt ctttaatcac tcctacaaga
     8341 tttttaaaaa gctctaaatt ttctagcaaa gcactgccag cacattgttt aacaacttta
     8401 tttacagggc aaccgcaatt aaaatcgatc ccatctacaa aatccatttc atttagcatt
     8461 tgcactgctt tttttagcac ttctttatct ccacctgcaa tttggactat ataaggattt
     8521 tctaattcag ctctttctag catatgtaaa gttttagaac tttcataaac taaggcatta
     8581 gaacttatca tttcacttat ggtaatatca gcaccaaatt tttttactac attacgaaaa
     8641 ggcagatctg aaaaacctgc cataggggct aaaaacaggg gttttttgct aaaatctatc
     8701 attgtatgag ttgatttaga tcgattttga tatttttttc acgcaaggct aaaaaggctt
     8761 taaaatcatt aaatttttta tcatcattgt gaatttgttc tcttaactca tctaaaagtc
     8821 caaattcagc caaaagatat aaatatgctc ttaaagcttc gcttttttca tttttaattt
     8881 tgttaaaaat tcctaaaata gcatcaggat ttaaaagttt agtacttagt tttgctgcgt
     8941 taagatagtc tttttcgctt aatatgttgt gtgaaagtaa aacttcatat tctgctacac
     9001 taagttctaa atttccttct ttaaaacgct tgataagtgt gagaacttca gaaggctttt
     9061 tagggatttt tacattttta atttgctcat aactagcttt ttctataaga gtgttaaaag
     9121 caatttcttc aaattcatct ttgatttcat taaggttttt aagtttgtta taggcataat
     9181 ttgcatcatt tttgagatga tttttttcat tttgcaaata taaaacattg ttattttcga
     9241 gtttaaattt gctaaggtta aaaaattcgt ttttatttaa accatcaata agatctaaaa
     9301 tttcattgat tttatttgag tgtggaattt tttcatgtgt ttttatggtt ttaaaaagtt
     9361 gtgctacaga tctaaattct tttgtttgaa aagtggtttt aagatctttt tcaaggagta
     9421 aatcttgagt ataagcttca aatttagctg catctttaaa aaaatgctta aattttaaat
     9481 aacgcaaaaa tccataaaat gctatgtgta aaacggctaa aatcatataa ataaataaag
     9541 gaataacaag ccatatcata ataggtagtt caaaggtata agtgctgata tttagagtat
     9601 agcttcctag ttctagatgc caagcaaagg caaaaataag tgctatataa ataaaacttg
     9661 caagtaagaa gagtttaatt ttcatgtttt tttccttgtt ctgcaatttg acggcaagtg
     9721 atacaatatc ttgcgtgagg tttgactttt agtctttgag agtcgatttc atcatcgcaa
     9781 gattcgcaaa ttccataagt gccgtttttg attttatcta aagaatcttc gatttctata
     9841 agttcttctt tgagattggt gctgatagca aagtcaattt gagagcctgt ttctatgaca
     9901 gaaaaatcta cactatcgct tgggacgcta ttgtgaagag cttcgatttc atttgaattg
     9961 ctttgcaaat tttctaagat ggcttttttt ctttcttcta aaatattttt gaaattttgt
    10021 atttcatttt ttttcatttt aaaactttct atttgtgata agggtgattg ttgttgatgc
    10081 aaaatgcacg ataaatttgt tctaaaagta aggttttaac aaattgatgt gctaaagtaa
    10141 gtttgcttaa tgatagtcta aaatccaaac tttgattaaa ttcttctctt aaaccataag
    10201 cacctcctat aaaaaaactt aattcatttt tatcttggat gagttttgca aattctatac
    10261 ttgtaagatc tttccctttt tcatcaagag cgatacaata gcctttttta taaggcataa
    10321 aagcttcttc atagcttttt tttgcttcta tggcatttaa attttgagct aaggctattt
    10381 ttttattaaa aacatttatt tcttttaaag tggcgtattt ggagatgagt ttagagtatt
    10441 tctcactaca agttttaaat tcatcacttt tttgaataca aaagatatta acttgcaaat
    10501 tattttccac taaaaaattt tagtacatcg ctaagatatt gtttttgttc tcctctttca
    10561 actatggcat ctataagtcc atgttctaac aagaactctg ctttttgaaa accttcaggt
    10621 aaatctgctc ctatagtttg tttaataact cttgcgccag caaaacctac taaagcttca
    10681 ggttcagcga tgattaaatc tccaagccaa gcaaaagaag cacttactcc acccatagta
    10741 ggatcggtta aaatgctaat ataaggaagt ttttctttgc taagaagttt aagtgcagca
    10801 ctagttttgc tcatttgcat caaagaataa gtactttctt gcattctagc tccaccgctt
    10861 gcacttacga tgacaagaga agttttgctt gtgatagctc tttgtatagc tctaacaatt
    10921 ttttctcctt caacagaacc taaagatccg cccataaaag aaaaatcaaa tacaacaagt
    10981 tgggttttta aaccattgat ttcacattct ccactgatga cagaactttt tctacctgtt
    11041 ttactttcac cttcgctaag gcgtttttta taggatttgc tatcaacaaa ttttaaagga
    11101 tctatagctt ctaaatttgc atcatactca ataaaactgc cttcatcgct taaaagttta
    11161 atacgttcat cagctgaaat tctcatgtga taattgcatt taggacaaac attaaaacaa
    11221 gattctattt ctttataata catcaaagca tgacaacttt ggcactttac ccagtgattt
    11281 ggcgcttctt taacgctagg ttgttgtctt cttatttttg aaaaaatatc tgcaaaattc
    11341 atatattcac ctaattattt tttaaaaatt ctaagattat atcaaaaatt tttttgtctt
    11401 ggcttaggag aaggaaattt tcattttttt ctatatataa attttgatga attgctaaag
    11461 cagctgctgt atcaaaaatt cgtgtttttc caagaattaa tacaaaacta aaatacgaag
    11521 cataagcaag acttaaggct gttgcaccca aagagcgaaa ttttaattga ttttttgtta
    11581 aaaaatcgag aagttctgga taaagtgaaa ttttttcaac tatacctatt ttagaaaata
    11641 gattaggtgt taagggtgag tattttggat cggaaagatt ggatttaaaa gcttgtttgt
    11701 tattaaaagc aaaaatttct tgactgacaa gattgcaaac aaaagcactt tttgcctgat
    11761 ctttttccat aagagctata gaagttccat aaaatggtat tttagaaaca aaatttgaac
    11821 ttccatccaa aggatcaaga atcatttgtt ttgggctagc ttttccgatc aatccgcttt
    11881 cttcagaaaa aatttgtcca aaacaactaa gatattttat gaaaatttgt tcacatttta
    11941 agtcaagctc atagccttga tttttatcat agcctaattt agagcaaagt ttaagatcat
    12001 tttgtgggat attgtttaga tacttgcgta tttgcaaatt tgcattcaag caagcatcta
    12061 aaaattcttt cattaaaagc gtgttccaag attaaattca aaactattag tatcatcacc
    12121 ttttttatca ttaagaggtt tggcaaatac aagttgtaaa ggtccaatag gtgtaatcca
    12181 ttcaatgcct atacctgtac tcattctttt tatttcatct aaatttttac gccctatcat
    12241 accataatca aaaaacacgc taccacgaag tttgattcta tcaatcaaag gaaaactaag
    12301 ttctacggaa ttggcaaaag ctatggttcc gcctatttca tctccccatt gatttttagg
    12361 acttactgtt ctgctttcaa aaccgcgtat cgatctaata ccacctaaat aaattctttg
    12421 gttaattggt aaataacctt catcccatac tttataaaaa ctcgctttat agcgataaat
    12481 aagatcatat cctatatagt cttgcaaacc ttgataaaag ttaaatttag agcttgatga
    12541 aataaattct tgatctccgc caagtccagc gtattctaaa ctagttgaag caataatacc
    12601 tgatcgtggc agataataat catctgtatc gttaaaggtg attgctggag ttatagagct
    12661 tttaatactt ttgccaagtt catatcctgt tcttaaaaga gttggactta agtgatatat
    12721 atcgctttgt tcaagattat aagttaagct tacattatag tatcttgcaa attggcgtcc
    12781 aattgttata tcaaagccgt aatttttttc tgaataatta tcccattcat agtcatttga
    12841 ataaagtgtt ccacccagac tatattgact atcaagaacg cgtggattta cgagactaat
    12901 ccttcccgat aaagtatcat cgcttttatc tacgcttaca gagcttttta ttcctgaacc
    12961 aaagatattt gtatccgata aagaagcgtt aagcaaaata ccatcgcttg atccatagcc
    13021 aatgcctcca gaaatagctc ctgtagaagc ttctttaaca tcaacaatca aatcaatatg
    13081 tgtatcatca actttttctt ctttgatatt tacatcgtca aaataagaag ttctttttaa
    13141 agcatttttt gactcgctta agtctgttct attgtataaa ttaccttctg ttatatataa
    13201 ttctcggcgt atgacgcgat ctacggtgcg tgaatttcct gaaataataa catttcttat
    13261 ataaacttta tcgtgaggga ttactttaaa tacaacggtg gcttcttgag tttgatcatt
    13321 tttttgaata tcaggataga cttctacaaa cgcataaccc aaatcagcac tttgtgtttc
    13381 tatggtttta acatcttttc taatgtcttc gatattgata gttttgccag cgcttgatct
    13441 taaatctttt acggtttgtg cattttgctt atcatcaaat aaaggatttt ctatgcttat
    13501 acttttaatt ttataaggct ttccttcttt gataaaataa gtcaaatttg cttgataagt
    13561 atctgtgtag gttttaagat aaggggagga tacttgaaca tctaaatatc cttttttcat
    13621 atattcatca gcaattcttg aactatcgtt actaagttca aaaactttta attttccatc
    13681 attgcgtccc cacatccatc ccataaattc tttttctttg ttaacaacag caggttctat
    13741 atcagaatat gaaaatttct ttgctccact taaatgaaca ttatcaataa tgatattttc
    13801 accacgattt actataaatt caagctctag tccatcagta ttttctaaag tctttttttt
    13861 gtattctaca atagtatcaa aataactttt tgcttcataa taagctttaa tgcgttcaat
    13921 agcttctttt atatttcctt catcaagtag tgtacctctt ttaatcccta aaatactttc
    13981 aacttgtttt ctatcatttg aagctatacc tgtgatagta acctttgcta tagttggttt
    14041 ttcagtaact ataatttcca aaattccatt gttgttttct actgcaatat tttcgaaata
    14101 attttgttta taaagattaa gaatagcagt gttgattttt gcaggattta tttcctcgcc
    14161 tattttaagc cccgcgatat ttatagcgct tgtgttcgat aaatgattta atccgataaa
    14221 tttaatatct ttaatggttg ctgcattggc catagcaact aaagcacaaa tactaataag
    14281 atgttttttc attgattttt tacctaaagc tttattaaaa gctgtataat agcaaaaaaa
    14341 atttaacaaa aaaactaagg tagaaagtat gaaaatagca attatagggc ttgggcttat
    14401 gggtggatct ttagggcttt gtttgaaaga aaataagctt atttcttgtg tttatggtat
    14461 ggatttaagc aaagaaaatg aaaaagatgc cctgcaatta ggtcttattc atgagcttat
    14521 agaatttaaa gatttagctt tatgtgatat gatttttgtc gcaactcctg ttgatgctat
    14581 tatagaaatt ttgcaaaagt tagttgattt gccttctaat gtaacaatta tagagcttgg
    14641 aagtacaaaa agaaaaatta tagaaagttt gcctaagaat ttaatcaaac aaactctttt
    14701 tgctcatcct atgacaggaa ctgaaaattc aggtccaaaa gcagctttta aagagcttta
    14761 taaagatgca gtttgtgttc tttgtgatag tgaaatagct gatgatttac atcaaaaaag
    14821 agcggtagaa attttttctc atttagggat gaaaattgtt tttatggata gtaaagccca
    14881 tgatcatcat gctgctatta tttctcattt gcctcatgtt ataagttttt ctttggcaaa
    14941 ttttgtaatg aaggaagaag ataaaagaaa tattgttcat ttagccggag gatcttttaa
    15001 aggtatgagc agaattgcca aatcatcgcc acaaatgtgg gaaagtattt ttttacaaaa
    15061 taaagataac ttattaagtt ctattgattt ttttcaacaa gaattagaga gatgtaaaca
    15121 aatgatacaa ttagacaaaa acgatgaatt aagagaatgg atgaaacagg ctaataccct
    15181 aagagaaatt ttataaattt gctagatatt tactgaaaat ataatagaat ttatattaaa
    15241 agcaacaaaa acattgaaaa tttttaagga aggttatggc aaaaagaaaa ggcaaaactt
    15301 atttatctgt tttaatttta gttttaatag caattttgat tttttttatt tcaagattaa
    15361 gtatttttga aaaaaatcct cctcaaattt taatgccaga tgttgtatat actgatctta
    15421 aaaaacctat tttagtgcat attaaagatg atgaaagttc tatcaaaaac gtacaaatta
    15481 tattgcataa agacgacaat actagtgcaa tggttatagc agatgaaaag atttctaatt
    15541 taaaagatat taccttacaa gttgctttgc caaaatttgg ttacaaagaa aatgtaaaat
    15601 cttttgtttt ggaggtgata gctaaagatt ctagtttttg gaattttttt agtggcaatg
    15661 aagcaagaaa acaaattgcg gtattagtag ataatacggc tccaaaaatc aatatcataa
    15721 gcaattctta ccaaatcgag caaggtggtg ctggggcagt tgtttttaag gctgatgatg
    15781 ctaatttaga taaggtgtat atagaaacaa ataaaggtaa aatctttaaa gccacacctt
    15841 atgtaaaaga aggatattat gcggctttga ttgcttggga tgcaagagat gaggaatttc
    15901 gtgcatttgt tatcgctacg gataaagcgg gcaatatttc aaaagaacgt ataaggtatt
    15961 attttgttaa tcgtaaatat cgtgtttcaa atatcaatct aacggataaa tttttagatg
    16021 gaaagattga gaatttagca aatcagtacg ctccaaaaga taataatctc aatcgttatg
    16081 aaaaatttaa gtttgtcaat gaaactttaa gaaatagcaa tgaaaaactt atccatgaaa
    16141 tcacttcaaa agtacctgag gaaaaaattg ataattttga tttgaattta tttttacctc
    16201 ttaaaaatgg tatgaaagta gcggattttg ctgatcatag gtattattct tataatgggc
    16261 aatttgtgag tgattcttat catatggggc ttgatctagc aagcgtagca caagctccta
    16321 tcataagtaa taacgcaggc aaggttgttt ttgctgctga aaatggaatt tatggtttaa
    16381 atttaattgt ttatcatggt tttggagtat atagtcttta tgggcactgt tcttctaaaa
    16441 atgttgattt agatgaaatg attaataaac aaagcattat aggcaaaaca ggaacaagtg
    16501 gtttagcctt aggcgatcat ttgcattttg gagttttggt tcaaggggtt gaaacgcgtc
    16561 ctgaacaatg gcaagataaa aaatggatag aaaataatat ttacaatgtt ttaaatgatg
    16621 gtaaaaagat aattttagga aaaaattaat gaaacaatta actttagcaa aaactgtcaa
    16681 aggcgtaggt ataggacttc ataagggtga acccatagaa attactttag agcctttaga
    16741 agcaaatagt ggtatagtat tttttagaag tgatcttaat gcaagctata aggcaagtcc
    16801 tgaaaatgtg atcaatactc aaatggcaac tgttttagga gatgaaagag ggtttatttc
    16861 tacaatagag catttaatga gtgcgattaa tgcttatgga atcgataatg tacgcatagt
    16921 tttaaatgca aatgaagctc ctgttatgga tggatcaagt attagttttt gtatgatgct
    16981 tgatgaagca ggggtaaaag aacttgatgc gcctaaaaaa attatggtaa ttaaaaagcc
    17041 tatagaagta agagatggta ataaatttgt gcgtttaact cctactaaag aaccccgtat
    17101 taattacaca attaaatttg acaatgctgt tataggtgaa caaagttaca attttgaatt
    17161 cagcaaaaaa aattatatag aaaacatagc aagagctaga acttttggtt ttttaaaaga
    17221 tgttcaagct cttaggagta tgaatttagc actaggtgga agtttagaaa atactatagt
    17281 ggtagatgaa aatcgtattt taaatcctga aggtttgcgt ttcaaagatg agtttgtaag
    17341 acataaaatt ttagatgcaa ttggagattt aaccttactt ggatatcgtg tttttgggga
    17401 ttatacttca tatgctggga gtcatcattt aaatcattta cttactaaag aagttttaaa
    17461 agataaagat gcttatgaaa ttgtaagcct tgaaaaaaca acccaaaaag cttatgaaaa
    17521 ggtatttgca taaaaacttc tcttttactt aatactttat ctaagccttt aatgatcgga
    17581 atttatcaag atgataaact tataaaaact tataaaagtg aagaaaaagc aagcgaattt
    17641 ttaccaaaaa ttttagatga attgcttaaa gagtatgatt ttacaagttt aatctatgct
    17701 aatggtccag gttcttatat ggggattaaa atttcttatg taagtttgag tactttaagt
    17761 atagtaaaaa atattccttt atttgcggtg agtgcttttg aattaaatgg ctataaaccc
    17821 ataagtgcaa ataaaaattt ttgttttgta tataaggaag gtgaaatttg tttagagcaa
    17881 aatatcccag cagagttttt tttaccaaaa aatttacaag agcttaaact aaataatgat
    17941 aatcttccct tttatttttt agatgcaatt taggatgaaa tttgaaaatt ttagttccag
    18001 ctacgagtgc gaatttaggg ccaggttttg attgtttagg acttagttta aagcttttta
    18061 atgaaactca aatccaaaaa tcaggtgttt ttagcattag tattggaggc gagggaagtg
    18121 ataatatttt tcttaaaaaa aacaatatat ttgtaaatat tttttatgaa atttatgaaa
    18181 aactaagcgg aaaaaaagat aattttcgtt ttatttttca aaataacatt cctctttcaa
    18241 gaggattagg aagctcttca gctgtgattg ttggagctat tgccagtgct tattatatga
    18301 gtggatttaa ggtagaaaaa gaacgtattt tagatgaagc tttaatttat gaaaaccatc
    18361 cagataatat cgctccagct actcttggtg gttttgtgtg ttctttggtt gaaaaaaata
    18421 aagtttatag tatcaaaaaa gagattgata aagatttagc tgctgtggtt gtgatcccaa
    18481 atttggcaat gagcacggaa caatcacgcc aagctttggc caaaaattta agttttaatg
    18541 atgcggtttt caacctttct catgcttcat ttttaaccgc ttgttttttg gagaaaaaat
    18601 atgaattttt aaaatttgca agtcaagata agctccatga aatcaatcgt atgaaaaact
    18661 tacccgagct ttttgaagtg caaaaatttg ccttagaaaa taaagcttta atgagcacac
    18721 tttcaggttc gggatcgagc tttttttctt tagcttttaa agatgatgct ttagctttgg
    18781 caaagaaaat acaaacaaaa tttaaagatt ttcgtgtgca atatttagaa tttgatgata
    18841 atggctttga aatttgctaa aaaatataaa aaaaagatat aattttgaaa aaacatatac
    18901 caattagaat gtgcatagtg tgtaaaaacc gctttgagca aaatatgtta tttagattta
    18961 aagttgtttt aggagatatt gtgcctaaag cagaacatgg aagaagcgga tatttatgtc
    19021 aaaattgtat tgagagagaa gataaagtct tacaaaaagc attttctaaa atatgtaaaa
    19081 atttaaatac taaaattact cagcaaggac ttaaggagat atttttaaat ggcaaagatt
    19141 agaattcatg aaatcgcaaa agaattaggt tatgatagta aggaaattat tgaaaaggca
    19201 aatgaattag gacttggaat taaaacagca tcaaatgctg tagaacctga gattgcggca
    19261 gctatttatg agtatataca aacaagagaa attccagaag ctttcaagaa aaatatcaaa
    19321 acccctacgg caaaaaagcc taaaaaagaa aatataaaag aacaagaaaa gctaaatgaa
    19381 tctgaaaaaa aagaacctaa aaaagaagaa aagcttaaac aagaagttaa aaaagaagaa
    19441 ttaaaaactg aaaaagaaaa tgcaaaagag gaagaaaaac aagaaattat tgatactcat
    19501 aagccacaaa gccttgctag tgcaacttta gccaaaagac gcggacttgt tattgttaaa
    19561 aagaaaaaag acgaagaaga aattcaagtt aaaaaagaag aagtaaaaaa ttcaaatgat
    19621 atatctatca ataatgaaga gcgcttaagt ttaaaaacta tgttttcaaa tgctgatgag
    19681 agtttaaaga aaaagaaaaa agaaaaaaaa tcttttgttg caagtaaaaa agaaagtacc
    19741 gaaaaaatga attttttaga tgaacatgat tttggtgata tttctttaga tgatgaagat
    19801 gaggtagtat tacctgattt tagtataaaa gaacaagaaa aaccacaaaa tatcaataaa
    19861 aaacaaccta attttataag acaagctgtt ggaaattctg cgggttttgg gcttgaaggt
    19921 ggaattcaaa gaagaagtcg taaaaaacca tctaaaaaga ttgaaaaaaa ggaagtagaa
    19981 gaagtaggta gcgttgctat ttctaaagaa attcgtgtgt atgaattcgc tgataagata
    20041 ggaaaaagca ctagtgaagt gatttcaaaa cttttcatgc ttggaatgat gacaacaaaa
    20101 aatgatttct tagatgaaga tgcgattgaa attttggctg ctgaatttgg tatagagatc
    20161 aatatcatta acgaggctga tgagtttgat tatgtaaaag actatgaaga agagactgat
    20221 gaaaaagatt tagtgactag agcacctgtg attaccatca tggggcatgt tgatcatggt
    20281 aaaacttctt tgttagatta tattagaaaa tcacgcgttg caagtggtga agcagggggt
    20341 attactcagc acgtgggtgc ttatatggta gaaaaaaatg gacgtaaaat tacttttatt
    20401 gatactccag gtcacgaagc ttttactgct atgcgtgcaa ggggtgcaag tatcactgat
    20461 attgtaatca tcgttgtagc cgcagatgat ggggtaaaac cacaaactaa agaagcgata
    20521 aatcatgcta aagcagcagg tgtgcctatt attattgcta ttaataaaat ggataaagaa
    20581 gcagcaaatc ctgatatggt aaaaactcaa ctcgcagaaa tggaaatcat gccagtagaa
    20641 tggggcggat cttatgaatt tgtaggagtt tcggctaaaa caggaatggg gattgaagat
    20701 ttacttgaaa ttgtgctttt acaagctgat attttagaac ttaaagccaa tccaaaaagt
    20761 tttgctaaag caagcattat agaaagttct gtgcaaaaag ggcgtggtgc ggtagctact
    20821 atcatcgtgc aaaatggaac acttactgta ggaagtactg tggttgcagg cgaggcttat
    20881 ggaaaagtac gtgcgatgag tgatgatcaa ggtaaagcct taaaagaaat caaaccaggc
    20941 gaatgtgggg ttatcgtagg acttagtgaa gtggctgatg cgggtgaaat tttaatcgca
    21001 gtaaagagtg ataaagaagc aagagaatac gctaataaac gccacgaata caaccgccaa
    21061 aaagaactta gcaaatctac taaagttagc attgatgagc ttggagctaa gatcaaagaa
    21121 ggcaatctaa aagccttgcc tgttatttta aaagctgatg tgcaaggatc tttagaagcc
    21181 ttaaaagcaa gtttagaaaa acttagaaat gatgagatta aagtgaatat cattcatagt
    21241 ggggtaggag gaatcacgca aagtgatata gagcttgcaa gtgcgagtga aaactctata
    21301 gtactaggtt ttaacatacg cccaacaggg gaagttaaag agcgtgctaa agataaaggc
    21361 gtagaaatta aaacctataa tgtgatttat aatcttttag atgatgtaaa agccttgctt
    21421 ggtggtatga tgagcccgat tatttctgaa gagcaattag gacaagcaga gattagacaa
    21481 gtgatcaatg taccaaaaat cggacaaatt gcaggttgta tggtaaccga aggggtgatt
    21541 aaccgtgggg ctaaaattcg ccttatccgt gatggagttg tggtttatga gggaaatgta
    21601 agctcactta aacgctttaa agatgatgct aaagaagtgg caaaaggcta tgaatgtggc
    21661 gtaggtatag aagggtgcga tgatatgaga gtgggtgatt atatagaaag ctataaagaa
    21721 gtagaggaac aagcaagtct atgaacccaa gtgagattaa aaaactacgc actgaaagta
    21781 tcttaaaaga gctgatccct gaagctttag caaatttaga tgatgaaaat ttgaaaaatt
    21841 tgtgtgtagt ggatgtagag tgtaaaaaag gcagatatga tgcttttgtg tatcttgata
    21901 agatgttttt taatgttcat gagcaagaaa aaattttatc ttctttaaaa aaggcaagta
    21961 gagctttgca aaattactgc atgagtgagc agggttggta taggtgtccg aattttcatt
    22021 ttaaatttga tgataggctt gagtatcaaa accatatgga tgcacttttt gaaaaaataa
    22081 aaaaggataa aaatgaatct tgaagccctt tgcaaagaag tgaatttaga gctttatgat
    22141 agcgaattaa ctagcgaaaa tggcaagaaa atttaccgcg tttatgtgat gaagccctta
    22201 gatgaaaagg gtgaaagaag gggtgtaaat ttggatgatt gtgcaaggct tagtgaaatt
    22261 ttatcaccta ttttcgatgt ggaaccacct gtaagtggcg agtatttttt agaagtatct
    22321 tcagcaggac ttgagagaaa acttagcaag atagagcatt ttgcaaaaag tatcaatgag
    22381 cttgtaaaaa tcacaacagg tgaaaaagaa aaaatcgaag caaaaatcat cagcgtagag
    22441 gatgaaaata tcactttaga aaatttagaa aataaagaaa aaactactat aaattttaat
    22501 gatataaaaa aagctagaac cttcatacaa tggtaaaaat ttagattttt aatttttacc
    22561 tatcttttat ataattaaaa ttaaacacaa aaattcaaaa ggcatacaat gctagaagat
    22621 aaatacgatt ggaaaataag taaggcagat caaaatggta atgtg
//
LOCUS       DAPIWQ010000009        22531 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.009, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000009 DAPIWQ010000000
VERSION     DAPIWQ010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22531
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.009"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            87..1895
                     /locus_tag="RJ267_000260"
     CDS             87..1895
                     /locus_tag="RJ267_000260"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HDV7388146.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKSLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ISKYEITKSEALAKFQNDDLKQEVLLRIPDRAVSIYKQGEFEDLCRGPHVPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKA
                     IGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQV
                     DFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEV
                     AKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            1892..2410
                     /locus_tag="RJ267_000261"
     CDS             1892..2410
                     /locus_tag="RJ267_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HDV7388147.1"
                     /translation="MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            2449..3540
                     /locus_tag="RJ267_000262"
     CDS             2449..3540
                     /locus_tag="RJ267_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HDV7388148.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLSFLNNGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLEDYSKLINECYLANKDKDLLQNIKKYYKNLIQ
                     NLDFQKGFISELYAPKDDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKELRHFFIA
                     PLIYEASVHSNTSGVFKGFYKGKDGIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEF
                     EVMQKDANMLAKELDFFDVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPK
                     DWNRSTFNKSKFAQDALFELINDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILE
                     QKYNTFRASRNLKNRNIHLHEQLYILVKN"
     gene            3582..7044
                     /locus_tag="RJ267_000263"
                     /pseudo
     CDS             3582..7044
                     /locus_tag="RJ267_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172669436.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            7125..8153
                     /locus_tag="RJ267_000264"
     CDS             7125..8153
                     /locus_tag="RJ267_000264"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HDV7388149.1"
                     /translation="MKIKVGILGASGYAGNELVRILLNHPKVEISYLGSSSSVGQNYQ
                     DLYPNTPLNLCFENKNLDELELDLLFLATPHKFSAKLLNENLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQELLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLF
                     KEKIIDFSSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYNLALHRHTPEIEEHLSY
                     AAKEKITLQFTPHLVPMQRGILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQ
                     SLPQTRWVKSSNFADINFSVDQRTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
     gene            8163..8609
                     /locus_tag="RJ267_000265"
     CDS             8163..8609
                     /locus_tag="RJ267_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7388150.1"
                     /translation="MLIRAMQKSDYEAVYKLWCEIKGFGIRSIDDSKENIENFLDRNP
                     NLSVVAVIDEEIVGSILCGHDGRTGGFYHVCVHKDHRKKGIAHEMAKFCLEALKAQKI
                     NKIALIAFKNNDLGNEFWKHYGFTLREDANYYDLSLNEYNQTSFNA"
     gene            8613..9458
                     /gene="argB"
                     /locus_tag="RJ267_000266"
     CDS             8613..9458
                     /gene="argB"
                     /locus_tag="RJ267_000266"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HDV7388151.1"
                     /translation="MIMQKYLEKANVLIEALPYIRKFNSKIILIKYGGSAMENEELKH
                     CVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKATIEVASMVL
                     NHINKNLVHSLQNLGVKAIGLCGKDGALLECVKKDENLAFVGTIQKVNSKILEELLEK
                     DFLPIIAPIGMDENFNTYNINADDAACAIAKALRAEKLAFLTDTAGLYEDFNDKNSLI
                     SKISLEQAKILAPKIEGGMHVKLKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGI
                     GTLVG"
     gene            9462..10649
                     /locus_tag="RJ267_000267"
     CDS             9462..10649
                     /locus_tag="RJ267_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HDV7388152.1"
                     /translation="MKMDYKEQSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSG
                     IGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSG
                     TESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHG
                     STYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGF
                     MQGLSLDKSVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL
                     KSF"
     gene            complement(10668..11297)
                     /locus_tag="RJ267_000268"
     CDS             complement(10668..11297)
                     /locus_tag="RJ267_000268"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HDV7388153.1"
                     /translation="MNAFEQKRCQNMAEEIAQKVFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALDFKNADSILEIGCGSGYQAAILSKVIRRVF
                     TIERIENLAKKAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILL
                     DQLSDDGILVAPILHNGKQFITRLRKNGTNLQKEILEECLFVPIVDGKE"
     gene            11386..11934
                     /locus_tag="RJ267_000269"
     CDS             11386..11934
                     /locus_tag="RJ267_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HDV7388154.1"
                     /translation="MLIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESSIWFNCVLRA
                     DVNFIKIGKRTNIQDLSTVHVWHREFDEKGKLKDAGFPTIIGDDVTIGHNCVIHACVI
                     KNRVLIGMNAVIMDNALIEEDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNDEEV
                     SFLKQSALNYVDFKNEFLKDLQ"
     gene            complement(11903..13276)
                     /locus_tag="RJ267_000270"
     CDS             complement(11903..13276)
                     /locus_tag="RJ267_000270"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HDV7388155.1"
                     /translation="MMTSKTSLALLCDFYEFTMSQGYFKNNKKDQICYFDIFFRKIPD
                     SGSFAIFAGLEDILDFVENLSFDAEDIEFLRKQGIFDTEFLDFLANFKFKGEIYAMRE
                     GEVIFPNEPLLCIKATTIEAQLLETFLLLSLNHQSLIATKTNRIVRAAKDSKILEFGS
                     RRAQGSEAALKGARAAFIGGCIGSACTLAGKIYNIPINGTMAHSWVQMFENELEAFKA
                     YVKIYPKNPVFLIDTYDCLNSGLKNAIKVFKEFGIQEGGVRIDSGNLLELSLKIRQEL
                     DQAGLQKCKIIVSNALDEWSIKKLKEQNAPIDIFGVGERLITASSDPIFSCVYKLAAL
                     EDQGIKPKIKISENNEKSTLPHFKKLFRVYDKNTQKILFDELYVFDENPNQDENLERK
                     ELLELVYKEKRLLKKSSLNTIQDYTKEQISKLDESFLDLDRFVKFEVKLSPKLQNITE
                     DLLKTRF"
     gene            complement(13263..14285)
                     /locus_tag="RJ267_000271"
     CDS             complement(13263..14285)
                     /locus_tag="RJ267_000271"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDV7388156.1"
                     /translation="MQRKRIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGDVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLSAINLDKLYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            complement(14299..14709)
                     /locus_tag="RJ267_000272"
     CDS             complement(14299..14709)
                     /locus_tag="RJ267_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HDV7388157.1"
                     /translation="MKTKAKISSRWLRFRALLIDIFLIYVPILYLFYFLLGSKEAFLN
                     NHFITTLCTFLFGLIQAIFLTKKAQSPGLKAYDLYLIDIKTGKKLSFLRILLRYVIFI
                     ISFGLLFGLFVSFVRKDRLNLHDILTQSCIATKA"
     gene            complement(14710..15318)
                     /gene="pyrE"
                     /locus_tag="RJ267_000273"
     CDS             complement(14710..15318)
                     /gene="pyrE"
                     /locus_tag="RJ267_000273"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HDV7388158.1"
                     /translation="MNLEQIYKDCGAYLEGHFLLSSGKHSQFYLQSAKVLEDPKLAAK
                     LCDELAKIIASYKIEFDSICSPALGGILAGYELARACSKRFIFTERVNKEMTLRRGFE
                     VKKGEKFIICEDIITTGGSALESAKIIESLGGIVVGFAALANRGFCAVENLKSPRKDN
                     AKLPENLPLFTLGNFEFEIYDETNCPLCKKGNKAIKPGSRGN"
     gene            complement(15321..15884)
                     /gene="frr"
                     /locus_tag="RJ267_000274"
     CDS             complement(15321..15884)
                     /gene="frr"
                     /locus_tag="RJ267_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HDV7388159.1"
                     /translation="MIMLNEIFNKQKTQSEKSLEALKKDFTTLRTGKVNIHILDHITV
                     DYYGTQTPLNQVATVLASDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKL
                     FFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYD
                     EVQKLTDTYTTKIDEGVKSKESELLKV"
     gene            complement(15894..16265)
                     /gene="secG"
                     /locus_tag="RJ267_000275"
     CDS             complement(15894..16265)
                     /gene="secG"
                     /locus_tag="RJ267_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HDV7388160.1"
                     /translation="MITLLIILQFIIVVVICIAVLLQKSSSIGLGAYSGSNESLFGAK
                     GPAGFLAKFTFVMGILLIANTIGLGYLYNKASKDSLAEKIKVENNNTTIPSAPIVPTT
                     PNTNSIAPSAPQLPSDVNSSK"
     gene            complement(16369..17064)
                     /locus_tag="RJ267_000276"
     CDS             complement(16369..17064)
                     /locus_tag="RJ267_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HDV7388161.1"
                     /translation="MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGA
                     YVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLT
                     PLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAA
                     SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            17224..17859
                     /locus_tag="RJ267_000277"
     CDS             17224..17859
                     /locus_tag="RJ267_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HDV7388162.1"
                     /translation="MENLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRVGEDYLATTSAIEYALNSLHIKNIVVCGHSN
                     CGGCNALYYSDEELNKIPNVKKWLTMLDPIKKDVMIFARDDLAMRSWLTEKLNLVNSL
                     QNILTYPGVQEALDEGKIEVHAWYYIIETGEIYEYDFKAKIFTLIQDRKVQ"
     gene            17856..19739
                     /locus_tag="RJ267_000278"
     CDS             17856..19739
                     /locus_tag="RJ267_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HDV7388163.1"
                     /translation="MKKIIFSLCFFILHLGAQEFKFIDANISKEDEGIYALVEKYVDL
                     NNQIKEFKKNNDENSSTFNGILSEFEKDKKTILAKIPDMIVGQKINEEAVARFLKAKE
                     KLLDVQKKNINKPYIYTDATLNLVYFNIVESFYSSLFEVEKLFKNTASSEDLIATVDK
                     AMENLQNSSNVNLDSFKSKITNPEELEKITLKERYISNAVDSYSEILKYLRSNADLLE
                     SNYIFSLLELQVWIDRINEAIGVSFVNIGKIVISALVLVFFISLRRFFANIVYFFLVQ
                     LFYRNKNDVDDIKVIFIENIKKPVGFLLIVYAISLCLTIATYPAPLSVNLSNFFHIVY
                     AVLIAWLILRMLDGYGVVLVSKLAQKSGKKEVVNLIIKILYFVIIIIALLYILAQLGF
                     NISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGTVVETG
                     LRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVK
                     DLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSI
                     NIELYFYIKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAK
                     AIK"
     gene            complement(19762..20733)
                     /locus_tag="RJ267_000279"
     CDS             complement(19762..20733)
                     /locus_tag="RJ267_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HDV7388164.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHSVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(20743..21924)
                     /locus_tag="RJ267_000280"
     CDS             complement(20743..21924)
                     /locus_tag="RJ267_000280"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HDV7388165.1"
                     /translation="MKVYLDNNATTMLDPNAYELMLPFLKDMYGNPNSLHQYGSATHP
                     ALREALDKLYAGLGANDLDDIVVTSCATESINWVLKGVYFDHILDKERNEVIISSVEH
                     PAVTAAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IKAMAELAHEFGALFHTDATQAVGKIKVNLTQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAEHDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
     gene            complement(22102..22503)
                     /locus_tag="RJ267_000281"
     CDS             complement(22102..22503)
                     /locus_tag="RJ267_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HDV7388166.1"
                     /translation="MTYNEKIISMNNDLLDHQHKELFEISKKLSLMNQRHVGTKELKI
                     VLRELLIMINRHFSDEEAFMREIEYPYINHHTRIHRKIILEIEEIIISEAKFVNIMTE
                     KLNLVVQDFIFKHTAKEDSKIVKYYEEKFKK"
BASE COUNT         7831 a         3108 c         3873 g         7719 t
ORIGIN      
        1 atttcaaaaa taattaagtc ttagaaagtt aaaattagaa ctttataaac actcacaggg
       61 taagtgagcg acaaagggtt aaaaatatgg aaaaagaagt tattgcgtat ttggacaatg
      121 agacaataat tgactctcaa agtgtgaaaa atacaaattt aaaagaaatt tattttgata
      181 attctaaaga aagtttagaa gtaatccgtc attcttgtgc gcatttaatg gcacaggcga
      241 ttaagagttt gtatcctgaa gctaaatttt tcgttggtcc tgttatagaa gatggatttt
      301 attatgattt tcgtgtggaa agtaagattg gcgaagaaga tttggtaaaa attgaaaaaa
      361 agatgaaaga acttgctgaa gcaaagattg aaatttcaaa atatgaaatc acaaaaagcg
      421 aagctttggc taaatttcaa aatgatgatt taaaacaaga agttttattg cgtattcctg
      481 atagagctgt aagtatttat aaacaaggtg aatttgaaga tttgtgtcgt ggtcctcatg
      541 tgccaaatac gaaattttta cgctttttta aactcactcg tgttgcagga gcgtatttgg
      601 gtggcgatga aaaaagagaa atgcttactc gaatttatgg aactgctttt gcagataagg
      661 aaagtttaaa agagtattta accattattg aagaagctaa aaaacgcgat catagaaagc
      721 ttggaacaga gcttaagctt tttacttttg atgatgagat cggaggaggt cttcctattt
      781 ggttgagtaa tggtgcaaga cttagatcta aacttgaaca tatgctttat aagatccatc
      841 gtttacgtgg ttatgagcct gtgcgtgggc ctgaactttt aaaagcagat gcatggaaaa
      901 tcagtgggca ttatgcaaac tataaagaaa atatgtattt tacacaaatt gatgaacaag
      961 aatatggcat taagcctatg aactgtgtgg gacatattaa aatttatcaa agtgatgtaa
     1021 gaagttatcg tgatttgcct ttgaaatttt ttgaatacgg cgtggtacat cgtcatgaaa
     1081 aaagtggcgt tttgcatgga ctttttagag tgagagaatt cactcaagat gatgcacata
     1141 ttttttgtat gccaagtcag attaaagagc aggttttaga aattttagct tttgtggata
     1201 atttgatgaa attatttgat tttagctatg aaatggaaat ttcaactaaa cctgaaaaag
     1261 ccataggtga tgatgaaatt tgggaaatag cgactaaggc tttaaaagaa gctttagatg
     1321 aacaaggttt aaaatacggt attgatgaag gtggcggggc tttttatggg ccaaagattg
     1381 atattaaaat caccgatgct ttaaaaagaa agtggcaatg cggaaccata caagtagatt
     1441 ttaacctgcc aagtcgtttt aaacttgaat acactgatag tgataatgaa aaaaaacaac
     1501 ctgtaatgtt gcatcgtgcg attttaggtt cttttgaaag atttatagga attttaaccg
     1561 agcattgtgc gggtgagttt ccatttttta tcgcaccaac tgcggtgggt atagtgccaa
     1621 taggcgaagc acatattgct tacgcaaaag aaattcaaaa agaattatta gagcttaata
     1681 tcgatagcga ggtgtatgaa aaaaatgaga gcttaagtaa aaaaattcgt atcgctgaaa
     1741 agcaaaaatt acctatgatt ttagttttag gcgatgatga ggtggcaaag cgtagcgttg
     1801 ctttaagaga tagaagagct aaagaacaaa aaaatcttag cttggacgaa tttattaaat
     1861 tagttaagga gaaaatgagt gaggtacact tttgagtaaa gaaaaagaag tattgctcaa
     1921 tgaagaaata agagcggatg aaatcagatg tgttggcgat gatggcaaag tttatggtat
     1981 tatcagtagt gatgaagctt tagaaattgc aaatcgttta ggacttgatc ttgtaatgat
     2041 agctgcagat gctaagccac ctgtttgcaa gatcatggac tatggtaaat tccgttatca
     2101 acaagagaaa aaacaaaaag aagcaaagaa aaaacaaaaa gtgattgata taaaagaaat
     2161 caaactttct gtaaaaattg ctcaaaatga tattaattac aaggtaaaac atgctttaga
     2221 atttttagaa caaggtaagc atgtgagatt tcgtgtgttc ttaaaaggac gtgaaatggc
     2281 aactcctgaa gcaggtgtag ctttgcttga aaaaatttgg actatgatag aaaatgaagc
     2341 taatcgtgac aaagagccaa attttgaagg tcgttatgta aatatgcttg taactccaaa
     2401 aaaagcttaa tccacttttg tggataaagc ttttaaaggt tttaaatttt gaaagaaaat
     2461 ccttcttttt taaaagagca aattataact tatcttggaa ataaaagagc acttttaagt
     2521 tttttaaata atggctttaa ggtagctaaa aaagaacttg gtaaagataa atttagtttt
     2581 tgtgatatat ttagtggctc aggtgttgta agtcgttttg caaaagcaca ctcaaattat
     2641 attttagcca atgatttaga agattattca aaactcatca atgagtgtta tcttgctaat
     2701 aaagacaaag atttacttca aaatataaaa aagtattata aaaatttaat ccaaaattta
     2761 gattttcaaa aaggttttat cagtgagctt tatgctccaa aagatgatga tgatattaaa
     2821 aaaaatgaaa gggtttttta tacttttaaa aatgctttat atcttgatac tataaggcaa
     2881 aaaatcgaaa atgaaattcc aaaagaattg aggcatttct ttatagctcc tttgatttat
     2941 gaagccagtg ttcattcaaa tactagcgga gtttttaaag gtttttataa gggtaaggat
     3001 ggcatcggaa aatttggtgg cgaaggacaa aatgcactta aacgcattaa aggagaaata
     3061 gagcttaaaa tgcctatttt ttcaaatttt tcttgtgaat ttgaagtgat gcaaaaggat
     3121 gcaaacatgc ttgcaaaaga acttgatttt tttgatgtag tgtatcttga ccccccttat
     3181 aatcagcacc cttatagttc taattatttt atgctaaatt taattgcaaa ttataaaaaa
     3241 cctgaagaaa tttctaaaat cagtggcatt ccaaaggatt ggaaccgcag tacttttaat
     3301 aagtcaaaat ttgcccaaga tgctttattt gaacttatta atgatttaaa agcaagagtg
     3361 attttacttt cttataattg tgaaggtttt gtaaaaaaag aaattttttt aaagcgctta
     3421 agcactcttg gaaaatgccg gattttagag caaaaatata atacttttag agcttctcgc
     3481 aatcttaaaa atcgcaatat ccatcttcat gagcaacttt atattttagt taaaaattag
     3541 tttttcgtgc taaaattgca cttaaaaatg aggagggatt tatgaaacta aaattatctt
     3601 tttgtacatt aatggcattt ggtttttcta actatctttt tgcttcagct attgatccaa
     3661 agttattttc aagaatatct tgattttgcc agtaataaag gcaaatttca agtaggtcaa
     3721 attggctttt aaattttagc aaaaaatcct agtcaaaata tctcttttaa tgtgcctatg
     3781 attgattttt ctacttcaaa tcgtggagga aaattccaag gagaatttac caatatagga
     3841 caatcttata tagtcagcgc ttctcatatg agtacaagtt taaatactgg gaagtaaata
     3901 aagactatgt gaaacaaggt agtgttttac actttggagg ggtagcaaat agaatcgtaa
     3961 gctcaagtga taattttact tataaaaaag aaaatgtgga ttttgctgtt ttaaaaatga
     4021 gtaagattag tctcaataaa agtgcaaatt tgagtaaaga tttaaatctt attgaaaaaa
     4081 ttctggcgat ggtggagata tttatgaata caaggatcca ttttgggata gttgtcaaag
     4141 tggaaaatgt gattattcaa aaggtaaagg caagcttttt gatagttcgg gttatgagta
     4201 ctttgcaaga gagggaagtg gtattgtagc tttaggtttt gaagatacaa ataaagtacc
     4261 cattaagatt tttgattcta atgaaatcaa tttaggaggt tttgtcggtt taactcctaa
     4321 aaatactgaa gataagcgtt ttaagttgca atttcttaat tataccaatg ataaaagaaa
     4381 tccttttaca agttcttcaa tatccgggga ttctggaagt agagtttatg tttatgataa
     4441 gatggataaa aaatggtatt tagtaggtgt agtaagtacg agtaattgta atgtccattt
     4501 tactatggat atacttgttt gcaggttgat tatgctttga tcaatcaagc aaagatcaat
     4561 gaattttaaa atgctcataa agtagtcata ggatctggaa cttatacact tagtagcgat
     4621 ggtttgatga aagatggtaa aaaaatagaa aatgtaagtt tgatttctaa gactaatgtg
     4681 ggttatgtaa gctataaaaa ttcttttgat gataaaataa ttgtgataag agaattgaag
     4741 aaatgcaaaa tagcaaggat ttgtattttt ctcaaaatgg aagtataaat ttaaatagcg
     4801 atgtggattt aggcgctagt gttttaaatt tgataaaaat tcaaattggc aaataacagg
     4861 cgataaatgg cttatacatg gcggaattta tgctgataag ggttcaaggt agaatataat
     4921 gttaaaacca aaaaagatga ttttctttaa taaaatgggt gaaggagagc ttgttgtcaa
     4981 aagtcaaagt gtggatacag gacttagaat gggtgaggac caaggtaagt cttgagggtg
     5041 aaggtttaag ttttagcgaa atttatatga atggcagaac tttggattta tcaggcttaa
     5101 cattaaattt tgatcaaatt aaaactgact ctaataatgt ttttatcaca agttcttaat
     5161 caggaataca tttaaattta gaaaacaagc aagattatct ttatcatggc aatatctttt
     5221 cagatgaagc tgtaacaatg agtgccaata cagacaaagc tttgattttt gatggtaata
     5281 tttacaataa agaaggtgtt tttaggacag aaaatgccaa gttaaatttt caaggacatg
     5341 ctagaataca cgcttatgta agcaaagaac aagctaaaaa acttcaagaa catggtttaa
     5401 gtgctttaac taagcctgta agttttacac aagaagattg ggaagatagg gtttttgttt
     5461 taaaagagct taatttagaa aaaaagcgag ttttatttag ggcgtaatgt aagcttaaaa
     5521 gtagaaaacc ttaatgctaa aaattccaaa atagagcttg gaagtaaaaa tttgtggatc
     5581 gatgaaaaag atggggaaaa tattattgat aagactgatg attattctta tggagatgtt
     5641 gtataaacag gagttggcaa agaaatggct tttgagcaaa agctttaaaa tacccaaaat
     5701 gctaagatag aaaaggttta ttttagtgta aatttaaatc ttgatcattc tgatgttact
     5761 ttgcaaaaca cattttttag tggtaatatc aaaggtatca atgatacgca aaaaaaatct
     5821 tgcgattaaa gattctttgc ttgagtctca tatataaatg agcaatcttc aagtagaaaa
     5881 aagtgctatt tataggaaag ttgatgcaaa aaaattaagt gcaaataata caatatttaa
     5941 aatcaatgcg gattttgaaa attctaaatc agattatatt aattctaagg aaagcacaca
     6001 aggagtaaat aatactttag tattaatttt tcttaataat cctagtaaaa agcgggttta
     6061 aatatcttac tagctcattt aaaagatgaa aataaacatt taacaaagga attttttact
     6121 atgccaaatg tgagcaaggt tttagtacgt ataccccaaa tgttgttttt tctcataatg
     6181 aggaaaattt tgcccagagt ggaatttaga aaaaattgat tctaagatta aagatgaata
     6241 tttttttact aatgataata ctcaagctat tgtaaaaact aaatctatac ttgctcaagc
     6301 tattttaggc tccatgatag gagtggaata atatgcataa aagaatgggg gaattacgca
     6361 ataatcctta tgaaagtggt gtatggttaa gaacttttgg atggggtacg agtgatgagt
     6421 ataatagtgg aaaatacttt gaaattcaaa gcggacatga taaattaaac gagtattcga
     6481 atttcgagct ttacagtgga gtaaggtttt tatagtgatt ttgttttaga tatatttatt
     6541 atcaaaatga aataaatgca aattttattc caggaaatca aggtagatta gatgataatg
     6601 atggttcgca taatattatc ttaagtgctg agttaggtta tagaaaagct tatgataaat
     6661 tttatcttga gccgatttgg aatttatcag tggttatgta ggagctatgg atctaaaagg
     6721 agatattgct agtttaaaac gattttctta tattccttta gtcgtaaaaa cagcattttt
     6781 cataggaagt caaaattaaa atttaaattt tagaacagga cttggtttgt atgcggatcc
     6841 gattaaagca ggagatcaaa ttttagagga tcaagcaagt cagagaagat atgaaggaaa
     6901 aaagatcaaa gaatgtttat aaatttagga aatgattata agcttaacga taaaacacgc
     6961 tttaattttg aatttgaaaa gacatttttt ggcgatttaa atgtagattg gagtgcaaat
     7021 gctaatttaa gatatagttt ttaaataaaa aataatttaa aaattgtatt tttattttaa
     7081 gcttttttgt ttataatact tgcttttaca tttaaaggat aaagatgaaa ataaaagttg
     7141 ggattttagg agcgagtggt tatgcgggaa atgaacttgt tcgcattttg cttaatcatc
     7201 ccaaggttga aatttcttat ttgggttcga gttctagcgt ggggcaaaat tatcaagatc
     7261 tttatcctaa caccccttta aatttatgtt ttgaaaataa aaatttagat gaacttgaac
     7321 ttgatctttt gtttttggct actccgcata aatttagtgc taaactttta aatgagaatt
     7381 tattaaaaaa gatgaaaatc attgatttaa gtgcggattt tcgtcttaaa aatcctaaag
     7441 attatgagct ttggtataaa ttcactcatc ctaatcaaga gcttttgcaa aatgcggttt
     7501 atggactttg tgagctttat aaagaagaga taaaaaaagc aagtttagtg gcaaatccag
     7561 gttgttatac cacttgttct atcttaagtc tttatccgct ttttaaagaa aagatcattg
     7621 attttagctc agttattatt gatgcaaaaa gtggagtaag tggagcagga agaagtgcaa
     7681 aggtggaaaa tcttttttgt gaagttaatg aaaatatcaa agcttataat ttagctttgc
     7741 atcgccatac tcctgaaatt gaagagcatt taagctatgc ggccaaagag aaaatcactc
     7801 tacaatttac ccctcatctt gtgcctatgc aaagaggaat tttaatcagt gcttatgcaa
     7861 atttaaaaga ggacttgcaa gaacaagata tacgcgatat ttatacaaaa tactatcaaa
     7921 acaataaatt cataaggctt ttaccgccgc agtcgcttcc gcagactcgg tgggttaaat
     7981 caagcaattt tgcggatata aattttagtg tagatcaacg cacaaagcgt gttattgtgc
     8041 ttggtgctat tgataattta atcaaaggtg cagcaggaca agctgttcaa aatatgaatt
     8101 taatgtttga ttttgatgaa gatgaaggac ttaaattctt tgcaaatttg taaaggataa
     8161 aaatgttaat acgagctatg caaaaaagcg attatgaagc cgtttataag ctttggtgtg
     8221 agataaaagg ctttgggata agaagcattg atgatagcaa agaaaatata gaaaattttt
     8281 tagatagaaa cccaaatctt agcgttgtag cagtgattga tgaagaaatt gtaggaagta
     8341 tactttgcgg gcatgatgga cgcacaggag gattttatca tgtatgtgta cataaagatc
     8401 atagaaaaaa gggcatagcg cacgagatgg caaaattttg tcttgaggct ttaaaagctc
     8461 aaaagattaa taaaatcgcc ttaatcgctt ttaaaaacaa tgatttaggc aatgagtttt
     8521 ggaaacatta tggttttact ttaagagagg atgcgaatta ttacgatctt tctttaaatg
     8581 agtataatca aactagcttt aatgcttaag gaatgatcat gcaaaaatat ttagaaaaag
     8641 ctaatgtctt aatcgaagct ttgccttata tacgcaaatt taattctaag attatactta
     8701 taaaatacgg cggatcagct atggaaaatg aagagctaaa gcattgtgtg atgcaagata
     8761 tagctctttt aaaactcgtg ggtttaaagc ctattattgt acatggtggg ggaaaagata
     8821 tttctgctat gtgtgaaaaa ttaggcgtaa agagtgagtt taaaaacggt cttagggtta
     8881 gtgataaagc cactattgaa gtagccagca tggttttaaa tcatatcaat aaaaatttag
     8941 tccatagttt gcaaaattta ggagttaaag ccatagggct ttgtggtaaa gatggcgcgc
     9001 ttttagaatg tgtgaaaaaa gatgaaaatt tagcttttgt tggcacgata caaaaggtaa
     9061 attcgaaaat tttagaagag cttttggaaa aagatttttt acctatcatt gctcctattg
     9121 gcatggatga gaattttaat acttataata tcaacgctga tgacgcagct tgtgcgatcg
     9181 ctaaggcttt aagggctgaa aaacttgctt ttttaactga tactgcaggg ctttatgagg
     9241 attttaatga taaaaattct ttaatttcta aaatcagcct tgaacaggct aaaattttag
     9301 ctcctaaaat agaaggtggt atgcatgtaa aattaaaatc ttgcattgat gcttgtgaaa
     9361 atggagtcaa aaaggtacat attttagatg ggcgtgtgaa acattctttg ttgcttgagt
     9421 tttttaccga tgaaggtata ggcactttgg tgggttaaag gatgaaaatg gattataaag
     9481 aacaaagtca tattatccct acctataagc gttttgatat agttttagaa aaagggcagg
     9541 gggtttatct ttttgacgat aaggctaaaa aatatcttga tttttcaagt ggcataggtg
     9601 tttgtgcttt aggatataat catgctaaat ttaatgctaa aatcaaagcg caagtggata
     9661 agcttttgca tactagcaat ttatattata atgaaaatat agctgctgca gctaaaaatt
     9721 tagccaaagc tagtgcttta gagcgtgttt tttttacaaa ttctggtaca gaaagtatag
     9781 aaggagcgat gaaaacagct agaaaatacg cctttaacaa aggtgttaag ggtggacaat
     9841 ttatcgcttt taagcattct tttcatgggc gtactttagg ggctttatcg cttactgcta
     9901 atgaaaaata tcaaaagcct tttaaacctt taatttcagg ggttaaattt gcaaaatata
     9961 atgatatttc aagcgttgaa aaactggtga atgaaaaaac ttgtgccatt atcttagaaa
    10021 gcgtgcaagg agaaggtgga ataaatcctg caaataaaga tttttacaaa gccttaagaa
    10081 agctttgcga tgaaaaagat atattattaa tcgctgatga aattcaatgt ggcatgggta
    10141 gaagtggaaa attttttgcc tatgagcacg cacaaatttt gcctgatatc atgacttcag
    10201 ctaaggcctt aggttgtggg cttagtgtgg gtgcttttgt aataaatcaa aaggtagcaa
    10261 gcaattcttt agaagcaggc gatcatggta gtacttatgg tggaaatcct ttagtttgtg
    10321 caggagtgaa tgcggttttt gaaattttta aagaagaaaa aattttagaa aatgtcaata
    10381 aactcacgcc ttatttagag caaagtttag atgagttgat aaatgaattt gatttttgta
    10441 aaaaacgtaa aggcttaggg tttatgcaag ggctgagtct tgataaaagt gtaaaagtag
    10501 ctaaggtcat tcaaaaatgt caagaaaatg cacttttatt aataagttgc ggggagaatg
    10561 atttgagatt tttacctcct ttgattttac aaaaagaaca tattgatgaa atgagtgaaa
    10621 agttaagaaa ggctctaaag agtttttaat aaattttgta aaaaaattta ttcttttcca
    10681 tctactatag gcacaaataa acattcttct aaaatttctt tttgtaaatt tgtgccattt
    10741 tttctaaggc gtgtgatgaa ttgtttgcca ttgtgtaaaa taggagcgac taaaataccg
    10801 tcatcgctta attgatcaag taaaatttca ggaatttgtg tcgcataagc agaaaataaa
    10861 atcctatcat aaggagcata atttttccag ccattttgtc catcatcaaa ttttacattg
    10921 atattaaaaa gttctaattc tctgaaagtt tgagcggctt ttttggctaa attttctatg
    10981 cgttctatgg taaaaacacg ccttatgact ttgcttaaaa tcgcagcttg atagccactt
    11041 ccacaaccta tctctaaaat actatcagca tttttaaaat ctaaagccat agtcatttta
    11101 gctacagtta aaggtgaact aatccattga gaatttgcta aaggcaaagc atcaaggcga
    11161 taagcatggg cttttaaagg agaaaaaatt tcacgtggaa tttgacaaaa agcattaaaa
    11221 agttcttcat tgataaaaac tttttgtgca atttcttcag ccatattttg acatcttttt
    11281 tgttcaaatg cgttcattac ttctcctata aatttaaata aaaattgtaa ctaaaaaagt
    11341 tgaaatagag ttaaacttag ctatacttaa ataaaaagga aaaaaatgct tataaaattt
    11401 aaaaatcata gtcccaaact aggtcaaaat gtttttgttg cagagggcgc taaaatcata
    11461 ggagaaatag aaataggaga tgaaagtagt atttggttta attgtgtttt aagagccgat
    11521 gttaatttta taaaaattgg caaaagaacc aatattcaag atcttagcac agttcatgtt
    11581 tggcataggg aatttgatga aaaaggaaag ttaaaagatg ctggttttcc tacaataata
    11641 ggagatgatg taactatagg acataattgc gttatccatg cttgtgtgat aaaaaatcgt
    11701 gttttaatcg gaatgaatgc tgttatcatg gataatgctt tgatagaaga agatagcata
    11761 gtgggtgctg gaagcgttgt aacaaagggt aaaaaatttc cgccacgctc tttgatactt
    11821 ggaaatcctg caaaatttgt gcgtgaatta aacgatgaag aagtcagctt tctaaaacaa
    11881 tccgctttaa attatgtgga ttttaaaaac gagtttttaa aagatcttca gtgatatttt
    11941 gaagtttagg cgagagtttt acttcaaatt tcacaaaacg atcaagatct aaaaaactct
    12001 catcgagttt tgaaatttgc tcttttgtat aatcttgaat agtatttaaa gatgactttt
    12061 taagaagtct tttttctttg tagactaatt ctaaaagttc tttgcgttct aaattttcat
    12121 cttgatttgg gttttcgtca aaaacataaa gttcatcaaa aaggattttt tgcgtgtttt
    12181 tatcataaac tctaaaaagc tttttaaaat gaggtagggt tgatttttcg ttattttcgc
    12241 tgattttgat tttaggtttt atgccttgat cttctaaggc tgcgagttta taaacgcaac
    12301 taaaaatagg gtcacttgaa gcagtgatca atctttcacc tacaccaaag atatcaatag
    12361 gtgcattttg ttctttgagt tttttaatgc tccattcatc aagtgcgtta gaaactatga
    12421 ttttacattt ttgaagtcct gcttgatcaa gctcttgtct gattttcaaa ctcaactcaa
    12481 gtaaatttcc agaatctatt ctcacgccgc cttcttgaat accaaattct ttaaaaactt
    12541 taatcgcatt tttaagtccg ctatttagac aatcataagt atcaatcaaa aaaacaggat
    12601 tttttggata aattttcaca taagctttaa aagcttcaag ttcattttca aacatttgca
    12661 cccaagaatg tgccatagtt ccattgatag ggatattata aatttttcct gctaaagtac
    12721 aagcacttcc tatgcaacct cctataaaag ctgctcttgc tccttttaag gctgcttcac
    12781 ttccttgtgc tctgcgtgaa ccaaattcta aaattttact gtctttagct gcacgcacga
    12841 tacgattggt tttggtagca ataaggcttt ggtggtttaa acttaaaagt aaaaaagttt
    12901 ctaaaagctg tgcttctatg gttgtagctt taatacatag caaaggttcg tttggaaaaa
    12961 tcacttctcc ttcacgcata gcataaattt cacccttaaa tttaaagtta gctaaaaaat
    13021 ctaaaaattc tgtatcaaaa ataccttgtt ttcttaaaaa ttctatatct tctgcatcaa
    13081 aactcaaatt ttcaacaaag tctaaaatat cttcaagacc tgcaaaaata gcaaaagatc
    13141 ctgaatctgg aatttttcta aaaaatatat caaaataaca aatttgatct tttttattgt
    13201 ttttgaaata gccttgagac attgtaaatt cataaaaatc acaaagcaag gctaaagaag
    13261 ttttagaagt catcaaagct tatactaccc ttagaataat tcgttacttt actttcaaag
    13321 aaattgctct tttgatcgtt aaattttgaa aaatcatcta cccatttaat aggatgtttt
    13381 gcattatata acttatctaa attgatcgca cttaatcttt gatctacaag ataatggata
    13441 tattcttcta tgatatcatc agtaaagccc atgatttgat tttgagtgat gtatttaccc
    13501 catttgatct caagatctcc agctttttta aacatatcat aaattttatt gatattttca
    13561 tcatggaata aatcaggtct ttctttgcgt actgaattga tcatattttg aaataataaa
    13621 agatgtgtga tttcatctct ttggataaag cggatcattt gtgctgaacc tagcattttt
    13681 cctgcacgtg caagtgcgta aatggcagta aaaccactat aaaaatatac tccttctaaa
    13741 atttgatttg ccaccatagc caaaagaagt ttattatcat ctacatcgcc tgctaattct
    13801 tcataaatac ttgaaataaa gtcatttttt tcacgcaaag tttcatcatg cttttccatt
    13861 tcataaatca aatctgtatt atcgcaaatc gcttctacca taacagcgta agattttgaa
    13921 tggtttgcct cttcataagc ttggcgtgcc aaaaccgcat tgatttcagg agctgtgatg
    13981 taagggttga tattatctgc taaattattg gtttggaaac tatccataga aataagctga
    14041 ctccaaacca aatcatacat tcttttttca cctgcagtta aattacagcg ataatcaagt
    14101 gcatctttag ttgtatccac ttcttttgga aaccaagtat ttgcctccat taaatcccaa
    14161 agttttaaag cccaagtata ttttgcctta gtgaaattta aaattccatg tgggttgcca
    14221 tcaaaaactt tacgatctcc tagggtttcg tttgaacttg gattgtaaat tctttttctt
    14281 tgcattttta acctttcttt atgctttagt agctatacaa ctttgagtta aaatatcgtg
    14341 taaatttaaa cgatcttttc ttacaaaact gacaaataaa ccaaagagta agccaaaact
    14401 tataataaat atcacatatc ttagtaaaat tctaagaaaa cttagtttct ttcccgtttt
    14461 tatatcaata agatataaat catatgcttt aagacctggg ctttgtgcct tttttgttaa
    14521 aaaaatagct tgaatcaaac caaataaaaa agtacataaa gttgtgataa aatggttgtt
    14581 taaaaaagct tctttagagc ctaataaaaa ataaaataaa tacaaaatag gaacataaat
    14641 aagaaaaata tctataagca aagctctaaa tcttagccat ctagagctaa tttttgcttt
    14701 agttttcatt taatttccac ggcttcctgg ttttatagct ttattccctt ttttacaaag
    14761 tggacaattt gtttcatcgt aaatttcaaa ttcaaaattt cctagagtaa agagtggtaa
    14821 attttcaggt aatttcgcat tatcttttct tggagatttt aaattttcta ctgcacaaaa
    14881 accacgattt gccaatgctg caaaacctac aacaatacca cctaaacttt caatgatttt
    14941 tgcactctct aaagcactac cacctgtagt aatgatatct tcacaaatta taaatttttc
    15001 accctttttt acttcaaaac cacgtcttaa agtcatttct ttatttactc tttcagtgaa
    15061 gataaaacgt ttactacaag ctcttgcaag ctcataacct gctaaaattc cacctaaagc
    15121 aggagagcaa atgctatcaa attctatctt atagcttgca ataatctttg caagttcatc
    15181 acaaagtttt gctgctaatt ttggatcctc taaaactttt gcactttgaa gataaaactg
    15241 cgaatgctta cctgaactta gtaaaaaatg cccttctaaa taagcaccac aatctttata
    15301 aatttgctct aaattcatcg ttaaaccttt aaaagttcac tttctttgct ttttacaccc
    15361 tcatcaattt ttgttgtata ggtgtcggta agtttttgca cttcatcata agcttttttt
    15421 gcttcatctt cgcttattgc cttatctttt tctagttttt taactgcatc gttggcatct
    15481 ttgcgtatat ttcttataga aacttttgcc ttttcaccca tagctttagc ttgttttacg
    15541 ttttcttctc tttgctctct agtcatcgga gggaaaaata attttacact ttcgccgtca
    15601 ttgtttggat tgacaccgat atttgcagct gcaatagcgc tttctatggt ttttagtaaa
    15661 ggtttttccc aaggagtgat gctaatagtt gaagcatcac ttgctaaaac agttgctact
    15721 tgatttaaag gagtttgagt tccataataa tccactgtaa tatgatctaa aatatggata
    15781 ttaacttttc cagttcttaa agtggtaaag tcttttttta aggcttctaa agatttttca
    15841 ctttgggttt tttgtttgtt aaaaatttca tttagcatta tcatttcctt taattattta
    15901 cttgaattaa catcgcttgg aagttgtggt gcacttggag cgatagaatt tgtgtttggg
    15961 gtagtaggca caataggagc acttggaata gtagtgttgt tgttttctac tttaattttc
    16021 tctgctagag agtccttgct agctttattg tataaataac caagaccaat agtatttgca
    16081 ataagtaaaa ttcccatgac aaaggtaaat tttgccaaaa atccagccgg tcctttggcg
    16141 ccaaataaac tttcattgct tccactataa gctccaagtc ctatacttga acttttttga
    16201 agtaaaactg ctatacaaat aactacaacg atgataaatt gtaaaatgat taaaagagtg
    16261 atcattgaaa tttcctaaaa gttaattttt aaatgattat tttagctaaa taaaacttga
    16321 aaagttttga aacttgaaaa gtttttgtga gaaaaatccc acaaaaactt atctgctatt
    16381 gaagcttctt aagatattaa gtaaagatac gaaaagatta acaaaatcaa gataaagtgc
    16441 tactgcacct tcgattggag tttcataatt tccgcggata atattttgcg tatcataaag
    16501 aatgtaaaat gaaaataata ttgcagctac tgctgaaata gctagattaa ctatactgct
    16561 ttggaagaaa aggtttagta aagatgctgc tacaataacg attaatacta taaataaagc
    16621 tttacccata acagtaaaat ctttttttgt attcatagca aatacactaa gtcctgcaaa
    16681 agcaactgtt gttaaagcaa aagcttgagc gatgataatt cctccagctg gtagagctaa
    16741 aactgaaata agtaaaggtg taagcgttaa acctgagcag aaagtaaaac caaaaagtaa
    16801 aacaagattt aatggagctt ctcttttttt ccattgcaaa gcaaataaaa gtccgatttc
    16861 aacagcaaaa aggatccaaa aagttacttg tgattgtata aaaaatgatg ctaaagcaaa
    16921 aattcctaca tacgcaccta ctgttgcagc taataatgaa gcagcaaaaa gttgataagt
    16981 ttgtttaata aaaatactta attcgcttga gcgtgtattt tcaaattctt ttgatcttga
    17041 gtagtctcta tcataaagac tcataaaatt ctccttgcaa aattgttaga ttttttaaaa
    17101 tcttgagcga aatctaacat attagactaa ataaaaagtt aatttatata atatcttatg
    17161 cttaaatgaa atctttgctg aaattttgtt ataatttcaa gattttagtt tcaggttggt
    17221 tttatggaaa atcttattag cggtgcgatt aagtttatgc aagaagactt taaggagcat
    17281 gaagaacttt ttgaaagtct aaaaaataag caaaatcccc atactctttt tataggttgt
    17341 tctgattcta gagtaattcc aaatttgatc actaatacgg gtccaggtga gctttttgta
    17401 atacgaaata ttgcaaatat agttccacct tatcgcgttg gagaagatta cttggcgaca
    17461 acttcagcaa tagagtatgc tttaaattca ttgcatatta aaaatatcgt cgtttgtggc
    17521 catagtaatt gtggaggttg caatgctctt tattattctg atgaagagtt aaataaaatt
    17581 cctaacgtga aaaaatggct tactatgtta gatccgataa aaaaagatgt gatgattttt
    17641 gcaagagacg atttggctat gcgttcatgg cttacagaaa aattaaattt agtaaattct
    17701 ttgcaaaata tacttactta tccaggcgtg caagaagctt tagatgaagg aaaaatagaa
    17761 gtacatgctt ggtattatat tatagagaca ggtgaaattt atgagtatga ttttaaagca
    17821 aaaattttta ctttaataca ggataggaaa gttcaatgaa aaaaattatt tttagtttat
    17881 gtttttttat tttacacctt ggagcacaag aatttaaatt tattgatgcg aatattagta
    17941 aagaagatga aggaatttat gctttagttg aaaaatatgt tgatcttaac aatcaaatta
    18001 aagaatttaa gaaaaacaat gatgaaaatt caagcacttt taatggtatt ttaagtgaat
    18061 ttgaaaaaga caaaaagact attttagcaa aaatacccga tatgatagta ggacaaaaga
    18121 ttaatgaaga ggcagtggct agatttttaa aagcaaaaga aaaattacta gatgttcaaa
    18181 aaaagaatat taataagcct tacatttata cagatgccac tcttaatcta gtttatttta
    18241 acattgtgga aagtttttat tcttctttgt ttgaagtgga aaaacttttt aaaaatacag
    18301 caagcagtga agatttgatt gctactgttg ataaggcaat ggaaaattta caaaattctt
    18361 ctaatgttaa tttagatagt tttaaaagca aaattacaaa tccagaagaa ttagaaaaaa
    18421 ttaccctaaa agaaagatat atcagtaatg ccgtagattc ttattctgaa attcttaagt
    18481 atttacgttc aaatgcagat ttgcttgaaa gtaattatat tttttcatta ctcgagcttc
    18541 aagtttggat agatcgtata aatgaggcaa ttggggtaag ttttgttaat atcggaaaaa
    18601 tagtaatttc tgctttggtt ttagtatttt ttatatcttt aagacgtttt tttgcaaata
    18661 tagtatattt tttccttgtt cagctttttt atagaaataa aaatgatgta gatgatatta
    18721 aagtcatttt tattgagaat attaaaaaac ccgtaggttt cttgttgatt gtctatgcta
    18781 tttctctttg tcttactata gcaacttatc ctgcaccttt gagtgtaaat ttaagtaatt
    18841 tttttcatat agtttatgca gttttaattg catggcttat tttaagaatg cttgatggtt
    18901 atggcgtggt attggtttct aaacttgctc aaaaaagtgg aaaaaaagaa gttgtaaatt
    18961 taattattaa aattttatat tttgtcatta ttatcatagc tttattatat attcttgctc
    19021 aacttggttt taatatttcg gctattattg catctttggg aattggtggt ttagctgttg
    19081 ctttagcggc gaaagatatc attgcaaatt tctttgcttc tatactctta ctttttgata
    19141 atagctttaa tcaaggagat tgggtagagg tttcaggcat agaaggaact gtggttgaaa
    19201 caggacttag aaaaactact attagaactt ttgataattg tcttgtattt ttaccaaatt
    19261 caactattat gggagctaat atcaaaaatt ggagcaaaag acgcatgggt cgccatgtta
    19321 gaatgtattt gggtgttggt tatgatgcta ctcctgaaaa actagaacaa tgtgtaaaag
    19381 atctaagaga atttttgcat acaagtgatt tagtagctca cgatgaggat agcgcattaa
    19441 aatatggcga tcatacaaca aaatatcgtc aaaatcttgt atctattaat gatttagaag
    19501 gctataaaaa tgcttgttat gtggctttaa gtgaatttgc agatagtagt attaatatag
    19561 agctttattt ttatatcaaa gaaataggtg gaaaagattt tagagaagct agacaaagtt
    19621 taatgcttga gtttatgcgt ataattgaaa aaaatggttt aacctttgct ttcccaagtc
    19681 gtagtattta tatagaaaat ttaccacccc ttgatttgca agcaaaagct ataaaatagc
    19741 aagattttat cttgctattt tttaaaccgg cataacgcgt atatttggac ttaattcttc
    19801 ttgtaaaatt gtttcaatag cataaagtgt tgcaccactt ccactagaac aaccactaca
    19861 agcaccaaga taacgaatat aaacatcaat tgctgcacct tcagcctttt gtatatcaat
    19921 cacttccaaa tctccgccat cattatgaag catagggcga atttcagcat ctaaaacact
    19981 ttcaactgct tttaattgtc ccactacggt catttcatca aaagctacat cacttttcat
    20041 tgtatttttg agtttttctc tatctatttc agctctagtt tcagctaaaa tatctacaag
    20101 gtaataatct cttttttcat gtccgcctgg tttgatacag gatttacaaa aagcacccgc
    20161 tttagtgtat tgtgtgattt cttctacgct atgcaaatca ttaagtttaa tcacttcttt
    20221 aatagttcca agacttaccc tagcgcattc gcaaactata atttgatctt caaaatcttc
    20281 aggacttata cctttataat gcgctgctgc ttgtttgatt acatcataag ccataaccga
    20341 acagtgcatt ttttgaggtg gaacagctgg agtttctgga ttatcacgca tagcaaattc
    20401 cacatctaaa tttgtgattt ttactgcttc atctacagtt tttcctatac aaagatccac
    20461 catagtatca ctacttgcta tagctgtacc acaaccaaaa cttttaaatt ttgcatcgat
    20521 aattttatca gttttttcat ctacaagcca aaaaagtctt actgcatcgc cacaactttc
    20581 tgcaccaaaa tcagctacga tcaattttgc attgcgtgct ttagcatctt cttcactaaa
    20641 ttctcccata tgttgaggat tattcattct atcttgaact ttttgtgaat actcatccca
    20701 aatggatcca ccaattaaac tattttttcc catttttcat ccttatttgt aattatttgg
    20761 attataagca taagtacaag aaattgctct taatctctgt gttgcatttt taatttgttt
    20821 tgctgcataa tcaatttctt cttcagtgtt aaaacgtgac aaagaaagcc ttaaagctgt
    20881 atgcgctaaa tcatgctccg caccgatagc ttccataata ggattgcttt ctaaagcttc
    20941 acttgcacag gctgagcccg tacttgcagc tataccattt ttatttaaat cccaaagcat
    21001 tgcttcgcct tcaacacctt taatacttgc taagattgta ttaggcacac ggtgttccct
    21061 ttttccaacc actgttgtat cgggcaaggc caaaatttga tcttctagtt tatctcttaa
    21121 acggcgtata tgagaatctt caaaatcaag catagtattt gcaatacgca aagcctcgcc
    21181 catagccact atgtaaggca catttaaagt tccgcttcta cgaccaccca tgtgttctcc
    21241 accgtgtaaa agtggagtaa gtttaagtcc tttttttata aaaagtccac ccacaccctt
    21301 tggtccatga aatttatgtg ccgaaaatga agcaaaatca actcctactt gagttaaatt
    21361 aacctttatt ttacctactg cttgagtagc atctgtatga aaaagagcac caaattcatg
    21421 cgcaagttct gccatcgctt taatatcaaa aatcatacct gtttcattat ttgcccacat
    21481 aacacttaca agtgctgttt tatcgctaat cactttacgc aaatcttcta cagtagaaac
    21541 cccttcttcg tttacaggaa gttctataac ttttactcca agacttttta aaaaataagc
    21601 agcagcagta acagcagggt gttctacact agaaataatc acttcattgc gttctttatc
    21661 taaaatatga tcaaaataca cacccttaag cacccagtta atgctttctg tcgcacagga
    21721 ggttacaact atgtcatcta ggtcatttgc tccaagtcct gcataaagtt tatccaaagc
    21781 ttctcttaag gcaggatgtg ttgcgctacc atattgatga aggctatttg gatttccata
    21841 catatccttt aaaaaaggta gcatcaactc ataagcatta ggatcaagca ttgtcgttgc
    21901 gttgttatct aaatatactt tcactttaaa atccttaatt tatccttaat tttaattagg
    21961 atatttttta tctttattta aaaacggata ataacaaaaa tttataaaaa ttaggttaaa
    22021 aattataaca aaaataaaat gctaaagtaa aattttaaag tgaaatattt tgtgaatttt
    22081 atatagcaaa aatgagaaat actatttctt aaatttttct tcgtaatact ttactatttt
    22141 tgaatcttct ttggctgtat gtttaaagat aaaatcttga acaacgagat ttaatttttc
    22201 ggtcattata tttacaaatt tagcttcact gatgataatt tcttcaattt ctaagataat
    22261 ttttctgtga attcttgtat gatggttgat ataaggatat tctatttctc tcataaaggc
    22321 ttcttcatct gaaaaatgtc tattgatcat tattaacaac tctcttaaga caatttttaa
    22381 ttcttttgtt ccaacatgac gttggttcat taaagagagt tttttagaaa tttcaaaaag
    22441 ttctttatgt tgatgatcta aaagatcatt attcattgaa ataatttttt cattataagt
    22501 catggttttg agtactttta tatttatatt t
//
LOCUS       DAPIWQ010000010        22239 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.010, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000010 DAPIWQ010000000
VERSION     DAPIWQ010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22239)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22239)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22239
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.010"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..279
                     /locus_tag="RJ267_000282"
     CDS             <1..279
                     /locus_tag="RJ267_000282"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388167.1"
                     /translation="LDLKIQNLILEKNKQNISLQGNLNINNSYQAKLQVISLDEPDEI
                     FPWTKDYGGLNQYFLKENNNFFLNLSYDSLANPQLKINGSEFSNMDLN"
     gene            279..1460
                     /locus_tag="RJ267_000283"
     CDS             279..1460
                     /locus_tag="RJ267_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7388168.1"
                     /translation="MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAG
                     SGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKT
                     QQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQE
                     KMKFNIDKEAKNFLLKSADARAMLNLLEFVLVLDEKHISLENLKKLRNTISSEGASSK
                     DTHYILASAMIKSLRGSDVDAAIYYLARLIDAGESADFIARRLVIFSSEDVGNADPNA
                     LNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEI
                     PNYLNNNHQEKQNYLYPHDFGGWVEQKYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHK
                     A"
     gene            1523..2251
                     /locus_tag="RJ267_000284"
     CDS             1523..2251
                     /locus_tag="RJ267_000284"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HDV7388169.1"
                     /translation="MIKIGIYGAKGRMGKQIEECLKSETQAQISILYDKGGNLEELFE
                     KSDVIIDFSSPSGTHELLNYARTMPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNM
                     SLGVAVLNYLASKASQMLKNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEK
                     VRVSGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG
                     AIKIAIWLSKQEAKMYSINDFLGI"
     gene            2253..3590
                     /locus_tag="RJ267_000285"
     CDS             2253..3590
                     /locus_tag="RJ267_000285"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDV7388170.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKNIKT
                     IKAKGEVSQIFNPDNLKTLEGEIAIGHNRYSTAGNSSLNDAQPIAATSVLGDIALAHN
                     GNLVNKEEVRSRLIQDGAIFQTNMDTENVVHLIARSKQESLKDRFIESLKECIGAYCF
                     VLASKDKLYVVRDPHGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMLIF
                     TQGNDKFESIELFSQTPRICAFEYIYFARPDSIVEGKSVYEVRKKMGEALAKKFAYKA
                     DFVVPVPDSGVSAAIGFAQYLQIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     RKVLEGKEIVVIDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNAEEVREYVEADTLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(3593..4978)
                     /gene="fliI"
                     /locus_tag="RJ267_000286"
     CDS             complement(3593..4978)
                     /gene="fliI"
                     /locus_tag="RJ267_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HDV7388171.1"
                     /translation="MNLEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEATKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPINIQNSASRVMSDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAISKKEFMQKFLGQNPEESFEFNQTLELLSQIDTPNTPLPPTQNINVGS
                     ASATLPNPNLK"
     gene            complement(4978..5550)
                     /gene="folE"
                     /locus_tag="RJ267_000287"
     CDS             complement(4978..5550)
                     /gene="folE"
                     /locus_tag="RJ267_000287"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HDV7388172.1"
                     /translation="MQKKFEDCVKTMLEIIGENPNREGLIKTPNRVFKAYEFLTSGYT
                     QNVKEILNDALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRAHVAYIPNKKVVGLSKI
                     PRLVEVFARRLQIQEQLTEQIAQALMENVDAKGVGVVIEARHMCVEMRGVQKANSTTT
                     TSALRGIFLKNEKTREEFFSLINSAKQVRF"
     gene            5693..7027
                     /locus_tag="RJ267_000288"
     CDS             5693..7027
                     /locus_tag="RJ267_000288"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HDV7388173.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKSVKMDGF
                     RPGKVPVSAVLKRYERELTQDAEQNLFKSAVNSALQELKKENKELVGEPYFEKFDRKD
                     GEIIAELILSFKPEIKLEGYEKLIPEYQTPKVSKKEIDEKKDELLKRFATPEAIKTKR
                     ALKEGDFAKFDFEGFVDDKAFEGGKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIK
                     VTFPKEYGAAHLAGKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKL
                     KEQIKNEKLFKLVNDELKGKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFNDIFIPKTEKSEKVSKKEKEDK"
     gene            7027..7611
                     /gene="clpP"
                     /locus_tag="RJ267_000289"
     CDS             7027..7611
                     /gene="clpP"
                     /locus_tag="RJ267_000289"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HDV7388174.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQK
                     VAKIAKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            7647..8174
                     /locus_tag="RJ267_000290"
     CDS             7647..8174
                     /locus_tag="RJ267_000290"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HDV7388175.1"
                     /translation="MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGV
                     GLAAIQVDIPLRVLLVNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDF
                     FEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQKF
                     DKEFKKKKKNHKKEK"
     gene            8171..9676
                     /locus_tag="RJ267_000291"
     CDS             8171..9676
                     /locus_tag="RJ267_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HDV7388176.1"
                     /translation="MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVE
                     RIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDLAIALLILLQNEELDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
                     FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALG
                     MHNILFEGSPGSGKSMCAKRLVYIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHP
                     HHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLY
                     VAMDEISKDDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAK
                     DTLDLAISRYNLSLRSLNKILKVSRSIADLEQSLNISKTHILEALSFRARN"
     gene            9678..10376
                     /locus_tag="RJ267_000292"
     CDS             9678..10376
                     /locus_tag="RJ267_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HDV7388177.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEVIIKRIYGDWTQ
                     KNIQGWREQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKNIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDKDESKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFHPQNYGFKNFRALIQKFLPKMKKFEEEREK
                     NIYFLVKKDYESYY"
     gene            10360..11730
                     /locus_tag="RJ267_000293"
     CDS             10360..11730
                     /locus_tag="RJ267_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HDV7388178.1"
                     /translation="MKAIIDNIKILEQNAINKGLDELILMENAGLNLAKLIKKEAKKI
                     RIQRKIRKVKILFLLGGGNNASDGLVALRNLKHAKAYKIGFKENTLFKKQEQILQNYA
                     FKFCKKEPNFKKFHIIIDCILGTGSNRCLDEKTSLIIQKVNQSKALKIACDIPTNLGF
                     YPCFKADITFCMGALKEILLEDFAKEFVGRIKIANLGIRSKKFYPNSQAFLLEKKDLK
                     TIDRKINANKGNFGHIYIVANASAGTLAGLGALNFGAGLVSLVAQKSFSPLLMLKEKI
                     ENNASAIALGMGLENLDFLKDEILQNTPLILDANCFLSEALLWYLNRKDVVITPHPKE
                     FIKLYKMCFDENLDIETLQKNRFFYARKFSQNYDCVLVLKGANPIIVQKEKLFVVNLG
                     NQALAKGGSGDVLSGMIAAHLGFGFSALEAAKNATLAHGLVAKKYKFNKNSFDALKLI
                     KGLKCL"
     gene            11721..12287
                     /gene="purN"
                     /locus_tag="RJ267_000294"
     CDS             11721..12287
                     /gene="purN"
                     /locus_tag="RJ267_000294"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HDV7388179.1"
                     /translation="MLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEVVLCICNKKD
                     AFGVQRAKKFGLDTVIVDHKAYNTREEFDTILVQKIKESGANLTVLAGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDGGMIIAQKAFEKR
                     NLSFEEFEEKIHSLEHEILPLSVIEIFS"
     gene            12359..13078
                     /locus_tag="RJ267_000295"
     CDS             12359..13078
                     /locus_tag="RJ267_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HDV7388180.1"
                     /translation="MFEWIFSIDAWITLATLSALEIVLGIDNIIFLAILVSKLPPEHR
                     DKGRILGLAFAMITRILLLLSLFWVMKLVTPLFSVLGNEISGRDLVLLLGGLFLIVKS
                     IKEIKEQISHQEESQSHFKASNKLWIVVAEIAVIDIVFSLDSVITAVGIAQDVTIMII
                     AVIIAVAVMLFASKPIADFVEKYPSIKILALAFLVLIGVVLVAESFDIHIDKAYIYTA
                     MAFALVVQILNILDQRKEKNG"
     gene            13071..13280
                     /locus_tag="RJ267_000296"
     CDS             13071..13280
                     /locus_tag="RJ267_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HDV7388181.1"
                     /translation="MAKDANGIELNTGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KEGEIEARVDKFGVIVLKTEFLKKI"
     gene            13290..14474
                     /locus_tag="RJ267_000297"
     CDS             13290..14474
                     /locus_tag="RJ267_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HDV7388182.1"
                     /translation="MRILLVLRGNYYAGQEEFIKNNKLQNYTLDLNALRLLSGSVKNI
                     VSEYKILNVKNDEDLSKILLKLLEMRMQKGEFSIINAYNETLKIYKDLAKQYRYKIYV
                     IVFDSSLKQCQEKNLLEAKKNGYIIPYALLEKTQDLLKKNPKKYPILDSRDWKKCLYQ
                     MPNLSKYKKIHHIGDLQGCYSVLKEYIKTIKEDEFYIFLGDYINRGIENGKVIKFLLK
                     ICEKENVCLLEGNHERHLIKWANGELSNSKEFNENTLKDFRKEKLTPRDARKLYPHLK
                     ECLYYKFQNKFIFCSHGGVNFIPSKPEKISFIPSHDFIYGVGGYEDSQKVANQFCNFT
                     SDNLYQIFGHRNKEKLPMKIAKRVFLCEGKIDDGGYLRVVTLDEKGFECIEIKNQIYK
                     KK"
     gene            complement(14487..15845)
                     /locus_tag="RJ267_000298"
     CDS             complement(14487..15845)
                     /locus_tag="RJ267_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HDV7388183.1"
                     /translation="MDPSQVLDLNQTSTASFDAGYSILMVVVALALVFLNGFFVLSEF
                     SIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIA
                     KMLEIPLINLGFSTVIIHTMAFIIAFSIITLLHVVLGELVPKSIAIAVADKAVLFIAR
                     PLHWFWMLFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEEEIKIIASESQKGGVLD
                     EFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQIICEHKHTRFPYIDGS
                     KDTILGMIHIRDIIQNELNHKSQNLDTFVKPLILVPENISISKVLVMMNKERSHTALV
                     VDEYGGTAGILTMEDIMEEIIGEIKSEHEEDSYKKLAENIYEFQGRCDIETVEEMLVI
                     NYDEDLEQVTIGGYVFNLLGRLPMVGDRIEDELCYYEVKKMDGNSIERVKVVKKTNKD
                     EE"
     gene            complement(15944..17149)
                     /locus_tag="RJ267_000299"
     CDS             complement(15944..17149)
                     /locus_tag="RJ267_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HDV7388184.1"
                     /translation="MIMFSSFFKSKKWALWAYLGLFLLLFFLYIQTSLNVAINSWYSD
                     FYNVLQKPKIELLDSNSTQKIEENLENNATLIQEANQRAEQNFQKANFINKGALYYYQ
                     NLLEYFFNSRAMIEKPNYSASDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREA
                     MTFSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIKALMTLVAFIPILWSL
                     SDVVSKALFANLSENSFFYFLKNIDGLLVYIALLISLGGLVVSWFVGIKLPGLEYNNQ
                     KAEAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMI
                     VIVPFLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSIFITNWTTITQLRSIYKRLKE
                     FEKNISYKS"
     gene            complement(17195..17941)
                     /locus_tag="RJ267_000300"
     CDS             complement(17195..17941)
                     /locus_tag="RJ267_000300"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDV7388185.1"
                     /translation="MKSSVIFGFVLSLILHTLVLMFFLFSFYTQEKSSGVDFKQGAEF
                     TSIMMVSEFPIGELKEVSIDQKKSNSQDKNKKQDERISFNSQDKNAVLKVQKKIEKQD
                     ENQAQKEIANASENSKFKNESLSAPLQSNKDKTQTIVSGNAKEQVKSYQALLMAHLTK
                     FKKYPQEAIMQKQEGVVRIRVSIDESGNVLSKELKKSCPYAALNDEALSLFKRASPLP
                     KPPKEMLKNGDKISFVMPIDYNIKDYLGKK"
     gene            complement(17943..18353)
                     /locus_tag="RJ267_000301"
     CDS             complement(17943..18353)
                     /locus_tag="RJ267_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HDV7388186.1"
                     /translation="MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIK
                     IELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLSLENLSSALDIKTKGNKEEIIYF
                     HIDKSVKYEDIMQVMQKLKENGYGKIALSSKKMD"
     gene            complement(18340..19101)
                     /locus_tag="RJ267_000302"
     CDS             complement(18340..19101)
                     /locus_tag="RJ267_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HDV7388187.1"
                     /translation="MLKKCFYFVFLLLNLNAEANATDTNLSFDSSKIETEAPKIELSL
                     SSLYQNADEVVKGVIYILVLFSILAWAVFISKLMQFYFMKKNLDLSIQKIKELKNLNE
                     LDQTKDFAGVLSLEIQDELEKSEYKNDHIKERIELRLQNTISKQITASKNGLSLLASI
                     GASAPFIGLFGTVWGIMNAFIGIANLGNASLAVVAPGIAEALFATAFGLIAAIPAVLF
                     YNYLTRKNLKLMHHLDELANFVYILFHRSYFNDKN"
     gene            complement(19113..21380)
                     /locus_tag="RJ267_000303"
     CDS             complement(19113..21380)
                     /locus_tag="RJ267_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDV7388188.1"
                     /translation="MKKLSLFCAVGLCFASFAFSEELEFDSLEISGSKIKNDEKPFVT
                     PGATSTREGIGSDTQSIDSIVRSIPGTYTNTDQAQGTVQVNIRGMSGFGRVNTMIDGV
                     TQTFYGSASDDPARFHSQTGTSAFGAVIDTNFLIGVDVTRGTFEGVGGANALMGSANF
                     KTIGINDIVHDGNIFGFLGRFSYGSNGIGPSYMSAVAGKTELENNGYVGALFGYSAKR
                     ITQNYTVGGGGKIGSSMVDTDGDGIADTNIAPFDPDFLTQKPNSQLFKLEYVPNSFTN
                     TIFSYRRYQNELAGRKIHNDNYQLDFWHNPNEWLNVNTLIAYNQGIQTYGSKSTFAAN
                     DAIANTKAKNTATTFDISDTLEGEWHRFNLNIRFGANILLNDYKNTLNTSIQGVNSIP
                     FQPRGKQNLFTYYLDNSLNYGIFTLDTNVNLLDWNIKGHRPACDEVNFMCFPKAATDI
                     DKNGLRLNASVMLSAAIHELITPFVSFARTNRAPNVQEMFFSNNEGNGINSFLKPEQA
                     NTWQIGFNSFKHGLLKDDDRFGFKAVYYHTKIKDYIYNEQFYLEDPSKDPPSSQFYMH
                     LNSADDTIFKGVELELSYDLGFAYAKAMYSRQDTSSTISQTSGPLLGSFSASKIMELP
                     KDYANVELGFRLNDKISFGGIAKYTGKAKRVNPNTDDWNKDPNNPYYPKPTTQDLPKI
                     PIIVDLYWNIEWFKNLTMRAEVQNLFDKNYMDALNAYNSLDNQLQYNGAGDPIYLFSN
                     SARGRTFIVSFEYKY"
     gene            complement(21377..22228)
                     /locus_tag="RJ267_000304"
     CDS             complement(21377..22228)
                     /locus_tag="RJ267_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HDV7388189.1"
                     /translation="MKFYTILSILFISFMLSACAVLQKSSPLQENKDFYILDTHTQKK
                     ISFEDMILELLKADVILLGEKHDEVKHKISQVMIFNALEGNLSSQNINFDVALEMLAS
                     TEQNHLDKAFKNKKTIKANELTNALNWDKVWKWKDYEQFVNVVFYSKSKILGANLSRS
                     EITSIYNGAQPLKGYVSTTNEVKKQLFDIISLSHKLNPEENKELLDKLVEIQQFKDRR
                     MADVLVHHVNKVLLLAGSYHTSKKIGIPLHIQDFKSSKKIVVVNLSYGEIDLKDSDYV
                     LIYKGEE"
BASE COUNT         7930 a         3324 c         3547 g         7438 t
ORIGIN      
        1 cttgatctaa aaatacaaaa tttaattctt gaaaaaaata aacaaaacat cagtctacaa
       61 ggcaatttaa atatcaacaa ctcttatcaa gcaaaattac aagttatcag tttagatgag
      121 cctgatgaaa tttttccttg gacaaaggat tatggaggtt taaatcaata ttttttaaaa
      181 gaaaataata acttttttct aaatttatct tatgatagct tagccaatcc tcagctaaaa
      241 attaatggta gtgaattttc aaatatggat ttaaattaat gagcctagct ttgacctttc
      301 gccctgaaaa ttttgatgat attttaggac aatatgagct tatagaaatt ttcaaaaaat
      361 ttactgcttt acaaaaactt cctcatagca ttttttttgg aacagcaggt tctggaaaaa
      421 caacttttgc tagagttgta gccaaagaat ttggcttaga tttttatgaa tttgatggag
      481 gaaattttaa actcgaagaa ctaagaaaaa ttttagataa ttacaaaaat agtctttata
      541 aacctttaat ttttattgat gaaattcacc gccttagcaa aacccaacaa gaaatgcttt
      601 taattcctat ggaaaattac cgtttaattt taatcggcgc aagcactgaa aatccctatt
      661 ttgttttaag ttctggtata agaagccgtt ccatgctttt tgaatttaaa tctttagggg
      721 taaaggaact tgaaacttta ctcttgcgtg tacaagaaaa aatgaaattt aatattgata
      781 aagaagctaa aaattttcta cttaaaagtg ctgatgcaag agctatgcta aatttgcttg
      841 aatttgtctt ggttttagat gaaaaacata tcagtcttga aaatcttaaa aaacttcgca
      901 acaccataag tagcgaaggt gctagctcaa aagatacaca ttatatttta gcaagtgcaa
      961 tgataaaaag tttacgtgga agtgacgttg atgcagctat ttattatctt gcaagactta
     1021 ttgatgcagg agaaagtgcg gattttatcg ctagacgttt ggtgattttt tcaagtgaag
     1081 atgttggaaa tgccgatcca aatgctctaa atttagcagt ttcgactcta gaagctgtta
     1141 aaaatatagg ttatcctgaa gcaagaatta tcctagccca atgcgtagtt tatttagcaa
     1201 gcacaatcaa atctaatgca agctacaaag ctatcaatga agctttaaac tatgtaaaaa
     1261 ataatgaagc tttagaaata cctaattatc ttaacaacaa tcatcaagaa aaacaaaact
     1321 atctttatcc gcatgatttt ggtggctggg tagagcaaaa atatcttagt aaaaatttaa
     1381 aattttatca tagcaagggc ttaggagaag aagcaaaatt gttagataat ttatataaat
     1441 taaaaaacca taaagcttaa ttttattatt taaaatttac aaaataaatg ctaaaatcaa
     1501 tattttattt tcaaggaaaa agatgattaa aataggaatt tatggcgcta aaggacgcat
     1561 gggaaaacag attgaagaat gtttaaaaag cgaaacacaa gcacaaattt cgatacttta
     1621 tgataagggt ggaaatttag aagagctttt tgaaaaaagt gatgtgatta ttgatttttc
     1681 ttccccaagt ggaactcatg agcttttaaa ttatgcaaga actatgccta aacctttggt
     1741 aataggtaca acaggacttg atgagaaaat tttacatttg atgcaaagtg ctagtgaagt
     1801 gatgccgatt ttttatgcga ccaatatgtc tttaggtgtt gcagttttaa actatcttgc
     1861 tagcaaagca agtcaaatgt taaaaaattt tgatatagaa attttagaaa tgcatcatcg
     1921 ccataaaaaa gatgcaccaa gtggtacggc tatgacttta gcccaaagtg tagcaaaagc
     1981 tagaaattta gaacttgaaa aagtaagagt aagtggaaga gatggcatca taggtgaaag
     2041 aagcaaagat gagattgctg tgatgagttt aaggggtggc gatatagtag gacgccatac
     2101 agtaggtttt tatgaagatg gtgagttttt agaacttaat cataccgcta cttcaagggc
     2161 aacttttgct aaaggtgcga ttaaaatcgc tatttggctt agtaagcaag aagcaaaaat
     2221 gtattcaatt aatgattttt taggaattta aaatgtgtgc agttgtagga gttatcaatt
     2281 caaaaaatgc tagcacttat gcgtattatg cgctttttgc tatgcaacac cgtgggcaag
     2341 aagcaagtgg tatcagtgta agcaatggta aaaatattaa gactattaaa gccaaaggtg
     2401 aagtgagtca aatttttaat cctgataatc taaaaacttt agagggtgaa atcgctatag
     2461 ggcataatcg ctattctaca gcaggaaatt caagtttaaa tgacgctcag cccatagcag
     2521 ctacttcagt tttaggtgat attgctttag cgcataatgg aaatttagtc aataaagaag
     2581 aggtaagatc aagacttatt caagatgggg ctatttttca aaccaatatg gacacagaaa
     2641 atgttgtcca tcttatcgca agaagtaagc aagaaagtct aaaagataga tttattgaga
     2701 gtttaaaaga atgtatagga gcttattgtt ttgttttagc aagcaaagat aaactttatg
     2761 ttgtaagaga tcctcatggg gtgcgtcctt tgtctttagg gcgtttaaaa gatggaggct
     2821 atatagttgc tagtgaaact tgtgcttttg atcttataga ggctgaattt attcgtgatg
     2881 ttaaaccagg ggaaatgctt atttttactc agggaaatga taaatttgaa agcatagaac
     2941 ttttttctca aactcctaga atttgcgctt ttgaatacat ttattttgct agacctgata
     3001 gtatagtaga aggcaaaagc gtgtatgaag tgcgtaaaaa aatgggcgaa gctttagcta
     3061 aaaaatttgc ttataaagca gactttgtcg tgcctgtgcc agatagtgga gtaagtgcag
     3121 ctataggttt tgcgcaatat ttacaaatcc ctcttgaaat ggcaatagta agaaatcatt
     3181 atgtaggaag aacttttata gagccaactc aagagcttag aaatttaaaa gtaaaattaa
     3241 aacttaatcc tatgcgtaaa gttttagaag gcaaagaaat cgtagtcatt gatgatagct
     3301 tggtgcgtgg cactacttct aaaaaaataa tttctttgct tcgtgctgca ggagcgagca
     3361 aaatccatct tgccatagct tgtcctgaga tcaaatttcc tgatacttat ggcatagata
     3421 ctccaacttt tgaagaactt atcagtgcaa ataaaaatgc tgaagaagtg cgtgaatatg
     3481 tagaagctga tacgctaagt tttttaagca tagaagagct aactcaaagc ataggcgatg
     3541 aaaggaaata ttctttaatc agttttgatg gagattattt tattaaataa ttttatttta
     3601 aattaggatt aggcaaagtt gcacttgcac ttcctacatt tatattttga gttggtggca
     3661 aaggagtatt tggtgtatca atttgactta aaagctctaa agtttgatta aattcgaagc
     3721 tttcttcagg attttgtcct aagaattttt gcataaattc ttttttagaa atagcttcat
     3781 caagttcttt atcacttcct ttctgataag caccgatgcg aagcaatact tcattttctt
     3841 ttaaaagcga gtttaaacgc ttaaattttc ttgcccaaag tttatgttca ggacttataa
     3901 tgtcactcat cacccttgaa gcagagtttt gtatattaat aggaggataa attccaaagt
     3961 ctgttaattc acggcttaaa acaatgtgtc catctaagat agaacgactt tgatcggcga
     4021 ttggatcgct catatcatca ccatccacta aaacggtaaa aaaggctgtt atagtgcctt
     4081 taccttcttc tttaccggtt ctttccatga gttgaggcaa aagacttaaa acacttggtg
     4141 gataaccttt ggttgtagga ggctctccaa gagctagtcc aatttctctt tgtgccatag
     4201 caaaacgcgt tacactatcc atgataaaaa gtacatcttt gccctgttct ttaaagtatt
     4261 ctgccacact cattgcgcaa aaagcaccgt atttacgcat caaagcacta tcatcacttg
     4321 tagcaacaat aatcactgta tcatcgagct ttccgcctaa atttttttgt ataaattcag
     4381 gaatttcacg ccccctttct cctatgagtg ccactacttt tataggagct ttggaatttt
     4441 taactatcat tcccataaga gtggattttc ctaccccact tcctgcaaaa ataccaagtt
     4501 tttgtcctac accacaagtt aaaagcgcgt ctatggtttt aacacccacg ggaaaaactt
     4561 cttctataag ccctcttttc attgcatcaa taggtgcacg cattataggc atatatttgg
     4621 ttgcttctat agctccttta ccatcttttg gacgcataaa aggatctact accctgccta
     4681 aaagttcatc gctaacgcct atttgcatac ctgcatcact tataaaagca cgatcgccta
     4741 ttttaaaacc ttctataaaa gaaaatgggc ttaaatagct aaattgttct ttgatttcta
     4801 caaccatagc tagagtgttt aaattttcat tttcattaga aactaacttc actatatctc
     4861 caacccctgt tttaagccca cgaatttcta tacttgtagc agaaattttt gtaatctctc
     4921 caaaaatagc acttaaattt tctttgccaa gtttggagcg tagtttttca agattcatta
     4981 aaatcttacc tgtttagcag agtttatgag agaaaaaaat tcctctctgg ttttttcatt
     5041 ttttaagaaa attccacgta aagctgaagt tgtagtggtg gaattagctt tttgcactcc
     5101 acgcatttca acacacatat gtcttgcttc tatgactaca cccacacctt ttgcatcgac
     5161 attttccatt aaagcttgtg cgatttgttc agtaagttgt tcttgaattt gaagtcttct
     5221 tgcaaacact tctacaaggc gtggaatttt gcttaaacct actacttttt tattagggat
     5281 ataggctaca tgagcacgcc caaaaaaagg caaaagatga tgttcgcaaa gactgtaaaa
     5341 ttctatatca cgcactaaaa ccatttcatt attagaactt tcaaataaag cgtcatttaa
     5401 aatttctttg acattttgcg tataaccact agtaagaaat tcataagctt taaaaacacg
     5461 atttggcgtt ttaataagcc cttcacgatt tggattttct cctataattt caagcatggt
     5521 tttaacacaa tcttcaaatt ttttttgcac atttttctcc aaaaatattt tttatatttt
     5581 aataataatg taatattgca attttatcat aaattacttt aaaattttat gcaagtaata
     5641 aggaaaaatt tgctatcatt gaaggcaaat tttattttat aaggaaaaaa ctatggaagt
     5701 aaaggcaaag caactagatt ctgttaatgc gactgctagt gtaaaaattc cttcaggaat
     5761 gatcaaaagt gaagtagaaa atttagcaaa aaaagcttct aaaagtgtaa aaatggatgg
     5821 gtttagacca ggaaaagttc ctgtaagtgc cgtacttaaa agatatgaaa gagagctcac
     5881 tcaagatgca gaacaaaatc tttttaaatc cgctgtaaat agcgctttac aagaacttaa
     5941 aaaagaaaat aaagagcttg taggtgagcc atattttgaa aaatttgatc gtaaagatgg
     6001 agaaattatt gctgaattaa tactttcttt taaacctgaa atcaaacttg agggttatga
     6061 aaaactcatc cctgaatatc aaactccaaa agtaagtaaa aaagaaattg atgagaaaaa
     6121 agatgagctt ttaaagcgtt ttgctactcc tgaagctata aaaacaaaaa gagctttaaa
     6181 agaaggtgat tttgcaaaat ttgattttga aggttttgta gatgataaag cttttgaagg
     6241 tggtaaagct gaaaattatg ttttagaaat tggttctaag caatttattc caggttttga
     6301 agatggtatg gtgggaatga aaataggtga agaaaaagat atcaaagtaa ctttccctaa
     6361 agaatacggc gcagcgcatt tagcgggtaa agatgcagta tttaaagtaa aactacatga
     6421 aattcaagag cttaaaattc cagaacttga tgatgaaatg cttaaaaaac ttttaccagg
     6481 agaagaaaaa gctagtgttg aagttttaga tgaaaaatta aaagagcaaa tcaaaaatga
     6541 aaaacttttc aaacttgtaa atgatgaatt aaaaggcaaa tttgcagatg ctttgattga
     6601 aaaatataat tttgatttac ctaaaggcat agtagaacaa gaaactgata tgcagatgcg
     6661 tgcggctttt aatactttta gcgaaaaaga aattgaagag cttaaagcaa gtaaagaaaa
     6721 atatcaagaa aaacgtgatt cttttaaaga agaagcacaa aaaagtgtaa aacttacttt
     6781 tatcattgat gaacttgcaa aattgcgtaa gattgaagta aatgatcaag aattgattca
     6841 agcgatttat tttgaagcat atcgctatgg tatgaatcca aaagagcatt tagaaaacta
     6901 taaaaaacaa ggagctttgc ctgctgtgaa aatggcttta attgaagaaa aactttttaa
     6961 tgatattttt ataccaaaaa cagaaaaatc agaaaaagtg agcaaaaaag agaaagaaga
     7021 taaataatgt ttattcctta tgttattgaa aaatctagtc gtggtgaaag aagttatgac
     7081 atttattcac gccttttaaa agatagaatt attatgctaa gtggtgaaat tcatgatgaa
     7141 cttgccgctt ctatcgtagc acaacttctt tttttagaag ctgaagatcc tacaaaagat
     7201 atttatcttt atatcaattc tccaggtggt gtaattacaa gtggttttag tatttatgat
     7261 actatgaact atatcaaacc tgatgtttgt acgatttgta taggacaagc tgcttctatg
     7321 ggagcatttt tgcttagttg tggcgcagaa ggaaaacgtt ttgctttgcc taattcacgt
     7381 attatgattc atcaaccttt aggtggagct agaggtcaag ccacagatat tgaaattcaa
     7441 gccaaagaaa ttttaagact caaaactata cttaatgata ttttggcaaa aaatactaag
     7501 caaaaagttg caaaaatagc aaaagataca gaaagagatt ttttcatgtc agcacaagaa
     7561 gctaaagaat atgggctgat tgataaggtt ttggaaaaaa gttttaaatg atttctttgg
     7621 agatcattta aaacaaaggt tttttaatgg ttagaaaaat tatcacctat cccaatccta
     7681 gacttttttt aaactctgaa attgtaaata aatttgatac agaacttcac accttgcttg
     7741 atgatatgta tgaaactatg atagcaagta atggagtagg tttagcagct attcaagtgg
     7801 atattccttt gcgtgtttta cttgtaaata tttttgatga aaacgatgaa caaaaaaaag
     7861 aagatttgct agagattatc aatcctgaaa ttattccttt agatgaagaa atgattactt
     7921 gcacagaagg gtgtttgagt gtgccagatt tttttgaaga agtgaaacgc tataatcata
     7981 tcttgcttaa atatcaagat cgctttggag aatttaaaga acttgaagca aaaggttttt
     8041 tagctgtggc tattcaacac gaaaatgatc atttaaatgg acatttattt atagaaaaaa
     8101 tttcctttgc taagcgtcaa aaattcgata aagaatttaa gaaaaagaag aaaaatcata
     8161 aaaaagagaa atgaaaaaac taaagtgcat aagctttcat gaaggcttag acattataga
     8221 ggtagaatcc acttttacaa gaggtttgcc aaatttaagc atagtagggc ttgcaagtac
     8281 agcgattaag gaaagtgtcg aacgcatcaa agccacactt ttaagttgtg attttgcttt
     8341 tcctgctaaa aaaatcacta tcaatcttag tccttcaggc atcccaaaaa agggatcgca
     8401 ttttgatttg gctatcgctt tattaatcct tttgcaaaat gaagaattag atgacttttt
     8461 tgtagtagga gaattaggac ttgatggaag tattaaaagc acaaatgagc ttttttcttt
     8521 gcttttgttt ctctctgcta aaattaaaaa agctaagatc gttgttccaa aaagtatagc
     8581 acaaaaagct tccatgatac caaatttaga ggtttatgga cttgaaaatt taaatgaagc
     8641 aatagagttt tttaaagaaa aaaattatga aaattttcgc ttttctcaca atcatccttt
     8701 atttgcaaac cctttacaaa tagaaaatga aattttttta caaaatatgg attttaaact
     8761 tgattttaaa gatatcaaag ggcaggaaaa agccaaaaga gcttgtatga tagctgcttt
     8821 aggtatgcat aatatcttat ttgaaggaag tccaggaagt ggtaaaagca tgtgtgctaa
     8881 acgccttgtt tatatcatgc cccctcaaag tttaagtgaa attttaatgc aaaatgctta
     8941 tatgtcttta gattcaaaag attgtgaatt tactaaaatt cgtgcttttc gtcatcctca
     9001 tcatacttct acaagagcaa gtatttttgg cggaggaaca aaaaatgcca gaattggaga
     9061 agtagcactt gcaaatggtg gagtattgtt ttttgatgaa tttccacatt ttaacaagca
     9121 aatcatagag agtttaagag aacctttaga ggatcataaa attcatattt caagagtaaa
     9181 ttctaaaatc acttatgaaa caaaatttag ctttatagct gcccaaaatc cttgtccttg
     9241 tggaaattta ttctccaaaa atctttcttg tgtttgtagt gaaaatgaga ttaaaaaata
     9301 caaaaatcac atttcagctc ctattatgga taggattgat ctttatgtag ctatggatga
     9361 gatcagcaag gatgataaaa cgagtataag ttctaaagaa atgagtgaaa aaattttaca
     9421 agcttttatt tttagtaaaa aacgggggca aaaagaattt aatgggaaat taaaagatga
     9481 agatttaagt cgtttttgtg tattggaaaa agatgccaaa gatacgctag atttagcaat
     9541 ttcacgttat aatctttctt tgcgatcgct taataaaatt ttaaaagttt caagaagtat
     9601 agcggattta gaacaaagtc ttaatattag caaaacccat attttagaag ctttaagctt
     9661 tagagcaagg aattaaaatg gaaaataaaa gtatagctat ctttatagat gcagaaaata
     9721 tccctgcaaa atacgctaaa agtatttttg atatcgcttc agattacgga gaggttatca
     9781 ttaaacgcat ttatggggat tggactcaaa aaaatataca aggttggaga gagcaaattg
     9841 ctgaatattc tttaatcgct atgcaacaat ttaattttgc agccaacaaa aactcaagcg
     9901 atatgtattt aatcactgaa attatgtcca tattttatga aaaaaatata gatatttttg
     9961 ttattgtttc aagcgatagt gattatactt cactcattca aaaattaaga gaaaataaaa
    10021 aacaagttat aggaatgggg cttgaaaagt ctataaaatc ttatgtaaat gcctttagtg
    10081 aattttttta tttagataaa gatgagagta aaaaagaaga tattttaagt aaggattatt
    10141 taagagcttt aatcaatatc accgaacaac ttatcgatga aaaagggcgt gccgaatacg
    10201 cacaaatccg tactaatatg aaccgcaaat actcggattt tcatccgcaa aattatggtt
    10261 ttaagaattt tcgtgctttg atccagaaat ttttacccaa aatgaaaaaa tttgaagaag
    10321 aaagagaaaa aaatatatat tttttggtga aaaaagatta tgaaagctat tattgataat
    10381 ataaaaattt tagaacaaaa tgctataaat aaaggcttag atgagcttat tttaatggaa
    10441 aatgcgggat taaatttagc caagctaatt aaaaaagaag ctaaaaaaat tcgcattcaa
    10501 cgcaagatta gaaaagtaaa aatacttttt ttattaggcg ggggtaacaa cgcttcagat
    10561 ggcttggtgg ctttaagaaa tttaaaacac gctaaagctt ataaaatagg ctttaaagaa
    10621 aatacgcttt ttaaaaaaca agagcaaatt ttacaaaatt atgcttttaa attttgtaaa
    10681 aaagaaccca attttaaaaa atttcatatt atcattgatt gtattttagg tacaggttca
    10741 aatcgttgtt tagatgaaaa aacaagttta attattcaaa aagttaatca aagtaaggct
    10801 ttaaaaatag cttgtgatat acctacaaat ttgggatttt atccttgttt taaagctgat
    10861 attacatttt gtatgggagc tttaaaggaa attttacttg aagattttgc taaggaattt
    10921 gtaggaagga ttaaaatagc caatttaggc attagatcta agaaatttta ccctaattct
    10981 caagcttttt tgcttgaaaa aaaagattta aaaactatag atagaaaaat caacgccaat
    11041 aaaggaaatt ttggccatat ttatatagtt gccaatgcaa gtgctggaac tttagcagga
    11101 cttggagcct taaattttgg agcaggtctt gtttctttag tagcacaaaa aagtttctcg
    11161 cctcttttga tgttaaaaga aaaaattgaa aataatgcaa gtgctattgc tttaggtatg
    11221 gggcttgaaa atttggattt tctaaaagat gaaattttgc aaaacactcc tttgatcttg
    11281 gatgcaaact gctttttaag tgaagctttg ctttggtatt taaacagaaa agatgttgtt
    11341 ataacccctc atccaaaaga atttataaaa ctttataaaa tgtgctttga tgagaattta
    11401 gatatagaaa cattgcaaaa aaatcgcttt ttctatgcta gaaaattttc acaaaattat
    11461 gattgtgttc ttgttttaaa aggagcaaat cctattattg tgcaaaaaga aaaattattt
    11521 gttgtaaatt taggaaatca agccttagct aaaggtggga gtggagatgt tttaagtgga
    11581 atgattgctg cacatttagg ttttggtttt agcgctttag aagcagcaaa aaatgctact
    11641 ttagctcatg gacttgttgc aaaaaaatat aaatttaata aaaatagctt tgacgcttta
    11701 aaacttatca aaggattaaa atgcttgtaa aattagctgt actttttagt ggaaatggaa
    11761 gtaatttaga aaatatttta gaaaaacttc ataaaaaaac cataggggaa aatacctatg
    11821 aagtagtact ttgcatttgt aataaaaaag atgcttttgg tgtacaaaga gcaaaaaaat
    11881 ttggtcttga tactgtcatt gttgatcata aggcttataa tactcgtgaa gaatttgata
    11941 cgattttggt acaaaaaatc aaagaaagtg gagcaaatct tactgtatta gcaggtttta
    12001 tgagaatttt aagtcctgtt tttacaaaaa atattaaggc aattaacctt catccttctt
    12061 tattacccct ttttaaagga gcacatgcga ttaaagaaag ttatgaaagt gatatgaaag
    12121 tagctggtgt gagtgtgcat tgggtcagtg aagaacttga tggtggaatg attatagctc
    12181 aaaaagcttt tgaaaaaaga aatttgagtt ttgaagaatt tgaagaaaaa attcatagtc
    12241 tagaacatga aattttaccc ttaagtgtga ttgaaatttt ttcttaaaga attaaaggta
    12301 tttgctttaa aactataaaa tatcgcttta aaaaatttta aaattttcaa ggaaatttat
    12361 gtttgaatgg atatttagta ttgatgcttg gattacttta gctactttaa gtgctcttga
    12421 aattgtacta gggatagata atatcatttt tttagctatt ttagtaagca aactaccccc
    12481 tgaacatcgt gataaaggac gtatcttagg tttagctttt gcaatgatta caagaatttt
    12541 acttctttta tctctttttt gggtaatgaa acttgtaaca cctttgttta gtgtattggg
    12601 caatgaaatt tcaggaagag atctagttct tttactaggt gggcttttct tgattgtaaa
    12661 gtctattaaa gaaattaaag agcaaatttc tcatcaagaa gaaagtcaaa gtcattttaa
    12721 agcaagcaat aaactttgga tagttgtagc tgaaattgct gtgattgaca tagtgttttc
    12781 gcttgatagt gttattaccg cagtaggaat tgctcaagat gtaaccatca tgattatcgc
    12841 tgttattatc gcagtagctg tgatgctttt tgcttctaaa cctatagcag attttgttga
    12901 aaaatatcca agcattaaaa ttttagcctt agcttttttg gtgctaatag gcgtagtttt
    12961 agttgctgaa agttttgata ttcatattga taaggcatat atttataccg ctatggcttt
    13021 tgctttagtg gtgcaaattt taaatatttt agatcaaaga aaggaaaaaa atggctaaag
    13081 acgctaatgg aatagaactt aacacaggtg atagcgtgag tgtaataaaa gatcttaagg
    13141 ttaaaggtgc aagtacaact ttaaaacgtg gaactactat aaaaaatatt aagctcactt
    13201 ctaaagaagg tgaaattgag gctagagtag ataaatttgg cgttattgtt ttaaaaactg
    13261 aatttttaaa gaaaatctag gcaaagaatg tgcgaatctt acttgtttta agagggaatt
    13321 attacgcagg acaagaagaa tttatcaaaa ataataaact tcaaaattat acacttgatt
    13381 taaatgcttt gcgtctttta tcaggaagcg ttaaaaatat agtcagtgaa tataaaattt
    13441 taaatgttaa aaatgatgaa gatttgagta aaattttact caaacttcta gaaatgcgta
    13501 tgcaaaaagg tgagtttagc atcataaacg cttacaacga aacattaaaa atttataaag
    13561 acttagctaa acaatatcgc tataaaatat atgttattgt ttttgatagc tctttaaaac
    13621 aatgtcaaga aaaaaatctt ttagaagcta aaaaaaatgg atatatcatt ccttatgctc
    13681 ttttggaaaa aactcaagat ttgctcaaaa aaaatccaaa aaaataccca attttagact
    13741 caagagactg gaaaaaatgt ctttaccaaa tgccaaattt aagcaaatac aaaaaaattc
    13801 atcatatagg agatttacaa ggttgctata gtgttttaaa agaatacatt aaaacaatca
    13861 aagaagatga attttatata tttttgggag attatatcaa cagaggtata gaaaatggca
    13921 aagtaataaa atttctttta aaaatttgcg aaaaagaaaa cgtatgctta ttagaaggaa
    13981 atcacgaaag acatcttata aaatgggcta atggagaatt gtcaaattcc aaagaattta
    14041 atgaaaatac tttaaaggat tttagaaaag aaaaacttac tccaagagat gctagaaaac
    14101 tctatcctca tctaaaagaa tgtttatact acaaattcca aaataaattc atattttgtt
    14161 cacatggagg agtaaatttt ataccctcca aacctgaaaa aataagtttt ataccaagcc
    14221 atgactttat ttatggtgta ggtggatatg aagacagtca aaaagtagca aatcaatttt
    14281 gtaatttcac ctcggacaat ctttatcaaa tctttggaca cagaaataaa gaaaaacttc
    14341 ctatgaaaat agccaaaaga gtatttttat gcgagggtaa aatagatgat ggtggatatt
    14401 tacgcgtagt tacactagat gaaaaaggtt ttgagtgtat agaaattaaa aaccaaattt
    14461 acaaaaagaa ataagcctaa agaggcttat tcttcatctt tatttgtttt tttaaccacc
    14521 ttaacacgct ctatagaatt cccatccatt tttttaactt catagtaaca aagttcatct
    14581 tcaatgcgat ctcctaccat aggcaagcgt cctaaaagat taaatacata accacctata
    14641 gtaacttgtt ctaaatcctc atcatagttt attacaagca tttcttcaac agtttctata
    14701 tcgcatcgtc cttgaaattc atagatattt tcagcaagtt ttttatagct gtcttcttca
    14761 tgctcgcttt taatttcgcc aataatttct tccatgatat cttccatggt taaaattcca
    14821 gcagttccac catactcatc aactactaat gcagtatgag agcgttcttt attcatcatt
    14881 acaagtactt ttgaaatgct gatattttca ggaaccaaaa tcaaaggttt aacaaaagta
    14941 tctaaatttt gacttttatg gtttaattca ttttgtatta tatctcgtat gtgtatcata
    15001 cctaaaatag tatctttaga gccatcaata taaggaaagc gagtatgttt atgctcacaa
    15061 atgatttgca tattttcttc gtaacttttt tgtttattta gacaaatcat atcttttcta
    15121 ggagtcataa tctctttagc aacagtatct gaaaaatcaa cagcattgcg tatgatctct
    15181 gtttcaaatt catctaaaac tccacctttt tgactctcac ttgctatgat tttaatttct
    15241 tcttcgctat gagttagctc gctttcttta gcaggtttta ttccaaaaag tttcaaactt
    15301 atagctgcta aaaaatcgaa aattttaata caaggcaaaa agagcatcca aaaccaatga
    15361 agcggtctag ctataaataa aaccgcttta tctgcaactg caatagctat actttttggc
    15421 acaagttctc ctaaaaccac atgtaaaaga gtaataatgc taaaagcaat aatgaaagcc
    15481 atagtatgga taataacagt gctaaaacca agattaataa gcggaatttc tagcattttt
    15541 gcaatagcag gctcacctat ccaaccaaga gctagagaac ttaaagtgat tcctaattga
    15601 caagcactaa gataagtatc aagtcttgaa gtaacctcca aagctttctt ggcaccagct
    15661 tttttttctt ttaccatctc ttcaagcttg gaacgacgta ctttaacaat actaaattca
    15721 gacaaaacaa aaaaaccatt taaaaacact agagcaagtg caacaacaac cataagtata
    15781 gaatatcctg catcaaaaga tgctgtagaa gtttggttta aatccaaaac ctgactgggg
    15841 tccaatgaag ctccttaaga aataaaatat tattaaacct tattatacac aattaaaagt
    15901 aaatttaata tttgaatttt ttcttgtatt ttataagaaa aaactaagac ttataagaaa
    15961 tatttttctc aaattctttt aaacgcttat atatacttct aagttgagtg atagttgtcc
    16021 agtttgtgat aaaaatacta aaagagcttc gcacttgatc aaatgcatta ttaatctgca
    16081 ttacaatacc aagtcctata gctccagcaa aaagccctgg tgccatgatt aaaaatggca
    16141 ctataactat catttgctca aataaaatga gccaaatatt aaaatatcca taatgtaaaa
    16201 aaagtctttt atagttaaat ttaagccctg taaaaagctc tatcatagtc tcatttttag
    16261 cgtattcttt gcgattatcc tcagcataaa caagctcttt tctaaaagct gcttcagctt
    16321 tttgattgtt atattcaagt ccaggaagct taatacctac aaaccatgac acaaccaagc
    16381 ctcctaaaga aatcaaaagt gcaatataaa caagcaaacc atcaatgttt tttaaaaaat
    16441 aaaaaaaaga attttcgctt aaatttgcaa ataaagcttt actcacaaca tcacttaaac
    16501 tccataaaat cggaataaat gctacaaggg tcatcaaagc ttttataaaa ctaagtccta
    16561 aactctctac gattttagaa aaattataag tatcttcttg aattctttgc gaacttcctt
    16621 ctatattatc atctttattt ttccaaaatt ttaaataaga aaaagtcata gcctcacgcc
    16681 acttaaaagc atagacgcta gcaaaataga tattaattgt agcgattaaa acataaggaa
    16741 tagcaatagc caaaaaaact aaaatcaaag cataaaaatc acttgctgaa taatttggct
    16801 tttcaatcat agccctagag ttgaaaaaat attctaataa attttgataa taatacaatg
    16861 cgcctttatt gataaaatta gctttttgga aattttgctc agctctttga ttagcctctt
    16921 ggattaaagt ggcattattt tcaagatttt cttctatttt ttgcgtagaa ttagaatcca
    16981 aaagttctat ttttggcttt tgtaaaacat tgtaaaaatc actataccat gaattgatcg
    17041 caacatttaa gcttgtttgt atatataaga aaaataacag taaaaaaagt cccaaataag
    17101 cccataaagc ccatttttta cttttaaaaa acgaagagaa cataatcatc acctttaaaa
    17161 taaaaattct aataaacttt ttttaatgaa aagtttattt tttacctaaa tagtctttaa
    17221 tattgtaatc aataggcata acaaaactga ttttatcacc attttttaac atttctttag
    17281 gcggttttgg caatggagaa gctcttttaa ataaacttaa agcttcatca ttgagcgctg
    17341 cataagggca agatttttta agctctttgc ttaagacatt tccgctttca tcaatgctta
    17401 cgcgaattct tacaacgcct tcttgttttt gcattatcgc ttcttgagga tattttttaa
    17461 atttagtcaa atgagccata agcaaagctt gatagctttt aacttgttct ttggcattgc
    17521 cacttactat agtttgtgtt ttatctttat tactttgtag cggagcactg agcgattcat
    17581 ttttaaattt tgaattttca cttgcattag ctatttcttt ttgagcttgg ttttcatctt
    17641 gcttttcaat ctttttttga acttttaata cagcattttt atcttgagaa ttaaaactta
    17701 ttctttcgtc ttgttttttg tttttatctt gagaattact ctttttttga tcaatcgaaa
    17761 cttcttttaa ttccccgata ggaaactctg ataccatcat aatggaagta aattccgctc
    17821 cttgtttaaa atcaacacca cttgattttt cttgagtata aaaagaaaaa aggaaaaaca
    17881 ttaatactaa agtatgcaat atcaaactta acacaaaccc aaaaatcaca ctagacttca
    17941 tactaatcca tctttttact tgaaagagct atttttccat agccattctc ttttaatttt
    18001 tgcattactt gcataatatc ttcatacttt acacttttat cgatatgaaa ataaataatt
    18061 tcttctttat tgcctttggt ttttatatct aaagcacttg aaagattttc taggcttaat
    18121 ttatcatcat taatagccaa agtattatca gtatttaaat aaagtatgat gggattttta
    18181 agcttatcct ctgcttgctg cgaactcttg ggtaattcta ttttgataga acttgtgata
    18241 agaggagtaa cagccataaa aacaatcaat aatacaagca taatatctat aaaaggagtt
    18301 atattgatct cacttaactc ctcttctttg tgagccattt cagtttttat cattaaaata
    18361 actcctatga aaaagtatat agacaaaatt tgcaagctca tctaaatggt gcataagttt
    18421 taaatttttt cttgtaagat aattataaaa aagcaccgca gggatagcag ctatcaagcc
    18481 aaaagctgta gcaaacaagg cttcagctat accaggcgca acgactgcca aagaagcatt
    18541 gccaagattt gctataccta taaatgcatt cataattccc caaactgttc caaaaagccc
    18601 tataaaaggt gcgctagcac ctatgctcgc aagcaaactc aagccatttt tgcttgctgt
    18661 gatttgcttt gagatggtat tttgcaaacg caattctata cgctctttta tgtgatcatt
    18721 tttatattca cttttttcaa gctcatcttg aatttctaaa gataaaacac ctgcaaaatc
    18781 ttttgtctga tctaattcat tgagattttt taattctttt atcttttgta tagacaagtc
    18841 tagatttttt ttcataaaat aaaattgcat aagcttagaa ataaaaactg cccatgctaa
    18901 aatggaaaat aaaaccaata tataaataac accttttacc acctcatcag cattttgata
    18961 aagactagaa agagaaagct ctattttagg tgcttcggtt tctatcttag aagaatcaaa
    19021 agataaattt gtatctgttg catttgcttc tgcatttaaa tttaacaata aaaaaacaaa
    19081 ataaaaacat ttttttaaca tttgtatatt ccttaatatt tatattcaaa acttactata
    19141 aaagtacgac cgcgagcaga attgctaaaa agatagatag gatcacctgc tccattatat
    19201 tgaagctgat tatctaagga attataagca tttaaggcat ccatgtagtt tttatcaaat
    19261 aaattttgca cctctgctct cattgtgagg tttttaaacc attctatatt ccaatataaa
    19321 tctactataa taggaatttt tggtaagtct tgtgtggttg gtttaggata ataaggattg
    19381 tttggatcct tattccaatc atctgtattt ggatttaccc tttttgcttt gcctgtgtat
    19441 tttgctatac caccaaagct tattttatca tttaacctaa agccaagctc tacatttgca
    19501 taatcttttg gaagctccat gattttactt gccgaaaaag agccaagaag aggtcctgaa
    19561 gtttgagaaa tagtcgaact tgtatcttgt cttgaataca tagctttagc ataagcaaaa
    19621 cccaagtcat agcttaattc taactccaca cccttaaata tggtatcatc agctgaattt
    19681 aagtgcatat aaaattgcga gcttggagga tctttacttg gatcttcaag ataaaattgt
    19741 tcattataaa tataatcttt tatttttgta tgataataca cggctttaaa accaaagcga
    19801 tcatcatctt ttaaaagtcc atgtttaaaa gaattaaaac ctatttgcca agtattggct
    19861 tgttctggtt ttaagaaaga attgatacca ttgccttcgt tatttgagaa aaacatttct
    19921 tgcacattag gggctctatt tgttctcgca aaacttacaa agggtgtaat aagctcgtgt
    19981 atggcagctg aaagcatgac agaagcattc aggcgaagtc catttttatc tatatctgtc
    20041 gccgcttttg gaaaacacat aaaatttact tcatcgcaag caggtctgtg tcctttgata
    20101 ttccaatcta aaagattcac attggtatca agtgtaaaga taccataatt tagactatta
    20161 tcaagataat aagtaaaaag attttgtttt ccacgaggct gaaaaggtat agaatttact
    20221 ccttgaattg atgtatttaa ggtattttta taatcattaa gcaaaatatt tgctccaaag
    20281 cgtatgttta gattaaatct atgccattca ccctctaaag tatcacttat atcaaaagta
    20341 gtggcagtat tttttgcctt tgtgttagct atggcatcgt ttgccgcaaa agtagatttt
    20401 gatccatagg tttgtatgcc ttgattgtag gcaataagcg tatttacatt aagccactca
    20461 ttagggttgt gccaaaaatc aagttgataa ttgtcattgt gtatttttct accggcaagt
    20521 tcgttttgat atctacgata agaaaatata gtgtttgtaa aagaatttgg gacatattcg
    20581 agtttaaaaa gttgagagtt tggtttttgg gttaaaaaat ctggatcaaa aggagcgata
    20641 ttggtatcag ctataccatc tccatcagta tcaaccatac tactacctat cttgccaccc
    20701 ccgcctacag tgtaattttg agtaattctc tttgcgctat aaccaaaaag cgcgcccaca
    20761 tatccattat tttcaagttc agtctttcca gccactgcac tcatataact tggtccgatt
    20821 ccattgcttc cataagaaaa tcgtcctaaa aatccaaaga tattgccatc atgtacaata
    20881 tcatttatac ctatggtctt aaaatttgct gatcccatca aggcatttgc tccacctact
    20941 ccttcaaaag ttccccttgt aacatcaact ccgattaaga aatttgtatc aataacagct
    21001 ccaaaagctg aagttcccgt ttgtgaatga aatctagctg gatcatctga tgcactacca
    21061 taaaaagttt gagtaacacc gtcaatcatg gtattaacac gcccaaaacc actcatacca
    21121 cgaatattta cttgaactgt gccttgagct tgatctgtgt ttgtgtaggt tccaggtata
    21181 ctacgcacta tagaatctat actttgtgta tctgaaccta taccctctct tgtgcttgtt
    21241 gccccaggag ttacaaaagg tttttcatcg tttttgattt ttgaacctga aatttcaaga
    21301 ctatcaaatt ctaattcttc agaaaaagca aaactagcaa aacataaacc tacagcacaa
    21361 aataaactta attttttcat tcctccccct tataaatcaa aacataatca ctgtctttta
    21421 aatctatttc tccatagctt aaattcacta caactatttt tttactgctt ttaaaatctt
    21481 gtatatgtaa aggaattcct atttttttac ttgtatgata gcttccagct agcaataaaa
    21541 ctttatttac atgatgaacc aatacatcag ccatacgcct gtctttgaat tgttgaattt
    21601 ccaccaattt atctagtaat tctttatttt cttcaggatt tagcttatgg cttaaggata
    21661 taatgtcaaa aagttgtttt tttacttcat ttgtggttga aacataaccc tttaagggct
    21721 gagccccatt ataaatgctt gtaatttctg agcgtgaaag atttgcacct aatatttttg
    21781 actttgaata aaaaaccaca ttgacaaatt gctcataatc tttccatttc cagaccttat
    21841 cccaatttaa tgcattagta agttcattgg ctttaatggt ttttttattt ttaaaagctt
    21901 tatctaagtg attttgctct gtgcttgcta acatttctaa agctacatca aagtttatat
    21961 tttgagaact taaatttcct tctaaggcat taaaaatcat aacttgactt atcttatgtt
    22021 taacctcatc gtgtttttcg ccaagcagta tcacatctgc ttttagcaat tctaaaatca
    22081 tatcttcaaa agaaatcttt ttttgagtat gcgtatcaag tatataaaaa tctttatttt
    22141 cttgaagtgg agatgatttt tgcaaaacag cacaagcgct caacataaag cttataaata
    22201 gaatgcttaa aatagtataa aatttcatta ttattgtta
//
LOCUS       DAPIWQ010000011        21036 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.011, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000011 DAPIWQ010000000
VERSION     DAPIWQ010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21036
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.011"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..1398
                     /gene="murJ"
                     /locus_tag="RJ267_000305"
     CDS             <1..1398
                     /gene="murJ"
                     /locus_tag="RJ267_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HDV7388190.1"
                     /translation="SRILGLARDVLIALFLGAGLYSDIFFVALKMPAFFRRIFAEGAF
                     GQSFLPNFVKAKKKGAFCVSVMMQFSLIVFLFCLLVSFFSSFFTKLFAFGFNADTIAL
                     AAPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAALFNLSIVIAAFFVDKNAPQ
                     NTLYYFSYATVLSGVAQLILHLLVLKNNPVIRAMTLSIKFKKTKAKLQGFYGNFFHGV
                     LGSSATQFSSLLDTTIASFLMSGSISYLYYANRVFQLPLALFAIALTQVSFPKILKHL
                     KSDQENLALKFMQRALALLSILLIASSIVGSVFALEISKLLFERGNFTHEDSVITAYV
                     LIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAWIAVKSLIISALCSMAFIFLIKDESLK
                     VIAVALSSSISAFYLLGANIKEFGFKKFFALISIKICLLVIVALIVFTILLILIKPYI
                     LSFFIGIFTSFKGVF"
     gene            1398..2786
                     /locus_tag="RJ267_000306"
     CDS             1398..2786
                     /locus_tag="RJ267_000306"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HDV7388191.1"
                     /translation="MRLLDSVTKEKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLAQGNRVKFARNYTDIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVL
                     DPDFKPRATHYITAMLDLIKKLAKDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENIS
                     RLSNEVQKRNESDFVLWKFDENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGI
                     DLLFPHHENEAAQCRCGCKRKLANIWLHNGFVKIDGEKMSKSLNNSFFIKDALKEFMG
                     EALRFYLLSSHYRSHFNYSLSDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIGIKS
                     EIAKQILEILNDDLNVSKALALLDDFISSANLELDKESKNKILKQNIKEALSELAKIF
                     GFGFMDATLYFQWGVSKEEREEIEKLILERTEAKKNKDFNTADAIREQLNSKKITLLD
                     TPNGTIWEKINA"
     gene            2779..4521
                     /locus_tag="RJ267_000307"
     CDS             2779..4521
                     /locus_tag="RJ267_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7388192.1"
                     /translation="MHNEMNLKEVLIRFKPFYKRYWKQFAIAIFGMILASGGTAGSFY
                     ALEPILNYIFVEKNEALLYTVPFLLVLMYFFKNLGTYLQSFYVSFIGTDMLRVLRARV
                     LKNVLRLDMDFFKRYRSGELVSRCTNDINALQSIVSNIIPDFFRELLTAIGLLAVVLY
                     QSPTLAFFALVILPLAIFPLVWFAKKLKKYARNIQETNSDLLSYLGEIFSNIELIKAN
                     DNEKKESDKFAKHNDTLCKLNLKSARIDALTSPLMDMMGSVGVAVVIIVGGREVINGS
                     MSVGSFISFVSALFAIYTPLKRLSSLYGKLQGAVAASERTFYLLDLEPQIKGGSKELK
                     NIEKISFENVEFAYENPHKSVLKGVNFDFVKGQMLALVGTSGGGKSSIINLLMYFYEK
                     QKGKILLNQEDISTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVIQALK
                     LANAYEFVKEMGGIWAEVKEHGKNLSGGQKQRIAIARALYKNPDVLIFDEATSALDNE
                     SEKAIVKTIENLKQDRLILVVAHRLSTIENADKIVVLDKGKVLAIGKDEELLQTCSLY
                     QKFKSKEKTKPSFS"
     gene            4553..5611
                     /locus_tag="RJ267_000308"
     CDS             4553..5611
                     /locus_tag="RJ267_000308"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HDV7388193.1"
                     /translation="MAYEMIKLLLFKLNPEHAHALVEYSLRALSASFPGALSFLAHKY
                     IVDDESLRQNLLGLDFNNPVGLAGGFDKNATMIRPLSALGFGFLEVGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNEGAEKIALRLAKTYPFVLPLGVNIGKNKITPNDKALE
                     DYFTLFRDFKDLCDYFIVNISSPNTKNLRELQNDDFLNTLLEEAKKITSKPILIKIAP
                     DMKIDDALNLCENAIKKGADGFILANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     VTKILFGKTLLIASGGIDSADIAYERIKNGANLVQVYTALIFKGPSLVKNINQNLIEL
                     LRKDGFLHISEAVGVNLK"
     gene            5608..6858
                     /locus_tag="RJ267_000309"
     CDS             5608..6858
                     /locus_tag="RJ267_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HDV7388194.1"
                     /translation="MIAYEKIQLKNKLEVYALPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCAKKNLDKAL
                     ELFAELMANLNLKDEEFQPERAVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSIYYQPKNAILLVSGDIESKEVFELSKKHFEKIKNTKTI
                     PKIHTKEPKQDGVKRIYLHKNSDTELLALAYKIPNFKHKDIPALNALSELLGSGKSSL
                     MSEILIDKLNLINDYYAYVNDCIDENLFIFICNCNPNVNAEKVEKELLKIIDKLKMGK
                     ISQKDLQRVKNNVKSDFIFSLNNASAVANIYGSYLARGDINPLLNYEKDIQNLELKDL
                     ISCAKKYFIQENSTTVILRKDSNG"
     gene            6851..7747
                     /locus_tag="RJ267_000310"
     CDS             6851..7747
                     /locus_tag="RJ267_000310"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HDV7388195.1"
                     /translation="MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     SALTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYLAGLIESLEFRLPLC
                     SPSKENFAKIEEVMKKYKIKGF"
     gene            7747..8526
                     /locus_tag="RJ267_000311"
     CDS             7747..8526
                     /locus_tag="RJ267_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HDV7388196.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGANIAFTYNSNAQI
                     ADEMVQDLEKNYKIKARAYEFNILEPETYKELFEKIDVDFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNVVSGGPIETDALRAFTNYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSSKASWVTGHTFIVDGGTTFK"
     gene            complement(8567..8872)
                     /locus_tag="RJ267_000312"
     CDS             complement(8567..8872)
                     /locus_tag="RJ267_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388197.1"
                     /translation="MELDQILLYAFIFLNLFALFGLFLGNKKKNQFNDKKFYKICPCK
                     KMAENGSLSTICIYSAVGGFFYSVLSIGFIGFGNWTLNFIFLLALLSVFLGWKLKLD"
     gene            complement(8884..9480)
                     /locus_tag="RJ267_000313"
     CDS             complement(8884..9480)
                     /locus_tag="RJ267_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDV7388198.1"
                     /translation="MQIIKQACGVYETNCYILFTPKGEFIIDPGTDALLFIKKHVKKP
                     LAILNTHGHYDHIWDNAKVKKEYNIPIYIHKNDAFMLHDDFNQGYDSSDADFLVDNED
                     ILNICGVDFKFHFLPGHTPGCTMIEIVGKNIMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFKLLPGHGQETTLKEEQVHLPSWLRYF"
     gene            9554..10294
                     /locus_tag="RJ267_000314"
     CDS             9554..10294
                     /locus_tag="RJ267_000314"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HDV7388199.1"
                     /translation="MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCK
                     RALKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLV
                     SLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKS
                     EIYALAKYLNLHENFIKKAPSADLWENQSDEADLGFSYTKIDEGLKALETNDEKLLRT
                     LDPSLIAMLKNRMQKNAFKGKMPEILEI"
     gene            10298..11224
                     /locus_tag="RJ267_000315"
     CDS             10298..11224
                     /locus_tag="RJ267_000315"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HDV7388200.1"
                     /translation="MNEEKNYELWLDNYFFKPNFWQKCLAFILLPLSVLYAFFAILNT
                     FFRKKIVFKKPVISVGNLSFGGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKN
                     QNEILCTLTQSGDEAMEYAFEENIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFH
                     IKKFDILLESKIKPYFNFTLPSGAYRLPKFYEKRADFIALEGRDFVRYSFVKENPKAV
                     LVTAIAKPFRLYEHFIKARACYFFKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVK
                     DFGFKCQIIELNIELKDSLREKIKTYIKEFEQ"
     gene            11221..12633
                     /locus_tag="RJ267_000316"
     CDS             11221..12633
                     /locus_tag="RJ267_000316"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HDV7388201.1"
                     /translation="MKLVESRNVNNVSSFKEALINPNAPEGGLYSPLNLPIFEGEKYA
                     NLSYKDFALKLIESFGFGEEELFKKALKSYESFDDKNTPISLQKISEKTYINELWHGP
                     TRAFKDMALQPFGVLLSEFSKDKNILIICATSGDTGPATLKSFENAKNVKVACMYPKG
                     GTSGVQELQMRALDKDNLKVFAIDEDFDAAQRTLKELLFSKDFQNEIKALNYELCAAN
                     SVNFGRILFQIIYHYYASLKLFNEFLEEVQIIVPSGNFGNALGAFYAKKMGAKISKIK
                     IASNANNILSEFFNQGVYDLREKSLKKTISPAMDILISSNIERLLFAKFKDKRTKELM
                     NLLKNERYFKLEKEELQSLQEDFEADFCTDEECMQFIKQSKILIDPHTATCFKMLDPL
                     KPSIITSTAEWTKFTPSMIKALYDRDSKNEKEDLKFIAKEFNVQVKDEILALFDLKNS
                     DEKVFEARNIKKEILDWMQK"
     gene            12630..13349
                     /gene="kdsB"
                     /locus_tag="RJ267_000317"
     CDS             12630..13349
                     /gene="kdsB"
                     /locus_tag="RJ267_000317"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HDV7388202.1"
                     /translation="MIIIPARLKSSRFHEKILCDIGGVPMFVATARRVSSVDEVCIAL
                     DDEKVLSIAKEYGLNAVLTSKDHESGTDRINEACKKLALKDDEIIINVQADEPFIECE
                     NLLKFKEFASFCLDKKAFMASCYKKITQEEAMDPNLVKVLCDKEGYALYFSRAKIPYE
                     RENYEESFKGHLGIYAYSVKALREFCSLSSSALERAEKLEQLRAIENGKKIKMLEIST
                     TSMGIDTKEDYERALKIYLEK"
     gene            13454..14209
                     /locus_tag="RJ267_000318"
     CDS             13454..14209
                     /locus_tag="RJ267_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlgG"
                     /protein_id="HDV7388203.1"
                     /translation="MITQTMQSKESKESKENSKISFANAFLKQNASKLNEIQNANSQT
                     LARSEALNSTNTTNTSNNTNFSISSKTSSPNYDISSEFKNSIYTLKYKQVDISNTSTN
                     TAYGYSVDKDGYMGSDFNKAAGLPEDFKIHKSTLDEIKKAAENDPVVSSTKEYLGVSS
                     YYSNIDIANTIKQYYNLFSNALGQSFSNDKTSFSEADINSMPSGYGVSGTQWMDFNEP
                     SNRMNITGLKDFSNSLISNVYKTPEQAKEADEI"
     gene            14225..14749
                     /locus_tag="RJ267_000319"
     CDS             14225..14749
                     /locus_tag="RJ267_000319"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388204.1"
                     /translation="MIKGLSSETLGLSLEEIKNVSRGEDWQFNPDMSVYPQNEDGSYS
                     KETLFMSFLKAQGGQPVESLKTTLNPKLEAYKRAMAKESFSGPAINIDSIMTGKSDFK
                     SFFRYWAERGIEGDLYMYENNISKESAMGNWALDAEIKQALANGWKAKPSTIDSYADS
                     IMDRLNNLLGQTRV"
     gene            14844..15614
                     /locus_tag="RJ267_000320"
     CDS             14844..15614
                     /locus_tag="RJ267_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HDV7388205.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDKRKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNATINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDTTRAILAPFQENPEFWGIAVRKGDEALKDK
                     LDNFIDESRKNGFLDFLGNKYLKDIKEVFKQNNITFFL"
     gene            15707..15934
                     /locus_tag="RJ267_000321"
     CDS             15707..15934
                     /locus_tag="RJ267_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7388206.1"
                     /translation="MKKVAFFLLFLFLSCTVLNAAREYCKYAYQEDRAIPLILNYGIR
                     LGVVGAGVANAPAPGGSTYNSKIDMMAARCH"
     gene            15960..16184
                     /locus_tag="RJ267_000322"
     CDS             15960..16184
                     /locus_tag="RJ267_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388207.1"
                     /translation="MLEFIFTLILDFTFYSIKTLEKVFLGRTALVILFVVFIALFCVK
                     GLFLYILLALELFLLLYLFLGILFLRFYKS"
     gene            complement(16181..16915)
                     /gene="fliP"
                     /locus_tag="RJ267_000323"
     CDS             complement(16181..16915)
                     /gene="fliP"
                     /locus_tag="RJ267_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HDV7388208.1"
                     /translation="MKKILLFLLLSMSLFAAEATIPTVNLSLSAPNTPNQLVTTLNIV
                     IVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
     gene            17058..18347
                     /gene="glmU"
                     /locus_tag="RJ267_000324"
     CDS             17058..18347
                     /gene="glmU"
                     /locus_tag="RJ267_000324"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HDV7388209.1"
                     /translation="MKTSILILAAGLGTRIKSQKPKVLQELCQKSMILHILKKAFALS
                     DDVSVVLSHQKERVEKEILEYFPKTQILEQDLQNYPGTAGALSGFEPKNERVLILCGD
                     MPLVEQTSLEALLGNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQKKIKKYWMQQGVIFHLPQSTFIGADVEFVGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSINVEKGALFINRAGHKMIKDYYYKKFQK"
     gene            18344..19498
                     /gene="coaBC"
                     /locus_tag="RJ267_000325"
     CDS             18344..19498
                     /gene="coaBC"
                     /locus_tag="RJ267_000325"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HDV7388210.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEGFRVKVLLSNGLLKFAS
                     KMSFEALVDEVLCEENESWQNSNNHIAFSKDVDLVLFAPASVNSINKLAFGIADNLFI
                     QTLIAANKSLIIAPAANTNMFHHFSTQNSLKMLKENKALIIEPICKVLACKDEGVGAL
                     AEVKNIFNIVKRELLKEKFWCDKSVVITGGSTKEKIDDVRCVSNFSSGKMAKAIADAF
                     YFLGARVKLLSSVEFDTPYELCKFESSKDLKELLDKNLNHDFLIMTAAVSDFIPQSVK
                     GKIKKNEHLQGLNLHLSLNEDLLKTCKFQGKKIGFKMEFDSQNALENAKKSLKDKQLD
                     MVCLNIIDQKNYFGSDQNELYFITLNNENKSTLQSKEKLAFELVKWCEKL"
     gene            19495..20112
                     /locus_tag="RJ267_000326"
     CDS             19495..20112
                     /locus_tag="RJ267_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388211.1"
                     /translation="MSMINSTLPIQMKVLAKSGYGHYTLLLNHKKIQTKSMIELEIGA
                     EYLAELYMQNGGVIQFKHLSKRPNFKPFEEGLALIIAILEDKISYKKFIIQNLLDCKD
                     IERYQILKEMLFASFENIYHIPFNFENKSCLFQMRKRAKYLEIYLYFSVFGALKILID
                     SQGISVFTPFAKVQKFLNEHLDFNVSQENKIEPLFVFKRLFDFKG"
     gene            20116..20784
                     /gene="uppS"
                     /locus_tag="RJ267_000327"
     CDS             20116..20784
                     /gene="uppS"
                     /locus_tag="RJ267_000327"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HDV7388212.1"
                     /translation="MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCM
                     EENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRL
                     EDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKKLELNEENLTQNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRER
                     TFGK"
     gene            20781..>21036
                     /locus_tag="RJ267_000328"
     CDS             20781..>21036
                     /locus_tag="RJ267_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDV7388213.1"
                     /translation="MIFFIIILGACLGSFCTSLASRIIEKKLFFISRSFCFSCDTKLK
                     YYEIIPIFSYIFLKAKCQTCKCHLSISLLINEILGAILLIL"
BASE COUNT         7484 a         2492 c         3862 g         7198 t
ORIGIN      
        1 tcaagaattt tagggcttgc tagagatgtt ttaatagcgc tttttttagg agcagggctt
       61 tatagtgata ttttttttgt ggctttaaaa atgcctgctt tttttagaag aatttttgca
      121 gaaggggctt ttggacaaag ttttttgcct aattttgtaa aagcgaaaaa aaagggagct
      181 ttttgcgtta gtgtaatgat gcaatttagc cttatagttt ttttattttg tcttttggta
      241 agtttttttt cctctttttt tactaagctt tttgcttttg ggtttaacgc agatactata
      301 gctttagcgg ctcctttggt ggcgattaat ttttggtatt tgttttttat ttttttagtt
      361 acttttttag gagctatttt aaattataga caaaaatttt tcattacctc tttttctgcg
      421 gcattattta acttaagtat tgttatagct gccttttttg tggataaaaa tgcaccgcaa
      481 aatacacttt attatttttc ttatgcaacg gttttaagtg gggtggcaca gcttatttta
      541 catttgcttg ttttaaaaaa caatcctgta atacgtgcta tgactttaag tataaaattt
      601 aaaaaaacca aggcgaaatt acaaggtttt tatggcaatt tttttcatgg agttttaggt
      661 tcttctgcga ctcaatttag ctcattgctt gatacaacta tagctagttt tttaatgagc
      721 gggagtattt cttatcttta ttatgcaaat cgtgtcttcc aactccccct ggcacttttt
      781 gctattgctt taactcaagt ttcttttcca aaaattttaa aacatttaaa aagtgatcaa
      841 gaaaatttag ccttaaaatt tatgcaaaga gcattagcgc ttttaagcat tttgcttatt
      901 gcttctagta ttgtaggttc tgtgtttgct ttggaaattt caaagctttt atttgaaaga
      961 ggaaatttca ctcacgaaga tagtgtgatt acggcttatg ttttgattgc ttatcttata
     1021 gggcttttac cttttggttt gcaaaagctt ttttctttgt ggctttatgc aaaatttaaa
     1081 caaaaaacag cagcttggat cgcggtaaaa tctttaatta tcagtgcttt atgttctatg
     1141 gcttttatat ttttgattaa agatgaaagt ttaaaggtta ttgcagtagc actttcaagc
     1201 tctattagtg ctttttattt gcttggagct aatatcaaag aatttggttt taagaaattt
     1261 tttgctttaa tatctattaa aatttgctta ttggttatag ttgctttgat tgtttttacg
     1321 atcttactta ttttgattaa accttatatt ttaagttttt ttataggaat ttttacaagt
     1381 tttaaaggag ttttttaatg agattattag atagtgtaac aaaagagaaa ataaaacttg
     1441 ataaaaaaga tattagtatt tatttatgcg gacctacggt ttatgatgat gcacatttag
     1501 gacatgcaag aagtagtgtt tgttttgatc ttttgcgtag ggttttactt gctcaaggca
     1561 atagggtaaa atttgctaga aattatacag atattgatga taagattttg aaaaaaatgg
     1621 ctcaaagtgg tcaaacttta gaggaaatta cggaatttta tatcaaaagt tatgaagagg
     1681 atatgagggt tttaaatgta ttagatcctg attttaaacc tcgtgcaacg cattatataa
     1741 cagctatgct tgatttgatt aaaaagcttg ctaaggatgg gtttgtttat actctagaag
     1801 atggaattta ttttgataca agtaaagatg aaaaatattt aagcctatca aatcgcaatt
     1861 tagaagaaaa tatctctcgt ctaagtaatg aagtgcaaaa aagaaatgaa agcgattttg
     1921 tgctttggaa atttgatgaa aatttttacg aaagtgaatt tggcaaaggg cgtccaggtt
     1981 ggcatactga atgtgttgct atgattgatt ctatttttga aaataccctt gatatacatg
     2041 ctggagggat agatttgctt tttcctcatc atgaaaatga agctgcgcaa tgtcgttgtg
     2101 gatgtaagag aaaattagca aatatttggc ttcacaatgg ttttgtaaaa atcgatggcg
     2161 aaaaaatgag taaaagttta aataatagtt tttttataaa agatgcttta aaagaattta
     2221 tgggcgaggc tttaagattt tatcttttga gttctcatta tagatctcat tttaattatt
     2281 ctttatcgga tttagaaaat gctaaaaaac gtttagataa attttatcgc cttaaaaaaa
     2341 gattggattt aggtgaaatt tctgattttg atgttttaaa tgatattgga ataaaaagcg
     2401 aaattgctaa gcaaatttta gagattttaa atgatgattt aaatgtttct aaagccttag
     2461 ctcttttgga tgattttatc agtagtgcaa atttagagtt ggataaagaa agcaaaaata
     2521 aaattttaaa acaaaatatc aaagaagctt taagtgagct agctaaaatt tttggctttg
     2581 gttttatgga tgcaacttta tattttcaat ggggtgtaag caaagaagaa cgagaagaga
     2641 ttgaaaagtt aattttagaa agaactgagg ctaagaaaaa caaagatttt aacacagctg
     2701 atgcaataag agagcaatta aatagtaaaa aaatcactct tttagatact ccaaatggaa
     2761 caatttggga gaaaataaat gcataatgag atgaatttaa aagaggtttt aatacgcttt
     2821 aagccctttt ataaaagata ttggaaacaa tttgctatag ctatttttgg tatgatttta
     2881 gcaagcggag gaactgctgg aagtttttat gctttagagc ctattttaaa ttatattttc
     2941 gttgaaaaaa atgaagcttt actttataca gtaccttttt tgctagtatt gatgtatttt
     3001 tttaaaaatc ttggaactta tttacaaagt ttttatgttt cctttatagg aacagatatg
     3061 ttaagagtat tgcgtgctag ggttttaaaa aatgttttac gcttggatat ggattttttt
     3121 aaacgctata gaagcggaga gcttgtaagt cgttgtacta atgatattaa tgcacttcaa
     3181 agcatagtat caaacattat tcctgatttt tttagagagc ttttaactgc tataggactg
     3241 cttgcggtag tcttgtatca aagtcctact ttggcttttt ttgctttagt gattttgcct
     3301 ttagctattt ttcctttggt atggtttgct aaaaaactta aaaaatatgc aagaaatata
     3361 caagaaacaa attcggattt actttcttat ttgggtgaaa ttttttcaaa tattgaattg
     3421 atcaaagcta atgataatga aaaaaaagaa agtgataaat ttgctaagca taatgatact
     3481 ttatgtaaat taaacctaaa atccgcacgt attgatgcac ttacaagtcc tttaatggat
     3541 atgatgggtt ctgttggggt tgctgtggtg attattgtag ggggtagaga ggttatcaat
     3601 ggttctatga gtgtgggaag ttttatcagt tttgtttcgg cactttttgc gatatatact
     3661 cctttaaagc gtctttcgtc tttatatgga aaacttcaag gtgctgttgc ggcaagtgaa
     3721 agaacttttt atttattgga tttagaacct caaattaaag gtggaagcaa agaattaaaa
     3781 aacattgaaa aaattagctt tgaaaatgtt gaatttgctt atgaaaaccc gcataaaagt
     3841 gttttaaaag gcgtaaattt tgattttgtt aaagggcaaa tgcttgctct tgtagggaca
     3901 agtgggggtg gtaaatcttc tattattaat cttttgatgt atttttatga aaagcaaaaa
     3961 ggtaaaattt tactcaatca agaagatatt agcactttta ccatagaaag cttacatgct
     4021 aaaataggac ttgtaacgca aaatatttat ctttttaatg atagttttgc tgcaaatatt
     4081 gcttatagcg aagagttaga agaagaaaaa gtcatccaag ctttaaaatt ggccaatgct
     4141 tatgaatttg ttaaagaaat gggcgggatt tgggctgaag tgaaagaaca tggtaagaac
     4201 ttaagtggag ggcaaaaaca aagaatagca atcgctagag ctttatataa aaatcctgat
     4261 gtgcttattt ttgatgaagc aacttcagct ttggataatg aaagtgaaaa agcaatagtt
     4321 aaaactatag aaaatttaaa acaagataga ttgattttag tggttgcaca tcgtttaagc
     4381 actatagaaa atgcggataa aatagtagta ttggataagg gtaaggtatt ggcaataggt
     4441 aaagatgaag agcttttgca aacttgttct ttgtatcaaa aatttaaaag caaagaaaaa
     4501 acaaagccca gctttagtta attttagtta gaatttcaaa aaggattaaa aaatggctta
     4561 tgaaatgata aaacttttac tttttaagtt aaaccctgag catgcacatg ctttggttga
     4621 atatagctta agggctttaa gtgccagttt tccaggagct ttaagttttt tagcacacaa
     4681 atatatagtt gatgatgaga gtttaaggca aaatttactt ggacttgatt ttaataatcc
     4741 tgtaggttta gcaggaggct ttgataaaaa tgccactatg ataagacctt tgagtgcttt
     4801 aggatttggc tttttagaag tgggaacttt tactccaaaa cctcaagaag gcaatgaaaa
     4861 gccacgtcta tttagacttg taaaacaaga aagtatacaa aatgctatgg gttttaacaa
     4921 cgaaggtgct gaaaagattg ctttaagact tgcaaaaacc tatccttttg ttttgccttt
     4981 aggggtaaat atagggaaaa ataaaatcac tccaaatgat aaagccttgg aggattattt
     5041 tactttgttt agagatttta aggatttgtg tgattatttt atcgttaata tctcatctcc
     5101 taatactaaa aatttaagag agttgcaaaa tgatgatttt ttaaatacct tgcttgaaga
     5161 agccaaaaaa atcacttcta agcctatttt gataaaaatt gctcctgata tgaaaataga
     5221 tgatgcttta aatttatgtg aaaatgccat taaaaaaggt gcagatgggt ttatattagc
     5281 caatactagt gttgattata gtttattaga taataatcgt acttttggtg gtattagtgg
     5341 aagactgatt acggaaaaaa gtggtatttt tttcaaagaa gtaactaaaa ttctttttgg
     5401 caaaaccttg cttattgcaa gtggagggat tgatagtgct gatattgctt atgagcgtat
     5461 taaaaatggg gctaatttgg tgcaagttta tacagctttg atttttaaag gtccttcttt
     5521 ggtaaaaaat atcaatcaaa atcttataga gcttttaaga aaagatggtt ttttacacat
     5581 tagcgaagct gttggggtaa atttaaaatg attgcttatg aaaaaattca attaaaaaac
     5641 aagcttgaag tttatgcttt gcctgtaaat aaaaatagcg atgtgattag cgttgatatt
     5701 ttttataaag tgggttcaag aaatgagatc atgggaaaaa gtggcatagc tcatatgtta
     5761 gaacatttaa attttaaaag tactaaaaat ttaaaagctg gcgaatttga tgagattgtt
     5821 aagggttttg gtggtgtgga taatgcaagc acaggttttg actatactca ttattatatt
     5881 aaatgtgcga agaaaaattt agataaagct ttagagcttt ttgcagaact tatggcgaat
     5941 ttaaatttaa aagatgaaga atttcagcct gaaagagcag tggttttaga agagcgtaga
     6001 tggagaacag ataataaccc tttaggatat ctttatttta ggctttttaa tcatgcattt
     6061 atgtatcatc cttatcattg gactcctata ggttttttta aggatataga aaattggagt
     6121 attgaagata ttaaagaatt tcacagtatt tattatcaac ctaaaaatgc gattttactt
     6181 gtaagtggcg atatagaaag taaggaagtt tttgagcttt caaaaaaaca ttttgaaaag
     6241 attaaaaata ctaagactat acctaaaatt cacacaaaag agcctaagca agatggagta
     6301 aaaagaatat atttacataa aaactcagat actgaactat tagcccttgc ttataaaatt
     6361 ccaaatttca agcacaaaga tatacctgct ttaaatgctt tatccgagct tttaggaagt
     6421 gggaaaagtt ctttaatgag tgaaattttg attgataaat taaatttaat caatgattat
     6481 tatgcttatg ttaatgattg tatagatgaa aatttattta tttttatttg taattgtaac
     6541 cccaatgtta atgcagaaaa agtagaaaaa gagcttttaa aaatcattga taaacttaaa
     6601 atgggtaaaa tttctcaaaa agatttgcaa agagtgaaaa ataatgtcaa aagtgatttt
     6661 attttctcac ttaacaatgc tagtgcagtg gcaaatattt atggttcata tctagcaaga
     6721 ggagatatca atcctttgtt aaattatgag aaagatatac aaaatttgga attaaaagat
     6781 ttgatttctt gtgctaaaaa atattttatt caagaaaatt caactacggt aattctaaga
     6841 aaggattcaa atggataaaa atattatcat tggggcgatg acggctctta ttacaccatt
     6901 taaaaatgga aaagttgatg agcaaagtta tgcaagattg attaaaagac aaatagaaaa
     6961 tggcatcgat gcagtagttc cagtaggaac aacaggagaa agtgcaactt taacccatga
     7021 agaacataga acttgcatag aaatagccgt tgagacttgt aaaggaacta aagttaaggt
     7081 tttagcaggt gcgggaagta atgcaactca tgaggcagtg ggtttggcta aatttgctaa
     7141 agagcatggt gctgatggga ttttaagtgt ggcaccgtat tataataaac ctacgcaaca
     7201 aggactttac gagcattata aggctattgc gcaaagtgta gatattcctg tgcttttata
     7261 taatgttcca ggaagaacag gttgtgaaat ttcaacggat actattatca agctttttag
     7321 agattgtgaa aatatttatg gagtaaaaga agcgagtgga aatatcgata agtgtgtgga
     7381 tttgcttgca cacgaaccta gaatgatgct tatttcaggg gaagatgcga tcaattatcc
     7441 tatactttca aatggtggaa agggagtgat ttcagtaact tcaaatttat tacccgatat
     7501 gattagcgct ttaactcatt ttgctttaga tgaaaattat aaagaagcta aaaaaatcaa
     7561 tgatgagctt tataatatca ataaaatttt attttgcgaa agtaatccta ttcctattaa
     7621 aacggctatg tatttagctg gattgataga aagtttggaa tttagacttc ctctttgttc
     7681 tccaagtaag gaaaattttg ctaaaattga agaagtgatg aaaaaatata agatcaaagg
     7741 attttaatga atacagaatt tcaaggaaaa actttagtga ttagcggtgg aactcgcggg
     7801 ataggcaaag ctatagttta tgaatttgct aaagtgggtg caaatatagc ttttacttat
     7861 aattctaatg cgcaaattgc tgatgaaatg gttcaagatt tggagaaaaa ttataaaatc
     7921 aaagctagag cttatgaatt taatatctta gaacctgaaa cctataaaga actttttgaa
     7981 aaaattgatg tggattttga tagagtggat tattttatct caaatgctat catttcagga
     8041 cgtgcggttg taggtggcta tactaaattt atgaagttaa aaccaaaggg aattaataac
     8101 atttttacag ccacagtaaa tgcttttgtt gtgggcgcac aagaagcagc taaaaggatg
     8161 gaaaaagtag ggggtggaag cattatttct atctcatcta caggaaattt agtgtatata
     8221 gaaaattatt caggtcatgg tacagcaaaa gccgctgtag aagctatggc aagatatgcg
     8281 gctactgaac ttggagaaaa aaatatccgt gtaaatgtcg taagtggtgg gcctattgaa
     8341 actgatgctt taagagcttt tacaaattat gaagaagtaa aacaggctac tataaattta
     8401 agccctttaa atcgcatggg gcagcctgaa gatttggctg gagcatgtct ttttctttgt
     8461 tcaagtaagg caagttgggt gacaggacat actttcatcg ttgatggtgg tacaactttt
     8521 aaataaaaat taagaaaaat caatggattt ttcttaaaaa tatttttcaa tcaagtttta
     8581 atttccaccc taaaaaaaca cttaataatg caagtaaaaa aataaaattt aaagtccaat
     8641 taccaaaacc tataaaacct atagataata cgctgtaaaa aaatcctcct acagctgaat
     8701 aaatacaaat cgtacttaaa gatccatttt ctgccatttt tttacatggg cagattttat
     8761 aaaatttttt atcattaaat tgatttttct ttttatttcc caaaaataaa ccaaaaaggg
     8821 caaaaagatt taaaaaaata aaagcatata ataaaatttg atctaattcc attttaatat
     8881 accttaaaaa tatctaagcc aagagggtag atggacttgc tcttctttta aagtagtttc
     8941 ttgtccatgt cctggcaaaa gtttaaaatc ttctttgtaa gtcataactt tttctaagct
     9001 ttgtttcatt aaatttgcat ctgaataagg aaaatcccat cttcctatgc ttctataaaa
     9061 taaaaaatct ccactaaaca tgatattttt acctacaatt tctatcatag tgcaacctgg
     9121 tgtatgtcct ggtaaaaagt gaaatttaaa atcaactccg caaatattta aaatatcttc
     9181 attatctact aaaaaatccg catcgctaga atcatagcct tgattgaaat catcatgtag
     9241 cataaaagca tcatttttat gaatataaat ggggatgttg tattcttttt taaccttagc
     9301 attatcccaa atatgatcat aatgcccgtg agtatttaaa atcgccaaag gtttttttac
     9361 atgttttttg ataaataaaa gtgcatcagt tcctggatca atgataaatt caccctttgg
     9421 ggtaaataaa atatagcaat tagtttcata aactccacaa gcttgtttga taatttgcat
     9481 tttttacctc tttaataaaa aatttgcctt aaataaatat aattatacat taaattttta
     9541 aaaggcaagc tttatggatt ggcaaaagat tacggaaaaa atgtgtgatt ttatacaaga
     9601 aaaagtgaaa aattctcaaa gtcaaggtgt ggttttgggg cttagtggcg ggattgattc
     9661 tgctttggta gcaacgcttt gtaaaagagc tttaaaagag aatgtttttg ctcttttaat
     9721 gccaactcaa atttcaaaca aagccaatct tgaagatgct ttaaggcttt gtgcggattt
     9781 aaatcttgaa tataaaatca tagaaattca aagcatttta gatgctttta taaagcaaag
     9841 tgaaaatacc actctagtat ctttgggaaa ttttgcagcg cgtattagaa tgagtttgct
     9901 ttatgattat tctgctttga aaaattcttt agtcataggc acttctaata aaagcgaatt
     9961 gcttttaggt tatggtacga tttatgggga tttagcttgt gcttttaatc ctataggatc
    10021 gctttataaa agtgaaattt atgccttagc aaaatacctt aacttgcatg aaaatttcat
    10081 caaaaaagct ccaagtgcgg atctttggga aaatcaaagt gatgaggcgg atttaggttt
    10141 ttcttataca aaaatcgatg aaggtttaaa agctttagaa actaatgatg aaaaactttt
    10201 aagaacactt gatccttctt tgattgctat gttaaaaaat cgcatgcaaa aaaatgcttt
    10261 taagggaaaa atgcctgaaa ttttggaaat ttaaacaatg aatgaagaaa aaaattatga
    10321 actttggctt gataattatt tttttaagcc caatttttgg caaaaatgcc ttgcttttat
    10381 acttttacct ttaagtgtgc tttatgcttt ttttgcgatt ttaaatactt tttttcgtaa
    10441 aaaaatagtt tttaaaaagc ctgttattag cgttggtaat ttaagttttg gaggtaatgg
    10501 aaaaaccccg ctttgtaaag ctatagcaag ggaatttgat ggtgttttta tagtacttag
    10561 gggctataaa agaaagtcta aaggtttgtt tgttgttaaa aatcaaaatg aaattttatg
    10621 caccttaaca caaagtggcg atgaagctat ggagtatgct tttgaagaaa atatcaaagg
    10681 tgtgattgtg agcgaagata gagtaaaagg tattgaaaaa gcttttgaat tgggagctaa
    10741 aatcgttgtg cttgatgatg ctttttctaa atttcatatt aaaaaatttg atattttact
    10801 tgaaagtaaa atcaaacctt attttaattt taccttacca agtggagctt atcgtttgcc
    10861 gaaattttat gaaaaaaggg ctgattttat tgcattagaa ggcagggatt ttgtgcgtta
    10921 ttcttttgta aaagaaaatc caaaggctgt tttggtaact gctattgcta aaccttttag
    10981 attgtatgag cattttatca aggcaagggc ttgttatttt tttaaagatc attatgagtt
    11041 taaaaaagaa gaattagaaa atttgctaaa aaaacataat tgcgatacac taatgcttac
    11101 ttttaaggat tttgttaaag ttaaagattt tggttttaaa tgtcaaatta tagaattaaa
    11161 tatagaatta aaagattcat taagagaaaa aataaaaact tatatcaagg agtttgaaca
    11221 gtgaaattgg tcgagagtag aaatgtaaat aatgtatcaa gttttaagga agctttgatt
    11281 aacccaaacg ctccagaagg agggctttac tcacctttaa atttgcctat ttttgaagga
    11341 gaaaaatatg ccaatttgtc ttataaagat tttgctttaa agcttataga aagttttggt
    11401 tttggcgaag aagagctttt taaaaaggct ttgaaaagtt acgaaagctt tgatgataaa
    11461 aatacaccta tttctttgca aaaaatctct gaaaaaacct atattaacga gctttggcat
    11521 gggcctacaa gagcttttaa agatatggct ttacagcctt ttggcgtgct tttaagcgaa
    11581 ttttcaaagg ataaaaatat tttaattatc tgtgctacaa gcggcgatac agggcctgca
    11641 accctaaaaa gttttgaaaa tgcaaaaaat gttaaagtag cttgtatgta tccaaaaggt
    11701 ggcacaagtg gagttcaaga gttgcaaatg cgagctttag ataaggataa cttgaaagtt
    11761 tttgccatag atgaggattt tgacgcagcg caacgcactt taaaagaatt gcttttttca
    11821 aaagattttc aaaatgaaat taaagcttta aattatgagc tttgcgcagc taattctgta
    11881 aattttgggc gtattttatt tcagattatt tatcattatt atgcgagttt aaaacttttt
    11941 aatgagtttt tagaagaagt acaaatcatc gttccaagtg gaaattttgg caatgcttta
    12001 ggagcttttt atgctaaaaa aatgggagct aaaatttcaa aaatcaaaat cgcttcaaac
    12061 gcaaataata ttttgagtga attttttaat caaggcgttt atgatttgcg tgaaaaaagt
    12121 cttaagaaga ctatttctcc agctatggat atacttattt catctaatat cgaaagactt
    12181 ttgtttgcga aatttaaaga taaaagaact aaagaactga tgaatttgtt aaaaaatgaa
    12241 agatatttta aacttgaaaa agaagaatta caaagtttgc aagaagattt tgaggcggat
    12301 ttttgcaccg atgaagaatg tatgcaattt atcaaacaaa gcaagatttt aatcgatccg
    12361 cataccgcaa cttgttttaa aatgcttgat cctttaaaac ctagcattat cacttctaca
    12421 gcagaatgga caaaatttac tccaagtatg ataaaagctt tatatgatag ggattctaag
    12481 aatgaaaaag aagatttaaa atttatagct aaagagttta atgtccaagt taaagatgaa
    12541 attttggctt tatttgattt gaaaaatagc gatgaaaagg tatttgaagc cagaaatata
    12601 aaaaaagaaa ttttagattg gatgcaaaaa tgattattat tcctgcaaga ttaaaatcaa
    12661 gtcgttttca tgagaaaatt ttatgtgata taggtggagt gcctatgttt gtggctactg
    12721 caagaagagt aagtagcgtg gatgaagttt gtatagcttt agacgatgaa aaggttttaa
    12781 gtatcgctaa agaatatggt ctaaatgcgg ttttaacaag caaagatcat gaaagcggta
    12841 cggataggat taatgaagct tgtaagaaac tagctttaaa agatgatgag attattatca
    12901 atgtccaagc tgatgagcct tttatagaat gtgaaaattt attaaaattt aaagaatttg
    12961 caagtttttg cttggataaa aaagctttta tggcgagttg ttataaaaaa atcactcaag
    13021 aagaagctat ggatcctaat ctggttaaag tgctttgcga taaagaaggg tatgccttgt
    13081 atttttcaag agctaaaatc ccttatgaaa gagaaaatta cgaggaaagt tttaaagggc
    13141 atttaggcat ttacgcttat agtgtcaaag ctttaaggga gttttgttct ttatcaagtt
    13201 ctgcacttga aagagcggaa aaattagagc agttaagagc tatagaaaat ggtaaaaaaa
    13261 tcaaaatgct tgaaatttca acaacaagca tggggattga tactaaagaa gactatgaaa
    13321 gggctttaaa aatttattta gaaaaataac tccaccccaa aacggaacag atcttgctta
    13381 tattatttta atatatttag gttgaaggca aaaaatctaa atcaaggaat taatatgagt
    13441 atctttagta tcaatgataa ctcaaactat gcaaagtaaa gagagtaaag aaagtaaaga
    13501 aaattctaaa ataagttttg ctaatgcttt tttaaaacaa aatgctagta agttaaatga
    13561 aattcaaaat gcaaattcac aaactctagc aagaagtgaa gcattaaatt ctactaatac
    13621 aacaaatact agcaataata ctaattttag tataagtagt aagacaagtt ctcctaatta
    13681 tgatatatct agtgaattta aaaactctat ttatactcta aaatacaaac aagtagatat
    13741 aagtaatact tctactaata cagcctatgg ttatagtgta gataaagatg gttatatggg
    13801 aagtgatttt aataaagctg cgggacttcc tgaagatttt aagatacata aatctacttt
    13861 ggatgagatt aaaaaagctg ccgaaaatga tcctgttgtt tcaagtacaa aagaatactt
    13921 aggcgtaagc agttattatt ctaatataga tatagcaaat actataaaac aatattataa
    13981 tcttttttct aatgctctag gtcaaagctt ttcaaatgat aaaacaagtt ttagtgaagc
    14041 agatataaat tctatgccta gtggttatgg tgtaagtgga acgcaatgga tggactttaa
    14101 tgagccaagc aatagaatga atattacagg tttaaaagat ttttcaaatt ctttaatttc
    14161 aaatgtttat aaaacccctg aacaagcaaa agaagctgat gaaatttgac ttgattcagg
    14221 atgtatgatc aaaggattat catctgagac tttaggttta tccttagaag aaatcaaaaa
    14281 tgtttctaga ggtgaagatt ggcaatttaa tcctgatatg tcagtttatc cacaaaatga
    14341 agatggaagc tattctaaag aaactttgtt tatgagtttt ttaaaagctc aaggtggaca
    14401 acctgttgag agtctaaaaa ccacacttaa tccaaaatta gaagcttaca agagggctat
    14461 ggctaaagag agttttagtg gtcctgcaat taacattgat agtattatga caggtaaaag
    14521 tgactttaaa agctttttta gatactgggc agagcgtggc atagaaggtg atttatatat
    14581 gtatgaaaat aacatttcta aagaatctgc tatgggtaat tgggctttag atgctgagat
    14641 taaacaagct cttgctaatg gttggaaagc aaaacctagc actattgatt cctacgctga
    14701 ttctataatg gatagattaa ataatctttt gggacaaact agggtttagg aagtattaat
    14761 tttttaagtt tgaaataaat tgctaataac aaaataagat aaaactagta taattttttt
    14821 acaaaaaaaa ttgaaaggaa attatgaaaa aaattatttt gatttttatc tctttttttg
    14881 ctttaaattt gagtgcaaaa gatttggttg taggaatgga gcttggatat ccgccttttg
    14941 aaatgagcga taaaacaggc aaagcaagtg gaattagcgt ggatttttta gaagcttttg
    15001 caaagaaaaa cggctataaa cttgtagtaa aaaatatcgc ttgggatggt ttaatacctg
    15061 ctttaaaaac agccaagata gatcttatta tgtcctctat gacaattacc gataagagaa
    15121 agaaagtggt ggattttagc attccttatg ctaaggcaaa tttggctatt ttaactcctt
    15181 tgaactctga tattacaaat atcaaagatt tagataaaaa gggcaaagtt ttggctttaa
    15241 agcgtggttc tacagggcat ttatatgcgg ttaaaaattt aaaaaatgca actattaatt
    15301 tatttgataa agaaaatgct gctattttgg aagtgattca aggcaaggct gatggatttt
    15361 tttatgatca acttacgatt tatcggactt ggcaaaagca tcaagataca accagagcca
    15421 ttttagcgcc ttttcaagaa aatcctgagt tttggggtat agctgtaaga aaaggtgatg
    15481 aagctttaaa ggacaagctt gataatttca ttgatgagag taggaaaaat ggctttttag
    15541 attttttggg caataagtat ttaaaagaca ttaaagaagt ttttaagcaa aataatatca
    15601 cttttttctt gtaggctttt aataaaatat tgataattaa tattaatttt atgaattttg
    15661 atatacaata tcattatcta aattttaaat aaaaggattt aagataatga aaaaagttgc
    15721 attttttttg ttatttttgt ttttatcttg cactgtacta aacgcagcta gggagtattg
    15781 caaatatgct tatcaagaag atagagctat acctttaatt ttaaattatg gaataagatt
    15841 gggggtagta ggtgctgggg ttgcgaatgc acctgcaccg ggcggaagta cttacaattc
    15901 aaaaattgac atgatggctg caagatgcca ctaagcttag tttttgggtg tattttacaa
    15961 tgctagaatt tatttttact cttattttag attttacttt ttattctatc aagaccctag
    16021 aaaaagtctt tctagggcga acagccttag taattctttt tgttgttttt atagctcttt
    16081 tttgcgttaa aggcttgttt ttgtatatac ttttagcttt agaattattt ttgcttttgt
    16141 atctttttct tggaattttg tttttaagat tttataaatc ttaggttaca aagctttcca
    16201 caagcctttg cactagcaaa ttccatccat ccactaatac aaaaattaag agtttaaaag
    16261 gtaaagagat catagtagga ggtagcatca tcatacccat agccattaaa actgagctta
    16321 caaccatatc tatgactaaa aagggtaggt agattaaaaa ccctatttca aaagcggttt
    16381 taagctctga aatcataaaa gcaggaacta aaaccgtaag gggaacatca tctatggttt
    16441 tgggattggg tagattgcgt atgcgataaa aaagggctaa atctttttcg cgagtatttt
    16501 taagcataaa atctttaaaa ggctttgctc cttttataaa agcctcttca tagcctattt
    16561 tttctgctaa ataaggtttt ataccttcat tataggattt tgtagctaca ggttccatga
    16621 taaaaaaagt taaaattaaa gccaaggtta ctaaaatggt attaggtggc atactttgcg
    16681 tccccatagc ttgtcgcaaa aatgaaaata ctacaataag acgcaagaaa gaagtcataa
    16741 caaaaactat acttggagcg agcgcaagta tggttaaaac aatcactata tttaaagtag
    16801 taacaagctg attaggtgta ttgggtgcac ttaagcttaa atttactgta gggatagttg
    16861 cttcagcagc aaataagctc atgcttaaaa gtaaaaataa taatattttt ttcaaaattt
    16921 aaaaaccttt ttttgttttt tactaaagaa atttaaattt tatcttttga tgactaaaaa
    16981 ctagtttaag ggtattagga ttttaacttt aaactgctaa aatagtcttt tagacttctt
    17041 aataacaaag gtaaaaaatg aaaacttcta ttttgatttt agcggcagga ttaggcacta
    17101 gaataaaatc acaaaagcca aaggttttgc aagagctttg tcaaaaaagt atgattttac
    17161 acattttaaa aaaggctttt gctttaagtg atgatgtaag tgtagtttta tcgcatcaaa
    17221 aagaacgcgt tgaaaaagaa attttagaat attttccaaa aacacaaatt ttagagcaag
    17281 atttgcaaaa ttatccagga actgcgggag ctttaagtgg gtttgagcct aaaaatgaaa
    17341 gagtgttgat tctttgtggt gatatgcctt tggttgagca aacaagtttg gaagctttgt
    17401 tgggtaataa tgcaaaatta aatctagcag tttttaaagc aagagatcct aaaagttatg
    17461 gtagggtggt gataaaaaac gatagcgttg aaaaaattgt tgaatttaaa gatgcaaata
    17521 cgcaagaaaa agagataaat acttgcaatg ctggggttta tgtgattgac tcgaggcttt
    17581 taaaagagct tttacctttg attgataaca ataatgcggc aaaagagtat tatttaaccg
    17641 acattgtaaa actagcaaaa gaaaaagatg tgatgattaa agcagttttt gtagatgaag
    17701 atgaatttat ggggattaat gataaatttg aactcagtat agctgaaaat ttcatgcaaa
    17761 aaaaaattaa aaaatactgg atgcaacagg gtgtgatttt tcatttaccg caaagcactt
    17821 ttataggtgc agatgttgaa tttgtaggtg aatgtgaagt atatgaaaat gtaaggatag
    17881 agggcaaaag taagattata aactctatca ttaaaagttc aagcgtgata gaaaattcca
    17941 tcgtagaaaa tagcgatgta gggcctttgg cacatttgcg tccaaattgt gagttaaaaa
    18001 acactcatat aggaaatttt gtagaatgca aaaatgcaaa gttaaatacc gtaaaagcag
    18061 ggcatttgag ctatttagga gattgtgaga tagatagtgg aaccaatata ggctgtggga
    18121 ctatcacttg taattatgat ggggtaaaaa agcataaaac catcatagga aaaaatgttt
    18181 ttgtaggttc tgatacgcaa tttatcgcac ctgtaaaaat cgaagatgaa gtaatcatag
    18241 cagcaggaag cacagtaagt atcaatgtag aaaagggtgc tttgtttatc aatagagcag
    18301 ggcataaaat gataaaagat tattattata agaaatttca aaaatgaaaa ccatactttt
    18361 agccattagc ggtagtatag ctttttataa atcttatgag cttatttctt tgtttaaaaa
    18421 agaaggcttt agggtaaaag ttttgctttc taatggtttg ttaaaatttg ctagcaaaat
    18481 gagttttgaa gccttggttg atgaagtttt atgtgaggaa aatgaaagtt ggcaaaattc
    18541 aaacaatcac atagctttta gcaaggatgt agaccttgtt ttgtttgccc ctgcaagtgt
    18601 taattctatc aataaacttg cttttggtat agcggataat ctttttatcc aaaccttaat
    18661 cgcagcaaat aaatctctta tcatagctcc tgcggcaaat acaaatatgt ttcatcattt
    18721 tagcacgcaa aattctttaa agatgcttaa agaaaataaa gctttgatta tagagcctat
    18781 ttgtaaagtt ttagcttgta aagatgaagg cgtaggagcc ttagctgaag ttaagaatat
    18841 ttttaatatc gtcaaaagag aacttttaaa agaaaagttt tggtgcgata aaagtgtagt
    18901 tatcacaggt ggcagcacaa aagaaaagat cgatgatgtg cgttgtgtga gtaatttttc
    18961 aagtggaaaa atggcaaagg ccatagctga tgctttttat tttttaggag ctagggtaaa
    19021 acttttaagc tctgtggaat ttgatacgcc ttatgagctt tgcaaatttg aaagttctaa
    19081 ggatctaaag gagcttttgg ataaaaattt aaatcatgac tttttgatta tgacggctgc
    19141 ggtaagtgat tttatccctc aaagtgtaaa aggaaaaatt aaaaaaaatg agcatttaca
    19201 gggtttaaat ttgcatctat ctttaaatga agatttgctt aaaacttgca aatttcaagg
    19261 caaaaagata ggttttaaga tggaatttga ttctcaaaat gccttagaaa atgcgaaaaa
    19321 atctttaaaa gataagcaac ttgatatggt ttgtcttaat atcattgatc aaaaaaatta
    19381 ttttggaagc gatcaaaatg agctttattt tatcacttta aacaatgaaa ataaaagcac
    19441 tttgcaaagc aaagaaaaat tggcatttga attagtaaaa tggtgtgaaa aattatgagt
    19501 atgattaatt ctaccttacc tatacaaatg aaagttttag ctaaatcagg ttatggacat
    19561 tatacgcttt tattaaatca taaaaagatt caaaccaaaa gcatgataga gcttgaaatt
    19621 ggtgctgaat atttagctga actttatatg caaaatggtg gagttataca atttaaacat
    19681 ctttcaaagc gtcctaattt caaacctttt gaagagggat tggctttgat aatcgctatt
    19741 ttagaggata aaatttctta taaaaaattc attatacaaa atcttttaga ttgtaaagat
    19801 atagagcgtt atcagatatt aaaagaaatg ctttttgcaa gttttgaaaa tatttatcat
    19861 attcctttta actttgaaaa taaatcttgc ttgtttcaaa tgcgtaaaag agcaaaatat
    19921 ttagaaattt acttatattt tagcgttttt ggagctttaa aaattttaat agactcgcaa
    19981 ggcattagtg tttttacacc ttttgccaag gtgcaaaaat ttttaaacga acatttagat
    20041 tttaatgtat ctcaagaaaa caagattgaa cctttgtttg ttttcaaaag gctttttgat
    20101 tttaaaggat gaaaaatgaa tgaattaaaa caccttgctg ttgttatgga tggcaatagg
    20161 cggtgggcta gagctaaggg ttttttggca aagcttggat attcccaagg agtcaaaact
    20221 atgcaaaaat tgatggaagt ttgcatggaa gaaaatattt caaatttaag cctttttgct
    20281 tttagtacgg aaaattggaa gcgtcctaaa gatgaaattg attttatctt tgaactttta
    20341 gatcgttgtt tagatgaagc tttagaaaaa tttgaaaaaa ataatgtgcg tttaagagct
    20401 ataggtgatt tatcgcgctt ggaagataaa gtaagagaaa aaattacctt agttgaagaa
    20461 aaaacaaagc attgtgacgc actttgtgtt aatttggcta taagttatgg tgcaagagat
    20521 gagattataa gagctgctaa gcgtgtgatt gaaaaaaaac ttgagctaaa tgaagaaaat
    20581 ttaacgcaaa atttagattt acctttagat gtggatttga tgcttcgcgt tggaaacgct
    20641 aaaagacttt caaatttctt actttggcag tgttcatatg ctgaaattta ttttagtgaa
    20701 actttatttc catctcttac caagagagaa tttaaaagga ttattaaaga atttagaaat
    20761 agagaaagaa cttttggaaa atgatatttt tcataataat tctaggggct tgtttgggtt
    20821 ctttttgcac aagtttggca agtaggataa ttgaaaaaaa actctttttt atctcgcgct
    20881 ctttttgttt ttcttgtgat acaaaattaa aatactatga aattattcct attttttctt
    20941 atattttttt aaaggcaaaa tgtcaaactt gtaaatgtca tttgtctatt tctttgttaa
    21001 tcaatgaaat tttaggcgca attttgctta ttttgg
//
LOCUS       DAPIWQ010000012        20300 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.012, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000012 DAPIWQ010000000
VERSION     DAPIWQ010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20300)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20300)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20300
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.012"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            38..1792
                     /locus_tag="RJ267_000329"
     CDS             38..1792
                     /locus_tag="RJ267_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388214.1"
                     /translation="MFDKIHYYYFNANYEKCLNLSEQFLKESPKFALEFATLSSYKLS
                     LFQKALYYAQELFSLNPTSFNGLMLAKSYIENLRLDEALNLLQTLLTRKDDLEDELKL
                     ELAFIYKLSNKLEESEQIFKELLSKDMYNLNLWKNYAEIYFKHDFTKALNAHEHLCHF
                     MQDLIDKLQKGIIAEQTNLNLVKLEDRLHSKTKENLTISKIEDFLTHQILPQKAYLLF
                     KLFRISDSLELFQSLQEANQHHAQFWQNYAKVLEFNSNYQEAYHAYKKCLSLDSHATY
                     QFDLAYLLMRMGVDDNFEEGKKYYESRLFYAHNETFSTYHYNESLKAFNKFGVDAFKN
                     KEVLVFCEQGFGDTIMYARCLEKLCKIASKVLFAPQSAMYEMFKNQIKFLNQNDDIFK
                     NVKVLKNLPTNFDYAIPICSLPFFIDIKLDEILRLKTPILPQKKPHNQRKKLGIFYAT
                     PNAENSDLLRNVKFEFLFDVLKDLDYEIISFQMQLKEELPKVIEDRSKLIKNWNDTLN
                     YLYDIDCMLSIDSAIAHLSLAMDIPTIVLLHPRFDWRWGKFENPKSYFWPKAKCFIIK
                     EQEETKRNLQKLIKDILN"
     gene            complement(1796..2563)
                     /locus_tag="RJ267_000330"
     CDS             complement(1796..2563)
                     /locus_tag="RJ267_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388215.1"
                     /translation="MKMRYCFILFLSLVLSSNLLANNFSQKKVIKIEKSADSFEVIDL
                     NQNVANPNLNQQKALFDSSTLIEKKSQITKDKDIDFAIVLTSRKNFGYFLDGFRVSDK
                     EFSTLFAKNLIQSLKLNWVNSAANGIYQSPKTLSYFSPKDAKLINVSPFLTQEKDKAK
                     MYAKFTDYVVVVNLQDFYVNITNYFIITSKEGVANVNFKIISTSNGKILVAKNAKLNL
                     TLKNQDAKQNYQDIINQMPKMLADVIKNQIFHLKLLN"
     gene            complement(2603..3367)
                     /locus_tag="RJ267_000331"
     CDS             complement(2603..3367)
                     /locus_tag="RJ267_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HDV7388216.1"
                     /translation="MLNLDKFLEIAINASNQASKAILEERKNFKTWEKEDKSPLTSAD
                     LASNKILNDILGSTDIKILSEEKLLSKEECEELKTFWLIDPLDGTSGFLKGSDEFCVM
                     ISLVHDNRPVLSLIQNPSKGDIFYAHAKTKVYKNDKPLQIDQQEYEKNKYKALLSVNH
                     LSKEDEDFAKEHQLEAINIGSGLKFCAILEARAGVYKRFEKLNIWDIVAGDFLINQNG
                     GFMGDFSKKYILYSPLNYKSSPFICVSSRNFLQDFL"
     gene            complement(3447..4715)
                     /locus_tag="RJ267_000332"
     CDS             complement(3447..4715)
                     /locus_tag="RJ267_000332"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HDV7388217.1"
                     /translation="MSNSVTITDNRNGKSYEFPIYDGTTGPSVVDMSSFYKQTGMFSY
                     DEGLTSTATCKSKITYIDGENGILMHRGYPIEWLAENKLYLDVVHLLLYKELPDATRL
                     EAFRYEMKKRSFIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVKEEYM
                     EMAARIVAKIPTIVATAYRYKHGFPMAYPNLDRGFTENFLYMLRTYPYDHVELKPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHAHPYACIAAGIGALWGHAHGGANEGVIRM
                     LEQIGSVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALSDDYFVQRGLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQESLKIVRPRQLYLGETSKI"
     gene            complement(4830..6005)
                     /locus_tag="RJ267_000333"
     CDS             complement(4830..6005)
                     /locus_tag="RJ267_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDV7388218.1"
                     /translation="MHQSVIDPQGLIDLKILIVIALCLLFSPHIAKILRLPLSATEII
                     LGAIIAYFGFIGKSENFALLANVGFYYLMFIAGMEVNLRAFFNMDKEVAKKSFFYIFL
                     LYALSSLIVWIFGLSLVFVIIIPVMSVGLLSLLFKDFGKECYWLNIAMIVATLAEVIS
                     IVLLTIAGAFLREGTGIIDVAQSILYLNIFLGLCLLGFKMLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMVITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSTFG
                     HGFLIPIFFIHIGSTFDLKMILDYKIVLQAFLLMFVMVGLRILCASVFLKRIGFKNMI
                     LFGLSHSMPLTLLIATATLGYSGKVIDEKLYSALILTALFEAIIVMSMIKFLSNSKK"
     gene            complement(5986..6822)
                     /locus_tag="RJ267_000334"
     CDS             complement(5986..6822)
                     /locus_tag="RJ267_000334"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HDV7388219.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAHVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLEYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLESSKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPRLSADEALKIVRDTKEALPQ
                     SVVMVAGGREVVLRERQYEIFQAGAGAIVIGDYLTTKGEEPSQDIIKLKEMGFTFASE
                     CH"
     gene            complement(6824..8926)
                     /gene="topA"
                     /locus_tag="RJ267_000335"
     CDS             complement(6824..8926)
                     /gene="topA"
                     /locus_tag="RJ267_000335"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HDV7388220.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGI
                     KIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD
                     ENTLPRIVFHEITKSAIENALKNPRKLNMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEVYSISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAVENARKFIQANFGKDYLPSKANVY
                     TTKTKGAQEAHEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSPAISQTQ
                     NVFVKNDRVVFKISGRKILFDGYYKVYGDMDKDKILPNFKIGQNLKVQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVTIDKKQLIPSDVAFNVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMRKIEEGKTKIASQKTV
                     TKLGESCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKSESKNESENTAAKAKANG
                     TGITCPSCQKGEIVERFSKRGKFYGCSAYPKCNFISKYKPSEEKCEECGETLVIKELK
                     KGTFLECLKCKIKKEMKD"
     gene            9121..10394
                     /locus_tag="RJ267_000336"
                     /pseudo
     CDS             9121..10394
                     /locus_tag="RJ267_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(10422..11687)
                     /gene="secY"
                     /locus_tag="RJ267_000337"
     CDS             complement(10422..11687)
                     /gene="secY"
                     /locus_tag="RJ267_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HDV7388221.1"
                     /translation="MNRALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDSMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLM
                     WLGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFAIFALILIT
                     IGVIIYIELGERRIPISYSRKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNGYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTSSYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFHFGGTSVLI
                     VVQVALDTMRKIEAQIYMSKYQTLSAVGL"
     gene            complement(11687..12079)
                     /locus_tag="RJ267_000338"
     CDS             complement(11687..12079)
                     /locus_tag="RJ267_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HDV7388222.1"
                     /translation="MNLTKAAGSTHKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIQKPYVINVEKITAVKELSEITFESIKSVHKISKSV
                     NKIKLIGASAKDLVSKIKDENISVTGSK"
     gene            complement(12084..12527)
                     /gene="rpsE"
                     /locus_tag="RJ267_000339"
     CDS             complement(12084..12527)
                     /gene="rpsE"
                     /locus_tag="RJ267_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HDV7388223.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRTTIKALTMLKG"
     gene            complement(12539..12895)
                     /locus_tag="RJ267_000340"
     CDS             complement(12539..12895)
                     /locus_tag="RJ267_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HDV7388224.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKVKKIEQAVFDRNGYVYHG
                     VIAALAESLRENGIRL"
     gene            complement(12905..13441)
                     /gene="rplF"
                     /locus_tag="RJ267_000341"
     CDS             complement(12905..13441)
                     /gene="rplF"
                     /locus_tag="RJ267_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HDV7388225.1"
                     /translation="MSRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEIVVDKNTIAVKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            complement(13520..13915)
                     /gene="rpsH"
                     /locus_tag="RJ267_000342"
     CDS             complement(13520..13915)
                     /gene="rpsH"
                     /locus_tag="RJ267_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HDV7388226.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGT
                     IVVSTSHGVLANDEAYKAGVGGEILCTIW"
     gene            complement(13925..14110)
                     /locus_tag="RJ267_000343"
     CDS             complement(13925..14110)
                     /locus_tag="RJ267_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HDV7388227.1"
                     /translation="MAKKSMIAKAARKPKFKVRAYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            complement(14112..14657)
                     /gene="rplE"
                     /locus_tag="RJ267_000344"
     CDS             complement(14112..14657)
                     /gene="rplE"
                     /locus_tag="RJ267_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HDV7388228.1"
                     /translation="MMRLKEKYNQSIKPALVKEFDIKNPMLIPVIEKVVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMYAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKQAQKLLELIGVPFTKGK"
     gene            complement(14661..14894)
                     /locus_tag="RJ267_000345"
     CDS             complement(14661..14894)
                     /locus_tag="RJ267_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HDV7388229.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            complement(14894..15262)
                     /gene="rplN"
                     /locus_tag="RJ267_000346"
     CDS             complement(14894..15262)
                     /gene="rplN"
                     /locus_tag="RJ267_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015106543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HDV7388230.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            complement(15262..15513)
                     /gene="rpsQ"
                     /locus_tag="RJ267_000347"
     CDS             complement(15262..15513)
                     /gene="rpsQ"
                     /locus_tag="RJ267_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HDV7388231.1"
                     /translation="MAFKREIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            complement(15523..15708)
                     /gene="rpmC"
                     /locus_tag="RJ267_000348"
     CDS             complement(15523..15708)
                     /gene="rpmC"
                     /locus_tag="RJ267_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HDV7388232.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     QVKKDIARINTAINALR"
     gene            complement(15695..16120)
                     /gene="rplP"
                     /locus_tag="RJ267_000349"
     CDS             complement(15695..16120)
                     /gene="rplP"
                     /locus_tag="RJ267_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HDV7388233.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            complement(16123..16824)
                     /gene="rpsC"
                     /locus_tag="RJ267_000350"
     CDS             complement(16123..16824)
                     /gene="rpsC"
                     /locus_tag="RJ267_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HDV7388234.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLHKGMQPEKTE
                     ESAPAKKPRRTRRGK"
     gene            complement(16824..17249)
                     /gene="rplV"
                     /locus_tag="RJ267_000351"
     CDS             complement(16824..17249)
                     /gene="rplV"
                     /locus_tag="RJ267_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HDV7388235.1"
                     /translation="MSKALIKFIRLSPTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVIVKSCRVDAAAVLKRFRPRARGSASRIRKPTSHILVEV
                     AKAEVKSEEKKTVAKKTTTTKAPAKKTTSTKKATVKKES"
     gene            complement(17260..17541)
                     /gene="rpsS"
                     /locus_tag="RJ267_000352"
     CDS             complement(17260..17541)
                     /gene="rpsS"
                     /locus_tag="RJ267_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HDV7388236.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTITPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            complement(17543..18373)
                     /gene="rplB"
                     /locus_tag="RJ267_000353"
     CDS             complement(17543..18373)
                     /gene="rplB"
                     /locus_tag="RJ267_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HDV7388237.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALIAYKDGEKR
                     YILQPRGLSVGDIVAAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            complement(18375..18656)
                     /locus_tag="RJ267_000354"
     CDS             complement(18375..18656)
                     /locus_tag="RJ267_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HDV7388238.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKIKRFRGRLGQRNNYKKFYVKLPEGVSLENTEA"
     gene            complement(18659..19273)
                     /gene="rplD"
                     /locus_tag="RJ267_000355"
     CDS             complement(18659..19273)
                     /gene="rplD"
                     /locus_tag="RJ267_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HDV7388239.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSVLESITKEG"
     gene            complement(19270..19845)
                     /locus_tag="RJ267_000356"
     CDS             complement(19270..19845)
                     /locus_tag="RJ267_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HDV7388240.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTIKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            complement(19855..20166)
                     /gene="rpsJ"
                     /locus_tag="RJ267_000357"
     CDS             complement(19855..20166)
                     /gene="rpsJ"
                     /locus_tag="RJ267_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HDV7388241.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
BASE COUNT         6263 a         3800 c         2809 g         7428 t
ORIGIN      
        1 gataatattg gatttaatgt aaccatcaag gaaaaatatg tttgataaaa ttcattatta
       61 ttattttaat gctaattatg aaaaatgttt gaacttgagt gagcaatttt taaaagaaag
      121 tccaaaattt gctttagaat ttgctacgct ttcttcttat aaactttctc tttttcaaaa
      181 agctttatat tatgctcaag agcttttttc tttaaatcct acaagtttta atggtcttat
      241 gcttgctaaa agctatattg aaaatttaag acttgatgaa gccttgaatt tattacaaac
      301 acttttaact cgcaaagatg atttagagga tgaacttaag ttagaattgg cttttattta
      361 taaactgagt aataaactag aagaatctga acaaattttc aaagaattgc tttctaaaga
      421 tatgtataat cttaatctat ggaaaaatta tgcagaaatt tattttaaac atgattttac
      481 taaggcatta aatgcacatg agcacttgtg tcattttatg caagatttga ttgataaact
      541 acaaaaagga atcattgctg aacaaaccaa tcttaattta gtcaaactcg aagataggct
      601 tcatagtaaa accaaagaaa atcttaccat ttctaaaata gaagattttt taactcatca
      661 aattttaccc caaaaagcat acttgctttt taagcttttt agaatatctg attctttaga
      721 actttttcaa tcactacaag aagccaatca acaccatgca cagttttggc aaaactatgc
      781 taaggtatta gaatttaact caaactatca agaagcttat catgcttata aaaaatgtct
      841 tagcttggat tctcatgcaa cctatcaatt tgatttggct tatcttttga tgcgtatggg
      901 agtggatgat aattttgaag agggcaagaa atattatgaa agcagattat tttatgctca
      961 taatgaaact ttttctactt atcattataa tgaaagccta aaagctttta ataaatttgg
     1021 cgttgatgct tttaaaaata aagaagtttt agtattttgc gagcaaggct ttggcgatac
     1081 tataatgtat gcaagatgct tagaaaaact ttgcaaaatc gcttcaaagg ttttatttgc
     1141 tcctcaaagt gccatgtatg aaatgtttaa aaatcaaatc aaatttttaa atcaaaatga
     1201 tgatattttt aaaaatgtaa aggttttaaa aaatctacct acaaattttg attatgctat
     1261 tcctatttgt tctttgcctt tttttattga tattaagctt gatgagattt tacgattaaa
     1321 aacacctata ttgccacaga aaaaaccgca taatcaaaga aaaaaacttg gtatttttta
     1381 tgctactcct aatgctgaaa attctgattt attaagaaat gtaaaatttg aatttttatt
     1441 tgatgtatta aaagacttag attatgagat catttctttt caaatgcaat taaaagaaga
     1501 attgcctaag gtaatagaag atagaagcaa gcttataaaa aattggaatg atactctaaa
     1561 ttatttatat gatattgact gtatgcttag tattgatagt gctatagcgc atttaagttt
     1621 agctatggat attcctacta tagttctttt acatcctagg tttgattggc gttggggaaa
     1681 atttgaaaat cctaaaagtt atttttggcc aaaagcaaaa tgttttatca taaaagaaca
     1741 agaagaaaca aaaagaaatt tgcaaaaact gattaaagat attttaaact aaagcttagt
     1801 ttaagagctt taggtggaaa atttggtttt tgataacatc agctagcatt tttggcattt
     1861 ggtttataat atcttgataa ttttgctttg catcttgatt ttttaatgtc aaatttaatt
     1921 ttgcattttt tgctacaaga atttttccat tgcttgtaga aatgatttta aaattaacat
     1981 tagccacacc ctctttacta gttatgataa aataatttgt aatatttaca taaaaatctt
     2041 gcaaatttac caccacaaca taatctgtaa atttggcata cattttagcc ttatcttttt
     2101 cttgtgttaa aaaaggactt acatttataa gttttgcatc cttagggcta aaatatgaca
     2161 aagttttagg actttgataa ataccatttg cagcagaatt aacccaatta agctttaaac
     2221 tttgaatcaa atttttagca aataatgtag aaaattcctt atcactcacc ctaaaaccat
     2281 ctaaaaaata accaaaattt ttcctagaag ttaatacaat ggcaaaatca atatctttat
     2341 ctttggtgat ttgcgatttt ttttcaatca aggtagaact atcaaacaat gctttttgtt
     2401 gatttagatt tggatttgca acattttgat ttagatctat tacttcaaaa ctatctgcgc
     2461 ttttttcaat tttaataact tttttctgag aaaaattatt cgctaaaaga ttagaactta
     2521 aaactaaact taaaaacaaa atgaaacaat acctcatctt catccttata aactatttaa
     2581 atataaaatt atactcttta ttttataaaa aatcttgtaa aaaattccta gatgaaacac
     2641 aaataaaagg actggattta taatttaaag ggctatataa aatgtatttt ttagaaaaat
     2701 ctcccataaa tcctccattt tgattaatca aaaaatctcc tgctacaata tcccaaatat
     2761 taagcttttc aaatctttta taaactcctg ccctagcctc taaaatagca caaaatttca
     2821 atccagagcc tatattaata gcttctaatt gatgctcttt tgcaaagtct tcatcttctt
     2881 tgctaagatg attaacactc aataaggctt tatatttatt tttctcgtat tcttgctggt
     2941 caatttgcaa aggtttatcg tttttataaa ccttggtttt tgcatgagca tagaatatat
     3001 caccttttga tggattttgt atgagtgata aaacagggcg attgtcatga accaaactta
     3061 tcataacgca aaattcatca ctgcctttta aaaaaccact tgttccatca agaggatcga
     3121 taagccaaaa agtttttaat tcttcacact cttctttgct aagtaatttt tcttctgata
     3181 gaattttaat atccgtagaa cccaaaatat catttagaat tttattagaa gcaagatctg
     3241 ctgatgtaag cgggctttta tcttcttttt cccaagtttt gaaatttttt ctctcttcta
     3301 aaatagcttt agaagcttga ttgctagcat ttatagcaat ttctaaaaat ttatcaagat
     3361 taagcatgat tataaacttt ctataagatt ttttaaaatt atacaagaag attttgtgga
     3421 atttttaatt tccacaaaaa ttttaattat attttactag tttcacccaa ataaagttgt
     3481 cttggacgga ctattttaag actttcttgc tctttttgtt ctatccactg agctatccat
     3541 cctggggtgc gccctataac aaataaagta gcaaacattt catttggaat acctaaggct
     3601 tttaaaataa gtccactatg aaaatcaaca ttcggatata gccctctttg aacaaaataa
     3661 tcatcactta aagcaatctc ttctatacgc gttgctactt taataagatt ggtatcaata
     3721 cccaactcat caataagttg atcacgaagt tttttaagta cttttgctct aggatcaaaa
     3781 tttttataaa ccctatgccc aaagcccatc aagcggaaag gatcgttttt atccttagct
     3841 cttttgatga attcatctac cctatcaaca ctacctattt gctcaagcat tctaataaca
     3901 ccttcattag ctccaccatg tgcatgaccc caaagcgcac caatacctgc tgctatacag
     3961 gcataaggat gagcgtgagt tgaacccaca gcacgaactg ttgaagttga agcattttgc
     4021 tcatgatctg catgaagcat aaaaactgta tcaagtgctt ttacttctat aggtttaagc
     4081 tctacatgat cgtaaggata ggttcttaac atatataaga aattttctgt aaaaccacga
     4141 tctaaatttg gataagccat aggaaagccg tgtttatatc tataagcagt ggccactata
     4201 gtagggattt tagctactat tctagctgcc atttccatat attcttcttt tacattcatg
     4261 tttaaatgat caggataaaa agcactaagc gatgaaacag caccttgtaa aactgccata
     4321 ggatgagcat tatcagggaa agaatcaaaa agacgatgca taccttcatg gataaaagaa
     4381 cgctttttca tttcataacg aaatgcttca agacgcgtag catcaggtaa ttctttataa
     4441 agtaaaagat gaaccacatc taaataaagt ttgttttcag caagccactc tataggatag
     4501 ccacggtgca ttaaaattcc gttttctcca tcaatataag tgatttttga tttacaagta
     4561 gctgtagaag ttaagccctc atcataagaa aacattcctg tttgtttata aaaacttgac
     4621 atatctacaa cgcttggccc agttgtacca tcatatatag gaaattcata gctttttcca
     4681 tttctattat cggttatagt aacggaattt gacattttcg ctccttttat tgttactttt
     4741 attaattcta acaaaaaagg gcgattatga gtttttttat tattaaattt ttaagatttt
     4801 gtttgctttt ttgagtaaaa aagtaacttt cattttttag aattagaaag aaatttgatc
     4861 atactcataa caataatagc ctcaaacaac gctgttaaaa taagtgctga ataaagcttc
     4921 tcatcaataa ccttgcccga ataacccaaa gtagctgttg ctataagcaa ggttaaaggc
     4981 atagaatgac taagaccaaa taaaatcata tttttaaaac caattctttt taaaaaaaca
     5041 cttgcacata aaattcttaa acccaccata acaaacataa gtaaaaatgc ttgtaaaacg
     5101 attttataat ctaaaatcat tttaagatca aaggttgaac ctatatggat aaaaaaaata
     5161 gggatcaaaa acccatgtcc aaaagtagaa agcttatgct caagatcttt tttatgatca
     5221 aaaaaagtag ctataaatga gcctgctata aaagaaccaa gaacgatttc aagttttgta
     5281 ataaccatag caacaatgat cagtataaaa atggccatac aaaatcttat atctttttca
     5341 tttttatctt cccatggcat aagcacaact ttaagctgag gataccacca aaaaagcaca
     5401 ccaagcattt taaatccgag caaacaaagt cccaaaaaga tattaagata taaaatactt
     5461 tgcgctacat caataatacc tgttccttcg cgcaaaaaag ctcccgctat agtcaaaagc
     5521 acaatagaaa tcacctcagc taaagtagcc actatcatag caatatttag ccaataacac
     5581 tcttttccaa aatccttaaa aagcaaagat aaaagcccta cactcatcac aggtataatg
     5641 ataacaaata ctaaagaaag tccaaaaatc catactataa gagaagataa agcgtaaagt
     5701 aaaaaaatat aaaaaaaact ttttttggcg acttctttat ccatattaaa aaaggctctt
     5761 aaatttactt ccatacctgc tataaacatt agataataaa aacctacatt tgctaaaagt
     5821 gcaaaatttt cactttttcc tatgaaacca aaatatgcta ttattgcccc taaaataatt
     5881 tcagtagctg aaagaggcaa gcgtaaaatt tttgcaatat gcggagaaaa aagtaagcat
     5941 aaagctataa caataagaat ttttagatca attaaacctt gtggatcaat gacactctga
     6001 tgcaaaagta aatcccattt cttttaattt tattatatct tgacttggtt cttcaccttt
     6061 agtggttaaa taatccccta taacaatagc cccagcacct gcttgaaaaa tttcatattg
     6121 tctttctcgt aataccactt cacgcccacc tgctaccatt accacgcttt gcggtaaagc
     6181 ctctttggta tcacgaacaa tttttaaggc ttcatcagcg ctaagtcttg gaacttgtag
     6241 ttttaaattt tcatttgcta taaaaaaatt aataggcgtt gaaaaaggtt gtaattcttg
     6301 caaagatttt ctaaaactta gcctatcttc ttcactctca cccataccat agattccacc
     6361 acaacaaagc ataagccctg cttctttagc gtttaaattg gtttgaaatc tactttccca
     6421 agtatgcgtg gtgcaaattt gtggaaaaaa ttccttagaa ctttcaagat tgtgattata
     6481 agaaaaaatt cctgcttttt taagttcttt gagttgttcc acgcttgcca tgccattaca
     6541 ggcaattaaa agcaagttag gcacttcttt ttgcacggcc ttagcagctt cgcaaacata
     6601 ctcaagcttt tcatcatcaa gcccaagtcc tgctgtaacc aaacaaaaac ccaaggcttc
     6661 atttttcttt gccatttttg cttctaaaac gatttgtgaa agttctttac gacgatattt
     6721 ttgaatatct gtttttacat gagcgctttg ggtgcagtat ttacagtctt ctgaacaatt
     6781 tccactcgct atatttgaaa tagcacaaag catgatttgc attctaatcc ttcatttctt
     6841 ttttgatttt acattttaaa cattctaaga atgtaccttt tttaagctct tttatcacta
     6901 aagtttcgcc acactcttcg catttttctt cacttggttt gtatttgctt ataaaattgc
     6961 attttggata agcactacag ccataaaatt taccacgttt tgaaaagcgt tctacgattt
     7021 cacctttttg acaacttgga caagtaatgc ctgtaccatt agctttagct tttgcggctg
     7081 tattttcgct ttcgtttttg ctttcacttt ttaaatttct tgaatacttg cattttggga
     7141 aatttaaaca cgctacaaat tctccaaaac gcccttttct aatagcaagc tctccgccac
     7201 aatcaggaca actttcgcct agttttgtga cagttttttg actagctatt tttgtttttc
     7261 cttcttcgat ttttctcata aaaggatagt aaaattcttt taaagtttct tgccaatctg
     7321 ccttatcttc tgcgatttca tctagggtat tttcaaggtt tgaagtaaat ttactatcta
     7381 ctatatcgct aaaatttttc tcaagcactt cggttacatt aaaagcaaca tcgctaggaa
     7441 tgagttgttt tttatctatt gttacataat cacggcttgt aagtatagaa atggttggtg
     7501 cataagtaga agggcgacct atgcctaaac tttcaagttt ttttacaagt cctgcttctg
     7561 aataccttga aggtggttcg gtaaaatgtg agttcatttc taaattttgc acttttaaat
     7621 tttggcctat tttaaaattt ggcaaaattt tatccttatc catatcacca taaactttat
     7681 aatatccatc aaaaaggatt tttctaccgc ttattttaaa aactactcta tcatttttta
     7741 caaatacatt ttgagtttga gagatagcag gactcatctg acaggctaaa aagcgattgt
     7801 aaataagtgt gtaaagtttt aactcatctt tgtctaaaaa tttagccgca atttctggag
     7861 taaaacttaa atttgtaggg cgtatagctt catgagcttc ttgagcgcct ttagtctttg
     7921 tagtatatac atttgctttg cttggaagat agtccttgcc aaaatttgct tgtatgaatt
     7981 ttcttgcatt ttctactgct tctttggcta aatttaaact atcggttctc atataagtaa
     8041 taacccccat cacgccttca tgggtattta ctccttcata gagcttttga gctatcatca
     8101 tggttttttt agggttaaaa ccaaggcgat tgctggcact ttgttgtaaa gttgaagtca
     8161 taaaaggagg cggcggagcg atttttcttt ctttgctttc aatgtcactt atactataaa
     8221 cttcattttt acaagcttct agtataagtt tagcacgatc tttgttggta atggtaagtt
     8281 tttctatctt ggctttatca aactcaacta gttctgcatc taaatctttt tgaaaaatca
     8341 tatcaatact aaagtattct aggggtacaa aggcacgaat ttctttttca cgatcgacta
     8401 tgatctttaa agccgcactt tgaacacgcc cagcactaag tcctctttga attttttgtc
     8461 ctaataaagg gctgagctta taccctacaa tgcgatctaa aagacgtctg gtttgctgag
     8521 catttacaga gtgcatgttt aattttcttg gattttttaa agcattttct atagcgcttt
     8581 tagtgatttc atgaaaaaca atgcgtggta aggtgttttc atcttttcct atagcttttg
     8641 caatatgata ggctatagcc tctccttctc tatcttcatc cgttgcaaga tagacttctt
     8701 tggcatcttt ggctttgctt ttaagttctt taactaaggc gctatgatca cttgtgattc
     8761 tatactcagg gataaattca tcatcttcta ttttaatccc aaagcttgat ttaggcaaat
     8821 ctctaatatg tcctttagaa gcgataactt cataatcttt tcccaaaaaa tttcctatgg
     8881 ttttagcttt tgcaggagat tctactatga ttaaattttt cttcattttg cacccttgtt
     8941 aaataaaaag ctgaatttag ctaaaaatat ttaaaattct acttataaaa tatattttaa
     9001 tcaagctaaa atattttaaa aacaaaacta tcataacaaa ataaataaaa tataatttta
     9061 agtaatttta aatacaaacc ataatttttg gagtataata aaataaaaaa ggtaaaaatt
     9121 atgaatgaca aaacttataa atttcatcca aatgacacaa aaatggataa aaaaataatt
     9181 caaattactg aaaagtccgg atttaaagca gctgtgtttt ctatggctgc tatgactatg
     9241 ctaggaagtg tggtcatttc atctgctctg cctgctatca acagacattt tgaagaactt
     9301 ttaacccaaa gtggcgctac tcttgcttca agtttcacat tagctcatct tgatatactt
     9361 gttcgcttag ttttaaccat ccctgctatt tttgttgtca ttttatctcc atttgctggt
     9421 attttaatgg ataaatttgg caaattaaaa ttcattcttc cagctatggt ggtttggact
     9481 ctttctggga taagtggctt tttcttaaat gatatttatg ctatactgac ttcaagagct
     9541 atttttggta tggcaactgc ttttataatg acaggcgctt cggctttgct tggggattat
     9601 tatagtcgtg gtggctttaa tcgcagagaa aatgctttaa gtcttcaagg atttttttgt
     9661 gcagtatagg gggtgctgtt tttatttcta ttgcgggatt tgtttcaagt tattcttggc
     9721 gttatccttt tttgatatat ggacttggaa ttttaattac cttaatggct atcatttatc
     9781 tttttgaacc tagaaaattt aaattctata attatacaaa aatagaaaca aaaacaaatt
     9841 attggcaatt tttccctatc tattttatag gtttttttat catggtagtt tattatattt
     9901 cgccaactca acttccttac tatatagaag aacatttggg attggatcct aaatatatag
     9961 gtatttcgat gtctgtatct gcactatgtt atggtttttt ctctctaagc tatagatata
    10021 ttataaaatt cttaagtatt aaaactattt atgttttaac tctttttatc gtatcttgtt
    10081 cttttttgct gcttttttta gtagatagct ttttcacagt tttaatcgcc ttagctttgc
    10141 ttggaatggg tggaggtatt atgcttgtaa ataatacggc ttatcttttt tcaatctgtc
    10201 ctgaaaatgc tcgctctagg gcttatggaa ttttagcaag ttgtatattt ttaggacaat
    10261 ttttaagtcc tattatctct caacctatcg ttagacaaat gggtcttgta gatgcttttt
    10321 taatatggtc aatagtaatt tttatagtgt gcattgtgtt tttattttta aagcaaaaac
    10381 ctagaataaa ttagcaagaa aaatcttgct aattttattt attacaaacc taccgcactt
    10441 aaagtttggt atttactcat ataaatttga gcttcaattt ttctcatcgt atcaagtgct
    10501 acttgaacta caataagtac agaagtgccg ccaaaatgaa aaggcacacc cataaatttc
    10561 accaaaaccc aaggtaaggt tgcaacaagc cctaaataaa tagaacctga taaagttaaa
    10621 cgagaagcca cttcgttaag ataacttgaa gttccttcac ctggacgaat tccagggata
    10681 aaaccgcctt gttttttcaa attttctgct atgtctttag cgttaaatac gatagaagca
    10741 taaaaataag caaagaaaat tacaaacaag aaagttagaa catgaaacaa ataaccattt
    10801 ggatttaaaa agtcattaat ggcttgtaga taaggatttg tactagtttg taaaattgtt
    10861 gttggaaaca tcaaaatcgc actagcaaaa atcggtggaa taaccccact aagattgagt
    10921 ttaataggaa tataattcat aatgcgtttg ttttgatttt gcattacaac tttacgagaa
    10981 taagaaatag gaattcttct ttctccaagt tctatataaa taatcacccc tatggtgatt
    11041 aaaatcaaag caaaaattgc aaaagcggtt aagaaattca tctcgcctga attgatttgt
    11101 cctacagttc ctgaaatcgc tcttggaata cctgaaacaa tacctgcaaa aatgattaaa
    11161 gaaataccat ttcctatacc tctttgtgtg atttgttcgc caagccacat taaaagcata
    11221 gttccagcaa gcatagaaat agcacaaagt gcgataaaca tatttaaatc ttccaccatt
    11281 atagcccctg caccaccacg accgtgcaag ctttgcaaac ctatagcaac gcctatactt
    11341 tgaaccaaag taatcacaat agtcgcataa cggataattt gcatatattt ttgcatacta
    11401 tcacgctctt ttttcatctt accaatattt ggaaaagttg ctgcaagaag ctccataata
    11461 atagaagcag taatataagg cataatacct aaagaaatga tagaaaagcg ttcagccgct
    11521 ccaccactaa aaacattaaa taaacccaaa gcattgtttt gattgttatt aaaaaattcc
    11581 gcaatcacat cagcattgac gccaggaact ggcacataag ccagaaccct ataagcaaat
    11641 aaaaatgcta aggtgattaa aatcttattc gtcaatgctc tattcattat tttgatccgg
    11701 tgacactaat attctcgtct ttgatttttg atactaagtc ttttgcactt gcaccaatta
    11761 atttgatttt attcacagat tttgaaattt tgtgaacact tttaatgctc tcaaatgtaa
    11821 tttcactaag ctcttttaca gctgtgattt tttcaacatt gatcacataa ggtttttgaa
    11881 ttttagaagt aaaacctact tttggtagtc ttctttgaag tggttgttga cccccttcaa
    11941 aacctctttt ttcattataa ccttttctag cagtttgacc tttaccccct ttagtagcag
    12001 tcttacccat gccagaacct tgaccacggc caattctttt agttttatgc gttgaacccg
    12061 ctgcttttgt taaattcatc ttcttatcct tttaacattg ttaaagcttt gattgtagta
    12121 cgaaccacat tagctgaatt atttgaaccc aaagacttgg ttaagatgtc tttaatacct
    12181 gcaagttcca cgatagggcg tgtagaacca cctgcgataa ctcctgtacc ttcgctagct
    12241 ggtttaagta aaattctact tgcgttgtat ttcacctcta catcgtgagc gatagttgag
    12301 cctttagttt taacttcaac gatattttta aacgcatcgt caacagcttt acggatggca
    12361 tctggaactt ccttagcctt accataacca acacctacta aacctttgcg gtttccaacg
    12421 ataactaaag cagtaaatct aaatcttcta ccacctttaa caaccttagt aactctgccg
    12481 atatcgacga ttacttcttc aaattcttct ctattatatt tttccatcga tttacccctt
    12541 atagcctaat gccattttct cttaaagatt cagccaatgc tgcgataaca ccatgatata
    12601 cataaccatt tctatcaaaa acagcttgtt ctatcttttt aacttttaaa gttttagcaa
    12661 attcagcagc gattttttta gcaccttctt tatttgcttt aacgccaagt ttgcgtccat
    12721 caactgctgc taaagttaca gcttttacat catcaatcgc ttggatatat agagttctgt
    12781 ttgatttaaa tacagaaatt cttggaaaat tttcacaacc tgaaattttc gctctaattc
    12841 ttttttttct tttgattctt aaagttagtt ttctttttaa tacatttgct ctcatattct
    12901 acccttactt cttagatgtc ttaccagctt tgcggataat gcgttcatca gaatacttaa
    12961 cgccttttcc tttatatggc tctggcggtc taaattcacg aatttgagca gcaacttgac
    13021 ctacaacttg tttatcactt cctttaactg caatagtatt tttatccact acaatttcaa
    13081 ttccttctgg aatatcataa ttaataggat gagaaaaacc aaggcttagt tctaaaactt
    13141 taccttttaa agctgcctta taaccaactc cattgatttc aagagttttt gaaaaacctt
    13201 gagttaaacc tacaacgata ttgtaagcta aagctctgta agttccccaa taagctctac
    13261 tttgtctgtc ttcacctttt ggagaaaaaa gaatattatt atctttaatc tcaacattta
    13321 catttgcttt agtatcaagt tcttttgcca aatttccttt tttaaattta agcaaatttc
    13381 cttctaattt tacttctact cctgctggaa tagcaatcgg ttgtttacct atacgagaca
    13441 tatttttcct ttttatttgt ctaggatatt tctacttttt taaaagaatg gatacccaat
    13501 gccataaaaa gcagattttt taccaaatgg tacataaaat ttcgccgcca acacctgctt
    13561 tataagcttc atcattagct aaaacaccat gacttgtgct aactacgata gtaccataac
    13621 catttttaaa acgcttgatt tcatctttac ctttataaac acgacgacca ggcttagaaa
    13681 ttcttttaag ctcattgata acactcttac ctttttcatc gtattttaaa actacattga
    13741 taaatttctt tttatcttct tcaataacat taaaactctc aatatagcct ttagcttgaa
    13801 aaattccaac taaagcttct acaactttag aatgtaaaag cttggttgtt tcaagctttc
    13861 tcattcctgc atttctgata cgagtgagtg aatctgaaat aatatcattt atcatatttt
    13921 atccttacca acttgctttc ttaagacctg gaatcaaacc ttcattgccc atttttctta
    13981 agcaaactct gcaaattcca aaatctctat aaaccgaatg cggacgccca caaatttggc
    14041 atcttgtata agctctaacc ttaaatttag gcttgcgtgc cgcttttgca atcattgatt
    14101 ttttagccat cttactttcc ttttgtaaat ggcacaccga taagttctaa taacttttgt
    14161 gcctgtttgt cattttgtgc tgttgtaact atagaaatgt tcataccatg agttcttaaa
    14221 attttatcat actccacttc tgggaacatc aactgctcat caagaccgaa gttatagttt
    14281 ccgcgtccat caaaaccatc tctacttaaa cctctaaagt ctttcaccct tggcaaagca
    14341 atagaaatta atttatcaag aaaagcatac atattttctt ttcttaaagt taccattaca
    14401 cctacaggaa aaccttcgcg aactttaaat cctgcaactg attttttagc tttagtaatc
    14461 acagcctttt gtcctgcaat taaagaaata gtatctgcaa cattttgcaa tactttttga
    14521 tctttagcca actcaccagc acctacgctg ataactactt tttcgatcac agggataagc
    14581 ataggatttt taatatcaaa ttctttaacc aatgcaggtt taatgctttg attatatttt
    14641 tcttttaatc tcatcatcgc ttactcctga acttttgcca cattggaaat atccattggc
    14701 atttctttat tgataaaacc accatttggg tttttctcac tcggcttaat agctttttta
    14761 gcgattttac atccttcaac taccacttta agtgtttttg gatataccgc taaaacttta
    14821 cctgttttac ctttatcatc gcctgtgata accttaacgc tatcaccttt tttgattttt
    14881 aatttaaccg ccattataat acctccggtg ctagtgaaac gattttcata aagccaccat
    14941 atctaacttc tctgcccact ggcccaaaga tacgagttcc gataggctct cttttgttgt
    15001 caagaataac cgcagcattt tcatcaaaac gaatcaaaga accattatct ctatgaattt
    15061 cttttttagt tctaacgata accgctttta ccacttgacc ttttttaact tttccatttg
    15121 gtaaagcttt tttaacagat gcaacgatta catcacctac ggtagcgtat cttcttttgc
    15181 taccccctaa aaccttgata cacattaatt cttttgcacc gctattatca gcaactgcaa
    15241 gtcttgtaaa actttgaatc attactcaac tcctgtagct aatacagatt ttaagcgaaa
    15301 tgattttctt tttgaaagtg gtctgcattc tactgcaaca acagtatcac ccactttaac
    15361 ttcatttctc tcatcatgaa ttagatattt tttaaagcgt ttaacaattt ttctatatct
    15421 tggatgaacc acttttcttt caaccaaaac acttgcggtt ttttcaccag cgattttaac
    15481 aacaacgcct tgaatttctc ttttaaatgc cattttctat ccttatctta aagcgttaat
    15541 tgctgtattt attctagcaa tgtctttttt tacttggcta atctcttttg gattagtaag
    15601 ttgcattgtt tttagctttt gttttaaagt gaataaaagc accttttttt cttttagcat
    15661 tgttgcaagc tcagctgctg ttttatcttt aatctcagta tatttcattt tggctctctc
    15721 ttgtaacaaa cttagtttta aatggaagtt tatgcatagc taaagtcaat gcttctcttg
    15781 ccatttcttc gcttactcct gccatttcat aaatgatacg acctggcttg atattcatta
    15841 cccattcctc aacagcacct ttacctttac ccatacgagt ttctaaaggt ttttttgtca
    15901 aaggcttatc tggaaaaact ctaatccaag tttttccttg tcttttaaca aaacgagtta
    15961 aagcgatacg cgctgcttcg atttggcgtg agttaatgcg tcctgcttca gttgctttta
    16021 atgcaaattc accaaaagta aattctgttc cacgattagc ataacctctg ttacgccctt
    16081 tcatcatttt gcgatattta gttctttttg gcattaacat gattatttac cccttcttgt
    16141 gcgtcttggc tttttagctg gagcactttc ttcagttttt tcaggttgca tacctttgtg
    16201 caatacttca cctttaaaga tccatacttt aactcctatg tttccataag tagttctagc
    16261 ttctgcaaaa ccataatcga tttttgctct taaagtatga agtggaacgc gtccttcaag
    16321 ataccattct gttcttgcca tttcagcacc gcctaaacga ccggaaactg aaactttaat
    16381 tcctttagca cctgcttttt gcgcaccttg gattactttt ttcattgctc ttctaaaagc
    16441 aattcttttt tcaagttgag ttgcaacact ttcagcagca agttgagctg aagctcctgc
    16501 ttttctttct tctttgatat tgatatttac atctttaccg attaaatctt gcaattcttt
    16561 tcttaaatta tcaacatcac tacctttttt accgatgatg atacctggtc ttgcagcaac
    16621 tacagtaacg cgaagttttt tagcagttct ttctactaaa atttggctaa ttcctgcgta
    16681 ataaagtttt ctttttaaga aagctctgat tttgtaatct tcaccgatat tttctactaa
    16741 atttgcttta gttggaaacc atcttgattc ccagtttcta ttgattccta gtcttagacc
    16801 aattggatta actttttgtc ccattagctt tcctttttca ctgttgcttt tttagtgctt
    16861 gttgtttttt tagctggagc ttttgttgta gtagtttttt tagctactgt ttttttctct
    16921 tcagatttca cttccgcttt tgccacttct actaaaatat gtgaagttgg ttttctaata
    16981 cgacttgcac ttcctctagc tcttggtcta aatcttttta ataccgcagc tgcgtcaaca
    17041 cgacaacttt ttacaatcac ttcgtttgct tcaaagccac catttgctac tgcgcttgaa
    17101 attgcgtttg caatgtattt tgcaccttta tttggcataa attttaaact agccatagct
    17161 aattctgcat tcatcccctg aacttctcta gcaatcaatc ttgctttagt tggagataat
    17221 cttatgaatt taattaatgc tttactcata tcttatccct tacttaccaa ttttcttttg
    17281 cacagagcct ttatgccctt taaatgtgcg tgttggagca aattcaccaa gtttataacc
    17341 gatgtgattt tcagtaatat aaaccggaat gaagcttttg ccattatgaa cattaaatgt
    17401 aagtcctatc atatcaggag taattgtgct tcttcttgac caagttttaa ttggtttatt
    17461 atcattagcc tttttagcag cgatgacttt tttcattaca tgatcatcaa caaaaggacc
    17521 tttttttagt gatctagcca tcttactttc cttttcttct tgaaattatt agcttatcgc
    17581 tagccttttt acgacgagtt ttcgcacctt tggttggttt accccacgga gttactggat
    17641 gacggcctga atttttctta ccttcacccc caccgtgcgg gtgatctact gggttcattg
    17701 cagaaccacg agtttgcggg cggatacctc tatggcgatt tctacctgct ttaccgatag
    17761 ttacattagc ccattcttca tttccaactt cgccgatact tgccatacat tcagctaaaa
    17821 cttgtctcat ttcgccactt gcaagtctta aaataacata tttttcttct ttacccataa
    17881 gttgtgcata agcacccgca gaacgaatca tttgaccgcc tttacctggt tttaactcaa
    17941 cattatgaac aatagtaccc acaggaatgt ttttaagttt cattgcatta cctggtttaa
    18001 tatcaagtcc gctttcagca gctgcaacga tatcaccaac gcttaatcca cgtggttgaa
    18061 gaatatatct tttttcccca tctttataag caatcaaagc aattctacaa tttctgtatg
    18121 gatcatactc gattgcttct actttgcctt ctataccgaa tttacgacgt ttaaaatcaa
    18181 taattctgta aagtttttta gcacccgctt ctttatgacg acttgtaatt cttccatagc
    18241 tgttacgacc cgcgtgtgct ggaagtttaa caagtagtga gcgtacactt ggtttagctg
    18301 taatatcttc agaacttaaa cctgtgatat atcttctact tggagtatat ggtttataag
    18361 ttttaattgc catcttaagc ctccgtattt tctaagctaa caccttcagg tagcttaaca
    18421 tagaattttt tgtaattgtt tctttgacct aaacgacctc taaaacgctt aatttttcca
    18481 tccattctta aggaattgat gctttttgga gttacaccaa aatactcttt taaaaccgct
    18541 tttaagcctg ttttagtcat ttttggcgaa gtttgaataa ctacgacacc ttgctcttgc
    18601 aaattcaaac ttttttctgt gtaaagtata gtctttatat cagtaatatc tgccataatt
    18661 atccctcttt tgtaatagat tctaacactg atttttccat aataacagca ttaaatacag
    18721 atactaaata agcatttact tcagttacat caactacata gcaatttgct aaatttctgt
    18781 aagctaaaag tgttttttca tctagtaaat ctttaacgat taaagcatct ttgacgccaa
    18841 gttttttaat cacagcgttt gcatcttttg ttttaccact ttcaatagcc aaagaatcag
    18901 cagtaaataa cacaccttta gctgctttat ctgctaaagc tctttcaagc gccaatcttt
    18961 tttgtttttt atttactttt tggaagtagt ttctttcatt tgttggacca aaagcaaccg
    19021 caccgcctac ccaaacgtta gttcttgttg aacccgctct agcaccgcca cgaccttttt
    19081 gtctccaagg ttttttacca ccaccactta catcacttct acctttagta tgagctgtat
    19141 ttgctcttaa acttgcaagg taagatttta catacaagta aagattgtgt ggatttactt
    19201 ccgcatattt tgaaggtaaa tcaagttcac ctgctttttc taatttatca tttaaaacaa
    19261 ctactttact cattttgcaa tccttatttt acccatggca ccattataac ctggtactgc
    19321 acctttaact actaaaattt tattttcagc atcataagat acaacttcgt ttttaatggt
    19381 cactttagta tttccatagt gtcctgccat tttcatacct ggttgaacac gacctggcca
    19441 ttctctatta ccaatagatc catggcgtct atgaaatctc gaaccgtgac ttgctggacc
    19501 ccctgcgaag ttatgtcttt tcataacacc gctataacct ctacctttag tgttaaagct
    19561 tacttttaaa atttttgctt catttaatgg agtttcatct aaatctcctg cttcagtatt
    19621 tgctacttct aaagtcgcaa atctattgta ttctgcagaa agattgtatt ttttttgttg
    19681 tcctgcgaca catttattac ttgctttacc ttttggatat gctactaaag cctttccgcc
    19741 ttcaacttca catacttttg catttacaac tcttagtaaa gttacagcga tacttggatt
    19801 agtaattgtt ctgctcattc caattttttc tacaatatat tccatatctt atccttactt
    19861 acccatagct cttacttcaa cgcttacttc tggcgctaaa tcaagcttcg ttaaagaatc
    19921 aactgtatct ggagtcgctg ctactatatc tagcatacgc gcgtgaattc ttatttcaaa
    19981 ctgctcacga gaatctttgt taatgtgtgg agattttaaa actgtatagc gtttgatttt
    20041 agtaggcatt ggtatcggac ctctaatatc cgcacctgtt cttttaacag cttctacgat
    20101 tgctgcaact gttctgtcta gtactcgatg gtcataagct tttagcttaa gcctaattct
    20161 ttccataata tttcctttaa aaagaactcg ttagttaaaa actaaccaaa tttataaaaa
    20221 ttgaaatgag agtatataaa atcttgtttt caaagtcaag gaatttgatg aaatttttct
    20281 attattttcc ttttaaaaag
//
LOCUS       DAPIWQ010000013        20120 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.013, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000013 DAPIWQ010000000
VERSION     DAPIWQ010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20120)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20120)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20120
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.013"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..327)
                     /locus_tag="RJ267_000358"
     CDS             complement(<1..327)
                     /locus_tag="RJ267_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388242.1"
                     /translation="MLGIYLLIAALSFLALYFAVKKLTLNIDERTLLEPIKMDIYPKF
                     CDLIDEKIREFKENIQNANLTLKNSNQKDEFLEKLGDLSRELTFIQTMNLSNKNDSIW
                     QNELFSF"
     gene            complement(327..644)
                     /locus_tag="RJ267_000359"
     CDS             complement(327..644)
                     /locus_tag="RJ267_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDV7388243.1"
                     /translation="MIENISASLWTKQDLNAYQIFDVRTPLEWEEGILPNAQCVALYD
                     NQGLLNAKFLDEFQSKRDESKKLAFICRSGHRSMVAAEFIAEKLGLESINLDGGMLAL
                     KGC"
     gene            complement(641..2467)
                     /gene="htpG"
                     /locus_tag="RJ267_000360"
     CDS             complement(641..2467)
                     /gene="htpG"
                     /locus_tag="RJ267_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HDV7388244.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLS
                     VSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANGYEIDDANK
                     EEQGTSITLYLKDDEFANAYKIESIIEKYSNHIQFPIFMEKEEFTPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKAEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLFRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGIKEASVKKILGELEKLKNNDKEKYLSFFKTFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEV
                     LLMDDEIDSLVTPMLEFEGLKFVSINQVEDKNELSDEEKNTFAPLVAKFKELLKDQVE
                     DVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKNN
                     ESFSADIATLVLNMAKLSEGMGVDNPAEFNASLTKIINKAFS"
     gene            complement(2539..2907)
                     /gene="crcB"
                     /locus_tag="RJ267_000361"
     CDS             complement(2539..2907)
                     /gene="crcB"
                     /locus_tag="RJ267_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HDV7388245.1"
                     /translation="MLNTLLVVGFGGFIGAILRMLSINLVNKFFPYSISFGTLFVNVL
                     GSFIIGLLFSYAQNKGLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYLHFALN
                     IILNVFLCLFAAWLGFLIFK"
     gene            complement(2901..3593)
                     /locus_tag="RJ267_000362"
     CDS             complement(2901..3593)
                     /locus_tag="RJ267_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HDV7388246.1"
                     /translation="MIYKKIKALYFWIFFVLSVALVIFCFCFTKSQNTLWKIRKIWAK
                     FQRYTISYKQEIIGTFNPQAQMILMNHQSALDIIALEELYPKNLCWIAKKELGEIPIF
                     KVAMKKPKLLCIDRKNPRDLVRVLKEAKERISEDRVLAIFPEGTRSKNEKMLKFQSGA
                     KILSEKLNLKVQPILIVDSAKILDTKSFSASSGVLKIICMDLVDTNDEKWLENTRKKM
                     QELLDQERAKLC"
     gene            complement(3574..4770)
                     /locus_tag="RJ267_000363"
     CDS             complement(3574..4770)
                     /locus_tag="RJ267_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HDV7388247.1"
                     /translation="MKILLTLIFSIVVLFGRGEISVFSGQDENMQKELQKLPQEEQKI
                     YQNIPPSDENNDFESNVDDPFVAKGSLVLTNDEYPSRVYVGEVFPITIYARTTENIKF
                     DFNISVEKTNLSFLNPDAKWEFINNEYKTTLWFEAKNSNASLSKISIKLLRNNEAFQE
                     ADINLNPIKFENTLFNKDFSHLVASSLEIKKVKASYFDDANIIMMIELNATNTNLKSF
                     FIEGIQKQGIENLKGDFNASSAFYYAILPLSKTNFEFSYFNKDSKKLENINLKLKISD
                     DEISTQSDLNPVNKDLNIYKQYALWFLAVLFGVLFVWRKNYIILALAVVCFALSFLVD
                     TNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVLGKRQNYIKVLFSDGKIGWVNK
                     DDLQKN"
     gene            complement(4742..5413)
                     /gene="purQ"
                     /locus_tag="RJ267_000364"
     CDS             complement(4742..5413)
                     /gene="purQ"
                     /locus_tag="RJ267_000364"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HDV7388248.1"
                     /translation="MKVAIIRFPGTNCEFDTTYAFEKLGVKTQIVWHEEKEFDADLVV
                     LPGGFSYGDYLRCAAIAKLAPAMQGVFNHAKKGGYILGICNGFQILLESGLLKGAMKH
                     NNNLSFISKNQSLRVVSNDNAFLKNFKKDEIINLPIAHGEGNYYADETTLKELQDKDL
                     IILKYEPNPNGSVFDIAGICDENKKIFGLMPHPERACEKVLGNDVGLKMLKGFLLENF
                     INFNF"
     gene            complement(5415..5660)
                     /gene="purS"
                     /locus_tag="RJ267_000365"
     CDS             complement(5415..5660)
                     /gene="purS"
                     /locus_tag="RJ267_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HDV7388249.1"
                     /translation="MEVIVNISLKNGVLDPQGKAVEKALHSLNFNSVKEVKIAKQIKI
                     SLDEKDEKLAKEQVKKMCEELLVNSVIEDYELIIEKE"
     gene            complement(5669..6379)
                     /locus_tag="RJ267_000366"
     CDS             complement(5669..6379)
                     /locus_tag="RJ267_000366"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HDV7388250.1"
                     /translation="MTKKEMLYEGKGKKLFKTDDENLLISEFKDDLTAFNAEKRGNES
                     GKGALNCKISTEIFHLLEKNGIKTHLVEIISDTEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKDDALGDPFINDEHCLILNLVQNEAQISEIKNMARKIN
                     SILTPFFDNKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            complement(6381..7715)
                     /locus_tag="RJ267_000367"
     CDS             complement(6381..7715)
                     /locus_tag="RJ267_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HDV7388251.1"
                     /translation="MMELILKTKRFFAGLAGFATTFILCLFLTSHLQAKVDQKEEQVQ
                     KRLEALDKLTKTLAIVEQYYVDDQNISDLVDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTNGEFGGLGITVGMKDGALTVVSPIEGTPADKAGIKSGDIILKINDEATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGATKPFDVTLTREIIKIESVYAKMIENENILYLRVANFD
                     KNVVDVASKELKKYPNVKGVILDLRNNPGGLLNQAIGLVNLFVDKGVIVSQKGRIASE
                     NQEYKADPKNKISNASLVVLVNGGSASASEIVSGALQDLKRGVIVGENTFGKGSVQQI
                     IPINKTEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFSIKESDLKQHL
                     ESELEKIDKNKKEDKQENKDNKNLISQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            7833..8123
                     /locus_tag="RJ267_000368"
     CDS             7833..8123
                     /locus_tag="RJ267_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HDV7388252.1"
                     /translation="MCQEKHTHTHSQKHLKAVCNRLSRTIGHLSAIKRMVENDKDCSE
                     ILIQLAAVKAEVNNTAKVVLKEHLAHCMVHAVEENDIQSIEELNKAIDMFMK"
     gene            8235..10808
                     /locus_tag="RJ267_000369"
     CDS             8235..10808
                     /locus_tag="RJ267_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7388253.1"
                     /translation="MANIQDFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALSVDS
                     TSILNQILNKLNISKEALELEIKSRISKLATSSNVNRENIRFSNELINSLENAKGLMS
                     ANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKMDSKTSDETLD
                     SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKARGEFQKAAELEYGKIPS
                     LEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASNAIMNLSGKEQEDAV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKK
                     A"
     gene            complement(10836..12767)
                     /locus_tag="RJ267_000370"
     CDS             complement(10836..12767)
                     /locus_tag="RJ267_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HDV7388254.1"
                     /translation="MKILKYIFSFFTLLFITGFIYVAYLFTSADTEGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYAPYEELPPRLIEALVAIEDTSFFEHNGVNIDAIFRAA
                     VKIIKSGGKTMEGASTLTQQFIKNTELTPERTIARKIREALLAYKMETILTKEQILER
                     YLNFIFFGHGYYGVKTAALGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIS
                     RANNVISRMYNLGWISKADYDTAIKEIPQVYDDTLTQNAAPYVVDEVIKQLSPNIKDL
                     KTGGYKIILNIDLDVQNMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSMRQPGSSFKPFVYQVAINLGYSPMSEIADISRIFEGGAGN
                     NEDWKPKNEGGKFLGLITLKEALTRSRNLATINLALDMGLDVLYSKLMEFGFKDIPPN
                     LSIVLGSFGISPLEYSKFYTMFGNYGTIKDPQIIRQVQDKTGKTIMEFNSNERKVSDE
                     AQSFLVLDMMRNVVEKGTGRNARVKDIEIAGKTGTTNKSVDAWFCGLTPEIEAIIWYG
                     NDNNKPMRYTEGGARTAAPVFREFLTQYIEKFPDTTRKFSIPNGVYRGNYKGESAYYT
                     TKSPLPKANMKFNESEIIF"
     gene            complement(12764..13315)
                     /gene="maf"
                     /locus_tag="RJ267_000371"
     CDS             complement(12764..13315)
                     /gene="maf"
                     /locus_tag="RJ267_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HDV7388255.1"
                     /translation="MLILASSSISRANLLKTAKIDFRQVSFDYDENLNKNISPFLYVQ
                     KIVLEKERQFLSTLGKDFQNQNLLFADSIVCIDEKILTKAKDKKEAYEMLALQNGKYA
                     SILSAFLLVKPEKRVFSLSKTTLYFKNFDENALRDYVENDLYKGKAGCIMCEGFHQNF
                     ITQQVGNLSTALGLDIQTLKAYL"
     gene            complement(13315..15843)
                     /gene="alaS"
                     /locus_tag="RJ267_000372"
     CDS             complement(13315..15843)
                     /gene="alaS"
                     /locus_tag="RJ267_000372"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HDV7388256.1"
                     /translation="MDIRKAYLDFFASKGHEITPSSPLVPDDATLLFTNAGMVPFKSI
                     FTGEIPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEVLKLPKDRLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGQEHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRS
                     SVFLLAQGVSFDKEGRGYVLRRILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTY
                     LNEKKDFIKEQIRLEEERFLSTIENGIEIFNEELKNTKEIFSGEVAFKLYDTYGFPLD
                     LTADMLREKNLKVDEEKFELFMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFV
                     GYEKAECESKILALLDEDFKEVSTLKDAGWVMLENTPFYATSGGQSADSGFIAKREVL
                     DTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGSH
                     VSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSKAALEFVKNQLEELSKVKDELKNNDILSGIKKLKNEILSLKNELKNSSKTELDSKN
                     IQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEKITLAAGVKDVPLKAGAL
                     VKEAAQILGGNGGGRDDFATAGGKDLSKINEALKQSLETIEKAL"
     gene            15958..17031
                     /locus_tag="RJ267_000373"
     CDS             15958..17031
                     /locus_tag="RJ267_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HDV7388257.1"
                     /translation="MNFINLQAQYLAYKDEINAEIESVLSSSSFIGGAKLNEFEQNLA
                     HFLGVKHAIGCSSGTSALYLALRVLDIGKDDEVIVPSFTFIATAEVVALVGAKPVFAD
                     INLSNYNLDFKAVQKAITSKTKAVIAVSMFGQMSDLRALEEILKDKNITLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCHDDEIAKKIRILLNHGQTQRY
                     KHEFIGINGRLDTLQAAILNVKLKYLEKELDKRQKLAQIYNANLKNCQIPQINPNAFS
                     AYAQYSVLVEDRASVLRKFEKANIPYAIHYPTPLHKQPCFSEFSNLELKNSEYASEHI
                     LSLPFSPFLSEEEQEQVICIFKD"
     gene            17036..17902
                     /locus_tag="RJ267_000374"
     CDS             17036..17902
                     /locus_tag="RJ267_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDV7388258.1"
                     /translation="MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDD
                     IFYDDLDKFLNQNNDIIIIATPTNSHLTIAKKVFKQCKCVLIEKPLALNLKEIDEISN
                     LAKEYSIKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLA
                     VHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCGLEKCIASIHQSWNSTQKLR
                     KIHLITKNHFYEANLNDFSLLKDGNFIELTQQSPLFSEHEALLKLIDNQPNHLASTSD
                     AYKVQEILERFA"
     gene            17899..18810
                     /locus_tag="RJ267_000375"
     CDS             17899..18810
                     /locus_tag="RJ267_000375"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HDV7388259.1"
                     /translation="MKLVLFLNMGGATNLQDCEVFLKNMFNDPYILGIKNRFLRKFVA
                     WIITKARVKAMQENYKKMGGKSPLNELTQSLCDKLNLKQDEFKFDFVNLYVPPFATEI
                     LQKYTLNASDEIILFPLYPHHSCTTVTSSLEVLQNEISKQKIQAKVKTIDIFYKNELY
                     NEMIVSHILAKKSKFDAKILIFSAHSLPQSIIDKGDLYEKHVNDHVEILKEKLKDHFD
                     EFILAYQSKLGPVKWLEPNTSDVLANLNDKALIYPISFCIDCSETIFELGMEYKHLSK
                     YNYDLISCPNDSDEFMEFILKYLSDLN"
     gene            complement(18872..20094)
                     /locus_tag="RJ267_000376"
                     /pseudo
     CDS             complement(18872..20094)
                     /locus_tag="RJ267_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882411.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
BASE COUNT         6939 a         3423 c         2796 g         6962 t
ORIGIN      
        1 aaaagaaaaa agttcatttt gccagatact atcgttttta ttgctcaaat tcatggtttg
       61 tatgaaagtc aactctctgc ttaaatcccc aagtttttct aaaaattcat ctttttgatt
      121 agaatttttt aatgttaaat tagcattttg gatattttct ttaaattctc tgattttttc
      181 atcgattaaa tcacaaaatt ttggataaat atccatttta ataggctcta aaagggttcg
      241 ctcatctata tttaaagtaa gctttttaac agcaaaataa agagctaaaa aagacaaagc
      301 tgctatgagt aaataaattc ctagcattaa caacccttaa gggctagcat tccgccatct
      361 aaattgatgc tttcaagtcc caatttttca gctataaatt cagctgcaac catgcttcta
      421 tggccactac gacaaataaa agcaagtttt ttactttcat ctcttttgct ttgaaattca
      481 tctaaaaatt tagcatttaa aagcccttga ttatcatata aagccacaca ttgcgcatta
      541 ggtaaaatac cttcttccca ttctaaagga gtacgcacat caaaaatttg atatgcgttt
      601 aaatcttgct ttgtccaaag acttgcagag atattttcta tcatgaaaaa gccttgttga
      661 tgatttttgt aaggcttgca ttaaattcag caggattatc cactcccata ccttcgctta
      721 attttgccat atttaaaact aaggttgcta tatctgcact aaagctttcg ttgtttttaa
      781 gacctgtaaa aatagcgtgt tttggattga tttctaaaat aggtttgaaa ttttgttctt
      841 gacccatttg ttttaagagt tgttgcatag caaaatcagg tttattttta tcataaacta
      901 tacaacttgg actatctttc aaacgactgg ttagtcttac atcttcaact tgatctttta
      961 gaagttcttt aaatttagct acaagtggag caaaagtatt tttttcttcg tcgcttagtt
     1021 catttttatc ttctacttga ttaatggata caaattttaa accttcaaat tctagcatag
     1081 gagttactaa agaatcaatc tcatcgtcca tgagtaaaac ttctatattt ttttgtttat
     1141 actcttcaag taaaggggag gttcttaata aactttcatt atttcctgct atataaaaaa
     1201 tttccttttg ttcgccttga aggtcatttt tatactcctc taaagagcgt aaattttcac
     1261 ctttagtgct tttataaagc atgagtttta aaagactatc tttttctccg ccaaaaccat
     1321 aaagtccttc ttttaatacc ttaccaaagg ttttaaagaa agataagtat ttttctttat
     1381 cattgttttt gagtttttca agttcaccta aaatcttttt aacgctagct tctttgatac
     1441 cttttaaaat ttgattttct tgtaaaattt cacgacttac attaagtggt aaatcttcta
     1501 catcgataat cccccgcaca aaacgcaaat aagttggtaa aagttcttta tcgtcatcgc
     1561 tgataaatac gcgttttaca taaagtttta agccactttg ataatccaca cggaataaat
     1621 caaaaggtgc attttgtggt atgaaaaata aagaattgta ttctaatttt ccttcacttt
     1681 tagtgtgaag ataaagtaaa ggtttgtttg aatcatgaaa attttgctca taaaatcttt
     1741 cataatcttc tgctttaagg cttgattttt gcattctcca taaagcattg gctttattga
     1801 tttgagaaat tttaagttca gttttccctt cttcttcgcc ttctttagca ggagtaaatt
     1861 cttctttttc catgaaaatt ggaaattgaa tgtgattaga gtatttttct ataatgcttt
     1921 cgattttata agcattagca aactcatcat cttttaaata taaagtaatg cttgttcctt
     1981 gttcttcttt gtttgcgtca tcaatctcat aaccatttgc atcagaactc caaagataag
     2041 ctttatcatc taaagctttt ttacttaaaa cttcgatttt actagccacc ataaaagcag
     2101 aataaaaacc tactccaaat tgtcctatga gttgagaatc ttttttagca tcaccgctta
     2161 aattttctaa aaagctttta gtaccgcttt ttgctatggt tccaaggttg ttgataagat
     2221 catctttatc catacctatg ccattatcac taatacttaa agttttttta tctttatcaa
     2281 ttttgatttc aattttaggt tcgaatttta agcttttata tttatcatca cttacgctta
     2341 aaaaattaag cttatctaaa gcatcgcttg cgtttgaaat aagttctctt aaaaaaattt
     2401 ctttattaga atataaagag tgtatcataa gctgtaaaag ctgattaact tcggtttgaa
     2461 attgcatttt gattcctttg taatttttta aagtggtatt ttagcaaaaa atacaaattc
     2521 taaagtaaat ttaaagattt atttgaaaat taaaaagcca agccatgcgg caaataagca
     2581 aagaaagaca tttaagataa tatttaacgc aaaatgaaga taatttccac tttgcaaaag
     2641 aagtaaattt tgataagaaa aagtagaaaa agttgtaaaa gctcctaaaa aacctgtact
     2701 tataaagctt ttaagtaaag gagataaacc tttattttgt gcataagaaa acaaaagtcc
     2761 tatgataaaa gaacccaaaa catttacaaa aagagttcca aagctgatag aataaggaaa
     2821 aaatttattc actaaattta tagaaagcat tcttaatatt gctcctataa atcccccaaa
     2881 accaactact aaaagagtgt ttaacaaagc ttagctcttt cttgatcgag taattcttgc
     2941 attttttttc tggtgttttc aagccatttt tcatcatttg tatcgactaa atccatacaa
     3001 atgattttaa gtactccgct gcttgcacta aaactttttg tgtctaaaat ttttgcagaa
     3061 tccacaatta aaataggttg aactttaaga tttaattttt cacttaaaat ttttgctcca
     3121 ctttgaaatt taagcatttt ttcattttta gatctagttc cttctggaaa aatagccaaa
     3181 accctatctt cactaattct ttcttttgct tcttttaaaa ctcgcaccaa atcacgcgga
     3241 ttttttctat ctatacaaag aagttttggt tttttcatag caactttgaa aataggaatt
     3301 tctcctaatt cttttttggc aatccagcat aaatttttag gatataattc ttctaaagcg
     3361 atgatatcta aagcactttg atgattcatt aaaatcatct gagcttgtgg attaaaagta
     3421 ccaatgattt cttgtttata agagatagta tatctttgaa atttagccca aattttgcga
     3481 attttccaaa gtgtgttttg agattttgta aagcaaaaac aaaaaatcac caaagcaaca
     3541 cttaaaacaa aaaaaatcca aaaataaaga gctttaattt ttttgtaaat catctttatt
     3601 aacccaacct atttttccat cagaaaacaa tactttaata taattttgtc ttttgcccaa
     3661 aacttctact ttttcatctg catttgccgt ataaaaataa gttgaaggct ctgtaggtaa
     3721 aattttagcc ctagaaccag ccttgataat tgcattttga gtattggtat ctacaagaaa
     3781 actaagtgca aaacaaacaa ctgccaaagc cagaataatg taattttttc tccatacaaa
     3841 taaaactcca aataaaaccg ctaaaaacca caaagcatat tgtttataaa tatttaagtc
     3901 tttatttaca ggatttaaat cactctgagt actaatctca tcgtcactaa tttttaattt
     3961 taaatttata ttttcaagct ttttactgtc cttattgaaa tacgaaaatt caaaatttgt
     4021 tttacttaat ggcaaaatag cataataaaa agcgctagaa gcattaaaat ccccttttaa
     4081 attttcaata ccttgctttt gaattccttc tataaaaaag cttttaagat ttgtattggt
     4141 tgcgtttagt tctatcatca taatgatatt agcatcatca aaataactcg ctttaacttt
     4201 tttaatttcc aaagaacttg ccacaaggtg tgaaaaatct ttattgaata aagtattttc
     4261 aaatttgata ggattaagat tgatatcagc ctcttgaaaa gcttcattat ttctaagaag
     4321 tttgatagaa attttactca aactagcatt tgaatttttg gcttcaaacc ataaagttgt
     4381 tttatattca ttgttgataa attcccattt tgcatctgga ttcaaaaaag ataagttagt
     4441 tttttctacg cttatgttaa aatcaaattt tatattttcc gtagtgcgag catagatcgt
     4501 aataggaaaa acttctccaa catatactct acttggatat tcatcatttg taagaaccaa
     4561 actccctttg gctacaaaag gatcatctac attgctttca aagtcattgt tttcatcact
     4621 tggcggaata ttttgataaa ttttttgttc ttcttggggt aatttttgta attctttttg
     4681 catattttca tcttggccgc taaatacaga aatttcaccc ctgccaaaca atacaacaat
     4741 gctaaaaatt aaagttaata aaattttcaa gtaaaaagcc tttaagcatt tttaaaccta
     4801 catcattacc tagaactttt tcacaagcac gctcaggatg gggcatgagt ccaaagattt
     4861 ttttgttttc atcacaaatt cctgcgatat caaatacaga accatttgga tttggctcgt
     4921 attttagaat aataagatct ttatcttgca attcttttaa agtagtctca tcagcgtaat
     4981 aatttccctc tccatgggca attggtaaat taataatttc atcttttttg aaatttttca
     5041 aaaaggcatt atcattagaa accactctta aactttggtt ttttgagata aagctaagat
     5101 tgttgttatg cttcattgca ccttttaaaa gaccgctttc aagtaaaatt tgaaaaccat
     5161 tacaaatacc taagatatat cctccttttt ttgcatgatt aaaaacacct tgcatagcag
     5221 gagcaagttt tgcaatagct gcgcatctta gataatctcc ataagaaaat cctcctggta
     5281 aaacaactaa atctgcatca aattcttttt cttcatgcca aacaatctgc gtctttactc
     5341 caagtttttc aaaggcataa gttgtatcaa attcacaatt tgtccctgga aatctaataa
     5401 tagcaacttt cattttattc tttctcaatt ataagctcat aatcttcaat gacgctattt
     5461 accaacaact cttcacacat tttttttact tgttctttgg ctaatttttc atctttctca
     5521 tcaagagaaa ttttgatttg ttttgctatt tttacttctt taacactatt aaaatttaaa
     5581 gaatgcaaag ctttttccac cgctttgcct tgtggatcta aaaccccatt ttttaaagaa
     5641 atatttacaa taacttccat atttttcctt aatttaatat tctttttaaa acttcttcat
     5701 aagccatttt tacattacct agatcttgac gaaatctatc tttatctaat ttttcattac
     5761 taaatttatc ccagaatcta caactatcag ggcttatttc atcagctaaa acaagctcat
     5821 tatctttagt taaacccagt tcgattttaa agtcaatcaa ccttaaattc ttattgtcaa
     5881 aaaatggagt taaaatagag ttgattttcc tagccatatt tttaatttca ctaatttgag
     5941 cttcattttg cactaaattt aaaatcaaac aatgctcatc attgataaaa ggatcgccta
     6001 aggcatcatc tttaagacaa aattccacca aagcaaaagg tagcacagtg ccatctttaa
     6061 tgcccagtct ttttgtaaga gaacctgttg caacattgcg tactataact tcaataggaa
     6121 caattttaca ttttttaacc acttgttctg tatcgcttat aatttctacc aaatgggttt
     6181 taatcccatt tttttcaagc aaatgaaaaa tttcagtact gattttacag tttaatgcac
     6241 cttttccact ttcattgcct cttttttctg cattaaaagc agttaaatca tctttaaact
     6301 cactaattag taaattttca tcatcagttt tgaaaagttt tttacctttt ccttcataaa
     6361 gcatttcttt ttttgtcatt ttattgtcct tgtttgatat ttaaaatttt aatagtatca
     6421 atagctgatt ttaactgtgc gtcatcattg atttgttttt gactgattag atttttattg
     6481 tctttatttt cttgtttatc ttctttttta tttttatcta ttttttcaag ctcactttct
     6541 aaatgttgtt ttaagtcgct ttcttttata gaaaaaccat cttcttgagt atttacttta
     6601 cctggaaaaa cttcaatatc aggttttaca cccactgctt gaatagtacg cccgcttgga
     6661 agataatatc ttgcaatagt aagccttaaa gcttcagttt tattaatagg tatgatttgc
     6721 tgaacactac cttttccaaa agtattttca cccacaataa caccgcgttt aagatcttgt
     6781 aaagctccgc ttacgatttc acttgcacta gcacttccac catttacaag cacaaccaaa
     6841 gaagcattag aaattttgtt tttaggatcg gctttatatt cttgattttc acttgcgatg
     6901 cgtccttttt gagaaacaat aacaccttta tctacaaata aatttacaag tcctatggct
     6961 tgatttaaaa gtccaccagg attatttcta agatctaaaa taactccttt aacattagga
     7021 tattttttaa gttctttact tgccacatct acaacatttt tatcaaaatt tgcaacccta
     7081 agataaagaa tgttttcatt ttctatcatt tttgcataaa cactttctat cttaataatt
     7141 tctcttgtaa gtgtaacatc aaaaggtttt gttgcacctt ttctaaaaat agttaaagtg
     7201 atttgagttt ttggcttacc acgcatttta tctacagcat cattgagatt aattcctaaa
     7261 gtggcctcat cattaatttt taaaataata tctcctgatt ttatccctgc tttatctgct
     7321 ggtgttcctt ctataggaga aacaactgtt aaagcaccat ctttcatacc tacggttata
     7381 ccaaggccac caaattcgcc attggtttga attttcatat cattaaaatc tttttcattt
     7441 aaaaaagaag aatgcgcatc aagattgctt aaaagtcctg ataaagattt atccaccaaa
     7501 tcgctgatat tttgatcatc cacatagtat tgctctacta tggcaagagt ttttgtaagc
     7561 ttatctaaag cttctaggcg tttttgaacc tgctcttctt tttgatcaac tttagcttgt
     7621 aaatgacttg ttaaaaatag acataaaatg aaagtagtgg caaagcctgc aagacccgca
     7681 aaaaatcgtt ttgttttcaa aataagctcc atcattgagt tttagtttaa agagtaaatt
     7741 ttaataaaaa ttgcttaaaa attcgtaaat aaatttaaat tcttaaaaat atgttaaaat
     7801 agactaaaaa tttcaaaaag aaagttaata caatgtgcca agaaaaacat actcatacac
     7861 attctcaaaa acatcttaaa gcagtttgca atcgtctaag tagaaccata ggacatttaa
     7921 gcgctattaa aagaatggtt gaaaatgaca aagactgtag tgaaatttta atccagcttg
     7981 ctgccgtaaa agccgaagtt aacaatactg caaaagtagt tttaaaagaa catttagctc
     8041 attgtatggt acacgccgta gaagaaaatg atattcaaag tatagaagaa ttaaacaagg
     8101 ctatagatat gtttatgaaa taatctaaaa ttagtcattt gtcctattat ttaaaaaatt
     8161 ttactcaatt aacttgacat tatatgacta aagttatata atagcaagtc tataaactaa
     8221 ataaaggata aaacatggca aatatacaag attttttaac tgataatatg ctttcaaacc
     8281 ttgaaagtgc agcatcttta gctatacatt ctaaaaataa tgaagttgta cctttacatc
     8341 ttttatgggc tttaagcgta gatagtacaa gtattttaaa tcaaatttta aataaattaa
     8401 atatttctaa agaagcctta gagcttgaaa ttaaaagcag aatttcaaaa cttgcaacga
     8461 gttcaaatgt aaaccgtgaa aatatacgct tttccaatga acttataaat tcattagaaa
     8521 atgctaaagg attaatgagt gctaatggag atagttattt aagtgtggat acttggctta
     8581 taagtgaaag tcaaaaaagt cctattaaag aaattttggc gcaattttta gatttaagag
     8641 aatttcaaaa agagcttgaa agtctaagag cgggacgaaa aatggatagc aaaacaagcg
     8701 atgaaacttt agatagctta aataaatttg gtatagattt aaccttaaaa gcaagcgagg
     8761 gtaaacttga tcctgttata ggcagagaag aagaaatcga acgtttgatg caaattttaa
     8821 tacgtaaaac caaaaataac cctatacttt taggtgaacc aggcgtagga aaaacagcta
     8881 tagtagaagc tttagcacaa agaattatta aaaaagatgt tccaaaatct ttgcaaaata
     8941 aaaaagtcat cgctcttgat atgagtgctt taattgcagg tgcaaaatac agaggagaat
     9001 ttgaagatag attaaaagct gtggttaatg aagtgataaa aagtgaaaat atcattcttt
     9061 ttatcgatga aattcacact atagtaggag ctggagcgag tgaaggcagc atggatgcgg
     9121 caaatatttt aaaacctgct cttgcaagag gtgaactcca taccataggc gcaactactt
     9181 taaaagaata tcgtaaatat tttgaaaaag atgcagcctt gcaacgccgt tttcaacctg
     9241 taaatgtagg tgagccaagt gttaatgagg ctttggctat gttaaggggt ataaaagaaa
     9301 agcttgaaat tcatcataat gtaaccataa atgatagtgc tttagtagcc gcagctaaac
     9361 tttcaaagcg ttatatagca gatcgttttt tacctgataa ggccattgat ttaatcgatg
     9421 aagctgcagc tgaactgaaa atgcaaattg aaagcgaacc aagttcttta agaaaagtac
     9481 gcaaagatat agaaacttta gaagttgaaa atgaagcttt aaaaatggaa aatgatgaaa
     9541 aaaatcaaaa aagactcgat gaaatcgcaa aagaactagc taatttaaaa gaaaaacaaa
     9601 atgccctaaa ttcacagttt gaaaatgaaa aaagtgtttt tgatggcata agtgctaaga
     9661 aaaaagaaat tgatctgctt aaaaatgaag cttctttggc taaagctaga ggtgaatttc
     9721 aaaaagcagc cgagctagag tatggaaaaa ttccaagtct tgaaaaagaa gtagaaattt
     9781 tagaagataa atggaaaaaa atgagtgaaa atggagtttt acttaaaaat caagtagatg
     9841 aggatttggt tgctggaatt ttaagcaaat ggacgggtat tagcgtgcaa aaaatgttaa
     9901 cttctgaaaa acaaaaattc ttagaagtgg aaaaacattt aaaagaaagt gtcataggac
     9961 aagataaggc cttaagtgct ttagctagag ccattaaacg taacaaagca gggcttaatg
    10021 cggacaataa acctatagga agctttttat ttttagggcc aacaggggta ggaaaaacac
    10081 aatcggctaa agctttggca aaatttttat ttgatgatga aaaagcaatg attcgctttg
    10141 atatgagtga atttatggaa aaacatagtg tttcaagact cttaggtgcg cctccaggat
    10201 atataggaca tgaagaaggt ggagagctta ctgaagccgt acgaagaaaa ccttatagcg
    10261 tgcttttgtt tgatgaagtt gaaaaagcac ataaagatgt atttaatgtg cttttaggga
    10321 ttttagatga tggtagagca accgatagca aaggtgtaac agtggatttt aaaaatacca
    10381 ttatcattct aacttctaat atcgcctcaa acgctattat gaatttaagc ggaaaagaac
    10441 aagaagatgc ggtaaaaaat gagttaaaaa atttctttaa acctgagttt ttaaaccgtt
    10501 tagatgatat tatcaccttt aatccacttg gaaaagatga agcttatgaa atagtcaagc
    10561 ttttatttaa agatttacaa atgagcttag aaaacaaggg aataaaagca agtttaagcg
    10621 aaaatgcagc ccttttaatc gctaaagatg gttttgaccc tgattttggt gctagacctt
    10681 taagaagagc tatttatgat cttatagaag ataaattaag cgatatgata cttgctgatg
    10741 aacttcatga aaatgatagc attatcattg atgcaaaaga tgatgaaata atcatcaaaa
    10801 aagcttaatc attttgaaag tagatctttc tactttcaaa atataatctc gctttcatta
    10861 aatttcatat ttgcttttgg taatggtgat ttggtggtat aataagcact ttctccttta
    10921 taatttccac gataaactcc attaggaatg ctaaattttc tagttgtatc agggaatttt
    10981 tctatatatt gagttaaaaa ttctctaaac acaggagcag ctgttctagc cccaccttct
    11041 gtataacgca taggcttgtt gttatcattt ccataccaaa tgattgcttc tatttcaggc
    11101 gtaagtccac aaaaccaagc atcaacactt ttattcgttg ttcctgtttt tcctgctatt
    11161 tctatatctt ttactcttgc attacgccct gtgccttttt caacaacatt tctcatcata
    11221 tctaaaacca gaaaactttg cgcttcatcg ctgactttac gctcatttga gttaaattcc
    11281 atgatggttt taccagtttt atcctgaact tgtctgataa tttgaggatc tttaatcgta
    11341 ccatagttcc caaacatggt ataaaatttc gaatactcca aaggagaaat accaaaactt
    11401 cccaatacga ttgataaatt aggcggtata tctttaaatc caaattccat tagtttagag
    11461 taaagaacat caagccccat atcaagtgcg agattaatgg tagctaaatt tcttgatctt
    11521 gttaaagctt cttttaaggt aattaaacct aaaaatttac ccccttcatt tttaggtttc
    11581 caatcctcat tattacccgc tccaccttca aaaattctag aaatatcagc aatttcactc
    11641 ataggcgaat atcctaaatt aatcgccact tgatacacaa aaggtttaaa agagcttcca
    11701 ggttgacgca tactttgagt agcgcggtta taattacttt tttcataatc aactccacct
    11761 accaaagcta aaacatcacc actttgatga tttaccacga ccatagctcc gtttaaagtg
    11821 cttaaatttg catctttatc gcgttttact atctcatcat aaccaaattt taaagcattc
    11881 tgtgccatat tttgaacatc taagtctata tttaaaatga ttttatatcc acctgttttt
    11941 aagtctttga tattagggct taattgttta atcacttcat ctacgacata aggagcagca
    12001 ttttgagtaa gcgtatcatc ataaacttgc ggaatttctt taatggctgt atcataatct
    12061 gcttttgaaa tccaacctag attatacatt cttgaaataa cattatttgc tcttgagatg
    12121 gaaagatcta aatgctttgt aggatcataa ctgctaggtg cttttggcat acctactagc
    12181 atagcaatct ctttaaggct tagttcattt aaatttttat gaaaataccc caaagctgcg
    12241 gtttttactc cataataccc atgtccaaaa aagataaaat ttaaatacct ttctaaaatt
    12301 tgttccttag ttaaaatggt ttccatttta taagcaagca aagcttctcg aattttacgc
    12361 gcaatagttc tttctggggt taattccgtg tttttaataa attgctgagt aagagtggaa
    12421 gctccttcca tggtttttcc accacttttt ataattttta cggcagctct aaaaatggcg
    12481 tcgatattaa ctccattatg ttcaaaaaag cttgtatctt ctatagcaac caaagcttct
    12541 ataaggcgtg gaggaagctc ttcataagga gcgtaaaaac gatgttgttc aaaaatatta
    12601 gccacaagct tgccatttct atcgtaaatt tgtgttgtaa gaggaggttt gtattcttta
    12661 aaagtataac cctcagtatc agcacttgtg aaaagataag ccacataaat aaatccagtt
    12721 ataaacaaaa gagtaaaaaa tgaaaaaata tattttaata ttttcataaa taagccttta
    12781 aagtttggat atcaagccct aaagcagtgc ttagatttcc tacttgttgg gtgatgaaat
    12841 tttgatgaaa accctcacac ataatacaac ccgccttgcc tttataaaga tcattttcta
    12901 cataatctct taaagcattt tcatcaaaat ttttaaaata aagtgtagtt tttgaaagag
    12961 aaaaaactct tttttcaggt tttacaagca aaaaagccga taaaatactt gcatactttc
    13021 cattttgcaa ggcaagcatt tcataagctt cttttttatc ctttgctttg gtaagaattt
    13081 tttcatctat acaaactata ctatctgcaa aaagcaaatt ttggttttga aaatctttgc
    13141 ctaaagtact taaaaattgt ctttcttttt caagaactat tttttgaaca tataaaaaag
    13201 gtgaaatatt tttatttaaa ttttcatcat aatcaaaact aacttgccta aaatcaatct
    13261 ttgcggtttt aagcaagtta gctcttgaaa tggaacttga agcaagaatt aacattaaag
    13321 tgctttttct atcgtttcta agctttgttt taaagcttca ttgattttgc ttaaatcttt
    13381 tccacctgca gtagcaaaat catctcttcc gccaccattt ccacctaaaa tttgcgccgc
    13441 ttctttaacc aaagctcctg cttttaaagg cacatcttta acgccagctg ctaaagtgat
    13501 tttttcatct tttacttgga taagtaaaat caccgcttta gcaaatttgt ttttaaaatc
    13561 atcaatcata gctttaatat cgccattatc tatacgtttt acgcaaattt caacaccttg
    13621 gatattttta gaatcaagct cggttttact tgaattttta agctcatttt ttaaacttaa
    13681 aatttcattt ttaagctttt taatcccgct taaaatatca ttatttttaa gttcatcttt
    13741 tactttagaa agttcttcga gttgattttt tacaaattct aaagccgctt tagaaaccac
    13801 agcttcaata cgtctaactc cagcactcac accactttct ttaactatgt aaaaacttcc
    13861 tatttgagca gtatttttaa catgagttcc cccgcaaagt tctttgcttt cacctagagt
    13921 taaaacacgc acattgcctt ggtatttttc attaaacaat gctatagcac cgcttttttt
    13981 agcttcttct aaaggcatat tttctaagat agcttcgctt gagtttataa tcattttatt
    14041 gactcttttt tcaatgcttt ctagctcttc tttgtttaaa gctttatgat gagtaaaatc
    14101 aaatcttagt ttattgcttt caaccaaaga tcctgcttgg cttacatgag aacctaaaat
    14161 ttctcttaaa gcatgatgta aaagatgagt ggctgagtgg tggcgtgcga tttgctctct
    14221 tttttctgta tcgattcttg catgaactat atcgttaact tttagttctt cgcctgcttt
    14281 tataaagcta agattgagat taaaaaactt ttgcgtatct aaaacttcac gcttagctat
    14341 aaatccacta tcagcacttt gccccccact tgttgcataa aaaggtgtgt tttcaagcat
    14401 cacccaaccc gcatctttaa gggtggaaac ttctttaaaa tcttcatcta aaagggctaa
    14461 aattttactt tcgcattctg ctttttcata acctacgaaa tgattttctc caaatttttc
    14521 aagtaagttt ttaaaatctc cgcttgcagt tttatctcca cttcctttcc aagaagcctt
    14581 agcgcgtgct ttttgctcat tcatgaaaag ttcaaatttt tcttcatcaa ctttaagatt
    14641 tttttctctt agcatatcag ccgttaaatc aagcggaaaa ccataagtat cataaagctt
    14701 aaaggctact tctccgctaa aaatttcttt agtgttttta agctcttcat taaaaatttc
    14761 aatcccattt tctatagtgc ttaaaaatct ttcttcttca aggcgaattt gttcttttat
    14821 aaagtctttt ttctcattaa gataggtata atgtccgccc attaaatcgc acacaacatc
    14881 aactagttta tacataaaag cttgtttaaa acctagcaaa tatccatgcc ttaaagcacg
    14941 acgcaaaata cgacgcaaaa cataacccct accttcttta tcaaaactta ccccttgtgc
    15001 aagtaaaaat acacttgatc ttatatgatc agctatgact ctaaaacttg ctccactttc
    15061 ataaacataa gttttgttac aaagttttga aatttcattg atgattggca taaaaagcga
    15121 gctatcaaaa ttgctaaatt taccttcttt aattgctgtt actctttcaa gccccattcc
    15181 tgtatcaata cttggctttg gcagtgggct aagcactcca tcagcacttc tttcatattg
    15241 cataaaaaca agattccaga tttctaaaaa tctatctcca tctccgccca tataatcttc
    15301 gcttgagtta aaatgctctt gtccttggtc ataaaaaatc tcactgcaag gaccacaagg
    15361 accagtatcg cccatttgcc agaagttatc tttatcacca aatttgtaaa ttctttcttt
    15421 ttgaatgtgt ttttgccata gattaaaagc ttcatcatcg ttttcatgca cagttacata
    15481 aagtctatct ttaggtagtt ttaaaacttc agttacaaat tcccaagcat aagctatggc
    15541 ttgttcttta aaataatctc caaaactaaa attcccaagc atttcaaaaa aagtatgatg
    15601 gcgtgcggta tatcctacat tatctaagtc attgtgcttt ccacccgctc ttatacaagt
    15661 ttgacagctt gttttgcgtg gagggtttgg gcgtggaatt tctcctgtaa atatactttt
    15721 aaaaggcacc atacccgcat tggtaaaaag taaagttgca tcatcaggaa ctaaaggact
    15781 tgacggggtt atctcatgtc cttttgatgc aaaaaaatcc aaataagctt ttctgatatc
    15841 catgaatttt cctaaagaaa tttttataaa aacatatcat accaaaatta ctttaaatta
    15901 agtaaaacta aaatacaata aacattttta tttaatttta tttctctaag gttttttatg
    15961 aattttatca atcttcaagc ccaatatctc gcatacaaag atgaaatcaa tgctgaaatt
    16021 gaaagcgttt tatcaagctc ttctttcata ggcggtgcaa agcttaacga atttgagcaa
    16081 aatttagctc atttcttagg tgttaaacac gctataggtt gctcaagtgg aactagtgct
    16141 ttataccttg ccttaagagt cttagatatt ggtaaagatg atgaagttat agtgcctagt
    16201 tttactttca tagcaacagc tgaagttgtg gccttggtag gtgcaaaacc tgtttttgca
    16261 gatataaatt tatcaaatta caatcttgat tttaaagcag tgcaaaaagc aataacttca
    16321 aaaactaaag ctgttatagc agtgagtatg tttggacaaa tgagtgattt aagggcttta
    16381 gaagaaattt taaaagataa aaatatcact ttgatcgaag atggtgcaca aagttttggc
    16441 gcaagtttca aaggagaaaa atcctgctct atagctaaaa tttcatgcac aagctttttt
    16501 ccttcgaagc ctttgggagc ttatggcgat ggcggggcta ttttttgcca tgatgatgaa
    16561 attgctaaaa aaataagaat tttactcaat cacggacaaa ctcagcgtta taaacatgaa
    16621 tttataggta taaatggacg ccttgacacc ttacaagcag cgattttaaa tgttaagtta
    16681 aaatacctag aaaaagaatt agacaaaaga caaaaattag cacaaattta taatgcaaat
    16741 ttaaaaaact gtcaaattcc acaaattaat ccaaatgctt ttagcgctta tgcacaatac
    16801 agtgttttag ttgaagatag agctagtgta ttgcgaaaat ttgaaaaagc taatatacct
    16861 tatgctatac actatccaac ccctttgcat aaacaacctt gctttagtga gttttcaaat
    16921 ttagaactta aaaattcaga atacgcaagc gaacacatct tatctttgcc tttttcacct
    16981 tttttaagtg aagaagagca agagcaagtt atttgtattt ttaaagatta attccatgaa
    17041 aataggtatc ataggtcttg gaaaaatggg gcaaaaccac ttaaatgaac ttagtaaaaa
    17101 ttctcatttt aaacttaatg cactttttga cctttgcaaa aatccaaacc taaatatttt
    17161 tgatgatatt ttttatgatg atttggataa atttttaaat caaaataatg atattatcat
    17221 catagcaaca cctacaaatt cacatttaac aatagcaaaa aaagttttta aacaatgcaa
    17281 atgcgtttta atcgaaaagc ctttagctct aaatttaaaa gaaatagacg aaatttcaaa
    17341 tttagctaaa gaatacagca taaaagtagg tgtaggtttt tgtgaaagat ttaatcctgc
    17401 ggttttagcc ctaaaaaaag agcttgaaaa tgaagaaatt atcagcatta acatacaaag
    17461 attttcaccc tacccacaaa gaatcagcga tgtagggatt ttgcaagatt tggctgtgca
    17521 tgatcttgat ttgctttgtt ttttaagcaa acaagaaata acaaaaacca atttgcttaa
    17581 aaaatacacc caagatcaaa caagagaaag tgaaagcatt attctatgtg ggcttgaaaa
    17641 atgtattgct agcatacatc aaagttggaa tagcacacaa aaactaagaa aaattcatct
    17701 tattactaaa aatcattttt atgaagccaa tttaaatgac ttttctttat taaaagatgg
    17761 aaattttata gaacttactc aacaaagtcc acttttttca gaacacgaag ctttgttaaa
    17821 acttatcgat aatcaaccca atcatttagc cagcacgagc gatgcttaca aagttcaaga
    17881 aattttagaa aggtttgcgt gaaattagtt ttatttttaa atatgggcgg agctacgaat
    17941 ttacaagatt gtgaagtttt tttaaaaaat atgtttaatg atccttatat tttaggaatc
    18001 aaaaatcgat ttttaagaaa atttgtagca tggatcataa caaaggctcg cgttaaagcc
    18061 atgcaagaaa actataaaaa aatgggcgga aaatcccctt taaacgaact tactcaaagc
    18121 ctgtgtgaca agcttaattt aaaacaagat gaatttaaat ttgattttgt aaatctttat
    18181 gttcctcctt ttgccacaga aattttgcaa aaatacactt taaatgcaag tgatgaaatc
    18241 attctttttc cactttatcc gcaccattct tgcaccacag taacttcatc tttagaagtt
    18301 ctgcaaaatg aaatttcaaa gcaaaaaatt caagcaaaag taaaaactat agatattttt
    18361 tacaaaaatg agctttataa cgagatgata gtttcgcaca ttttggctaa aaaaagtaaa
    18421 tttgatgcca aaattttgat tttttcagcg cattctttac cacaaagcat tattgacaaa
    18481 ggtgatttat atgaaaagca tgtaaatgat catgtagaaa ttttaaaaga aaagctaaaa
    18541 gatcattttg atgaatttat tttagcttat cagtctaaac taggccctgt aaaatggctt
    18601 gaaccaaata caagcgatgt tttggcaaat ttaaacgata aagctctgat ttaccctatt
    18661 tctttttgca ttgattgttc tgaaacgatt tttgaactag gtatggagta taaacattta
    18721 tcaaaataca attatgattt gataagttgc cctaatgata gtgatgaatt tatggaattt
    18781 attttaaagt atttatctga tcttaactaa gaatgaattt gagaaccttg tctatcattt
    18841 ttttaaactt ttttggtaaa aatttagccg actaaaccaa agtataagct ttttctccgt
    18901 gcaaactcac atctaagcct ttttgttcta cttctttttt cactcttaag tctgtaaaac
    18961 aagaaatgat cttaaaaaat aataaagctt atgagagcta aaaaaatcat acaaatcata
    19021 atagtaagaa tttgctcttt taaaagctct aaacttccac tgataaaaaa tccctccgcc
    19081 aagtgcattt ttggtaatca cattaggatt tgctttaaca cttgcaaaaa gccctgtagc
    19141 gattccttca caaacacctc cgattccgtg caaagaaaaa acatctaaag aatcatccta
    19201 tttgagtttg tatttaataa aactcaaact aaaataacaa aatgcagaag acaaagccac
    19261 tataacaaga aaagcataat tatctacata accgcaagct ggagtaatcc ctacaagccc
    19321 actaagccca cctaaaatag tcggttttta tagatgagcc ctcaagcact acccaagata
    19381 aaaagccaca agctgctgat ataatactta ctataaaagc attgatagca atatcattca
    19441 tttcgccagc acttccagca ttaaaaccca gccatcctat aaaaagcaaa atcacaccta
    19501 agaaagcata agaaatagaa tgcgcgtttt tatcctcatc atcacttttt ctagcaccca
    19561 ctatcaaagc tcctacaagt ccagcaaccc cagagctaat atacacaaca ccacccccag
    19621 caaaatcaag gctttctctt ttaagtaaaa acccttcgct actccaaatc atatgcgcta
    19681 acacatcata aactaaagta ctccaaaaaa gtaaaaatat caccaaaaca cccagtttaa
    19741 ttcttccaac caaagagcct gttatgatgg cagatgcaat aagtgcaaac atcatttgaa
    19801 aaatcataaa aagaatattt gaaacacctg aagcattata tccgctaata ccctctaaga
    19861 gaaaattctc gaaatttcct acaagcccaa gtccttcatc tttgccaaaa gaaaagctaa
    19921 atccaagcac tacccattgt aaagtaatga caccaaaagc aataaagcaa ttcattatgg
    19981 tattgagagt atttttactt cttaccatac ccgaataaac attgccaaag ttggagttat
    20041 aagcaaaact agtaaagtac acaacacaat aaaacttgaa tttatcgtat tcatttactt
    20101 accctttctt acaaaatata
//
LOCUS       DAPIWQ010000014        18810 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.014, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000014 DAPIWQ010000000
VERSION     DAPIWQ010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18810)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18810)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18810
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.014"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            363..1301
                     /gene="trbB"
                     /locus_tag="RJ267_000377"
     CDS             363..1301
                     /gene="trbB"
                     /locus_tag="RJ267_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002792775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer ATPase TrbB"
                     /protein_id="HDV7388260.1"
                     /translation="MGNLEFQARINEKIKREFGDILTHLEDKETIELMLNSDGKLWLE
                     KLGQDMICLGEFSEAKAKSIITAVSTLLDTTTNAENPILECELPLDGSRFEALLPPIV
                     AKPTFTIRKKAVKIFTLDDYVESKILTPKQKEVLINAIKERQNILVVGGTGSGKTTFS
                     NAIIDGISKITPEHRIVIIEDTAELQCASENKVILRATDKVDMLRLLKATMRLRPDRI
                     IVGETRGKEALDLLKAWNTGHPGGIATIHANSANGGLTRMEQLISEATSAKMSKLIAE
                     AVNLIVFISKTKEGRKIKEIIKVIDYENDKYITQGV"
     gene            1302..1598
                     /locus_tag="RJ267_000378"
     CDS             1302..1598
                     /locus_tag="RJ267_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbC/VirB2 family protein"
                     /protein_id="HDV7388261.1"
                     /translation="MKKFLLLFLILGLGYALASTTGAGLPWESPLQTIKQSISGPVAF
                     VISLLAIIAAGAGLIWGGELSGFLKTLIYIVIIIALVVGANSFMSLFTTSGALI"
     gene            1598..1885
                     /locus_tag="RJ267_000379"
     CDS             1598..1885
                     /locus_tag="RJ267_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbD"
                     /protein_id="HDV7388262.1"
                     /translation="MEELHRVDIYSALNKPNLMLGADRELIMMTGLISASLIFTGATI
                     VTTIVGVVLFFICSLLLRLMAKSDPLMRQIFIRQNKYKKFYYPQSTPFSKD"
     gene            1887..4352
                     /locus_tag="RJ267_000380"
     CDS             1887..4352
                     /locus_tag="RJ267_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbE"
                     /protein_id="HDV7388263.1"
                     /translation="MLALKEFRSKAKAFPDILNYASFIDEGILLNKDGSLTAGFYYRA
                     GDISSMTISERNTLSARINAILNTLGNGWAVHIDCSRIKTENYIDGETFYKSNIAQIL
                     ENEKKHYFENVEHFENLFTMIFTYLPPHKNISKITNLMIIDENVNKNQSDKILEYFKT
                     TLQKLEDSLSNYIKIERMLPRVVTDEYNNEYILDDMLEYINFCICGERQKIILPNAPM
                     FLDCLLGGKHFETGMYPRIDNQYIGIIAIEGFPSESYPNILNALTELNFDYRFNTRFI
                     FLDHYEAEKSLNKYRKKWQQKTRGWLDQLLDRPTRKQDDHAVLMVQELDSALSESKSG
                     MIGYGYYTANIVVFDRDNENLEYKLKDIRRVLEGLGFLSRTETINSVEAYLGTLPGFV
                     YPNLRRPILNTLNLTHLIPLASVWAGEKYNPSDKFPPNSPPLMQVVTSGNTPFRLNLH
                     VSDLGHTLIFGPPGSGKSTLLANIFLAWQKYPNAKIYAFDKGQSLLAPTLATGGIHYN
                     IAGENSSLAFAPLANIKTESEIAWAEFWIETCLKLQNVNITPKHKKLIHEALISHTNT
                     NSTSLTEFVSALQDNDLRDALSYYTISGTGGFLFDSEQDKLSLSNVTTFEIEDLMSLG
                     DQYIVPTLLYIFNRIEKGLDGSPTLLIIDEAWIALNHPAFKDKIISWLKVLRKANVAL
                     VMATQSLSDSAKSGILDILQEYCPTKIFLPNPEAYKKGSENVLAPYDFYKIFGLNDVQ
                     IGIITNAIQKREYYYTSPLGTRLFNLALGKTNLAFTGISDKVSVKRVNQLYEQYKENW
                     AYKWLEEKEINYKRFDNSKKEQI"
     gene            4349..5002
                     /locus_tag="RJ267_000381"
     CDS             4349..5002
                     /locus_tag="RJ267_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbM"
                     /protein_id="HDV7388264.1"
                     /translation="MKNFIFGITCLSVITSSNIFADDVLTGDTKLACEAILCLSSGTR
                     PAECGPSLARYFAIHFKKPWKTIDARKAFLNLCPIQNDTNVEDLVLKNLVDDVLPSSD
                     PRQCTPNYLNTQVETQRSYSTFGIMSYRINPNMPSFCYALINHQYTDYKMPKYTCTGE
                     FYNSLEWKLSAKLQLITQQVYQSLPDNQRYMISKTCGDRNCYEYYQKIPFTKECWTY"
     gene            5014..5817
                     /gene="trbJ"
                     /locus_tag="RJ267_000382"
     CDS             5014..5817
                     /gene="trbJ"
                     /locus_tag="RJ267_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein TrbJ"
                     /protein_id="HDV7388265.1"
                     /translation="MKKSLFGVKKATSTIIATLIIGTNNAFAGGIPVIDLSAIANQVK
                     DYAMQLQQYEQLYQQLQQQLLMVKMQQQNLQNLGKYDWENLGTILYQVNNVMNQVNGL
                     SYDIGNVSKKFEDTYKDFTGYSDDLTNATNEKERYELYSDRYKQIAQTNQNTFKGTLQ
                     QLELQYQDLQNEDTIISKLKERSEGSKGNLQAIQATNDLITYQIDEVRKLRVTLMNQN
                     NMLTNYLASQNNKDVLEQTKLEKQMQSDSRVPYGIGKNQNYQTDALKWK"
     gene            5866..6144
                     /locus_tag="RJ267_000383"
     CDS             5866..6144
                     /locus_tag="RJ267_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HDV7388266.1"
                     /translation="MKHFIFGGLISLGALAFLIGCGDEAKTSEYYEKHIDEAKARVAE
                     CKKMEKMNETQQRDCSNAKWAVEMQSDSRVPYGIGKNQNYQTDALKWK"
     gene            6092..7318
                     /gene="trbL"
                     /locus_tag="RJ267_000384"
     CDS             6092..7318
                     /gene="trbL"
                     /locus_tag="RJ267_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein TrbL"
                     /protein_id="HDV7388267.1"
                     /translation="MELAKIKTIKQTPLNGNKLRLILIFCFLIPNLAFGAETAEGVLN
                     ILRNGLLSWTPLIKTACLWVFFTLVVIDLVWTFGLKALSGFEFGEFLATLIKKIIYIG
                     IFIFLFNVDYWLQIIFNSFSQLATNVNNGLDIYPSNIIQNAFKIVMIILKSMSVTSPG
                     ESFFKVISGIIILIAFVLMAIDLLIVYLKFFLMNVIIYFALALGGLNHFKQIGLNPIT
                     TAIKVGIELFMIQGLMGLCITIIEKTYNEMDQEISYEITLAVLVTSLIFCMITKMIPG
                     IIEAVFNGSIGESAGAAAGFRAVATMAAGAATGAAVGAVGVTRAMNAAKELHLAEGGK
                     GGMDLVKGVAKHLATSGGEHLRDNLTKGRMPHQMANRLQEKLKDIQGKASEGGISAGT
                     PKEESYQSGVNPDVAK"
     gene            7648..8343
                     /locus_tag="RJ267_000385"
     CDS             7648..8343
                     /locus_tag="RJ267_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbF"
                     /protein_id="HDV7388268.1"
                     /translation="MNIFRQKQKIEKNEFDTSSNPYLNAKTEWLERYGDYITRAKNWQ
                     IVAMISLAMCFVCVLFIGYIGSQNKLIPYIVEVDKLGNTAKVGMVQNIDLKNPNVIKY
                     SLNTFIYSWRSVWGNPQTQRKFIFDAYTYVEPKSKAFNFLNEEYRKNNPFERATKENV
                     RVKIKNIVPQNIDTWQVEWEETTTNLNEDILSKETYRGLFQIKQIVPTTEEQILKNPL
                     GIFITDLNFAKIL"
     gene            8354..9514
                     /gene="trbG"
                     /locus_tag="RJ267_000386"
     CDS             8354..9514
                     /gene="trbG"
                     /locus_tag="RJ267_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein TrbG"
                     /protein_id="HDV7388269.1"
                     /translation="MKKFIFNTNTATREIHYTPTSGARLKSLDYNYTKEYNYNYDEFY
                     GIHLSSFRGLDFRHKGDDLVANTPKNYTQKLKKLSLIASLLLFIGSSVYANNLNERDF
                     ANLTPKEKKDLAIAQKWINSKTTTIQGNNGEVIFLYGEAMPSIVTAPLRLTDISLEPG
                     EVIKDVQIGDSIRWAISLSISGEEPYLVSHIIVKPTDKNLQTTMNIMTNKRVYRLNLI
                     SEAKKFMPAVSFNYTNQIIHTLEDYKNQMKAKSEAKNFYKTKDDEIPSNIENLDFGYS
                     IEGNAPFKPLRIYNDGIKTYIQMPKNLKFYEAPALMVLDSSNEKQIVNYRLKYDTFIV
                     DRLFNKAILLSNVGSKQEKITITKHSNKANQDIVNNVLYDLSLQNKNKKDNK"
     gene            9511..9948
                     /locus_tag="RJ267_000387"
     CDS             9511..9948
                     /locus_tag="RJ267_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388270.1"
                     /translation="MRILFLALIALFITSCAKVNSEYFTSSFSVKETKINYDKIADDF
                     SQFIISYYLPNKTTFYFNDINDNKAFSDYFVNTLRNKGYAISNDHSRKNLTFLSYQVS
                     QIDNENVIAIFNINESKINVIYKIIENKLVKINMTSFNFTPQN"
     gene            9959..11188
                     /locus_tag="RJ267_000388"
     CDS             9959..11188
                     /locus_tag="RJ267_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbI"
                     /protein_id="HDV7388271.1"
                     /translation="MLEINTSPNKFLPKNNKRLSKVPIIILFTIAVIVLFSVFYVALS
                     RKQNLEKQATQTAPKEETQSTSKIENIASYVDELSQTKQIKEQNSTLQPVNNTIPITQ
                     QVQQEIKPQPIQTPILMQNNEIDERELRLKKDMQLKALISQTSLGIKSEIQEKSTIGN
                     HFTPSQTDYPNIPNDQVNTSAGLGGLDTNANKDAQGQQFLSQKNDNGYLKHSKQKPLS
                     PYEIKAGWNIPAVLITGVNSDLPGQILAQVTQNVYDTSTGKYLLIPQGTKVVGAYSSN
                     IIYGQSRLLVAWNKLIFPNGDTLNIDSMQGTSQDGYTGFEDEVDNHYFRIFGSAFLLS
                     SITAGIALSDNSSTNGEKETASDKAISQAIQQMGQVASEMIRKNMNVSPTLKIRPGYK
                     FNIFVTKDIILEPLELR"
     gene            11188..11433
                     /locus_tag="RJ267_000389"
     CDS             11188..11433
                     /locus_tag="RJ267_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388272.1"
                     /translation="MNKLLKERRIIIFGNLFCIFILVFFTYINWNNLSMLIPAWIVIS
                     ILEIILMIAYFDNKKGIQNYKNNIELYKNLAKDLNND"
     gene            11426..11971
                     /locus_tag="RJ267_000390"
     CDS             11426..11971
                     /locus_tag="RJ267_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HDV7388273.1"
                     /translation="MIDIALIEQCKNPNVETQIIQKIIQIESNNQQFAININKIGSFI
                     PKTKDEAKTLTQSFINKGYSVDIGLMQFNSNNLKTPTFKNYSIDDLLDPCKNIKAGSD
                     IFYLAYEMTNENLAKEERINQALSIYNTGDLKKGFSNGYVAKYDSTAKMIDNLEEKAR
                     KSDTRIKIAYNLFNLQTQKKE"
     gene            12068..12430
                     /locus_tag="RJ267_000391"
     CDS             12068..12430
                     /locus_tag="RJ267_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDV7388274.1"
                     /translation="MINNITIGGRLTADAELRHSNQGSIICTFTLANNRKYKEIENST
                     YIEVSLFGSFANAMHPYLKKGISVDVVGELTQDTWEHEGKIYSKHRIKAKEIDFRTPK
                     KEKQTIPNIEEGENYEGF"
     gene            12417..12557
                     /locus_tag="RJ267_000392"
     CDS             12417..12557
                     /locus_tag="RJ267_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388275.1"
                     /translation="MKDFRELETIPNFSYEIDPLTAEELGAFEENALSEEDAKEGIED
                     QG"
     gene            12562..14775
                     /locus_tag="RJ267_000393"
     CDS             12562..14775
                     /locus_tag="RJ267_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HDV7388276.1"
                     /translation="MKNKDFIQETADKIIESLKNGTAPWIKPWKGIDLANNMPYNPIT
                     NKPYNGINSINLMLQNYSDPRWLTYKQAQSINAQVKKGEKSTLIQYWQFSEIVDKLDE
                     EGNVITNEKGEVEQIEIKLENPKVFFAYVFNAEQIENMPKLEPKQEIDNFQIIKEAQK
                     ILDDSKAIIHHQGNRAFYNATNDTITLPPKENFLNESAYYATALHELGHWSGHSSRLD
                     RDLNNPFGSKEYAKEELRAEIASFLFNGKIGLDYDPGQHLSYIDSWVQILEDKPNEIF
                     KATSDATKIVNFIESLSLEQKQKIELENSNTQKQELTQDKELNLVTKKTYLYVPFEEK
                     ESAKKAGAKWDKEAKMWYAPKGTDLKNFNQWLNQSSLTPNYSNTHDEFKAFLEKYELN
                     IEGQPIMDGKLHRVSVIGDKGREKSGAYVGFLNGHPAGFVQNYKTGIKENWKSANSFE
                     NTKNQEINFKNAIEHNKAMKEAREKELAQAYEKTALKLEEEYNNAKWANSEHPYLKEK
                     GFDKNFYLKQDKNGNLLIPLRDIEGKYWATQRIFANGDKMIGATRTAEEKEQGIEYPA
                     KKQGNFFLLGAKNLDNVNEVYICEGFATSASVYEATKSPTIMGVDAGNLEIIVTSIKE
                     KYPKMNIIIAGDNDIKKELNGNKNVGKETALGIQKKYPEIKVVLPNFTNEESQKGLSD
                     FNDLMKSRGLEEIKKQLKEQIAKQLMAEKATTKALDKNKGINKEISTKKDIGISL"
     gene            14772..16595
                     /locus_tag="RJ267_000394"
     CDS             14772..16595
                     /locus_tag="RJ267_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HDV7388277.1"
                     /translation="MKKQTNQALVYMLGLIGIFLTFTIISQIATQYLAKSFNYSPSLG
                     ETLFYGFYNPFKWISWSYVYYSFYPDFFKKFFISMFAGIAFCFIVFILVKLAFLRKAK
                     AIENLHGSAHWATLEEVKESGVFDKDKGVYIGGFEHKKTLHYLRHDGPEHIMLFAPTR
                     SGKGVSLLLPTLLSWEESALIFDIKGELWALTAGWRQKYAKNKVLKLDPTCLDDSAVK
                     FNILEEIRLETMHEIKDTQNIAINLIFKGETPPTNPTQGSTSYFKSEAGNFLVSIILY
                     ALHLKKYRGENTPNLTDIYKFINDPNQSIDELLEEMVECDISTMDKNTQEIIQSISRS
                     MKNKATQELSGVIGTASETLNLYIDPILAKNTAKSDFKIKDLMNHDNPVSLYLIIPPG
                     QKDRLRPFFNLLINQIFRTLTDDSLSFKNGENVKRYKHKMLVLADELTMFGKLGVLEE
                     NLAYMAGYGMKFYGSIQDIQQLYSIYGEKETIISNCHIRIAFAPNKIETAKLLSEMGG
                     ITTIIKKSLTSSGKRTAVMLGNVSETIQEVQRPLITADECMRLPSAKKDKDDKIIAPG
                     DMLIFIAGQAPIYGKQILYFKDPAFSARSKVMLDKQISDIL"
     gene            16612..17331
                     /locus_tag="RJ267_000395"
     CDS             16612..17331
                     /locus_tag="RJ267_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraL"
                     /protein_id="HDV7388278.1"
                     /translation="MAKIHFVLNGKGGIGKSFISSLLCQYFLDKGESIVAIDTDPNNT
                     TLLNVKALKAKFLQLIDDEGKFDVRAFDKIVELAFEKKAKNYIIDSGATTFIPLIDYL
                     KENEVLDFLTSNSLEVFMHVPIVGGQARDDTILGLTQLTQAFNCSFVVWVNEYHGSII
                     KDDLEFEETKEYQAIKEKIKAIIYLNALSKDTFGKDLLELTSKNLTFGEAMQDKNFSL
                     MSKQRLKIFKDKAFIQIGNIL"
     gene            17423..17665
                     /locus_tag="RJ267_000396"
     CDS             17423..17665
                     /locus_tag="RJ267_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388279.1"
                     /translation="MQKQYPEVHSLEESLAILKKYKDDLTKEQYEGIKSVICGHAIED
                     MFANEKDVIDMIKIAKDEANADEIIAEYKREWGVND"
     gene            17658..18341
                     /locus_tag="RJ267_000397"
     CDS             17658..18341
                     /locus_tag="RJ267_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HDV7388280.1"
                     /translation="MIDKVLKFLDDGIPKNDFDRQLLASNLVGATNLIELNKREREIT
                     LKKQLKLQLNPIKGNFDYQHLKDIHKALFEDVYTWAGQDRMQMGLKEKFAKYAPNGAI
                     INFVPGKELDKYSKIIFDELAKNNYLKNSKDLNHFAKNLAKFMGEINALHPFREGNGR
                     TQRIFLNELAKNAGYKLDLNLISKHKMIHACAEASQLKPGRLEALIKDNLKNFKQNLD
                     LEQNKGISL"
     gene            18346..>18810
                     /gene="lepB"
                     /locus_tag="RJ267_000398"
     CDS             18346..>18810
                     /gene="lepB"
                     /locus_tag="RJ267_000398"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDV7388281.1"
                     /translation="MRKTIAIFAFSFVFLLILSYLIFYFGGFHFNHTRSMPLGLYKEI
                     SSSIFNKNDIVLLKIPQKKEILLKKIVAINGDFVEVNRQGVFINKTLMPDSKIFSFDS
                     EGNPLEFKPFKCKLKENELFVMGENIKSYDSRYFGVINILQNEVKKVKSIILF"
BASE COUNT         7423 a         2554 c         3008 g         5825 t
ORIGIN      
        1 ataaaaaatg tatatttttt taccaaaaaa tgagacaaaa gcaaaaaatc tatattttgt
       61 ctcaagaaaa tgaaaaaaat aaacattcaa ttgttaaaaa tgtatcattt tattagaaaa
      121 aaaccttgac aattaaatta aaaataatat aataacggta ttagttttta atttttggag
      181 aattttttga gaaaaaataa acttaatttt tacttaatag ctagagagag agagagagag
      241 agagagagag cagaataatc ttaaactttt cttaattttt aaacttttac aactccacaa
      301 tccatacaaa aaaaatcctg acaaattttt aactcttgta attgaatcaa aaggactctt
      361 caatgggtaa tcttgagttt caagcaagga tcaatgaaaa aataaaaaga gaatttggcg
      421 atattttaac tcatttagaa gataaagaaa caatagagct tatgctaaat tcagacggca
      481 aactttggct tgaaaagcta ggtcaagata tgatatgtct tggcgaattt tcagaagcta
      541 aagcaaaatc tatcattacc gcagtttcta cccttcttga tacaaccaca aatgcagaaa
      601 atcctatttt agaatgtgaa ttgccacttg atggatcaag atttgaagct ctattgcctc
      661 ctattgttgc aaaaccgacc ttcacaatta gaaaaaaagc tgtaaaaatc tttactcttg
      721 atgattatgt agaatctaag atcctcacac caaaacaaaa agaagtttta atcaatgcta
      781 ttaaagaacg ccaaaatatt ttagttgttg gtggaactgg tagtggtaaa accacttttt
      841 caaatgccat tattgacggc atttctaaaa tcacacccga gcatagaata gtaatcattg
      901 aagatactgc agaacttcaa tgtgcgagtg agaataaagt aattttaaga gctacggata
      961 aagtagatat gcttaggctt ttaaaagcca caatgcgact tcgtcccgat agaattatag
     1021 taggcgaaac aagagggaaa gaggctttag acttattaaa agcttggaat acaggacacc
     1081 ctggaggaat agccacaatc catgctaatt ctgcgaatgg gggacttaca agaatggaac
     1141 aattaatctc tgaagcaaca agtgcaaaga tgagcaaatt aattgctgaa gctgtgaatt
     1201 taattgtttt tatctcaaaa actaaggagg gcagaaaaat aaaagaaatc ataaaagtaa
     1261 ttgattatga aaacgacaaa tatattacac aaggagttta aatgaaaaaa tttttactat
     1321 tatttttaat attaggtcta ggttatgcac tagcttcaac tacaggtgct ggtttgcctt
     1381 gggaaagtcc attacagaca atcaaacaaa gtatcagtgg tccggtagct tttgttattt
     1441 cgcttttggc gataattgct gcgggtgctg gtttaatttg gggaggagag cttagcgggt
     1501 ttttgaaaac tttaatctat attgtaatta taatcgcttt agttgtagga gctaatagct
     1561 ttatgtccct attcacaacg agcggagcat taatttaatg gaagagttac atagagtaga
     1621 tatttatagt gcattgaaca aaccaaattt aatgcttggt gcagatagag aactaattat
     1681 gatgacaggt cttatttctg catctctaat ttttacagga gcaacaatag ttactactat
     1741 cgttggagtt gtattgtttt ttatctgcag tcttctttta agattaatgg caaaaagcga
     1801 tcctcttatg cgtcaaattt ttatacgcca aaataagtat aaaaaatttt actatccgca
     1861 aagcacacca ttttcaaagg attaaaatgt tagcacttaa agaattcaga agtaaagcaa
     1921 aagcatttcc cgatattcta aactatgcaa gttttataga tgaaggtatt ttacttaaca
     1981 aggacgggag tttaacagca ggattttatt atcgtgctgg agatattagt tctatgacta
     2041 taagtgaaag aaatacttta agtgctagaa ttaatgcaat attaaatact ttaggtaatg
     2101 gctgggcggt tcatattgat tgctcaagaa ttaaaacaga aaattatatt gatggtgaaa
     2161 ctttttataa aagcaatatt gcacaaattc ttgaaaatga aaaaaaacat tattttgaaa
     2221 atgtagaaca ttttgaaaat ctttttacaa tgatttttac ttatttacct ccacataaaa
     2281 atataagtaa aatcactaat ttaatgataa ttgatgaaaa tgttaataaa aatcaaagcg
     2341 ataaaatatt ggaatacttt aaaactactc ttcaaaaact agaagatagt ttgagcaatt
     2401 atatcaaaat agaaagaatg ctaccaaggg tagttactga tgaatataat aatgaatata
     2461 ttttagatga tatgcttgaa tatattaatt tttgtatttg tggtgaaaga caaaaaataa
     2521 tattaccaaa tgcccctatg tttttggatt gtttgttggg cggaaaacat tttgaaacag
     2581 gaatgtatcc aagaattgat aatcaataca taggaattat tgctattgaa ggttttccaa
     2641 gtgaaagtta tccaaatatt ttaaatgcac ttacagagct taattttgac tatagattta
     2701 atactagatt tattttttta gatcattatg aagctgaaaa atcacttaat aaatatcgta
     2761 aaaaatggca acaaaaaaca agaggttggt tagatcaatt attagatcgc cctacaagaa
     2821 aacaagatga tcatgctgtg cttatggtgc aagaactaga ttctgcatta tcagaatcaa
     2881 aaagcggtat gatagggtat ggttattaca ctgctaatat tgtagttttc gatagagata
     2941 atgaaaattt agaatataaa ttaaaagata taagaagagt tttagaaggt ttaggtttct
     3001 tatcaagaac tgaaacaatt aattctgtag aagcttattt gggaacttta cctggatttg
     3061 tttatccaaa tttacgccgt cctatattaa atacccttaa cttaacacat ttaattcctt
     3121 tggcgtctgt ttgggcagga gaaaaatata atccaagcga taaatttcct ccaaattctc
     3181 ctccgctgat gcaagttgta acttctggca atacgccttt taggttaaat ttacatgtca
     3241 gtgatttagg gcatacttta atttttggtc ctcctgggag tggtaaatca actcttttgg
     3301 caaatatttt ccttgcttgg caaaaatatc caaatgctaa aatttacgca tttgacaaag
     3361 gacaaagctt actagctcct acactcgcaa caggtggaat tcattataat attgcaggag
     3421 aaaactcatc tttggcgttt gctcctttag caaatatcaa aacagaatct gagattgcat
     3481 gggctgaatt ttggattgaa acttgtttaa aattgcaaaa tgtcaatatt acaccaaaac
     3541 acaaaaaatt aatacatgaa gctttaattt ctcatactaa tacaaattct acttctttaa
     3601 ctgaatttgt atcagcattg caagacaatg atttaagaga tgctttaagt tattacacaa
     3661 tttctggaac aggtggtttt ttatttgatt cagaacaaga taaattaagt cttagtaatg
     3721 ttacaacttt tgaaatagaa gatttaatga gcttaggtga tcaatacata gttcctactt
     3781 tactttatat ttttaatcgt attgaaaagg gattagatgg aagccctaca ttattgatta
     3841 ttgatgaagc atggattgca ttaaatcacc cagcattcaa agataaaata attagttggc
     3901 ttaaagtttt aagaaaagca aatgtagctc ttgtaatggc tacacaaagt ttaagtgata
     3961 gtgcaaaaag tggaatttta gatattttac aagaatattg ccctactaaa atatttttac
     4021 caaaccccga agcttataaa aaaggaagtg aaaatgtttt agccccttat gatttttata
     4081 aaatatttgg acttaatgat gttcaaatag gaattattac taatgctatt caaaaaagag
     4141 aatattatta cacttctcca cttggaacta ggctttttaa tctagcactt ggaaaaacta
     4201 atttagcctt tacaggtatt agcgataaag taagcgttaa aagagtaaat caactttatg
     4261 aacaatataa agagaattgg gcttataaat ggttagaaga aaaagaaata aactacaaaa
     4321 gatttgataa ttcaaaaaag gagcaaatat gaaaaatttt atttttggaa taacttgttt
     4381 aagtgttatc acatcaagca atatttttgc tgatgatgtt ttaactgggg atacaaaatt
     4441 ggcatgtgaa gcgattttgt gcttaagtag cggaactcgt cctgctgaat gcggtccttc
     4501 gttagctaga tattttgcaa tacactttaa aaaaccctgg aaaacaattg atgcaagaaa
     4561 agctttttta aacctttgcc ctatacaaaa tgatacaaat gtagaagatt tggtattaaa
     4621 aaatttagtt gatgatgtat tgccaagttc agatcctaga caatgcacac caaattattt
     4681 aaacacacaa gtagaaacac aaagaagtta ttctactttc ggtattatga gttataggat
     4741 taatccaaat atgcctagct tttgctacgc actaataaat catcaatata ccgactataa
     4801 aatgcctaaa tacacatgca caggggaatt ttataattct ttagaatgga aactaagtgc
     4861 aaaattacaa cttataactc aacaagttta tcaaagcctt ccagataatc aaagatatat
     4921 gatttctaaa acttgcgggg atagaaattg ttatgaatat taccaaaaaa tcccattcac
     4981 taaagaatgc tggacttatt aaaaggagta gatatgaaaa aatctttatt tggcgtaaaa
     5041 aaagccactt caacaataat tgcaacttta attataggaa ctaataatgc ctttgcaggt
     5101 ggtattcctg taattgatct tagtgctatt gctaatcaag taaaagatta tgcaatgcaa
     5161 cttcaacaat acgagcaact ttaccagcaa ttgcaacaac aacttctcat ggtaaaaatg
     5221 caacaacaaa acttacaaaa cttgggtaaa tatgattggg aaaatctagg cacaattctt
     5281 tatcaagtta ataatgtgat gaatcaagtt aatggtcttt cttatgatat aggcaatgtt
     5341 tctaaaaaat tcgaagatac ttataaagat ttcacaggtt atagcgatga tcttacaaac
     5401 gccacaaatg aaaaggaaag atacgaactt tattctgata gatataaaca aattgcacaa
     5461 acaaatcaaa atacatttaa aggaacatta caacagctcg agcttcaata tcaagactta
     5521 caaaatgaag acactattat ttcaaaactt aaagagcgtt cagaaggttc taaaggaaat
     5581 ttacaagcaa tacaagccac taatgatctt atcacttatc aaattgatga agtaagaaaa
     5641 ttaagagtta ctttaatgaa tcaaaataat atgcttacaa attatttagc gtcgcaaaat
     5701 aataaagatg ttttagagca aactaaatta gaaaaacaaa tgcaatccga tagtcgcgtt
     5761 ccttatggaa ttggcaaaaa tcaaaactat caaacagacg cccttaaatg gaaatagaat
     5821 aatgttaaaa tactatgttt caaaatttta taaaaggaga taacaatgaa acattttatt
     5881 tttggtggat taataagctt aggtgcttta gcttttttaa taggttgtgg tgatgaagca
     5941 aaaacaagtg aatactatga aaaacacatt gatgaagcta aggctagagt agcagagtgt
     6001 aaaaaaatgg agaaaatgaa tgaaactcaa caaagagatt gttctaacgc aaaatgggca
     6061 gttgaaatgc aatccgatag tcgcgttcct tatggaattg gcaaaaatca aaactatcaa
     6121 acagacgccc ttaaatggaa ataaattaag attaatttta attttttgtt ttttaattcc
     6181 aaatttagct tttggagctg aaactgcaga aggtgtccta aatatattac gcaacgggct
     6241 tttatcatgg actcctctta ttaaaaccgc ttgtttatgg gtatttttta ctttagtcgt
     6301 tatcgatttg gtttggactt ttggtttaaa agctttaagc ggttttgaat ttggggagtt
     6361 tttagctacc cttattaaaa aaatcatcta tattggaata ttcatattct tatttaatgt
     6421 agattactgg cttcaaatca tttttaatag cttttcgcaa ttggctacaa atgtaaataa
     6481 tggacttgat atttatccaa gtaatattat tcaaaatgct tttaaaattg ttatgataat
     6541 tttaaaatct atgagtgtaa caagccctgg agaaagtttt tttaaagtta tttctggaat
     6601 tattatttta atagcttttg tgcttatggc gattgatttg cttatcgtat atctcaaatt
     6661 tttcttaatg aatgtaatta tatattttgc tttggcgtta ggtggtttaa accattttaa
     6721 acaaataggc ttaaatccta taacaacagc cattaaagtt ggaatagaac tttttatgat
     6781 acaaggtttg atgggattat gtattacaat aatagaaaaa acatataatg aaatggatca
     6841 agaaatatca tatgaaatta cattagctgt tcttgttacc tctctcatct tctgcatgat
     6901 tacaaaaatg attcctggta ttatagaagc tgtatttaat ggtagtattg gagaaagtgc
     6961 aggagctgct gcaggtttta gggctgttgc caccatggca gcaggggctg ctacgggtgc
     7021 agctgtagga gctgtcggtg ttactcgtgc catgaacgca gctaaagagt tgcatttagc
     7081 agaaggtggt aaaggtggaa tggatctagt taaaggcgta gcaaaacatt tagcaacttc
     7141 tggaggagag catttaagag ataatcttac aaaaggcaga atgcctcatc aaatggctaa
     7201 tcgcttacaa gaaaaactta aagatataca aggaaaagca agtgaaggcg gtatatcagc
     7261 aggaacacca aaagaagaaa gctatcaatc aggagtaaat cccgatgttg caaaataata
     7321 aaactaacgc aagggtggta agtccttgca ttagcgtttc acaaacggcg ataatttact
     7381 ttttaggctt aaaaaagatt tttcttattt cttctctaaa aagtgtaatt actactgcaa
     7441 ttaccgcaat gaaaagatta aaaagttcca ttatggactc ctgtaaaata aagtgtttcc
     7501 accccaagcc caacttaata gccaaaaaaa aagctcaatt cctattgaaa gaattgagcc
     7561 aaacacatta taaacaggtt gtgaaacttt tagtccatct accaaatgga ttaaattaat
     7621 tatatcataa aaaggagtaa aaaaataatg aatattttta ggcaaaagca aaagatagaa
     7681 aagaatgagt ttgacacttc aagcaatcct tatcttaatg caaaaaccga atggctagaa
     7741 agatacggcg attatatcac tcgtgctaaa aactggcaaa ttgtagcgat gatcagctta
     7801 gctatgtgct tcgtatgtgt tctctttata ggctatatcg gctctcaaaa caaacttata
     7861 ccttatattg tagaagttga taaactagga aatacagcta aagtaggcat ggttcaaaat
     7921 attgatttaa agaatccaaa tgtcataaag tatagtctaa atactttcat ttattcttgg
     7981 cgttctgttt gggggaatcc acaaactcaa agaaaattta tatttgatgc ttacacatat
     8041 gtagaaccaa aatctaaagc atttaatttt ttaaatgaag aatatcgtaa aaataatcct
     8101 tttgaacgag caactaaaga aaatgtgcga gttaaaatta aaaatattgt ccctcaaaat
     8161 attgatactt ggcaagttga atgggaagaa acaactacaa atttaaatga agatattctt
     8221 tctaaggaaa cttatagagg attattccaa atcaaacaaa tcgttcctac aactgaagaa
     8281 caaattttaa aaaatccttt agggattttt attacagatc ttaattttgc aaaaatttta
     8341 taaggagtta aatatgaaaa agtttatttt taatacaaat acagccacaa gggaaatcca
     8401 ctacacccca acaagtgggg caaggctaaa aagccttgac tataattata caaaggagta
     8461 taattacaac tatgatgaat tttatggcat tcatcttagc tcctttaggg gcttagattt
     8521 tcgccacaag ggtgatgacc ttgtggcaaa caccccaaaa aattatactc aaaaactcaa
     8581 aaaactttct ttaattgcgt ctttactttt atttattggt agtagtgtat atgctaacaa
     8641 tctaaatgaa agagattttg caaatctcac accaaaagaa aaaaaagatt tagcaatagc
     8701 tcaaaaatgg ataaattcaa aaaccactac tatacaagga aataatggag aagtaatttt
     8761 tctttatggc gaagctatgc caagcattgt aactgcacct ttaagactta ctgatatttc
     8821 tttagaacct ggagaagtga ttaaagatgt tcaaataggc gatagtataa gatgggctat
     8881 atctttaagt attagcgggg aagaacctta tttagtttct catattatcg ttaaacctac
     8941 ggataaaaac ctacaaacaa ccatgaacat aatgacaaat aaacgagttt atcgcttaaa
     9001 tttaatatct gaagctaaga aatttatgcc tgcagtttca ttcaattata caaatcaaat
     9061 cattcataca ctagaagatt ataaaaacca aatgaaagca aaatctgaag ctaaaaattt
     9121 ctataaaaca aaagatgatg aaattccaag caatattgaa aatttagact ttggttatag
     9181 tattgaaggt aatgcacctt ttaaaccttt aagaatttac aatgacggca taaaaactta
     9241 tattcaaatg ccaaaaaatt taaaattcta tgaagcaccc gcacttatgg ttttagattc
     9301 tagtaatgaa aaacaaattg taaattatcg cttaaaatat gatacattta ttgtagatag
     9361 actttttaat aaagcaattt tactttcaaa tgtaggctca aaacaagaaa aaattacaat
     9421 cacaaagcat tctaacaaag ccaatcaaga tatagtcaat aacgtgcttt acgatttatc
     9481 acttcaaaat aaaaataaaa aggataataa atgagaattt tatttttggc gttaatcgct
     9541 ttatttataa cttcatgtgc aaaagtcaat tcagaatatt ttacttctag cttttcggtt
     9601 aaagaaacaa aaataaatta cgacaaaatc gctgatgatt tttcgcaatt tatcatttcg
     9661 tattatttgc ctaacaaaac tacattttat ttcaatgata taaatgacaa taaagcattt
     9721 tcggattatt ttgtaaatac attaagaaat aaaggttatg caattagcaa cgatcattcg
     9781 agaaaaaatt taacctttct aagctatcag gtttcgcaaa ttgacaatga aaatgtaatt
     9841 gcaatattta atatcaatga aagtaaaatc aatgtgattt ataaaatcat tgaaaacaag
     9901 cttgtaaaaa taaatatgac aagttttaat tttactccgc aaaattaaag gttgaattat
     9961 gcttgaaatt aatacttcac caaataaatt tttaccaaaa aataataaaa gactttctaa
    10021 agtccctatt ataatattat ttactattgc tgtaatcgta ttatttagcg tattttatgt
    10081 agctttatca agaaaacaaa atttagaaaa gcaagctaca caaactgcac caaaagaaga
    10141 aacacaaagc acaagtaaaa ttgaaaatat tgcttcttat gttgatgaat tatcacaaac
    10201 taaacaaata aaagaacaaa actcaacctt acagcctgtt aataatacta tccctatcac
    10261 tcaacaagtt cagcaagaaa tcaagcctca acctatacaa acacctattc ttatgcaaaa
    10321 taatgaaata gatgaaagag aattaagatt aaaaaaagat atgcaactta aagctttaat
    10381 cagccaaact tctttaggga ttaaaagtga aattcaagaa aaatcaacaa taggtaatca
    10441 ttttacccct tctcaaaccg attaccctaa tattccaaat gatcaagtca atacaagtgc
    10501 aggattaggt ggattagata ccaatgcaaa taaagatgca caaggtcagc aatttttatc
    10561 acaaaaaaat gacaatgggt atttaaaaca ctcaaaacaa aaaccattaa gtccttatga
    10621 aattaaagca gggtggaaca ttcccgctgt tttaatcaca ggagttaatt ccgatttacc
    10681 aggtcaaata ttggcacaag taacacaaaa tgtttatgat acttcaacag gtaaatatct
    10741 tttaatccca caaggcacta aagttgtagg agcttattca agcaatatca tttatggaca
    10801 atcaaggctt ttagtagctt ggaataaact tatttttcca aatggagata cattaaatat
    10861 cgatagtatg caaggaactt cacaagatgg atatacagga tttgaagatg aagtagataa
    10921 tcattatttt agaatttttg gttctgcatt tttactttct tcaataactg caggaattgc
    10981 attatctgat aattctagca caaacggaga aaaagaaacc gcttcggata aggctatttc
    11041 ccaagcaatt caacaaatgg gacaagttgc aagtgagatg ataagaaaaa atatgaatgt
    11101 tagccctact ttaaaaattc gtcctggata taaatttaat atctttgtaa ctaaagatat
    11161 tattttagaa cctttggagc ttagataatg aataaattgt taaaagagcg tagaattatt
    11221 atttttggta atttattttg tatttttatt ttggtgtttt ttacttatat taattggaac
    11281 aatttgtcaa tgttaattcc tgcttggatt gttataagta ttttagaaat aattttaatg
    11341 attgcttatt ttgacaataa aaaaggcatt caaaattata aaaataatat tgaactttat
    11401 aaaaatttag caaaggattt aaacaatgat tgatattgct ttaattgaac aatgcaaaaa
    11461 tccaaatgta gaaacacaaa tcatacaaaa aattattcaa atagaaagca ataatcaaca
    11521 atttgcaatt aatattaata aaataggatc tttcattcca aaaacaaaag atgaagcaaa
    11581 aacactaacg caaagcttta tcaacaaagg ttatagcgtt gatattggct taatgcaatt
    11641 taattcaaat aatcttaaaa ctcctacatt taaaaattat agcattgatg atcttttaga
    11701 tccatgtaaa aatattaaag cgggtagtga tattttttat ttggcgtatg aaatgacaaa
    11761 tgaaaattta gcaaaggagg agcgtataaa tcaggcatta agtatttata atactggaga
    11821 tttaaaaaaa ggattttcta atggctatgt agctaaatac gattcaacgg caaaaatgat
    11881 agataactta gaagaaaaag caagaaaatc agatacaaga attaagattg cttataatct
    11941 tttcaatttg caaacacaaa aaaaggagta aaaatggaaa atgaaaattt ggaagagaat
    12001 aaacctacac aatttgatga taatgagcca agcttatttg ataacttaga agatgaggaa
    12061 caagataatg attaataata ttacaatagg cggaagatta acagctgacg ctgaattaag
    12121 acacagcaat caaggtagca taatatgcac ttttacttta gcaaataata gaaaatataa
    12181 agagatagag aattcaactt atatcgaagt atctcttttt ggttcttttg ctaatgccat
    12241 gcacccatat ttaaaaaaag gcatttcagt tgatgtggtt ggagaactaa ctcaagacac
    12301 ttgggagcat gaaggaaaaa tttactcaaa acaccgaata aaagcaaaag agatagattt
    12361 tagaacacca aaaaaagaaa aacaaacaat acctaatatt gaagaaggag aaaattatga
    12421 aggattttag agaattagaa acaataccaa atttcagcta tgaaattgat ccactaactg
    12481 ctgaagaatt aggtgcattt gaagaaaatg ctttaagtga agaagatgcc aaagaaggca
    12541 tagaagatca aggataactc tatgaaaaac aaagacttta tccaagaaac agctgataaa
    12601 attatagaaa gtttaaaaaa tggaactgca ccatggatta aaccttggaa aggtatcgat
    12661 ttagctaata acatgcctta taatcctatt acaaataagc cttataatgg cataaatagt
    12721 attaatttaa tgctacaaaa ttatagtgat cctagatggc ttacttataa acaagcacaa
    12781 agtattaatg cacaagttaa aaagggtgaa aaatctactt taattcaata ttggcaattt
    12841 agcgaaatag ttgataaatt agatgaagaa ggcaatgtta tcacaaatga aaaaggagaa
    12901 gtagaacaaa tcgaaataaa attagaaaat cctaaagtat ttttcgctta tgtttttaac
    12961 gctgaacaaa tcgaaaatat gccaaaacta gaaccaaagc aagaaattga taattttcaa
    13021 ataattaaag aggcacaaaa aattttagac gattcaaaag cgattattca tcatcaagga
    13081 aatagagctt tttataatgc tacaaatgat actattacac tgccaccaaa agaaaatttt
    13141 ttaaatgaaa gtgcttatta cgcaactgct ttacatgaat taggacattg gagcggtcat
    13201 tcaagtagat tagatagaga tttaaacaat ccttttggtt ctaaagaata tgccaaagaa
    13261 gaattaagag ccgaaattgc aagttttcta tttaatggta aaattggttt agattatgat
    13321 ccaggacaac atttatcata tattgatagt tgggtgcaaa ttttagaaga taaaccgaat
    13381 gaaattttta aagctacctc cgacgctaca aagattgtta attttattga aagtctttct
    13441 ttggagcaaa aacaaaaaat agagcttgaa aactcaaata cacagaaaca agagcttaca
    13501 caagataagg agttaaactt ggtaactaaa aaaacttacc tatatgttcc atttgaagag
    13561 aaagaaagtg ctaaaaaagc aggtgcaaaa tgggataagg aagctaaaat gtggtatgct
    13621 cctaagggaa cagatctgaa aaatttcaat caatggttaa atcaatcatc attaacacca
    13681 aactatagca atacgcatga tgaatttaaa gcttttttag aaaaatatga actcaacatt
    13741 gaaggacaac ctataatgga cggcaaactt catcgagtta gtgttatagg agataaagga
    13801 agagaaaaaa gcggagctta tgtaggattt ttaaacggac accctgcggg atttgtgcaa
    13861 aattacaaaa ctggtattaa agaaaattgg aaaagtgcta attcttttga aaatactaaa
    13921 aatcaagaaa taaactttaa aaatgcaata gaacataata aagcaatgaa agaagcaaga
    13981 gaaaaagaac ttgcacaagc ttatgaaaaa acagctttaa aacttgaaga agaatataat
    14041 aatgcaaaat gggctaattc agaacaccct tatttaaaag aaaaaggatt tgataaaaat
    14101 ttctatctta agcaagataa aaacggtaat ttattaattc ctttaagaga tattgaaggc
    14161 aaatattggg ctacacaaag gattttcgct aatggtgata aaatgatagg agctacacgc
    14221 acagcagaag aaaaagagca aggtatagaa taccctgcaa aaaagcaagg caattttttc
    14281 ttacttggtg caaaaaattt agataatgtc aatgaagttt atatttgcga aggatttgca
    14341 acaagtgcta gtgtttatga agctacaaaa tcacctacta taatgggagt agatgctggg
    14401 aatttagaaa ttatcgtaac aagtataaaa gaaaaatatc ctaaaatgaa tattattatt
    14461 gcaggggata atgatataaa aaaagaatta aacggcaata agaatgtagg caaggaaaca
    14521 gctttaggca tacaaaaaaa atatcccgaa ataaaagttg tattaccaaa ttttacaaat
    14581 gaagaatcac aaaaaggctt aagcgatttt aatgatttaa tgaaaagcag gggattagaa
    14641 gaaattaaaa aacaattaaa agaacaaatt gcaaagcaac taatggctga aaaagctact
    14701 actaaagcac tggataagaa taaaggcatt aataaagaaa tttcaactaa aaaagatata
    14761 gggatttctt tatgaaaaaa caaactaatc aagctttagt ttatatgtta gggcttattg
    14821 gaattttcct aacatttact attattagcc aaattgcaac gcaatattta gcaaaatcgt
    14881 ttaattattc tcctagttta ggagaaacat tattttatgg tttttataat ccatttaaat
    14941 ggatttcttg gagctatgtt tattattctt tttatcctga ttttttcaaa aaatttttta
    15001 tatcaatgtt tgcgggtatt gcattttgtt ttatcgtttt tattttggtg aaactcgcct
    15061 ttttgcgtaa agcaaaagca atagaaaatc ttcatggatc ggcacattgg gctactttag
    15121 aagaagtcaa agaaagtggc gtatttgata aagataaagg tgtgtatatc ggtggttttg
    15181 agcacaaaaa aacacttcat tatttaagac acgatggtcc tgaacatata atgctttttg
    15241 cacctacaag aagtggtaaa ggtgtaagct tacttttacc tacactttta tcttgggaag
    15301 aatctgctct tatattcgac ataaaaggcg agttatgggc tttaactgcg ggttggagac
    15361 aaaaatacgc caaaaataaa gtattaaaat tagatcctac ttgtttagat gatagtgccg
    15421 taaaatttaa tattttagaa gaaataagat tagaaacaat gcacgagatt aaagacactc
    15481 aaaatattgc aattaatctc attttcaaag gcgaaactcc ccctactaat cctactcaag
    15541 gtagcacatc ttattttaaa agtgaggcgg gaaatttctt agtttcaatt atactttatg
    15601 ctttacattt aaaaaaatat cgaggtgaaa ataccccaaa tctaactgat atttataaat
    15661 tcatcaatga tccaaatcaa agtatcgatg agctattaga agaaatggtt gaatgcgata
    15721 tttccacgat ggataaaaac acccaagaaa ttatacaaag catatcaaga tcaatgaaaa
    15781 ataaagccac tcaagaatta agcggtgtaa taggaacagc ttcggaaact ttaaatcttt
    15841 atattgatcc tatcttagca aagaatacag caaaaagcga tttcaaaatc aaagatttaa
    15901 tgaatcatga taaccctgtt agtctttatt tgatcattcc accaggacaa aaagatagac
    15961 tgcgtccttt ttttaattta ctcattaatc aaatctttag aactttaact gatgattctt
    16021 taagtttcaa aaatggagaa aatgtcaaaa gatacaaaca taaaatgtta gtgttagctg
    16081 atgagctaac tatgtttgga aaattaggag tgcttgaaga aaatcttgct tatatggcag
    16141 gatatggaat gaagttttac ggatctattc aagatataca acaactttat tctatttatg
    16201 gtgaaaaaga aacaattatt tcaaactgcc acataagaat agcctttgca ccaaataaaa
    16261 tcgaaactgc aaaactctta tctgaaatgg gcggaattac aactattatt aaaaaatctc
    16321 ttacaagttc tggaaaaaga actgcagtaa tgcttggcaa tgttagtgaa actatacaag
    16381 aagtgcaacg ccctttaatt acagctgatg agtgtatgcg attgccttca gctaaaaaag
    16441 ataaagatga taagataatc gctcctggtg atatgttaat ttttatagca ggtcaagcac
    16501 ctatttatgg aaaacaaatt ttatacttta aagatcccgc attctctgca aggtcaaaag
    16561 taatgctgga taaacaaatc agcgatattt tatgatacaa aaggaataaa aatggcaaaa
    16621 atacattttg ttttaaatgg caaaggtggt ataggtaaaa gttttataag ctctttgcta
    16681 tgtcaatatt ttttagataa aggagaaagt atcgtcgcta ttgatacaga tcctaacaat
    16741 acaactttac tcaatgtaaa agctttaaaa gctaaattct tacaacttat tgatgatgaa
    16801 ggaaaatttg atgtccgtgc ctttgataaa attgtagaat tagcttttga aaaaaaggct
    16861 aaaaactata ttattgatag cggtgcaact acttttatac ctttaatcga ttatcttaaa
    16921 gaaaatgaag ttttagactt tttaacaagc aatagtttag aagtttttat gcatgttccg
    16981 attgtaggcg gacaagcaag agatgatacc attttgggat taacacaact cacacaagct
    17041 tttaattgct cttttgtggt gtgggttaat gaatatcacg gatcaattat caaagatgat
    17101 ttagagtttg aagaaactaa agaatatcaa gctatcaaag aaaaaatcaa agctattatt
    17161 tatcttaatg ctttaagtaa agatactttc ggcaaagatt tgttagaact cacttccaag
    17221 aatttaactt ttggtgaagc tatgcaagat aaaaactttt ctttaatgtc gaaacaaagg
    17281 cttaaaattt tcaaagataa agcatttatc caaataggaa atatattata ataatatctt
    17341 tatgatatta ttataatatt tatttaattt aatattaata ttattatgat ataattatat
    17401 taattattat aaaggagtaa aaatgcaaaa acaatatccc gaagtgcata gcttagaaga
    17461 aagtcttgcg atacttaaaa aatataaaga tgatttaact aaagagcaat atgaaggtat
    17521 taaatctgtt atttgcggac acgctattga agatatgttt gcaaatgaaa aagatgttat
    17581 cgatatgata aaaattgcaa aagatgaagc aaatgccgat gaaataatcg ccgaatataa
    17641 aagagaatgg ggagtaaatg attgataaag ttttgaaatt tttagatgat ggtattccta
    17701 aaaatgattt tgacagacaa cttttagctt ctaatttagt aggcgcaaca aatttaatag
    17761 agttaaataa acgagaaaga gaaattacat taaaaaaaca attaaaacta caactcaatc
    17821 ccattaaagg caatttcgat tatcagcatt taaaagatat acataaagca ctttttgaag
    17881 atgtttatac ttgggcagga caagatagaa tgcaaatggg actaaaagaa aaatttgcaa
    17941 aatatgcacc caatggagca attattaatt ttgttcctgg aaaagagtta gataaatact
    18001 ctaaaataat ttttgatgaa cttgcaaaaa ataactatct aaaaaactcc aaagatctaa
    18061 atcattttgc aaaaaattta gcaaaattta tgggcgaaat caatgcttta caccctttta
    18121 gagaaggtaa cggcagaact caaagaatat ttttaaacga gttggctaaa aatgcaggtt
    18181 ataaacttga tttaaattta atttctaagc ataaaatgat acatgcttgt gcagaagctt
    18241 cacaattaaa acctggaaga ttggaggctt taattaaaga caatctaaaa aactttaaac
    18301 aaaatttaga tttggagcaa aataaaggaa tatcattata atgctatgag aaaaactatt
    18361 gcaatatttg ccttttcctt tgtatttctt ctaatcctct catatcttat tttttatttt
    18421 ggtggctttc attttaacca tacaagatca atgcctttgg gcttatataa agaaattagc
    18481 tcttccattt ttaacaaaaa cgatattgtg cttttaaaaa taccacaaaa gaaagaaatt
    18541 ttattaaaaa agattgttgc aataaatgga gattttgtag aagttaatag acaaggcgtg
    18601 tttattaata aaacacttat gcctgattct aaaatttttt catttgatag cgaaggtaat
    18661 ccactagaat ttaaaccttt taaatgcaag ttaaaagaaa atgaactttt tgttatgggt
    18721 gaaaatataa aaagttatga tagtagatat tttggagtaa taaatatact tcaaaatgaa
    18781 gtaaaaaaag ttaagtcaat aatattattt
//
LOCUS       DAPIWQ010000015        18038 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.015, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000015 DAPIWQ010000000
VERSION     DAPIWQ010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18038)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18038)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18038
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.015"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..460)
                     /locus_tag="RJ267_000399"
     CDS             complement(<1..460)
                     /locus_tag="RJ267_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HDV7388282.1"
                     /translation="MIRSLYYLKAMGFNFVDTHTNHFEQVQNFQELKQLVSSCTLCQF
                     SKTRKFSLMEPKIKNAKLLILDVFGQKSENESGILLNSKKGEKLKHYIYQILGLCDED
                     FYFSYLFKCFCNGKFDDFSLQSCLPFFWNELKLIQPAFLLCLGEYTFKSLG"
     gene            complement(457..936)
                     /locus_tag="RJ267_000400"
     CDS             complement(457..936)
                     /locus_tag="RJ267_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7388283.1"
                     /translation="MSEFKIIDLRQEDLDILQEMIIEFAKYEDMLDFLQCTKEKLEHS
                     LLKNKFARAFLLKENEKTIGYMIYFYTFSSFWGSGGIYLEDIYIREDFRKKGYGKAVF
                     KFLGEICKKENLKRLDWVCLNDNILGINFYESLNAKHLKQWRNYRLSGENLEKLCDL"
     gene            1067..1201
                     /gene="rpmH"
                     /locus_tag="RJ267_000401"
     CDS             1067..1201
                     /gene="rpmH"
                     /locus_tag="RJ267_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HDV7388284.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            1198..1524
                     /gene="rnpA"
                     /locus_tag="RJ267_000402"
     CDS             1198..1524
                     /gene="rnpA"
                     /locus_tag="RJ267_000402"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HDV7388285.1"
                     /translation="MKNFDKFSTNEEFSSVYKVGKKWHCEGVIIFYLNSYEKKIAVVA
                     SKKVGKAVVRNRSKRILRALFAKFERYLQDGKYIFVAKNEITELSFSRLEKNLKWGLK
                     KLECFK"
     gene            1521..1862
                     /gene="yidD"
                     /locus_tag="RJ267_000403"
     CDS             1521..1862
                     /gene="yidD"
                     /locus_tag="RJ267_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HDV7388286.1"
                     /translation="MICLKILRFYQKFLSPLKPAACRYYPSCSEYALWQFQKKNFFLA
                     FFSTFFRILRCNPFFKGGFDYPRVSKNFYPINLCFKPIFLAEKQLCFLYIPYKNKSFY
                     LIKIIFKRTNQ"
     gene            1859..3445
                     /gene="yidC"
                     /locus_tag="RJ267_000404"
     CDS             1859..3445
                     /gene="yidC"
                     /locus_tag="RJ267_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HDV7388287.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVIYDYFFIPKQPLKIEQNIT
                     QKNQQNTSINNTPNIQNATTNTPSAALVSQDSVISKVQSKHFEAQIDSFGRISAFYLK
                     DRKYQNEKGEFINLVSKENSPYPLEMRFSDPSINSEAFKIPYVANASNLFVDENGSQV
                     LKLTQNLSGLKIEKDITFYPKGNYEIEVKLSKNANYFISPGYRPNIAVDSYTVHGALV
                     MDNKETIETYKDGDVEKDESANNVVMTSAFDRYYATFFYNFDKPLNVAISKDANQNPI
                     VFAYSDNEFKAGGYIGSKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLHQYIG
                     NWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRERYKGDPQKMNMHMME
                     LYKKHGANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPYFILP
                     ILMGATMFLQQLITPMTIQDPMQAKIMKFLPVIFTFFFITFPAGLTLYWFVNNLCSLV
                     QQWVINKIFAKEHHKKTSGA"
     gene            3449..4267
                     /locus_tag="RJ267_000405"
     CDS             3449..4267
                     /locus_tag="RJ267_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HDV7388288.1"
                     /translation="MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRK
                     KAIIEAKAKKRILKKNPKKEFTSSKNHKPETHEPKQENKIEIKNEKNKSQKEKYTVKS
                     DEIFDSFHRESKGVRNTQDILDEIRIQLVKLLESSQFKIELSELRMYDEDCVLIRLDG
                     EDAALMIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQSVIEK
                     IKIHGRGQTKPLDGVLIKIALEQLRAEFPDKYVGIKQNNDQRFVVINDFFKKDE"
     gene            4260..5588
                     /gene="mnmE"
                     /locus_tag="RJ267_000406"
     CDS             4260..5588
                     /gene="mnmE"
                     /locus_tag="RJ267_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HDV7388289.1"
                     /translation="MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRH
                     ATFTKLFNQNNEIIDEAIMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSLGAR
                     LALAGEFSKRACLNGKMTPLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEENFKLGTHLLRIIDTAGIRESK
                     DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL
                     ENVFKNTQNKNFIKLSAQKDITLLKEELQNYLNSFDSEGIMVSSLDLINACKISSEAI
                     FRAKGLLEESSLEFFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK"
     gene            5599..7785
                     /gene="purL"
                     /locus_tag="RJ267_000407"
     CDS             5599..7785
                     /gene="purL"
                     /locus_tag="RJ267_000407"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HDV7388290.1"
                     /translation="MDKETIKAHKISDEEYAQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGDIHDEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEGVGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMAGRSGSGMKLYLDKTPMRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWD
                     LDAVVMGEVTNTGKMELFWHDELVGLIPIEPLSEKAPILSRPTSEPKYLSEIKNYKFE
                     LKSSVQELFIQMLQNENINNKAFIYDQFDSSVQTNTIKADGRLGASVIRIKENGASVA
                     MAIECNSRLNYVNSKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIYPSPTIVSVGVLEDANKTLKASFEK
                     ENLSVYLLGESLGEFSGSMVMKIQDKKVSGSLKELDYKAELALWDLLYKANQNSLLEC
                     ANSVGIGGIAMTLAKMFAISSVGANLTSDFDDEKMIFDESASRAIIGLSKENEEAFLN
                     LAKEFGVKAYKLGVSTSQKHFKLDSIELSKAELDKLYFESFKEQIQ"
     gene            7782..8552
                     /locus_tag="RJ267_000408"
     CDS             7782..8552
                     /locus_tag="RJ267_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family molecular chaperone"
                     /protein_id="HDV7388291.1"
                     /translation="MTLVLIILVVLVFYWYYKTWGKQDFLNSATRGAKGFAKGFARGV
                     MEERMDEFKRRMNYYVIALLAKIAKSDGRVSENEAEMIKDLLDANAKDEKERAFLKAS
                     FNEHKENLSDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALIDADFNAKKREILEQIA
                     KAFDIAKSELDAFIASLSNLKSTKKELSLDEAFAILELPNNADLNAVKKQYRNLAKKY
                     HPDILNANNVSEEELKIGVEKFQKINEAYEKVKKHLER"
     gene            8555..10087
                     /gene="purH"
                     /locus_tag="RJ267_000409"
     CDS             8555..10087
                     /gene="purH"
                     /locus_tag="RJ267_000409"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HDV7388292.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLGFEILSTGGTFKLLKENGIKV
                     IEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQND
                     ENFRLNLMIKAYEHTANYDAYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKG
                     ALYEFDAFFSANFKALKGEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAVF
                     EGKKRIKIFTQESPFLIRSFDKYDFKHIDGGFVYQNSDEVGEDELKNAKLMSQREASK
                     EELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIAKAKEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMALYFTGVRHF
                     LH"
     gene            10186..10914
                     /locus_tag="RJ267_000410"
     CDS             10186..10914
                     /locus_tag="RJ267_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388293.1"
                     /translation="MFKTIGFKVSAAIFVVLLISFIVMQVILNLDFKNTANKMSRANL
                     DTVSTSVFQTMRMAMNLGDPEKIKEAIEDAKSIEGISDIKIYPSKDTIDLFEMKAPQI
                     SNDKRIIEQFSNPKIQALEENVNGVVHLRLIRPLIADESCVACHANANVGSVIGVMDI
                     SHSLEGVQKDISKTSQSYIVIFTIALIFTLCVVLLMLKVVVGKPVLELLNHAKELAQG
                     SGNLKARISVKGQDEIALACGYIN"
     gene            11104..11778
                     /locus_tag="RJ267_000411"
     CDS             11104..11778
                     /locus_tag="RJ267_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002930723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HDV7388294.1"
                     /translation="MSNKANSANEKSFLLLEQMLKSLFNVANKVSTVSQNENELAKKV
                     ENMVNQAGNIQKATQMMDEIADKTNLLSLNAGIEAARAGAFGRGFSVIAEDVRQLAQN
                     SEEFLGNVAQITKELLQSINEVSAELKKNAQSVQALNDDTALLVDDANEVKLCNEDAR
                     ALVTQCTEKIKISQENIQNLLSRMQENVEVSEKNEEISKILLQVADELKIVCHNLESE
                     LNQFQI"
     gene            11788..12222
                     /locus_tag="RJ267_000412"
     CDS             11788..12222
                     /locus_tag="RJ267_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HDV7388295.1"
                     /translation="MKKMLQIALAATFFAGCASTSLTSSTSKGNNELVQNQLFKIEKI
                     IVNGKTFDPKNAEESPNISFENNKFYGYSGCNRFFGSYQTKADTLQIEGDRVASTQML
                     CHPMDVMDFENSFLSNFKGTFKISNENGKLVLSNDEMKIFFK"
     gene            12321..13298
                     /locus_tag="RJ267_000413"
     CDS             12321..13298
                     /locus_tag="RJ267_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agamatine deiminase"
                     /protein_id="HDV7388296.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKVVS
                     EFQKVLLIAPKQSDFENFKDIKNVEFFKCDTNDTWIRDFGAIDIVENGRLKALDFTFN
                     AWGNKFQSELDNAVNSKLFKEKFKEELKKVDFILEGGSIDFNGEGVMLTSSHCLLNEN
                     RNSHLNKTQIDTKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICE
                     DEEDEHYLPLQKMKEELKKTGFDLLELPIPKPLYYEERRLGATYANFVFINNALIVPF
                     YKDKNDEIIAKRLSKALPNHKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            13295..14182
                     /locus_tag="RJ267_000414"
     CDS             13295..14182
                     /locus_tag="RJ267_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HDV7388297.1"
                     /translation="MSLQKKATLVASLCAIVLALVKFIVGLTSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYY
                     KEEIKDLNSSIYVMIFALIMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTL
                     GALVLIYFTNLHIIDAIFGIVISLYTAFSAFKIIKKALAFLMDEALPKEQVDKICTLI
                     SNNPEIISYHELKTRKTPSCNYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKW
                     DIQIHLDPYDDAEQERQRQ"
     gene            14179..15051
                     /locus_tag="RJ267_000415"
     CDS             14179..15051
                     /locus_tag="RJ267_000415"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HDV7388298.1"
                     /translation="MKIALIQQKFHLNKEQTIKKTCEFIEEASKQGAELVCLGELHQS
                     EYFCQSENVDFFDYANDYEKDVKFWANIARKNQIVLIASLFEKRSAGLYHNTAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLICWDQWYPEAARI
                     MALKGAEILIYPTAIGWFDKDKDEEKQRQLNAWLGVQKGHAIANGLYVVAINRVGFEK
                     DVSGVEEGIRFWGNSFVFGPQGEELCLLDSQNECVKIIEIDKKRSENVRRWWPFLRDR
                     RIEYFTDLTKRFID"
     gene            complement(15063..16409)
                     /locus_tag="RJ267_000416"
     CDS             complement(15063..16409)
                     /locus_tag="RJ267_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7388299.1"
                     /translation="MKSCLYFTFIVLFLTACSTKNLTSLHRENLEQKNENQHYVKLEY
                     EQNVNILPQFAYDINFDAKRYKKYFFNPWHDSFKNYKGQNIFWSFPLYLNSKNTYYFF
                     NKQIIPLSWFKNAINNANIQEFGKLNQKALIIQNTIIKNLPTQRAILKNPFFENEGIP
                     FDYASDGILNTGAPVLISHFSKDKRYAFVLGEAGFGFVESKNLEFFSNDRAKIYENLN
                     FITPLKEKFAIYSEDGKFLFESRIGAIYPYYKEDKNYFYGKIGSKKYKISKKDVSKFP
                     LQFNDKNLKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLPRNSAAQKNSFN
                     HFDISTLSNSQKKDFLNRFGKAYLSLLYLPGHIMLYAGQITDNNIAIHNIWGLRKDAT
                     QRLLISSSVITSLEIGKNEILEDNLLLSRLKEISFINLNEQEKEQIKSYLENIQNK"
     gene            16458..17801
                     /gene="pif1"
                     /locus_tag="RJ267_000417"
     CDS             16458..17801
                     /gene="pif1"
                     /locus_tag="RJ267_000417"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HDV7388300.1"
                     /translation="MFDKLEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIA
                     LGSSALSAFNIGGVTLHSFFCLGYCDDMMKLSVLDRNQKQKEKLTKLKELLKTIELII
                     IDEISMVSANVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYAFSS
                     FFWQDLNFKNIKLSQPKRTQNMEFYNHLSLIRQGFLDEKILSFFESLRIDYKELENLE
                     DDYTLLCGINKKVNNINQEKLSKLGTPLVCFKAQVKKEDKRIKDEELDSWIRSLNILE
                     ELNIKIGARIIFCVNNWDKNYYNGEQGIIEDILYEEEKIYISIIKNNGMKILLEPYTF
                     FMEELEQSGKDFVVNILASVTQFPIKLAYAITIHKSQGMSIEKLVCDIDHIFENGQLY
                     VALSRATNPNTLKIYSTKKINFGFYFANILKIDSNVIEFYKKHNFLDLEIQEQII"
     gene            17811..>18038
                     /locus_tag="RJ267_000418"
     CDS             17811..>18038
                     /locus_tag="RJ267_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388301.1"
                     /translation="MKKIFLSVFLVLSLNAQNLEIDKIRTDLYSKSGANVLKKVEISL
                     EFDGNNLKENENKLIDAVNTVISGFFYEDIFT"
BASE COUNT         6508 a         2216 c         3265 g         6049 t
ORIGIN      
        1 atcccaagct tttaaatgta tattctccta gacaaagtaa aaaagcaggt tgaatcagtt
       61 ttagttcgtt ccagaaaaat ggtaagcaag attgtagcga aaaatcatca aattttccat
      121 tacaaaaaca tttaaataaa taagaaaaat aaaaatcttc atcgcaaagc cctaaaattt
      181 gataaatata gtgttttaat ttttcacctt tttttgaatt aagtaaaatt ccgctttcat
      241 tttcactctt ttgcccaaaa acatcaagaa ttagcaattt ggcatttttt atcttaggct
      301 ccataagact aaattttctt gttttggaaa attggcataa ggtgcaagat gaaacaagtt
      361 gttttaattc ttgaaaattt tgtacttgtt caaagtggtt tgtatgtgta tcaacaaagt
      421 taaatcccat agcttttaaa taataaagac ttcttatcat aaatcacata atttttctaa
      481 attttctcca cttagacgat aatttctcca ttgtttaaga tgtttagcgt ttaaactttc
      541 ataaaaatta atacctaaaa tattatcatt taagcaaacc cagtcgagtc tttttaaatt
      601 ttcttttttg caaatttctc ctaaaaattt aaaaacagct tttccataac cttttttacg
      661 aaaatcttct cgtatataaa tatcttcaag ataaattcca ccgctgcccc aaaaagacga
      721 aaaagtataa aaataaatca tatagcctat agttttttca ttttctttta acaaaaaagc
      781 acgagcaaat ttatttttta gtaaagaatg ttccagtttt tctttcgtgc attgaagaaa
      841 atctaacata tcttcgtatt ttgcaaattc tatgatcatt tcttgtaaaa tatctaaatc
      901 ttcttgtctt aaatcaataa ttttaaattc tgacattttt aaccttttaa aaataatttc
      961 aaaatttatc aaaagaattt aaaaattact cttaatcaaa agcaatttat aagtaagatt
     1021 aagataaaat acaagtttat tttataattt tttaaggaaa aatcaaatga aaagaactta
     1081 tcagccgcat ggtactccaa gaaaacgcac tcatggtttc cgtgttcgta tgaaaactaa
     1141 aaatggtcgc aaagtgatca atgcaagacg cgctaaaggt agaaaaagac ttgctgtgtg
     1201 aaaaattttg ataaatttag cacaaacgag gaattttcat ctgtatataa agtaggcaaa
     1261 aaatggcatt gcgaaggtgt gatcattttt tatctgaata gttatgaaaa aaaaatagca
     1321 gttgttgcta gtaaaaaagt tggaaaagca gtggttagaa atcgttcaaa acgaatttta
     1381 agagctttgt ttgctaagtt tgaaagatat cttcaagatg gcaaatatat ttttgtagct
     1441 aaaaatgaaa tcactgaact ttctttttct aggttagaaa aaaatctaaa atggggattg
     1501 aaaaaactag aatgtttcaa atgatatgcc taaaaatact ccgtttttat cagaaattct
     1561 taagcccttt aaaacccgct gcttgtaggt attatcctag ttgttctgag tatgcgcttt
     1621 ggcagtttca aaaaaagaat ttttttctag cttttttttc tacttttttt agaattttaa
     1681 gatgcaaccc tttttttaaa gggggttttg attatcctag agtttctaaa aatttttatc
     1741 ctataaattt atgttttaag cctatatttt tagcagaaaa acaactttgt tttttatata
     1801 taccttataa aaataaaagt ttttatctta taaaaatcat ctttaaaagg acaaatcagt
     1861 gaataattca aataatattt ttcagcaaaa gcgtatactt ttagctgttg tgatttcttt
     1921 tttatttttt gttatttatg attatttttt cattccaaag caacctttaa aaatagaaca
     1981 aaacattaca caaaaaaatc aacaaaacac aagcataaat aacactccta atatacaaaa
     2041 tgccaccaca aatactccaa gtgcggcttt agtttcgcaa gatagtgtga tatctaaggt
     2101 tcaaagcaag cattttgaag cacaaattga ctcttttggt agaatttctg ctttttattt
     2161 aaaagataga aaataccaaa atgagaaagg agaatttata aatcttgtta gcaaggaaaa
     2221 tagtccttat cctttagaaa tgcgttttag tgatccaagt attaactcag aggcttttaa
     2281 aattccttat gttgctaacg ctagcaatct ttttgttgat gaaaatggaa gtcaagtttt
     2341 aaaactcact caaaatcttt ctggattgaa aatcgaaaaa gatattactt tttatccaaa
     2401 aggaaattat gagatagaag ttaaactcag caagaatgca aattatttta taagtccagg
     2461 atatcgtcca aatattgccg tagatagtta tacagttcat ggtgctttgg taatggataa
     2521 taaagaaacc atcgaaactt ataaagatgg agatgtagaa aaggatgaaa gtgctaataa
     2581 tgtcgtaatg acttcggctt ttgatagata ctatgcaact ttcttttata attttgataa
     2641 acctttaaat gtggcaatca gcaaggatgc taatcaaaac cctatagttt ttgcttatag
     2701 tgataatgaa tttaaagcag ggggctatat aggctctaaa gaacatgtga ttttaagaag
     2761 tatagatcca cgccttgaag cagttgttga atatggttgg tttactttta ttgctaagcc
     2821 tatgtttgag tttttgaatt tcttgcatca gtatatagga aattggggtt gggctatcgt
     2881 tgtgatgact ttaattgtgc gtattatttt attcccgcta acttataagt ctatgatttc
     2941 tatgaataaa cttaaagatc ttgctcctaa aatgaaagat attagagagc gttataaagg
     3001 cgatccacaa aaaatgaata tgcacatgat ggagctttat aaaaaacatg gtgcaaatcc
     3061 tatgagtggt tgtttgccta tacttttaca aattcctatt ttctttgcta tttatcgcgt
     3121 tttgcttaat gctattgagc taaaagcagc tccttgggcg ttttggatac atgatttatc
     3181 ggtaatggat ccttatttta ttttgcctat tttaatgggt gcaacgatgt ttttacaaca
     3241 gcttattaca cctatgacta tacaagatcc tatgcaagct aagattatga aatttttacc
     3301 agtgattttt acttttttct ttatcacttt cccagcagga cttacgcttt attggtttgt
     3361 aaataacctt tgttctttgg ttcaacaatg ggttatcaat aaaatatttg ctaaagaaca
     3421 tcacaaaaaa acaagcggag catgaaaaat gaaaatcgaa gccattgatc ttcaaagtgc
     3481 cttaacagaa gcttcaagaa gtttagaatg ttctgtgatg gacttagaat atgagattat
     3541 tcagcatcca agaaaaggtt tttttggatt tggaagaaaa aaggcaatta tagaggctaa
     3601 agcaaaaaaa aggattttga aaaaaaatcc taaaaaagaa tttacaagtt caaaaaatca
     3661 caaaccagaa acacatgagc caaaacaaga aaacaagatt gaaataaaaa atgaaaaaaa
     3721 taaaagtcaa aaagaaaaat acacagtaaa aagtgatgaa atttttgata gttttcatcg
     3781 agaaagcaaa ggagtgcgta atactcagga tattttagat gagattcgta ttcagcttgt
     3841 aaaactttta gaaagctccc agtttaaaat agagcttagt gaacttagaa tgtatgatga
     3901 agattgtgtt ttgattcgat tggatgggga agatgctgct ttgatgatag gcaaagaagc
     3961 acatcgttac aaggctattt cttatctttt gcataattgg atcaatttaa aatataatct
     4021 tttagtgcgc cttgagatcg ctcaattttt agaaaatcaa attcaaggta tgcagcttta
     4081 tttacaaagc gtgattgaaa aaattaaaat tcatggacgc ggacaaacca aacctttaga
     4141 tggggttttg ataaaaatcg ctttagagca gttaagagct gaatttccag ataagtatgt
     4201 aggaattaag caaaataatg atcaaagatt tgttgtaata aacgactttt tcaaaaaaga
     4261 tgagtgatac tatagcggct attgccacag ctcatggtgt gggttcgatt tctattgtaa
     4321 gattaagcgg tgaaagggct ttagaatttg ccttaaagct tagccacaaa accaaactta
     4381 ccccgcgcca tgctactttt acaaaacttt ttaatcaaaa taatgaaatt atcgatgaag
     4441 ctataatgat atattttaaa gccccttata gttttacagg ggaagatata gtagagtttc
     4501 aaactcatgg aggatttagt gtgagtgaag ttttactcga agaacttgtg agtttaggag
     4561 caagacttgc tttagcaggg gaatttagca aaagagcgtg tttaaatggc aaaatgactc
     4621 ctttaaaagc tttaaatata caagatctca tactttcaaa atctgcactt gcagctaaaa
     4681 ttatagcacg caacatgcaa ggaaacttag gagaactttt agaaaaaatt cgcacagatt
     4741 tggttaaaac cttggctttt gtagaaacta gcattgatta tgctgatgat gatttacctt
     4801 ctgatttatt agagcaaatt tctactatgt gtgaagaaaa ttctaaaatt ttaaaagaaa
     4861 tttatacgct ttctcaaagc aaaaaaggac tcatagaagg ttttaaaatc gctattgtag
     4921 gtaagccaaa tgtaggcaaa tcttcgcttt taaatgcctt gctttcttat gaaagagcta
     4981 ttgtttcaga tatagcaggc accactcgtg atactataga agagaacttt aaattaggaa
     5041 cgcatttatt acgcattata gatacagcgg gtattaggga aagtaaagat gttatagaac
     5101 aaatcggcgt agctttaagt aaaaaaagtt tagaagatgc agatattatt ttggcagtct
     5161 ttgatgcttc aagagtgcaa gataaagaag atgagaaaat ttttgactta ttagcaaata
     5221 ctgataaaaa aatcttttgg attttaaata aaagtgattt agaaaatgtt ttcaaaaata
     5281 ctcaaaataa aaattttatc aagcttagtg ctcaaaaaga cattactttg ttaaaagaag
     5341 aattgcaaaa ttatcttaat tcttttgata gcgaaggtat tatggtaagt tctttagatc
     5401 ttattaatgc ttgtaaaatt tcaagtgaag cgatttttag agctaagggg cttttagagg
     5461 aaagttcttt agagtttttt gcttttgagc ttaatttagc tattaatgaa cttgcaagat
     5521 ttaccaaaga ttttcaaaga gatgaaattt tagacgaaat gtttggtaat ttttgtttag
     5581 gaaaatgaaa ggatagaaat ggataaagaa accataaaag cacataaaat cagcgatgaa
     5641 gaatatgcac aaattttaga aattttagga cgtgagccaa atttattaga acttggggtt
     5701 atttctgcga tgtggagtga gcattgctct tataaatcca gtaaaaaata tcttaatggt
     5761 tttccaacta aagcaccttg ggtgattcaa ggtccaggtg aaaacgcagg ggttattgat
     5821 atcgggcaag gtatggcagc ggtttttaaa gtggaaagtc acaatcaccc tagttttatc
     5881 gaaccttttg caggtgcggc tacaggagta gggggaattt tgcgtgatgt ttttactatg
     5941 ggtgcaagag tggttgcggg gctaaattct ttaaaatttg gcgatattca tgatgaaaaa
     6001 tgcggcaaac atcaaaaata ccttgttaaa ggcgtggtaa atggaatttc tcattatgga
     6061 aattgcatgg gtgtgccaac tataggcgga gaatgtgctt ttgatgagtg ttttaatgga
     6121 aatatcttag ttaatgcctt tgctttaggg gtttgtaaaa gtgaagatat cttttatgct
     6181 aaggctgaag gtgtaggaaa tcctgtgatt tatgtgggtt caaaaacagg gcgtgatgga
     6241 cttggtggag cggttatggc aagtgatagc ttcaatgaag aaagcaaatc tttgcgtcct
     6301 acagtgcaaa ttggcgatcc tttcagtgaa aaacttctta tggaggcttg tttagagctt
     6361 tttaaaaccg attatattgt gggtattcaa gatatgggtg ctgcagggct tacttcaagt
     6421 tcttttgaaa tggcaggaag aagtggcagt ggcatgaaac tttacttaga taaaactcct
     6481 atgcgtgaaa gcggtatgac tccttatgag ttaatgctta gcgaatctca agaaagaatg
     6541 cttatttgtg cgaaaaaagg ctatgaagat aaggttatag agattttcaa aaaatgggat
     6601 ttagatgctg tggttatggg tgaagttacc aatacaggaa aaatggagct tttttggcat
     6661 gatgagcttg taggacttat tcctatcgag cctttaagtg aaaaagcgcc gattttaagt
     6721 cgccctacaa gtgaaccaaa atatttaagt gaaattaaaa attataaatt tgagttaaaa
     6781 tcaagcgttc aagagctttt tatacaaatg cttcaaaatg aaaatattaa taataaagct
     6841 tttatttatg atcaatttga ttcaagtgtg caaaccaata ccataaaagc tgatggaaga
     6901 ttaggtgcta gtgttattcg tatcaaagaa aatggtgcaa gtgtggctat ggctatagaa
     6961 tgtaattcac gcttaaatta tgtaaattct aaaataggag cagctttagc agtagcttct
     7021 gcaggaagaa aagttgcttg tacgggggct aaacctttgg caataagcga ttgtttaaat
     7081 tatggaaatc cgcaaaatcc tgaagtgatg tggcaattcg cacaaggttg cgaaggtatt
     7141 aaagaagctt gtaaagagtt aaatacccca gtagtaagcg gcaatgtttc gctttataat
     7201 gaaactgaag gcgtaagtat ttatccaagt cctactatag taagtgtagg ggttttagaa
     7261 gatgcaaata aaaccctaaa agctagtttt gaaaaagaaa atttaagcgt ttatcttttg
     7321 ggtgaaagtt taggagaatt tagtggatct atggtaatga aaatccaaga taaaaaagta
     7381 tcaggaagtc ttaaagagct tgattataaa gctgaacttg cactttggga tttgctttat
     7441 aaagccaatc aaaattcttt acttgagtgt gccaatagcg taggaatagg gggtattgct
     7501 atgactttgg caaaaatgtt tgctatttct agtgtgggtg caaatttaac aagtgatttt
     7561 gatgatgaaa aaatgatttt tgatgagagt gcaagtcgtg ctataatagg gcttagtaaa
     7621 gaaaatgaag aagctttttt aaatttagct aaagaatttg gagtaaaagc ttataaatta
     7681 ggtgtgagta caagccaaaa acattttaaa cttgatagca ttgagttaag caaggctgaa
     7741 cttgataagc tttattttga aagttttaaa gagcaaatcc aatgacttta gttttaatta
     7801 tactcgttgt tttggtgttt tactggtatt ataaaacttg gggaaaacag gattttttaa
     7861 actcagctac aagaggagcc aaaggctttg ctaagggttt tgctcgtggg gttatggaag
     7921 aaagaatgga tgagtttaaa aggcgtatga attactatgt tatcgcactt ttggcaaaaa
     7981 ttgcaaaaag cgatggcagg gtaagtgaaa atgaagctga aatgatcaaa gatcttttag
     8041 atgcaaatgc caaagatgaa aaagaaagag cttttttaaa agcaagtttt aacgaacata
     8101 aagaaaattt aagcgatgct ttttatgtgg caaaagattt tttaaaagaa gtgcctttgc
     8161 ctaaaaatga gcgttttaat gtcttgcgtg tgcttgtttt tatggcttta atcgatgcag
     8221 attttaatgc taaaaagcgt gaaattttag agcaaatcgc taaagccttt gatatagcaa
     8281 aaagcgaact agacgctttt atagcaagtc tttcaaattt aaaaagtact aaaaaagaat
     8341 taagtcttga tgaagctttt gctattttag aacttccaaa taatgcggat ttaaatgcgg
     8401 taaaaaaaca ataccgcaat ttggcaaaaa aataccatcc tgatatttta aatgcaaaca
     8461 atgttagcga agaagagctt aaaatcggcg tagagaaatt tcaaaaaatc aacgaagctt
     8521 atgaaaaagt taaaaaacat ttagaaaggt aaaaatgaga gcattactta gtgtgagtga
     8581 taaagaaggc atagtagaat ttggcaaaga gcttgaaaat ttaggttttg agattctttc
     8641 aactgggggg acttttaagc ttttaaaaga aaatggaata aaagttatag aagtgagtga
     8701 ttttacaaag agtcctgagc tttttgaagg gcgtgtgaag actttgcacc ctaagattca
     8761 cggtgggatt ttgcataaaa gaagcgatga aaatcatatc aaacaagcaa aagaaaatga
     8821 aattttaggc attgatctag tttgtgtaaa tttatatcct tttaaaaaaa ctaccattat
     8881 gagcgatgat tttgatgaaa ttatagaaaa tatcgacata ggcggacctg cgatgataag
     8941 aagtgcagca aagaactata aagatgtgat ggtgctttgc gatccacttg attatgaaaa
     9001 agtgattgag actttaaaaa aaggtcaaaa tgatgagaat tttcgtttaa atttgatgat
     9061 aaaagcttat gagcatacag caaattacga tgcttatatt gcaaattata tgaatgaacg
     9121 ctttaacgga ggttttggag cgagtaaatt tatagtagga caaaaagtat ttgatacaaa
     9181 atatggagaa aatccacatc aaaaaggggc tttatacgag tttgatgcct tttttagcgc
     9241 aaatttcaaa gcccttaaag gcgaagcaag ttttaacaat ctaaccgata ttaacgcagc
     9301 tttaaattta gctagtagtt tcgataaagc tccagctatt gctatagtaa aacatggaaa
     9361 tccttgcggt tttgctataa aagaaaattt agtacaaagc tatatacatg ctttaaaatg
     9421 cgatagcgtc agtgcttatg gaggagtggt tgcaatcaat ggaactcttg atgaggcttt
     9481 agcaaataaa atcaatgaaa tttatgtaga agtaatcatt gcagccaatg tagatgaaaa
     9541 agctttagcc gtgtttgaag gtaaaaaacg cattaaaatt ttcactcaag aaagtccgtt
     9601 tttaatccgc agttttgata aatatgattt taaacatatt gatgggggtt ttgtgtatca
     9661 aaacagtgat gaagtgggcg aagatgagct taaaaatgca aagcttatga gtcaaagaga
     9721 ggcaagtaag gaagaattaa aagatcttga aatcgctatg aaaatagcag cgtttaccaa
     9781 atcaaacaat gttgtttatg taaaaaatgg cgctatggtg gctataggta tgggtatgac
     9841 aagtagaatc gatgcagcaa aggcagcaat cgctaaagct aaagaaatgg gacttgattt
     9901 gcaaggttgc gttttagcaa gtgaagcctt ttttcctttt agagatagca tagatgaagc
     9961 aagtaaagta ggggttaaag ctatagtaga accaggcgga agtataagag atgatgaagt
    10021 ggtaaaggcg gctgatgagt atggtatggc gctttatttt acaggagtaa gacatttctt
    10081 acattaagtt taatggaatg ttatgttttt tacacataat tcaataaaaa ttaaataaat
    10141 tatgtgtaaa atatttccga aaaattttat ttttaggaaa ctatgatgtt taaaactata
    10201 ggatttaagg tttctgctgc aatttttgtg gtgttgctta taagttttat tgtaatgcaa
    10261 gtgattttaa atttggattt taaaaatact gccaataaaa tgagcagggc aaatttagat
    10321 accgtaagta cttctgtttt tcaaacaatg agaatggcta tgaatttagg agatcctgaa
    10381 aaaattaaag aagccattga agatgcaaaa agtatagagg gtattagtga tattaaaatt
    10441 tatccttcaa aagatactat agatcttttt gagatgaaag cccctcaaat ttcaaatgat
    10501 aagcgtatta tagaacaatt ttcaaatcct aaaattcaag ctttagaaga aaatgtaaat
    10561 ggtgttgtgc atttaagatt gatacgccct ttgattgcag atgaaagttg tgttgcttgt
    10621 catgcaaatg ctaatgtagg gagtgtgatt ggggttatgg atatatcaca ttctttagaa
    10681 ggtgttcaaa aagatataag caaaaccagt caatcttata ttgtaatatt tactattgct
    10741 ttgattttta ccctttgtgt ggttctttta atgcttaaag ttgttgttgg aaagcctgtt
    10801 ttagagcttt taaatcatgc taaagaatta gctcaaggaa gtggcaattt aaaagctcgt
    10861 atttcagtta aaggtcaaga tgaaattgct ttagcttgtg gatatatcaa ttaatttatc
    10921 gaaaaaactc ataaggcagt tagcggtgca agtcataatt caaaaaatgt agaaaaacaa
    10981 agcaatcttt taaattcaaa tgctatttct ttaagtgata tcagttcaca aagtcataag
    11041 caaatagatc aaagttttaa acttggtgca aatgttggca atgaacttgg agaacttgct
    11101 agtttgtcaa ataaagcaaa tagtgccaat gaaaaatcct ttttattatt agaacaaatg
    11161 cttaaatctt tgtttaatgt tgctaataaa gtatcaacag tatctcaaaa tgaaaatgaa
    11221 ttggctaaaa aagttgaaaa catggtcaat caagcaggta atatacaaaa agcaactcaa
    11281 atgatggatg agatcgcaga taaaaccaat ttactatccc taaatgctgg catagaagca
    11341 gctagggctg gtgcatttgg acgaggtttt tctgtaattg ctgaggatgt taggcagttg
    11401 gctcagaaca gtgaagaatt tttgggaaat gtagctcaaa ttacaaaaga gcttttgcaa
    11461 agtattaatg aggttagcgc agaattaaag aaaaatgctc aaagtgtaca agctttaaat
    11521 gatgacaccg ctttattggt tgatgatgct aatgaggtta aattatgcaa cgaagatgct
    11581 agggctttgg taactcaatg tactgaaaaa ataaaaattt cacaagagaa tatacaaaat
    11641 ttactttctc gtatgcaaga aaatgttgaa gtaagtgaaa agaatgaaga aatttctaaa
    11701 attctgcttc aagttgcaga tgagttaaaa atagtgtgtc ataatcttga aagcgaactt
    11761 aaccaatttc aaatttaaag gaataaaatg aaaaaaatgc ttcaaattgc tttagctgca
    11821 actttttttg cgggttgtgc tagtacttct cttacttcat ctacttctaa aggtaataat
    11881 gaacttgtgc aaaatcagct tttcaaaata gaaaaaatta tagtaaatgg caaaactttt
    11941 gatccaaaaa acgcagagga aagtccaaat atcagttttg aaaataataa attttatggt
    12001 tattcaggat gcaatcgttt ttttggttct tatcaaacta aggcggatac tttacaaatc
    12061 gaaggtgatc gcgtagcttc aactcaaatg ctttgtcacc caatggatgt aatggatttt
    12121 gaaaattctt tcctttcaaa tttcaaagga acttttaaaa tttcaaatga aaatggaaaa
    12181 cttgttttaa gcaatgatga aatgaaaatc ttttttaaat aatgccctaa agcctcgaaa
    12241 tatcgaggca atcttcttaa atttgacaaa agtctaaaaa atgatacaat tataatttta
    12301 ttatcaaaaa aggtagttaa atgataaaat caattcctga atggagtgag caagaatacc
    12361 tcatgctttc tttaccccat gaaaaaagcg attggaatcc ctacttagag gaaattttgc
    12421 aaagttataa agaatttgta aaagtggtaa gtgaatttca aaaagtttta cttatagctc
    12481 ctaaacagag tgattttgaa aattttaaag atataaaaaa tgtagagttt tttaaatgtg
    12541 ataccaatga tacttggata cgcgattttg gagctataga tatagtagaa aatggtcgtt
    12601 taaaagctct tgattttact tttaatgctt ggggaaataa atttcaaagc gagcttgata
    12661 atgctgtaaa ttctaagctt tttaaagaaa aatttaaaga ggagcttaaa aaggttgatt
    12721 ttattttaga aggaggaagt attgacttta atggagaggg tgtgatgctt acaagctctc
    12781 attgtctttt aaatgaaaat agaaattctc atctaaacaa aactcaaatt gatacaaaat
    12841 taaaagaaat ttttggttta aagcaaatta tttggctaga aaatggtttc ataaaaggtg
    12901 atgatacgga tcatcatatc gataccttag caagatttat agataaaaat accatagcgc
    12961 attgtatttg tgaagatgaa gaggatgagc attatttgcc tttgcaaaaa atgaaagaag
    13021 agcttaaaaa aacaggcttt gatttattag aacttcctat acctaagcct ttatactatg
    13081 aagaaagaag attaggagcg acttatgcga attttgtttt tataaataat gctttaattg
    13141 tgccttttta caaggataaa aatgatgaaa tcatagctaa aagactttct aaagctttac
    13201 ctaatcataa aattatagga gtagatgcaa gagtgttttt acgacaaaac ggttctttgc
    13261 attgttcttg tcaaaatcgt ttcaaaggtt taagatgagt ttgcaaaaaa aagcaactct
    13321 tgtagcaagt ttatgtgcta ttgttttagc cttggttaaa tttatagtag gcttaacaag
    13381 tggttctgtt gcagtacttt caagtgcgat tgattcttta atggattttg ctatttctgc
    13441 ttttaatttt ttggctctta aaaaaagctc acaaaaggcg aatgaaaatt ataattttgg
    13501 tttttctaaa attgaagctt taatgggttt gttagaaggt gtttttatag ttggcgtggg
    13561 gatttttatt ttttatgaga gtattttaaa gatttattat aaagaagaaa ttaaagattt
    13621 aaattcaagc atctatgtga tgatttttgc tttaattatg actttttttc ttgtactttt
    13681 tttaaattat gtagctaaaa aaaccaaaag tttgattata gaaagtgatg ctttgcatta
    13741 caaaacagat tgcttaacca atgcttgtac tttaggggct ttggttttga tttattttac
    13801 aaatttacat attattgatg ctatttttgg gatagtgatc agtctttata cggcattttc
    13861 tgcttttaaa atcattaaaa aagctttagc ttttttaatg gatgaggctt tacctaagga
    13921 acaagtggat aaaatttgta ctttgatttc taataatcct gaaataattt cctatcatga
    13981 attaaagacg cgtaaaactc caagttgtaa ttatttaagc gtgcatttgg ttttttgccc
    14041 tataatttcg cttttaaatg cgcataaaat ttcagatgaa atagaagaag gtgtgcgtaa
    14101 gatgtttgaa aatgaaaaat gggatataca aattcattta gatccttatg atgatgcaga
    14161 acaagaaagg caaagacaat gaaaatcgct ttaatacaac aaaaatttca tttaaataaa
    14221 gaacaaacta taaaaaaaac ttgcgaattt atagaagaag cctctaaaca aggagctgag
    14281 cttgtttgct taggagaact tcatcaaagt gagtattttt gtcaaagtga aaatgtggat
    14341 ttttttgact atgctaatga ttatgaaaaa gatgtgaaat tttgggcaaa tatagctaga
    14401 aaaaatcaaa tagtgcttat tgcttcattg tttgaaaaac gaagtgccgg actttatcat
    14461 aatactgcag tggtttttga aaaagatggt tctatagcag gcaaatatcg caaaatgcac
    14521 atacccgatg atccttgttt ttatgaaaaa ttttatttta ctcctggaga tttgggtttt
    14581 gaacctataa atacaagttt aggtaagctt ggagtgctta tttgttggga tcagtggtat
    14641 cctgaagcag caagaattat ggctttaaaa ggagctgaga ttcttattta tcccacggca
    14701 attggttggt ttgataagga taaagatgaa gaaaaacaaa gacagctcaa tgcttggctt
    14761 ggcgtacaaa aaggacatgc tatagctaat ggtttatatg tagtagctat caatagagta
    14821 ggttttgaaa aagatgtaag cggggtagaa gagggcatta gattttgggg aaattctttt
    14881 gtttttggcc ctcaaggtga agaactttgt cttttagatt ctcaaaacga atgtgtaaaa
    14941 atcatagaaa tagataaaaa aagaagtgaa aatgtgcgtc gttggtggcc ttttttgcga
    15001 gatagacgca tagaatattt tacagattta actaaaagat ttattgatta aatcaataaa
    15061 tcttatttgt tttgtatatt ttcaagatag ctttttattt gctctttttc ttgttcgttt
    15121 aaatttataa aacttatttc tttaagtctt gataaaagca aattatcttc taaaatttca
    15181 ttttttccta tttctaaaga agtgatgacg ctagaactta tgagaagtct ttgggttgca
    15241 tcttttctta agccccatat attatgtatg gcaatattat tatctgtaat ttgccctgca
    15301 taaagcataa tatgtccagg taaataaagt aaactaagat aagctttccc aaagcggttt
    15361 aaaaaatctt ttttttgaga attactaaga gtgcttatat caaaatgatt aaaagaattt
    15421 ttttgtgcag ctgaatttct tggtagataa agtccaaaag ctgaaaagat atcacgagtt
    15481 agtaaagaac aatctctttc aaaattataa ccgccccagc cataaggcaa atttaaaact
    15541 tgtgaaagtt gattttttaa atttttatca ttgaattgta aaggaaattt agatacatct
    15601 tttttagaaa ttttatattt tttagaacct atttttccat aaaaatagtt tttatcttct
    15661 ttgtagtaag gatagatagc accaattcta ctttcaaata aaaatttacc atcctcgcta
    15721 tagatagcaa atttttcttt tagtggtgtg ataaagttga gattttcata gattttcgct
    15781 ctatcgtttg agaaaaattc caaattttta ctttcaacaa atccaaatcc agcttcacct
    15841 aaaacaaaag cataacgctt atctttacta aaatgtgaaa ttaagacagg ggctccagta
    15901 tttaaaatgc catcgcttgc atagtcaaaa ggaattcctt cattttcaaa aaaaggattt
    15961 tttaagatag ctctttgggt tggaagattt ttaatgattg tattttggat aattaaagct
    16021 ttttgattaa gtttaccgaa ttcttggata tttgcgttat ttatagcgtt tttaaaccat
    16081 gaaagtggaa taatttgttt attgaaaaaa taataagtat tttttgaatt taaatataaa
    16141 ggaaaggacc aaaaaatatt ttgtcctttg taatttttaa atgaatcatg ccaagggtta
    16201 aagaaatatt ttttatatcg ttttgcatca aaattaatat cgtaagcaaa ttgtggcaaa
    16261 atgtttacat tttgttcgta ttcaagtttt acataatgtt gattttcatt tttttgttct
    16321 aaattttcac gatgaagtga agttaaattt tttgttgaac aagctgttaa aaatagcact
    16381 ataaaagtaa aatataaaca agatttcata atcaaccttt tagaaaaaat agttataatt
    16441 aaagccaagg aaatataatg tttgataaac tagaaaaaat tttagcttat gataatgttt
    16501 ttttaagtgg tggtgctgga gttggtaaaa gctttttgac aaatgagctt atcaaatctt
    16561 atagaaaaca aaaaaaatta gccatagctc ttggttctag tgctctatcg gcgtttaata
    16621 taggcggtgt tactttacac agcttttttt gtttagggta ttgtgatgat atgatgaaat
    16681 taagtgtatt ggatcgcaat caaaaacaaa aagaaaaatt aacaaaactt aaagagcttt
    16741 taaaaacgat tgagcttatt attatcgatg aaatttccat ggttagtgca aatgtttttg
    16801 aaatgatagg ctttagactt aaaaattctc aatttaatgg aaaaatttta gttgttggag
    16861 atttttttca actgcctcca gtaattaaag aaaaaaaaga aactttattt aaccattctt
    16921 attatgcttt ttcttcattt ttttggcaag atttaaattt taagaatatt aaactttctc
    16981 aacctaaaag aacgcaaaat atggaatttt ataaccattt atctttgatt agacaaggtt
    17041 ttttagatga aaaaatttta agcttttttg aatctttgcg aattgattat aaagaattag
    17101 aaaatttaga agatgattat actttacttt gtggtatcaa taaaaaagta aacaatatca
    17161 atcaagaaaa attaagcaaa cttgggaccc cgcttgtatg ctttaaggct caggttaaaa
    17221 aagaagataa gagaataaaa gatgaagagc ttgattcttg gattagaagc ttaaatatat
    17281 tggaagaatt aaatattaaa ataggcgctc gtattatttt ttgcgtaaat aattgggata
    17341 agaattatta taatggagag caaggcatta tagaagatat tctttatgaa gaggagaaaa
    17401 tttatattag cattattaaa aataatggga tgaaaatttt acttgaacct tatacttttt
    17461 tcatggaaga acttgagcaa tcaggtaaag attttgttgt taatattctc gcaagtgtta
    17521 cacagtttcc tattaaatta gcttatgcta ttactataca caaatcacaa ggtatgagta
    17581 ttgaaaaatt agtgtgtgat attgatcata tttttgaaaa tggacagctt tatgtcgctc
    17641 tttctcgcgc tacaaaccca aatactttaa aaatttattc tacaaaaaag ataaattttg
    17701 gattttattt tgctaatatt ttaaaaatag attctaatgt gattgaattt tataaaaaac
    17761 ataatttttt agatctcgaa atacaagaac aaatcattta aaggcattaa atgaaaaaaa
    17821 tatttttaag tgtttttttg gttttgagtt taaatgctca aaatcttgaa atagataaaa
    17881 taagaacaga tttgtattct aaaagtggag caaatgttct taaaaaagtt gaaatttctt
    17941 tggaatttga tgggaataat ttaaaagaaa atgaaaataa gttaattgat gctgtaaata
    18001 cagtaatttc agggtttttt tatgaagata tttttaca
//
LOCUS       DAPIWQ010000016        17699 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.016, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000016 DAPIWQ010000000
VERSION     DAPIWQ010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17699)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17699)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17699
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.016"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1551)
                     /gene="recJ"
                     /locus_tag="RJ267_000419"
     CDS             complement(<1..1551)
                     /gene="recJ"
                     /locus_tag="RJ267_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HDV7388302.1"
                     /translation="MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRI
                     KEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDF
                     PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGI
                     DHINKSKRAAFRAIKHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFN
                     KALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSEN
                     FEQFKNKIKKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFF
                     VLENLCVKNKKLLGKDEKHLKLVLTKENKTIEALFFNFDKEPELNQNISLLGSISKNE
                     FRGMVTPQF"
     gene            complement(1538..3169)
                     /locus_tag="RJ267_000420"
     CDS             complement(1538..3169)
                     /locus_tag="RJ267_000420"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HDV7388303.1"
                     /translation="MKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKADP
                     YINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVIE
                     KERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIRA
                     LRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKALD
                     RDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILSPIAEILDLKNLKPNMEN
                     WDSLVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTKVELKWVDSEKL
                     ENMESAEVFKDVSGILVAGGFGYRGVEGKIKAIQYARENKIPFLGICLGMQLALVEFA
                     RNVLKLKDANSSEFDEKCQNPVVYLIDEFMDTNGEKQIRTAKTPLGGTMRLGAYKCDI
                     KEKSLLAKVYNEAKSVKERHRHRYEANPKYRADFEKHGLIVSGESKGLIEAVELNCHP
                     FFLAVQFHPEFTSRLEHVNPVICSFIKAAINYEDN"
     gene            3289..3912
                     /locus_tag="RJ267_000421"
     CDS             3289..3912
                     /locus_tag="RJ267_000421"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HDV7388304.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEAEFKIGD
                     FENASRYLVLCGNEEVDNASIKALENLRTILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFEALPQEHKFIFEHCLHKDIE"
     gene            4032..5417
                     /locus_tag="RJ267_000422"
     CDS             4032..5417
                     /locus_tag="RJ267_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HDV7388305.1"
                     /translation="MDKQFFQDFLMLSQAHTITTLAMLCVVFYALKKMRDIKINFSLR
                     MLFALLMGLGFGFALQYLANFPDAKEASNILWYSETKHWFAFVSSVFVAFIKMLVVPL
                     VSICIIKVIIEIDKNIKISSLLGISLFWILFSTAIAATLGIFLGYSFDLGSNFAIYEG
                     NKQIREIQTFSNIILGLIPSNIIAAINKENIIAIVIFSFFIGISAKKISKKEEYEQAF
                     KSFHNFILTFYNIMMNMTATVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIMLIYIA
                     MLIMFGVHFLLLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNS
                     AIANFVASIGTTTGLNGCAGYFPALAAVFVAFATHTHIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLAGIGFGNNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKALDKEIYNS"
     gene            complement(5456..7825)
                     /locus_tag="RJ267_000423"
     CDS             complement(5456..7825)
                     /locus_tag="RJ267_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDV7388306.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLCEYF
                     EKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSCQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLN
                     YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELH
                     FDEEQKVVIDGGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWG
                     SDEHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKAL
                     TLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIECEGCQ"
     gene            complement(7841..9169)
                     /locus_tag="RJ267_000424"
     CDS             complement(7841..9169)
                     /locus_tag="RJ267_000424"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDV7388307.1"
                     /translation="MVERYSREIMAKKWDMQAKYDAWLKVELAAVKAWNKLGLIDDTD
                     CEKILKNAKFDIARIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQIKESLELILEDVSLLLEAIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIWYDE
                     ISHAKELLEHAKEVISYGKISGAMGNFAHAPLEFEEEVCKNLGLKAAPVSNQVIQRDR
                     YAQVVSAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFITADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSGRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLSDEDLRKSLSEEDVRKCFDYNYYTKNVDAIFKRTFK"
     gene            9247..10149
                     /locus_tag="RJ267_000425"
     CDS             9247..10149
                     /locus_tag="RJ267_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDV7388308.1"
                     /translation="MAYIKIKLSNNGKKAFQVLMENLKISINEAQKLIDKKRLFCDGI
                     LVEEKNKILNGLVELIVYENNPKGVEIVFENEDFAILEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKEACVAHRLDKETSGLILVAKNKKAQIDLKALFEKKLVQKEYLALANGKIE
                     ENFIIDKAINLAKNYDDVKTRMQICKEGKQAITEFEILEYFPKINATLLLCKPLTGRQ
                     HQIRVHLHYKNHTILGDPLYGLSKEQIESILDEKLTPKERLKLTGALRLCLHSYRLKF
                     QYKNQNFNINSKINIKEIFNNSIK"
     gene            10262..11140
                     /locus_tag="RJ267_000426"
     CDS             10262..11140
                     /locus_tag="RJ267_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HDV7388309.1"
                     /translation="MKFVNFIQGQKPNLGVLNSSGKIVSFDDLGIETNDMNEFIIHFD
                     KFKHKLTDLDSKIAYEIPQENYLAPIIEPRQDIICLGINFLDHAKESAKFKGEKFEER
                     EYPVYFGKRCNQATPPFGDIPLHADVTSQLDYECELAFILSKDAYKIKAKDAKDYIFG
                     YTIINEISARELQKRHKQFYRAKSLEGSTIMGPYITSVDEISYPPKLQLQSYVNDELR
                     QNSNTQLFIFDIAYVLEELSAGMLLKAGSIISMGTPSGVGMGLNPPTFLKSGDKVRCV
                     IENLGELCNKIKNINY"
     gene            11204..12118
                     /locus_tag="RJ267_000427"
     CDS             11204..12118
                     /locus_tag="RJ267_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HDV7388310.1"
                     /translation="MKKIIMILCLSYANIVFAVDMITPIPNSISYDKEKAELGKSLYM
                     DKSLSKDGKVSCNTCHRLDRHGVDGLEFSIGVDNQLDKPFNTPTTFNSVFNFVQFWNG
                     RAKDLTEQAMGPFFNPKEMGLSPELLLQKVNSNENYVKTFKKLYGEVTVENIALAIAE
                     FEKTLITPNSPFDRYLSGDQNAISAQAKKGYEDFKANGCISCHQGQNIGGNMFQKIGI
                     FEEYPNQEDLGRYEITKREADKMVFKVPSLRNIAKTAPYFHDGSIPTLDACVQFMAYY
                     QLGKFLDQETVDNIVAFLESLTGEYHDK"
     gene            12108..13886
                     /locus_tag="RJ267_000428"
     CDS             12108..13886
                     /locus_tag="RJ267_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HDV7388311.1"
                     /translation="MTNKKSSFLIKFIILSTLVLTFILVLLAIIFNNYSSSKDNKDLI
                     NIVQQLEISDEKINSIFQNSFNFINYDPSVQAIKKMQENFAKLKTFGIDISKAEEIFN
                     AKLIQLNYFKSANSIAVNSKLYLFELAKNYFEELEQNHETNKNNYKTMNSMLSVLSTE
                     SILQKTTLNQLNSLMKEIKNDAKNENLQLFLKHYKMIVKQISIMQDNSSIYENNSLMK
                     ELKQLDTFTQNTIEQSNLFKFYIALAVFGITIVLFVFFILLTLKKVIIPIHTLEKLSA
                     NLASKEANLHSRLNIDPKSELGQSAQYINSFISTVQNSIIEAIENAKSSHQNSQKLKN
                     NSMMLENSSNSQHEQIQGVKEITHVLDDHINLAGNLAQESIENMQDMHILMDKVELTL
                     SELVNLINENNEKEQNVVANMDSLTQSADNIIEITNSIKDIADQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVGQLADKTSKSLLNINATVNTIVQQINDNKALMDLIHDSMKETS
                     SKTNDLQQELVNSMHKLESSIESTQTMKDKSMEVKDKMLILGTNIDKVNELANSVKDL
                     SCEINNISQNVLNGASKLSEKLSSFQ"
     gene            13992..14159
                     /gene="dba"
                     /locus_tag="RJ267_000429"
     CDS             13992..14159
                     /gene="dba"
                     /locus_tag="RJ267_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HDV7388312.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            14171..15697
                     /gene="dsbI"
                     /locus_tag="RJ267_000430"
     CDS             14171..15697
                     /gene="dsbI"
                     /locus_tag="RJ267_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbI"
                     /protein_id="HDV7388313.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTL
                     CWGQREAMIFIGVMALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVIFAFAPKFNAFEAELNGEKFRKYTKFSFAAVL
                     ISAIIVASNVFQAFVSTGIPPYVGQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNDINNAPFAKINDELKITNEQTINFDKAINTLDYINN
                     EFVASSKWDVAFLDNNFSVKEGFELDPYFSASIDPIIGIIPYMNDKFILMGSNKSFLR
                     FAKNPNASEEDIAKQYADFVKGNDKFKGQGEGLGRGRLDTVRAKFNHVASMTTDGNYL
                     YLATVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIY
                     ALSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN
                     "
     gene            complement(15718..16392)
                     /gene="queC"
                     /locus_tag="RJ267_000431"
     CDS             complement(15718..16392)
                     /gene="queC"
                     /locus_tag="RJ267_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HDV7388314.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     RECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCISDTPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGKCDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            16469..17695
                     /locus_tag="RJ267_000432"
     CDS             16469..17695
                     /locus_tag="RJ267_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HDV7388315.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRVIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKEKLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMK
                     LINEKILPFVPEGLRGEFSYILGIREGRNGESNFVKNEFENRTYKNAKIELCSGSLSS
                     FNENEFGAIDGKVLKYCDKIAAYIEAGLSISYGVKSKELESGFLGMHEFFKENPTIDG
                     VNFFEICESLREYFKI"
BASE COUNT         6097 a         3070 c         2561 g         5971 t
ORIGIN      
        1 aaactgtgga gttaccattc ccctaaattc attcttagaa atacttccaa gcaaagaaat
       61 attttgattc aattctggct ctttatcaaa attaaaaaat aaagcttcta tggttttatt
      121 ttccttagtt aaaacaagct ttaagtgttt ttcatcttta cctagaagtt ttttattttt
      181 tacacaaaga ttttctaaaa caaaaaaagg tcgtggattt ttatgtccaa aaggttcaaa
      241 agattctaaa atttcaagca tttcaaaatc aatttcgcta ggttctaaga ttcctaaaat
      301 ttcatctgta tccaaaaatt cactttcaga aatttgcgaa cattcttttt tgattttatt
      361 tttaaattgt tcaaaatttt cagagtttaa actgattcca gcagcacctt tatgaccacc
      421 ataattgctt aatatagaat ttgtcttaga aattaaagct aaaatatcaa tcttgccaac
      481 acttcttgcg ctgcctttta agtgttcttc attttgagaa aatacaaaag caggtttatt
      541 aaaatgttta gctaaacgac ttgccacaat ccctaaaaca ccttcatgcc aatttaaacc
      601 cgataccaca atacaagaat cgttttcatc gatttgattt aaactatctt caaaaagctg
      661 tttttcttca tctttacgac tttcattaaa actaacaatt tgctctagat attctaaagc
      721 tttattaaaa tctttagtgt gtaaaaattc ataagaaata cttgcatcat ccattcttcc
      781 agcactattt ataagcggag caattaaaaa tcctatatta tcaagagcaa atttatcctt
      841 ttgataataa tgcttaatag cccgaaaagc agccctttta gatttgttaa tatgatctat
      901 accacgcctt actaaagcac gatttaaatc tctaagttcc atcatatctg caacaattgc
      961 aatcgccaaa agttctaaaa atttacacat gtcatattta agcttgcaca cctcttttaa
     1021 agccgctatc aaataccatg cgacttgagc tccacaaatt tcaatttctg gaaaatcaca
     1081 atctttttgc tttggattga taatggcaaa agcatcaggt aaaacatctt gaggcatatg
     1141 atgatcagtg ataatcaaat ctatattttt ttctttacag agtttggctg cttcaagagc
     1201 agctattcca ttatctactg ttattattaa atttacatca agttcgttga tgatctcagc
     1261 atttaatcca tatccatctt taaaacgatt tggaattctt ataatataat caaaacctat
     1321 atcatcgaaa aattctgcca taataacaca agaaatgatt ccatcaacat cataatctcc
     1381 tactatggcg actttctcat ttttttctac agcttctttg atgcgattag ctgctttata
     1441 tgcatccttt aaacagcatg gcaaaggcag atcacaaagt ttggtatgca aatctttttc
     1501 aaagcgtgaa gctaaaattt ttttaatttc atttttatta attatcttca tagtttatag
     1561 ctgccttgat aaaactgcaa atcacaggat taacatgctc aagtcttgat gtaaattctg
     1621 gatgaaactg cacagccaag aaaaaaggat gacagttaag ctcaactgct tcaatcaatc
     1681 ctttgctttc accacttaca atcaaaccgt gtttttcaaa atctgctcta tattttggat
     1741 ttgcttcata acggtggcgg tggcgttctt ttacactttt tgcttcatta taaaccttag
     1801 ccaaaaggga tttttccttg atatcacatt tataagctcc taaacgcata gttccgccta
     1861 aaggagtttt tgcagtacga atttgttttt ctccatttgt atccataaat tcatcaatca
     1921 aataaaccac aggattttgg catttctcat caaattcact tgaatttgca tctttaagtt
     1981 ttaatacatt tctagcaaat tccaccaaag caagctgcat acccaaacaa attcctaaaa
     2041 aaggaatttt attttctctt gcgtattgaa tggcttttat cttaccttct acaccacgat
     2101 atccaaatcc ccctgcaact aaaattccac tcacatcttt aaatacttca gcactttcca
     2161 tattttcaag tttttcacta tctacccatt ttaactccac tttagtatct agggctgcac
     2221 ctgcatgtat aatagcttca gtaaggcttt tataactttc ttttaaatcc acatatttgc
     2281 ctacaaaagc gattttaact tcattgcttg gagctataac tctttttacc aaagagtccc
     2341 aattttccat attaggtttt aaatttttca aatccaaaat ttcagcaata gggcttaaaa
     2401 tatcttgctt taaaaaatta agtggaattt gataaatact agccgcatca acactttcta
     2461 tcacgcaatt tttttctacc ccgcaagaaa tagcaatttt atcttttaaa tctctatcaa
     2521 gagctttttc actacgacaa ataatcatat caggactaat gcctatgcgt cttaactcgc
     2581 ctacactatg ttgagttggc tttgttttta attcccctgc agccttaata aaaggtacta
     2641 gagtaagatg aatattcata gcattatttt tacccacttc caaacgcaaa gcacgaatag
     2701 cttctaaaaa aggcaagcct tctatatccc caacagttcc gcctatttca acgataagta
     2761 tatctttgcc ttctcctgct tttttaatgc gatctttgat ttctcctact atatgaggga
     2821 taacttgaat ggttttgcca agatattctc cacgcctttc tttttcaatc acactttgat
     2881 aaacccgtcc tgtagtgaag ttattatctt gagataaact ctcatccaaa aaacgctcat
     2941 aatgccccaa atcaagatcc gtttctgctc catcatcagt tacaaaaacc tctccatgct
     3001 caaaaggact catagtgcct ggatcaacat tgatataagg atcagctttt aaaatactca
     3061 ctttaagccc tgaatttttt aaaagtgttg cgatagaagc agcggctatc cctttaccca
     3121 aagaacttaa aactccacct gttacaaaaa tatattttgt ttgtttcatt gacaataagc
     3181 cttatttttt tatctaatta tagcttgata aaacttttta tttcattaga attttaagta
     3241 aaaaatgcaa gaattacaaa aaatattttt atcaaaaaag gaataagcat gcaaatcact
     3301 ttactttttc acactccatt atctgtttgt tctcatgcaa caagaacttg ttggcaaagc
     3361 tttgaaaaag gcgattgcgg tggcgaaaaa gataaagaac ttatcgatcg cgtaggcaac
     3421 aaattcaaac acgcttcaac cttagaacat ctaaactata ctttttatat acaaggaatt
     3481 tcaagagctt gcttacaaga agttgcaaga caccgtcaca ctagtcctag tgtaaaaagc
     3541 acgcgttata ccttaaaaga acttcgcaat gaagctgaat ttaaaatagg agattttgaa
     3601 aatgcaagcc gttatcttgt gctttgtggc aatgaagagg ttgataacgc aagcattaaa
     3661 gccttagaaa atttacgcac tattttacaa aaaagcatta gtctagatat agccaaatac
     3721 tgcttaccag aaagctataa aactgaactt acactaacga ttaatgcaag aagtttgcag
     3781 aatttcattt ctttgcgtag ttcaaaatca gctctttggg agattagaaa tttagcaaat
     3841 gctttatttg aagccttgcc acaagaacac aaatttatat ttgaacattg cttacataaa
     3901 gatatagaat aaatcatact aattttatct tatttaaaat attgttatgc taccatttat
     3961 aaaatcaagc tttacgcaag tatattttca tataccttgt gcttgattat agtttcttat
     4021 aaggactttt tatggataaa caattttttc aagattttct aatgctttca caagctcata
     4081 ctataactac tcttgctatg ctttgtgttg ttttttacgc attaaaaaaa atgcgggata
     4141 taaaaatcaa tttttctctt cgcatgctat ttgcgctttt aatgggtttg gggtttggtt
     4201 ttgctttgca atatttggca aattttccag atgctaaaga agcaagtaat attctttggt
     4261 atagcgaaac aaaacattgg tttgcatttg taagttctgt ttttgtagct tttataaaaa
     4321 tgctggttgt tcctcttgta agcatttgca ttataaaagt aattatagaa attgataaaa
     4381 atatcaaaat atcctccttg cttggaataa gtcttttttg gatactcttt agcacagcca
     4441 tagctgcaac cttgggtata tttttaggtt atagttttga tttaggaagt aattttgcta
     4501 tatatgaagg aaataaacaa attcgcgaaa ttcaaacttt ttcaaatatt atactagggc
     4561 taatacctag caacatcatt gcagctatta ataaagaaaa tattatagct attgttattt
     4621 tttctttttt tataggaatt agtgctaaaa aaatttctaa aaaagaagag tatgaacaag
     4681 cctttaaaag ttttcataat tttatcctaa ccttttataa tattatgatg aacatgactg
     4741 ctacagttat tagatttatg ccttatgctg tagtttgtat gatggctaat gtgcttttaa
     4801 gcaatggttt tgaagctatc aaaacagctg gactttttat aatgcttatt tatatagcta
     4861 tgttaataat gttcggggtg cattttttac ttcttgcttc acaagggcta aaccctataa
     4921 aatatgcaaa aaaagcattt cctgtatggt tatttgcatt tagctcaaga tcttctttgg
     4981 gcactttgcc tatgactact tcaactttgc aaaataaatt tggagttaat tcagctatag
     5041 ctaattttgt agcatctata ggtacaacaa caggacttaa tggttgtgcg gggtattttc
     5101 cagctttagc ggcagttttt gtagcttttg ctacacatac acatattgat tttacatttg
     5161 ctttaatgat agttttggta gctgttattg gatccttggg tatagctgga gtacctggaa
     5221 gtgcaactat ggcagcttct attatgctag cagggattgg atttggtaat aattttgtca
     5281 tgctaagttt gattttagct atagatccta ttatagatat ggcaagaaca gcaagtaatg
     5341 tctcaggagc tatgacttcg gcactttgta ctgcaaaaaa tctaaaagcc ctagataaag
     5401 aaatttacaa ttcttaatct cttaaaaccc aatatttttc attgggtttt agtatttatt
     5461 ggcaaccttc acattctatg ctacgatctg caacattgac tttttcacta tcagggcttt
     5521 cacttcttaa ataataagta gattttactc caagctccca agcgagttga taaatttcat
     5581 ttaaatatcc cccacttgct ttatcaagtg ataaaaagat atttaaactc tgcccttgat
     5641 cgatccattt accacgcaca gcagcagcct ttacaagaat tttttgatca agttcgtagg
     5701 ctggagtata gtattgccaa gtatcaaggc ttaaatttgg cacaacaaca ggtatcatac
     5761 cacttaaatt ttgttcaaac cactttcttt tgtaaacagg ttctatagtc tgcgtagtac
     5821 ccaccaagat agaaatagaa gaagtaggtg caatggccat caaataacca tttctcatac
     5881 catctttttt aactttttct ctaagtttaa cccagtcgca ttcactttga tcaaataagc
     5941 cctctcttaa agttaaagct ttagccttag gacttgctac atcaatagga aaaatcccct
     6001 tgctccaatt tgatccttca aaatcttcat aagaaccttt ttcaagagct aaatttgaac
     6061 tcgcattaat agcctcaaag ctaatttgct ccataatctc atcgatttta tttaaatgct
     6121 catcgcttcc ccaatgaatc ttagcctcag caagcatttg tgcctcgccc ataactccaa
     6181 gacctatggc acgagatttt aaatttgtat cttttacttt tctatgagga taaaaattta
     6241 aatcaattac attatcaagc atacgaatag ctgttggaac aacacgctct atatcttctt
     6301 tagtatatac tttgctaaga tttatacttg ctagattaca aacggctgtt tttccatcat
     6361 ttttatattt ttcaactata taaactttat taccatcaat gctatctaaa gttgatattt
     6421 ttttggctgg tttttcatat cccccatcga tcacaacctt ttgctcttca tcaaaatgaa
     6481 gctcatctcc attttcaaaa actactttga tttgataata atttggctcg gtattttgaa
     6541 aaatttcagt acataaattt gaacttctaa taattcctac atgagcattt ggatttgctc
     6601 tgttagcact atccttaaaa cataaaaatg gcaagcctgt ttcaaaataa tttagcaaaa
     6661 ttttcttcca aagctcttta gcttctacga tttctttggt aatgctttca tctttttcat
     6721 attcttcata gcgtttttca aaagcttcac catataaatc acacaaatcc gccgtatccg
     6781 caggatcaaa aagagtccat ttatcattag ctcttactct cttcataaaa agatcattga
     6841 tccataaagc agggaaaagt tcatgagcac ggcgtctttc ttcacctgaa tttttacgca
     6901 aatcaataaa atcacttata tccatgtgcc aaggttctat ataaacagct atagctcctt
     6961 ttctggttcc tagctgatct actgccacgg caatatcatt agtaattttc aagaaaggta
     7021 taatccctcc tgcggcattt ttatgcccat ctatgcttcc acccatagca cgcactttag
     7081 accaatccca acctataccg ccaccaaatt tagaaagcaa agccatttct tggcaagaat
     7141 caaaaatacc ttcaatatta tcaggggttg atcctatata acaagaacta agctgatggc
     7201 gcgttgttct tgcattagat aaagtcggag ttgcaagcat gagttcaaat ttagaaatta
     7261 aatcataaaa tttcttcgcc cattcttgag gattaaattc attctgcgct aaaaacatcg
     7321 caatggccat aaacatttgt tgaggaagtt ctataggcat acctttacta tctttaatca
     7381 agtatctatc atataaagtt ttaataccaa gataagtaaa ttgcatatcg cgttcaggtt
     7441 taatataagc atttaaatca tctaaatcat atttttcttt aagaccaagt aaaattcttc
     7501 cttctttttc acctttttca aaatactcac acaaatgatt atagcgattc ataccattaa
     7561 cttttttata taaatcaaat aaaaaaagtc tagctgcaac aaaggtccaa tttggacaat
     7621 caatatctat cttatctact gcagttttaa ttaaagtttt ttgaatttct tcagttgaaa
     7681 ttccatcgcg aaattgaatc tttgcatcga gttcaagttc gcttaaattc acaccctcta
     7741 aatcttttac agcatcagag gtgcattttt tgatcttgga aacatccaat tcttctgtac
     7801 gaccatttct tttaataact ttcattgcct tccttgcttt ttatttaaat gttcttttaa
     7861 aaattgcatc aacatttttt gtatagtagt tataatcgaa acattttctt acatcctctt
     7921 cgctcaaact ttttcttaaa tcttcatcgc ttaaaagcgc taacaaaaac aaactttcat
     7981 ttttttcatt gatagcagcc ttgccatttt gcaaatctgc ccaaactttc atagcgtttc
     8041 tttgaactat tttataagct tcttcacggc taatgccttt aaatggaagt tctaaaagca
     8101 ccctccctga aaatacaagc ccgcctgtaa gatttaaatt tttcatcata ttttcaggat
     8161 aaaccaaaag cttatcaatc aaatttgtaa gacgcataag cataaaatca gccgtgataa
     8221 aagcatcagg caaaataaat ctttcaacac tagaatgaga tatatctctt tcatgccaaa
     8281 gtgcaacatt ttccaaagct ggagttacaa aagatctaag cacacgacaa agtcctgtga
     8341 tattttcact taaaacagga tttcttttat gtggcatagc tgaacttcct ttttgtccta
     8401 cactaaaata ctcctcagcc tcataaactt cagttctttg aaaatgtctt atggctacag
     8461 cgatttgctc acaacttgaa gctaaaatcg caatagcaga aacaacttga gcataacgat
     8521 ctctttggat cacttgattt gaaacaggag cggccttaag acctaaattt ttacaaactt
     8581 cttcttcaaa ttctaaagga gcatgagcaa aatttcccat tgcaccgctg atttttccat
     8641 agcttatcac ttcttttgca tgttctaaaa gctcttttgc atgcgaaatt tcatcatacc
     8701 aaatagctaa caccaaacca aaagtgatag gctctccatg aattccatga cttcttccta
     8761 ccattaaggt gtttttatgc tccaaagcac gctttttgat cgcttctaaa agcaaagaaa
     8821 catcttctaa aataagctcc aaactctctt ttatctgtaa agcaacagct gtatctatac
     8881 aatcagagct tgtcattgca taatgcacaa aacgactctc ttctcccaaa ctttcactta
     8941 cacttgtaag aaaagctata acatcatgtt ttgtggtttt ttctatctca tctattcttg
     9001 caatatcaaa ttttgcattt ttaagaattt tttcgcagtc tgtgtcatca atgagaccga
     9061 gtttattcca agcttttaca gcggctaatt ctacttttaa ccacgcatcg tattttgctt
     9121 gcatgtccca ttttttagcc atgatttctc tgctatatct ttcaaccatc tttgaaacct
     9181 ttttagctat aattttatat tttaaaaaac agaaattata tcaaattatc ctaagaaagt
     9241 tattaaatgg cctacataaa aataaaactc tcaaacaatg gaaaaaaggc gtttcaagtc
     9301 cttatggaaa atttaaaaat tagcataaat gaagcacaaa aactcataga caaaaaaaga
     9361 cttttttgtg atggaatttt agtagaagaa aagaataaaa ttttaaatgg tttagtagag
     9421 cttatagtct atgaaaacaa tcccaaagga gtagaaattg tctttgaaaa tgaagacttt
     9481 gccatacttg aaaaagaaag tgggatctta agtcatccaa atggtagaca ttgtaaatac
     9541 agtcttagtg atgaaatttg gcatctttgg ggaaaagaag cttgcgtagc acacagactt
     9601 gataaagaaa cgagcggact tatacttgta gccaaaaata aaaaagctca aattgatctt
     9661 aaagctttgt ttgaaaaaaa actagttcaa aaagaatacc ttgctctagc taacggaaaa
     9721 atagaagaaa attttataat tgataaagcc ataaatttag ccaaaaacta cgatgatgta
     9781 aaaacaagga tgcaaatttg caaggaagga aaacaagcta tcactgagtt tgaaatttta
     9841 gaatactttc ctaaaatcaa cgctactctt ttactctgca aacccttaac aggcagacaa
     9901 caccaaataa gagtgcattt acactataaa aaccatacca ttttaggcga tccactttat
     9961 gggcttagca aagaacaaat cgaaagtatt ttagatgaaa aattaacccc caaagaacgc
    10021 ttaaaactta caggtgcctt gcgtttgtgt ttgcattctt atcgtttgaa atttcaatat
    10081 aaaaatcaaa attttaatat caactcaaaa ataaacataa aagaaatttt caacaattct
    10141 ataaaataaa atgatgtttc actacgctac aatcaatcac ttttctacca aattttaaaa
    10201 caaaaaaata attcttgcta aaactttaag tataattaaa taaaaaagcg agattttcca
    10261 aatgaaattt gttaatttta tacagggtca aaaacccaat ctaggagtac taaattctag
    10321 tggaaaaatt gtaagttttg atgatcttgg cattgaaact aacgatatga atgaatttat
    10381 tatccatttt gataaattta aacacaaact tacagacttg gattctaaaa tagcctatga
    10441 aattccacaa gaaaattatc tagcccctat tatagaacct cgtcaagata ttatatgtct
    10501 tgggattaat tttttagatc atgccaaaga atctgccaaa tttaagggtg aaaaatttga
    10561 agaaagagaa tatcctgtat attttggaaa acgttgcaat caagctacgc caccttttgg
    10621 cgatatacct ttacatgcag atgtaacttc tcagcttgat tatgaatgtg agcttgcatt
    10681 tattttaagt aaagatgctt ataaaatcaa agctaaagat gcaaaagatt atatctttgg
    10741 ctatactatt atcaatgaaa tttcagctcg cgaacttcaa aaacgccaca aacaattcta
    10801 ccgagcaaaa agtcttgaag gtagcactat aatgggacct tatatcacaa gcgtagatga
    10861 aatttcttat cctcctaaac tccaacttca aagctatgtc aatgatgaac tacgccaaaa
    10921 ctctaacact caattgttta tttttgatat tgcttatgtc ttagaagaac ttagtgcagg
    10981 catgctttta aaagctggaa gtattatatc tatgggaact cctagtggag taggtatggg
    11041 gttaaatcca cctacttttt taaaatcagg agataaagta cgttgcgtta tagaaaattt
    11101 aggagaactt tgcaataaaa taaaaaatat caattattaa ataatttact aaaattatac
    11161 tataatggca ttttaaaaac ttaaattaag gcagaaattt atcatgaaaa aaataataat
    11221 gattttatgt ttatcttatg caaatatagt ctttgcagta gatatgataa cccctattcc
    11281 aaattccatc tcttatgata aagaaaaagc tgaacttgga aaaagtcttt atatggataa
    11341 aagtttatct aaagatggaa aagtttcgtg caatacttgc cataggcttg atcgacacgg
    11401 tgttgatggg cttgaatttt caataggagt tgataatcaa ctcgataaac cctttaacac
    11461 tcctacaacc tttaattctg tgtttaattt tgtgcaattt tggaatggca gagctaaaga
    11521 tttaacagaa caagctatgg gacctttttt caatccaaaa gaaatggggc taagtcctga
    11581 acttctttta caaaaagtta attcaaatga aaattatgta aaaactttta aaaaacttta
    11641 tggagaagtt acagtagaaa acatagccct tgcaattgct gaatttgaaa aaaccttaat
    11701 caccccaaat tctccttttg atcgctatct tagcggggat caaaatgcta tttcagctca
    11761 agctaaaaaa ggctatgaag attttaaagc taatggttgc atttcttgtc atcaaggtca
    11821 aaatataggt gggaatatgt ttcaaaaaat cggtattttt gaagaatacc caaaccaaga
    11881 agatttaggg cgctatgaaa tcacaaaaag agaagctgat aaaatggtat ttaaagttcc
    11941 tagtcttaga aatatagcca aaaccgcgcc ttattttcat gatggttcta tacctacttt
    12001 agatgcttgt gttcagttta tggcttacta tcaactagga aaatttttag atcaagaaac
    12061 agttgacaat atagttgcat tcttagaaag cttaacagga gaatatcatg acaaataaaa
    12121 aaagttcatt tttgataaaa tttattatct tatctacact agttttgact ttcattcttg
    12181 ttttattagc tattattttt aataactatt cttcatctaa agacaataaa gacttgataa
    12241 acatagttca gcaactagaa atttcagatg aaaaaatcaa ttctattttt caaaatagtt
    12301 ttaattttat caactatgac ccaagtgtgc aagcgataaa aaaaatgcaa gaaaactttg
    12361 caaaacttaa aacttttggg attgacataa gcaaagcaga agaaattttt aatgccaaac
    12421 taattcagct taattatttt aaatccgcaa attccatagc agtaaattca aaactttatt
    12481 tatttgaact agctaaaaat tattttgaag aattggaaca aaaccatgaa acaaataaaa
    12541 acaactataa aacaatgaac tccatgttaa gcgttctttc aactgaaagt attttacaaa
    12601 aaacaacatt aaatcaactc aacagtctta tgaaagaaat caaaaatgat gcaaaaaatg
    12661 aaaatttgca acttttttta aaacactata aaatgattgt aaagcaaatt tctattatgc
    12721 aagataattc ttctatttat gaaaataatt cccttatgaa agagttaaaa caacttgaca
    12781 cttttaccca aaatactata gaacaatcta atttatttaa attttatatc gctttggcag
    12841 tatttggaat tactatcgta ttatttgtat tttttatttt attaacacta aaaaaagtca
    12901 tcataccaat tcatacttta gaaaaactaa gtgctaattt agctagcaaa gaagccaatc
    12961 tacattctcg tttaaacata gatccaaaaa gcgagcttgg acaaagcgct caatatatta
    13021 attcatttat atccaccgtt caaaactcga tcatagaagc catagaaaat gctaaatcaa
    13081 gtcatcaaaa ttcacaaaaa ctcaaaaaca attctatgat gcttgaaaac agttctaatt
    13141 ctcaacatga acaaattcaa ggagttaaag aaatcactca tgttttagat gatcatatca
    13201 atcttgcggg aaatttagca caagaaagta tagaaaatat gcaagatatg cacatactaa
    13261 tggataaagt agaacttact ctatctgaac ttgtaaattt gataaatgaa aacaatgaaa
    13321 aagaacaaaa tgtagtagcc aatatggata gtctaaccca aagtgcggat aatattatag
    13381 aaatcacaaa ttccattaaa gatatagctg atcaaactaa tttacttgct ctaaatgcag
    13441 ctatcgaagc tgcaagagca ggcgaacatg ggcgtggatt tgctgttgta gccgatgaag
    13501 ttggacaact tgctgataaa acaagcaaat ctcttttaaa tatcaatgct actgttaata
    13561 ctatagtcca acaaatcaat gacaacaaag ccttaatgga tcttatccat gattctatga
    13621 aagaaacctc ttcaaaaacc aatgatttac aacaagaact tgtaaattct atgcataaat
    13681 tggaaagctc tatagaatca acccaaacca tgaaagataa aagcatggaa gtaaaagata
    13741 aaatgcttat cctaggaaca aatatagaca aagttaacga acttgcaaat tctgttaaag
    13801 atttatcatg cgaaatcaat aatatctctc aaaatgttct aaatggtgcc tctaaactct
    13861 ccgaaaaatt aagtagcttt cagtaacttt tttcacgtta atttaactta acgtgaaatt
    13921 tcaataaaaa ttttattttt aatttatgtt tttcaagtaa aattagcagt ttttatttca
    13981 aaggagatgc tatggagttt cttgaacttt tattagtttt aatcgccttg atactgatta
    14041 tcaaaaaacc agaaaaagaa aatttggctt ttggtttggt aatggtagct tggcttttaa
    14101 tggttttttt ctatgttggc cacaaaacag gcgcactatt aacaataatg aatctgtaag
    14161 gaagggctaa atgaacgaaa tcaataaaac aaaaaatttc tacacactaa tgtgtttagc
    14221 aggctttttg attatactct tgcctgtagg tattgcaaat ttgatatttg gttatatgtt
    14281 gggcgatagt ccttgcacgc tttgctgggg acaaagagaa gcaatgatct ttatcggtgt
    14341 aatggcgctt ttcattgttc gttatggtat gaaaggtaaa taccttgccg ctcttttaat
    14401 catgacagca gtaggacttt atcaatcttt tgctcactat ggtaatcacg ctcatagaga
    14461 tttagatcaa ggttttggtt tagcagtttt tggtatccat acttattttt gggctgaagt
    14521 agtattttgg gctgttgtat tgctcttagg tgtgattttt gcttttgctc ctaaatttaa
    14581 tgcttttgaa gctgaactaa atggagaaaa gtttagaaaa tatactaaat ttagctttgc
    14641 agcagtttta atcagtgcta tcatcgtagc atcaaatgtt ttccaagcct ttgttagcac
    14701 aggtattcct ccttatgtag gacaaggcga tcctgtaaga tttagtttaa atccaaaata
    14761 catcatttgg agtaaagaag gttggaatgg tttatggcaa aatatttctt tcttaggaaa
    14821 acgcgatgtt aaagctcctg attatgcttt tgcacctgca agtgaaaaac ttggcataaa
    14881 atttgataat gatatcaaca atgctccatt tgcaaaaatc aatgatgagc ttaaaatcac
    14941 aaatgaacaa accataaatt ttgacaaagc catcaatact cttgattata tcaataacga
    15001 atttgtagca agttctaaat gggatgtagc tttcttagat aataatttta gcgttaaaga
    15061 aggttttgaa cttgatcctt atttttcagc ttctatcgat ccaatcatcg gtatcatacc
    15121 ttatatgaac gataaattca ttcttatggg ctcaaacaaa tctttcttaa gatttgcaaa
    15181 aaatcctaat gcaagtgaag aagatatcgc taaacaatac gctgactttg taaaaggtaa
    15241 tgataaattt aaaggccaag gcgaaggttt aggtcgtgga agacttgata ctgtaagagc
    15301 gaaatttaac catgtagcaa gtatgactac agatggaaat tatctttatc ttgcaactgt
    15361 tccaaacaac aaagacgcta aaacttttgt aatctctaaa gtttctttaa aagatcgtgt
    15421 tctttcagga gaatttactc caaaagcaaa tcttaaagaa ggtaaaactt taggcgatct
    15481 ttatgtaact tctatgactt ttaaagatgg ggaaatttat gcacttagca aaaatcacaa
    15541 tgtgattgcc gtaattgatc cagtcaaaga agaagtagta aaaaccatcg ctttcccaag
    15601 ctctatcact aatgctagaa gcattttctt taaagatgga aaaatcaata ttctttctta
    15661 tcaagatgga gcaaacaagc tttatacttt aaactaagct ttaagtccta gtgaaaacta
    15721 ggacttatat ttgatcttat ctttaaaccc tgctttttca aaacccctta aacgaagcaa
    15781 acaactatca cacttcccac aagcttcatc ttcactctca tagcaagacc aagtaagttc
    15841 taaaggtaca ttttctttta aggctagttc tacaatttta gctttgttca gtctaacaag
    15901 cggggttttt atacaaactt tgaaattctt actcgtacct tcattgataa attcttgtgc
    15961 cttttgtata aactcatcag tacagtcagg ataaccactg ccatcttctt ctaccacccc
    16021 tataaaaata ctctcacaat tttccttttc agccaaagat cctgctatgc ttaagaaaat
    16081 tccattgcga aaaggcacat aagtgatagg tggagtatcg cttatgcaaa gctcattttt
    16141 agggatatct atacttttat cagttaaggc attgccccct atatctttga taaaactcac
    16201 atctaaaata taagattttt ctacttttaa agccttgcaa atttgcttaa aacattctct
    16261 ttctttctct tgggtgcgtt gttcatagtc aaaatgcaaa gcgatgattt cataaccttc
    16321 ttttttggct agataagcac acaaagtgct atccatacca ccacttataa tacaaagtgc
    16381 ttttttactc atttttatcc ttaaatttgc tataatttcg caattttaac gaaaattttt
    16441 aaatttaaat tgcaaaaaag gcaaaagcat gataaacata aaactcatag aacacatttt
    16501 taaagccgct tctatcagtc gttggaatga ttatccaaga atggcaaatt tggttgaact
    16561 tgacaaacaa gctcataaat tcatcattgc atattttatc gctaaaatgg aaaaagatgt
    16621 ggatatgaga gtgattatag aagggggaat ttttgagttt ttaagtcgtg tggtagtaac
    16681 cgatatacgc cctgatgtat atcatgaaat cgtgcgtcaa aaaaaagctg aagttaatgc
    16741 ttgggtttta agcaaaatcg aacctatgat agaagatata gaagatgggg aatttctaaa
    16801 gcgttttgaa gcgtatttaa acggcaatgc ttacgctaaa gaaaagctta tcttaaaagc
    16861 ggcttcgtat tttgctacaa gatgggaatt taacatagtt tatcaaacct cagctttttt
    16921 aaatgatatt gatgagatta aaaacaaagt tgaagaagaa ttagaagatt actatgagct
    16981 tataggagct agaaaaatcg ctttaaatca aaaaattgca aaaatcatcg atcttagcgg
    17041 aagacttcgc tttcaaaagc gttgggctca aactccacgc ataccagaaa ccgcggtttt
    17101 aggacatatg cttgtggtgg cgattttagg atatttttac tcactaaaaa taaaggcttg
    17161 tgataaaaga cttgagaata atttttattg tgctttattt catgatttgc cagagtcttt
    17221 aacgcgtgat attatcagcc ctgtaaaata cggcattgat gggcttcatg atattataaa
    17281 tgattatgaa atgaaactta ttaatgaaaa aattttaccc tttgtacctg agggtttaag
    17341 gggtgagttt tcttatattt taggcattag agaaggtaga aacggtgagt caaattttgt
    17401 aaaaaatgag tttgaaaacc gcacttataa aaatgctaaa atagagcttt gtagcggaag
    17461 tttaagttct tttaatgaaa atgaatttgg tgctatagat ggtaaggtgc ttaaatactg
    17521 cgataaaatc gccgcttata tagaagcagg acttagtata agttatggtg taaagtctaa
    17581 agaacttgaa agtggttttt taggaatgca tgagtttttt aaagaaaatc ctactataga
    17641 tggggtaaat ttttttgaaa tttgtgaaag tttaagagag tattttaaaa tttaaataa
//
LOCUS       DAPIWQ010000017        17178 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.017, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000017 DAPIWQ010000000
VERSION     DAPIWQ010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17178)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17178)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17178
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.017"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1197)
                     /locus_tag="RJ267_000433"
     CDS             complement(<1..1197)
                     /locus_tag="RJ267_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C biogenesis protein"
                     /protein_id="HDV7388316.1"
                     /translation="MKNIIKSIGDLRVSVVLFLLFALFCALATFIESAYGTPTAWAMV
                     YDTFWFEYIQLLLGINLLCGMFRYKMFGLKKLPLMIFHISFLFILVGSAMTRYAGFEG
                     ILPIREHTQNSLIESSKTSLRISAIKDGERYSAVNDRYIGNLPFANSFKLKLNLGDDQ
                     AVLKYKDLILNAHYTYKENNNSDPLLVLMLSQKGSQGVDVKFEKGEVKNIEGVNFAFM
                     NDNVKAPFVKIDENLTLSSSENLHFLSMLDGQNLDLKIGEKANAKERRLYEINDISFV
                     VKAASLHAQEALEGSNRPQDESFWLWFKSAWLEVGRTMLISTFGEPQNWKNSLLLHFK
                     DFALSNENKNLELTGSNALKLELSYKNESKEFYIFEYNKPIMIELADQKFFISWALSY
                     EQLPFDI"
     gene            complement(1215..1910)
                     /locus_tag="RJ267_000434"
     CDS             complement(1215..1910)
                     /locus_tag="RJ267_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7388317.1"
                     /translation="MLIVKDLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTL
                     NALLNSVKRTGEVNFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFN
                     NAENYEHLREQMYKLFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNL
                     IGDDEIRKKYLGL"
     gene            complement(1897..2667)
                     /locus_tag="RJ267_000435"
     CDS             complement(1897..2667)
                     /locus_tag="RJ267_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7388318.1"
                     /translation="MILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTL
                     FNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGF
                     NKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEELGIAEFAYEKATSLSYGQQRKVE
                     IARAMATQPRLLLLDEPAAGMNSSESDELAGLIFKLRKDYKISVLLIEHDMKFVNKLC
                     DRVLVLDYGKTIFEGKLCDAVNHKEVIAAYLGDFDANS"
     gene            complement(2664..3716)
                     /locus_tag="RJ267_000436"
     CDS             complement(2664..3716)
                     /locus_tag="RJ267_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HDV7388319.1"
                     /translation="MMVRIKVSHLIFLIASIIFIFISPYIFGDYGLNIVNQIAIFIIL
                     AVSYNLINGVTGQFSLEPNGFVAIGAYAAALVLLSADAKNDQFFLDGPSSFILAIHSN
                     SFILALIVAGICSSLLALILAFAVFRVRGDYLAIVTLGFGIIIKIAAINFPSITNGSR
                     GLVDIPQFSTIYWTGGIAIVAVILILNIVYSKYGRAMKAIRDDEDAASAMGINTFWIK
                     TLAFSTSAFLEGVGGGLLACLLTTVSPTQFDFLLTFQLLIIIVLGGLGSTTGAIIGAI
                     LVIGGSEWLRFLDELNIKIDSLNLDIQSTPGLRMVVFSIVLILVMLFARKGIMGYYEL
                     SDVIRGIKKRFKRSKK"
     gene            complement(3716..4612)
                     /locus_tag="RJ267_000437"
     CDS             complement(3716..4612)
                     /locus_tag="RJ267_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HDV7388320.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYAALFCMTNLNVPFLGALSLAMIFAACVGIATDRIAYKPLRQAPRISLLITAI
                     GISFFLQNLFNMLFTSTPRTFTPPSYFEESVNFGGVITTYGSLMVPALTFVILIAVLW
                     ILYKSKYGIAIRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVE
                     PTMGTLIGLKAFAAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIF
                     LVFILLFRPTGILGINFEKSRF"
     gene            complement(4631..5740)
                     /locus_tag="RJ267_000438"
     CDS             complement(4631..5740)
                     /locus_tag="RJ267_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDV7388321.1"
                     /translation="MKKSLILASILSLSLSAAEVKIGVVLPLSGATAAYGQSALEGIK
                     LANSMQSALSNGDKVSLAIIDTKGDKLESSSGANRLVSQDKVIGLIGEMVTANTLQVM
                     RVAEDNKIPLIAPAATGDRLLDKKIYSSRVCFMDSFQGSSLAKYVFSKLNYKSAVIVV
                     DQSTDYSLGLAKAFEKQYKSNGGQILRILRVNSGDKDFRAIVAQVKSLNPEFIFLPLY
                     YSEASLFARQSKLAGLNIPMGSADGVADQTFISLAGDASEGYIFTDSFDANNPTTKLS
                     KEFISVYEKAKGTKEVPNFSAMGADAYFVMLNAMNACVENLTSKCVNEKIHQTKNYQG
                     VSGVISIDQTGNATRSVVVKEIKNQKQNYKDIINP"
     gene            complement(5762..6877)
                     /locus_tag="RJ267_000439"
     CDS             complement(5762..6877)
                     /locus_tag="RJ267_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDV7388322.1"
                     /translation="MKKLTLTLSVLTMVNCLYAKDINIGVVLPLTGTVAAYGQDVFNG
                     IELANKLQPKLSNGDVIKLITIDTKGDKLETSNGVNRLIATDKVLGIIGEATTPNTIQ
                     AISIAEEKKIPLIAPVASGDKLLDKKKYASRVCFKDSFQGDKFATYVSKDLGLKNAVI
                     IIDQSNVYSLGLARAFENSFKNNGGKIIKKLVINSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQARQIGFDKLLVAGDGVNNQTFIDLGGSAVNGVIFTDSFDYNSPSTQ
                     LGKDFVAAYEKVKGTKELPAFSAMGADAYFVMLNAMNACVDNLSSECINSKIHQTKDF
                     QAVGGVISIDESGNAIRSVVIKEIQNQKQNYKTIINP"
     gene            complement(6908..7342)
                     /locus_tag="RJ267_000440"
     CDS             complement(6908..7342)
                     /locus_tag="RJ267_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDV7388323.1"
                     /translation="MIARWLFISSIFVVALFGINLKSFFTYTFDANKQYDMEKAKALY
                     FQNKCNTCHGDNAEKSVIGSRILKDMSPEDIKGALIGYTLDSSSSTTASQMAFYARNL
                     SHEDIDNIIAYIKGGNFALDLQVKDLLEEEPAQKTKHNIFLK"
     gene            complement(7351..7542)
                     /locus_tag="RJ267_000441"
     CDS             complement(7351..7542)
                     /locus_tag="RJ267_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HDV7388324.1"
                     /translation="MKKIFLIGMILNHFVFAAPLDEVFKDIEVSGTVRYRYDIKKEKK
                     YNKKTHRYQNKTQTEITIK"
     gene            complement(7595..8101)
                     /locus_tag="RJ267_000442"
     CDS             complement(7595..8101)
                     /locus_tag="RJ267_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HDV7388325.1"
                     /translation="MLEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIF
                     YTYNYFFDAGSNVDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            complement(8110..9141)
                     /locus_tag="RJ267_000443"
     CDS             complement(8110..9141)
                     /locus_tag="RJ267_000443"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HDV7388326.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVG
                     SEVEFKGKAYKVKELTENVFKENPIDIAFFSAGGSVSEKYAKFAVESGAVVIDNTSHF
                     RMEKDVPLVVPECNPEDIKDWKKTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTY
                     QAASGAGKEGMQELVEAMQSFFAFKLDEFEPQTFPYTLALNLIPQIDVFMDNDYTKEE
                     LKMVNETQKILHKNLEVSATCVRVPVLRSHSEAITMHFEKEIDVKKAKEILKKAPSVI
                     VIDDPKNKKYPMPLMTSDTNETYVGRIRADVYDKKILHLWCVADQIRVGAATNAVRIA
                     QKWLELKNK"
     gene            complement(9141..10442)
                     /gene="flgR"
                     /locus_tag="RJ267_000444"
     CDS             complement(9141..10442)
                     /gene="flgR"
                     /locus_tag="RJ267_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system response
                     regulator"
                     /protein_id="HDV7388327.1"
                     /translation="MNLVIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKIDDN
                     TDLIITDINMPGIDGIEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPFDV
                     DTLVEAIKRAKIIREKTADKKSKKNEKKEENKDFFSTSPNLEKTLNLSQKAAKTDASV
                     MFFGESGVGKEVFSRYIHTHSKRSNKPFIAINMAAIPANLIESELFGFEKGAFTDANA
                     TKIGLFEMANEGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDVRIISAT
                     NANLDEKIKNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLEDTCKEYDFKEK
                     QLSQEAKNALLEYDFPGNIRELISVVQRACILSENDEISSEDLFLEARSIKKDVKNLE
                     KELICEVLLSVDYDKDQASQILGMDIKILNEKIKKYQIKDK"
     gene            complement(10499..10948)
                     /gene="flgQ"
                     /locus_tag="RJ267_000445"
     CDS             complement(10499..10948)
                     /gene="flgQ"
                     /locus_tag="RJ267_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FlgQ"
                     /protein_id="HDV7388328.1"
                     /translation="MERIVCLLIFLSFKLFAQDEFIFWAELSSKNFILFHQNQNLSLA
                     MTQSENVEEQWVCEISYSDQDLKVLPRTSLGLIDDNMPKTIKFNFLNSHKDELSDCFI
                     GARISVKDIVNTDLLRAQSETYVKILPLRFTVEFGEQNAIIYYLKKK"
     gene            complement(10924..11439)
                     /gene="flgP"
                     /locus_tag="RJ267_000446"
     CDS             complement(10924..11439)
                     /gene="flgP"
                     /locus_tag="RJ267_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HDV7388329.1"
                     /translation="MKKIYFMLAIAGIFAGCVPSANSATKNSSANSTAPSQDVIVQKV
                     DKDDVRDIIREEKMLAPDASETELSFTAVGEGIAPMNTVSTAQALALAKRAAITDAYR
                     QLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDENFNQGLYRVNLELKI
                     DADKWKELFAY"
     gene            complement(11503..14094)
                     /gene="gyrA"
                     /locus_tag="RJ267_000447"
     CDS             complement(11503..14094)
                     /gene="gyrA"
                     /locus_tag="RJ267_000447"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HDV7388330.1"
                     /translation="MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMR
                     YPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPD
                     VLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIE
                     QIAELVKERQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE
                     NLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAV
                     VIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETM
                     DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEENDEDELSDE
                     NFGLDLQ"
     gene            complement(14135..14710)
                     /locus_tag="RJ267_000448"
     CDS             complement(14135..14710)
                     /locus_tag="RJ267_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HDV7388331.1"
                     /translation="MRCINCGAFALLCFCELCELELSEFSLNVRKLDNNFKVYSFYKY
                     HEIQHLLHSKHYFYGYFVYKMLAKLSFAKFKDFFDPRMTINVIALDDKVEDMLYSHSA
                     ILARYLKTKFVKPVFNVLKAQNSVKYSGKSLEFRQKHKRNYKLLKTIHEPVILVDDIV
                     TTGSSLLEAKKVLEENKISVLFALVLADAKV"
     gene            complement(14707..15351)
                     /locus_tag="RJ267_000449"
     CDS             complement(14707..15351)
                     /locus_tag="RJ267_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388332.1"
                     /translation="MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPG
                     GFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF
                     VDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKL
                     VGVLQVSDINKNKKFTIRTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL"
     gene            complement(15428..>17178)
                     /gene="lepA"
                     /locus_tag="RJ267_000450"
     CDS             complement(15428..>17178)
                     /gene="lepA"
                     /locus_tag="RJ267_000450"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HDV7388333.1"
                     /translation="HGKSTLADRIISECGAISDRQMSSQVMDTMDIEKERGITIKAQS
                     VRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLVVDASQGVEAQTIANVY
                     IALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDAICVSAKTGVGIKELIET
                     IITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSIAKNDEVLVMSTDKKHI
                     VQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTITLVKNKAKEAIGGFEK
                     AKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSLALGFGFRVGFLGLLHM
                     EVIKERLEREFNLDLIATAPTVTYEIYQTDGELIKIQNPSELPPVNKIDHIKEPYVKA
                     TIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPLNEIVMDFYDKLKSLTK
                     GYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQSKGRELVSAMKEIVPR
                     QLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRKLLEKQKEGKKRMKAIG
                     KVNLPQEAFLSVLKID"
BASE COUNT         5867 a         3332 c         2040 g         5939 t
ORIGIN      
        1 aatatcaaaa ggcaattgtt cataagaaag cgcccaagaa ataaagaatt tttgatctgc
       61 aagttctatc ataataggtt tattatattc aaaaatataa aattctttac tttcattttt
      121 atagcttaat tctaatttta aagcattaga gccagttaat tctaagtttt tattctcatt
      181 gcttaaggca aaatctttaa aatgcaataa taaagaattt ttccaatttt gaggctcgcc
      241 aaaagtagaa atcaacatag ttctacccac ttctaaccaa gcagatttaa accataacca
      301 aaaactttca tcttgaggtc tattggaacc ttctaaagct tcttgcgcat gcaaagaagc
      361 agctttaact acaaaactaa tatcattaat ttcataaagt cttctttcct tagcatttgc
      421 cttttctcca attttaaggt ctaaattttg tccatctagc atgcttagaa aatgtaagtt
      481 ttcacttgaa cttaaagtta aattttcatc aatttttaca aaaggtgctt taacattatc
      541 attcataaaa gcaaagttaa ccccttctat attcttaact tcaccttttt caaatttaac
      601 atcaacacct tgagatcctt tttgagaaag catcaaaacc aataaaggat cagaattatt
      661 attttcttta taagtataat gagcatttaa gattaaatct ttatatttta atacagcttg
      721 atcatcacct aaattaagtt ttagtttaaa agaattagca aaaggcaaat ttcctatata
      781 acgatcatta accgcactat agcgttctcc atcttttata gcagaaatac gcaaagaagt
      841 cttagaactt tctataagtg aattttgagt atgctctcta ataggtaaaa taccttcaaa
      901 accagcatat cttgtcattg cagaacccac taaaataaat aaaaaagaaa tatgaaaaat
      961 cattaaaggt aattttttaa gcccaaacat tttataacga aacatcccgc atagtaaatt
     1021 aataccaagt aaaagttgta tatattcaaa ccaaaaagta tcataaacca ttgcccaagc
     1081 cgtaggggtt ccataagcac tttcaataaa agttgccaaa gcacaaaaaa gcgcaaaaag
     1141 caaaaacaat acaaccgaaa ctcttaaatc ccctatgctt tttattatat ttttcattct
     1201 ttttccttta aattttaaag ccctaaatat ttctttctaa tctcatcatc acctattaaa
     1261 tttttagcct cgttttccat tacaatgcga ccattttcca aaacataagc ataatcactt
     1321 atttttaatg cagaataagc attttgctct accaaaagaa tagttatacc ctcttctttt
     1381 aaacgcacaa taatatcaaa aacttcaccc acaatctttg gagcaagtcc caaagaaggc
     1441 tcatccaaca tcaaaagttt tggttcactc attaaagccc ttgaaatcgc aagcatttgc
     1501 gcttcccctc cactcaatgt tccagctaaa gcatgctttt tacttgcaag tcttggaaaa
     1561 agtttataca tttgctctct taaatgctca taattttcag cattattaaa agcacctatt
     1621 tttaaatttt cctctacgct taaattaata aaaacacgcc ttccttcagg aactaaagct
     1681 ataccttttt gaactaaagt atgagttaaa tgccttttag tatcataacc taagaaatta
     1741 acctcaccag ttcttttaac tgagtttaaa agcgcattta aagttgaagt tttacctgct
     1801 ccatttgaac ctataagaga aacaatatga cctgtttcca ctttaaaatc aatcccttta
     1861 acagcttcaa ttaatccata ataaacatgc aaatctttaa ctattagcat caaaatcccc
     1921 taaatacgca gcaattactt ctttatgatt tacagcatcg caaagtttac cttcaaaaat
     1981 tgtttttcca taatcaagta ccaatacgcg atcacacaat ttatttacaa atttcatatc
     2041 atgttctata agcaaaacgc taattttata atcttttcgt aatttaaaaa tgagcccagc
     2101 aagttcatca ctctcagagc tattcatccc agcggctggc tcatcaagca ataataatct
     2161 tggttgagta gccattgctc ttgcaatctc aacttttctt tgttgtccat aactcaagct
     2221 agtagccttt tcataggcaa attctgcaat accaagttct tctaatattg cataagcctt
     2281 ctctttaaat acttgttcta tttttccaaa acgccctaaa tgcaaaaagg cttcaaaaat
     2341 attatatttc atttgtttat taaaaccaat aagaacattt tcaagcacat tcatgcttga
     2401 aaaaagccta atattttgaa atgttctagc tattcctaaa tgcacaatct tatgaggttt
     2461 taagtgatca attctttctc ctagaaattc aaccgaacct gaactaggtt tatagttacc
     2521 tgttataata ttaaaaagag ttgttttgcc agccccatta ggtccaatta aagcaaaaat
     2581 ttcaccctca ttgattttaa aagaagtttc attaatagcc ttaacactac caaaactttt
     2641 tgaaatttgt tttaattcca aaatcatttt ttgctccttt taaaacgctt tttaatccct
     2701 ctaatcacat cactcaactc ataataaccc attatgcctt ttcttgcaaa aagcattact
     2761 aaaatcagaa caatagaaaa aacaaccatt ctaagccctg gcgttgattg gatatcaaga
     2821 tttaaagaat ctatttttat atttaactca tctaaaaatc taagccactc acttccacca
     2881 ataaccaata tcgcacctat aatagcacct gtagtagaac caagtccacc taaaacaata
     2941 ataatcaaaa gctgaaaagt aagtaaaaaa tcaaattgag ttggagatac ggtagtcaac
     3001 agacaagcta aaagtccgcc acctacacct tctaaaaatg ctgaagtgct aaaagctaaa
     3061 gtttttatcc aaaaagtatt tattcccata gcgcttgcag catcttcatc atctcttata
     3121 gccttcattg cacgaccata tttagaataa actatattta aaattaaaat aaccgctaca
     3181 atagcaatac cacctgtcca atagatcgtg gaaaattgtg gaatatctac cagccctctt
     3241 gagccattag taatagaagg aaaattaata gcagctattt taataattat tccaaagcct
     3301 aaagttacaa tagccaaata atcccctctc acgcgaaata cagcaaaagc caaaatcagg
     3361 gcaagtaaag atgaacaaat tccagccaca attaaagcta gaataaagga atttgaatgg
     3421 atagctaaaa taaaagaact aggaccatct aaaaaaaact gatcattttt tgcatcagca
     3481 cttaaaagaa ctaaagcagc cgcataagct ccaatcgcaa caaatccatt gggttctagt
     3541 gaaaattgtc cagttacacc attaataaga ttgtaactca cagccaaaat aataaaaata
     3601 gcaatttgat taacaatgtt taatccataa tccccaaaaa tataaggaga aatgaaaata
     3661 aaaataattg aagcaattaa aaagattaaa tgtgaaacct taattctaac catcattaaa
     3721 acctactctt ttcaaaattt atacctaaaa ttcccgtagg cctaaataac aatataaaca
     3781 ccaaaaaaat aaaagcaaat gcatctttaa agcctgataa atctggaaaa aaagccacaa
     3841 caacaacttc agtaaatcct ataataagtc cacccaaaac tgcacctact acagaaccta
     3901 tacctcctaa aactgcagca gcaaaagctt ttaaacctat taaagttccc atagtaggtt
     3961 caacagagta ataatttgca gcccaaaaaa cacccccaac tgctgccaaa gctgaaccta
     4021 gggcaaaaac tatagcaata atacgatttg catctatacc cattaaattt actgtttgta
     4081 tatcaaatgc caaagcacga atagctatac catatttgct tttatacaaa atccataaca
     4141 ctgctattaa aataacaaat gtaagagcag gaaccattaa agaaccataa gttgttatca
     4201 ctccaccaaa attaacactt tcctcaaaat aacttggcgg tgtaaaagtt ctaggtgttg
     4261 aagtaaaaag catattaaaa agattttgca agaaaaaact aataccgatt gctgtaatca
     4321 acaatgaaat tctaggagcc tgtcttaaag gtttataagc gattctatct gtagctattc
     4381 caacacaagc agcaaaaatc attgctaaag acaaagctcc tagaaaagga acatttagat
     4441 tagtcatgca aaaaagagcc gcataagcac caaccatcat aatatcgccg tgagcaaaat
     4501 taataagtct taacacacca taaaccatcg tatagccaac agcaataaga gcatacatac
     4561 tgcccaaact aagtccatta acaagttgtt gtaaaaataa agtagaatcc ataatctttc
     4621 tatttttcct ttaaggattg ataatatctt tataattttg cttctgattt ttaatttctt
     4681 taaccactac agaacgagtt gcatttcctg tttgatcaat actgataaca ccagaaacac
     4741 cttgataatt tttagtttgg tgaatttttt cattgacaca cttactagta agattttcaa
     4801 cgcaagcatt catagcattt agcattacaa aatacgcatc agcacccata gccgaaaaat
     4861 ttggaacttc ttttgttcct ttagcttttt cataaacact gataaattct ttgcttaatt
     4921 ttgtagttgg attattagca tcaaaactat ctgtgaaaat ataaccctcg cttgcatctc
     4981 cagctaaact aataaaagtt tgatcagcaa ctccatctgc agaacccata ggaatattta
     5041 aacctgcgag ttttgattgt cttgcaaata aagaagcttc gctataataa agcggtaaaa
     5101 aaataaattc tggatttaaa cttttaactt gagctacaat agctctaaaa tctttatcac
     5161 ctgaattaac tcttaaaatt ctaagaattt gaccaccatt agacttgtac tgtttttcaa
     5221 aagcttttgc taaacctaag gaatagtcag tgctttgatc tactacaata acagcacttt
     5281 tgtaattaag ttttgaaaaa acatattttg ctaaagatga accttgaaaa ctgtccataa
     5341 aacatactcg agaagaatat atttttttat caagcaatct atcaccagtt gcagcaggag
     5401 cgatcaatgg aattttatta tcttctgcta cgcgcataac ttgcaatgta ttagcagtaa
     5461 ccatttcccc tataaggcct ataactttat cttgagaaac taaacgattt gctccactcg
     5521 aagattctaa tttatcacct ttagtatcaa taatagcaag agaaacctta tctccattac
     5581 ttaaagctga ttgcattgaa tttgcaagtt taatcccttc tagtgcgctt tgtccatatg
     5641 ctgcagtagc tccgctaagc ggtaaaacaa ctcctatttt gacttccgca gcacttaaac
     5701 ttaaacttag aatacttgct aaaattaaac tttttttcat tctctacctt tattttagta
     5761 attatggatt tataattgtt ttataatttt gtttttgatt ttgaatttct ttaatcacaa
     5821 cagaacgaat ggcattaccg ctttcatcta tgctaatcac accaccaaca gcttgaaaat
     5881 ctttagtttg atgaattttg ctattaatac attcgctgct aagattatca acgcaagcat
     5941 tcatagcatt taacattaca aaatacgcat cagcccccat agccgaaaat gctggaagtt
     6001 cttttgttcc tttaactttc tcataagctg caacaaaatc ttttcctaat tgtgtagatg
     6061 gactgttata atcaaaacta tcagtgaaaa ttactccatt aacagcactt ccgccaagat
     6121 ctataaaagt ttgattgtta acaccatctc ctgctactaa aagtttatca aaaccaattt
     6181 gtcttgcttg tctcgcaatt aaagcagctt caggatgata aataggcata taaacaaaat
     6241 caggatttaa actcttaagt tgagaaacca cagctctaaa atctttatct cctgaattaa
     6301 taacaagttt ttttataatt ttcccaccat tattcttaaa agaattttca aaagctcttg
     6361 ccaaacctaa agaataaaca ttgctttgat ctatgatgat aacagcattt ttaagtccta
     6421 aatccttaga tacataagta gcaaatttat ctccttgaaa actatcttta aaacaaactc
     6481 tacttgcata tttcttttta tctagcaatt tatctccaga tgccactgga gctattaggg
     6541 gaattttttt ctcttctgct atagaaatag cttgaatggt atttggagtt gtagcttcac
     6601 caataatccc aaggacttta tctgttgcta ttaaacgatt aactccattt gaagtttcaa
     6661 gcttatctcc ttttgtatct attgtgataa gtttaataac atctccattt gaaagttttg
     6721 gctgtagctt attagccagt tcaattccgt taaaaacatc ttgcccataa gctgccacag
     6781 ttccagttaa aggtaaaact actcctatat taatatcctt agcatataag caatttacca
     6841 tagttaaaac acttaaagtt aaagttagtt ttttcatagt attcctttta attatagttt
     6901 ttacatttta ttttagaaat atattatgtt ttgttttttg cgcaggttct tcttcaagaa
     6961 gatcttttac ttgcaaatca agcgcaaaat ttccaccttt aatataagca ataatattat
     7021 ctatatcctc gtggcttaaa tttctagcat aaaaagccat ttgagaagct gttgtagaac
     7081 tgctactatc aagagtataa cctatcaaag ctcctttaat atcctcagga gacatatctt
     7141 ttaaaattct agatcctata acactctttt cagcattatc tccatggcaa gtattgcatt
     7201 tattttgaaa atacaaagcc ttcgcttttt ccatatcata ttgcttattt gcatcaaagg
     7261 tataagtaaa aaatgatttc aagttaatac caaaaagcgc aacaacaaat attgaactaa
     7321 taaacaacca gcgtgcaatc atgattttcc ttattttatt gtaatttctg tttgtgtttt
     7381 attttgatat ctatgtgttt ttttgttgta ttttttttct tttttaatat catagcgata
     7441 acgaacagtc cctgaaactt ctatatcttt aaagacttca tctaacggag ctgcaaaaac
     7501 aaaatgattt aaaatcatac caattaaaaa tatttttttc atttttattc tttaaacaca
     7561 aaaaaacgat tatatcaaaa aaagataatc cttgttaatg accacctttg tgtaaaaaat
     7621 aaagtcctac acaaagagct aaaatcgatc cagcaagaaa agccatatcc acaggagtag
     7681 caaatttcat ctgtaaaacc ctttgaaaga aatttaccac taagaccata atgataactt
     7741 ttgcaagctt gtcttttaat tgatctaagc tatgcacctc taaaaccttg ctttgttttg
     7801 tttgtttaaa ttcttctatt tcactgataa aaagctcata aactccaaaa gaaaaaataa
     7861 acaaaactaa agccataaga taaagatcaa cagctcctat aattaaagcc accacatcct
     7921 catgcaaatc gacattagaa cctgcatcaa aaaaataatt ataagtataa aatataactt
     7981 ttaaaacatc ataacttgca ataaaaaaca atacaaaagc tccaattaaa ccaaaaatta
     8041 cgggtaaaat tgtaacaata cgacttctaa caagtaaaga ttcaaatatt ttctctaaca
     8101 tttttttcct tatttatttt ttaattctaa ccatttttgc gcaatacgca cagcatttgt
     8161 tgcagcacct acacgaattt gatccgccac acaccaaaga tggagtattt ttttatcata
     8221 cacatcagca cgaattcttc ctacataagt ttcattagta tcgctagtca ttaaaggcat
     8281 agggtatttt ttatttttag gatcatctat gacaataaca cttggtgctt tttttaaaat
     8341 ttctttagct ttttttacat ctatttcttt ttcaaaatgc atagtaatgg cttcgctatg
     8401 acttcttaaa acaggcactc taacacaagt tgccgaaact tctaaatttt tatgtaaaat
     8461 tttttgagtt tcattgacca ttttaagttc ttctttagtg taatcattat ccataaaaac
     8521 atcaatttgt ggaataagat taagtgccaa agtataagga aaagtttgag gttcaaattc
     8581 atcaagttta aaagcaaaaa aactttgcat agcttcaacc aattcttgca ttccttcttt
     8641 tcctgctcca cttgcagcct gataggtact tacatcaaca cgctttaaat taaatgcatc
     8701 atttaaaggt tttaaaactt gcaccatttg tatagtagaa caatttggat tagcaataat
     8761 ccctgttttt ttccaatctt taatatcctc aggattgcat tcaggaacca ccaaaggaac
     8821 atctttttcc attctaaaat gacttgtatt atcaataaca acagcaccag attctactgc
     8881 aaatttagca tatttttcac tcacacttcc acctgcgcta aaaaaagcaa tatcaatagg
     8941 attttcttta aatacatttt cggtaagttc tttgacttta taagctttgc ctttaaattc
     9001 tacttcacta cctacacttt ttgcacttgc taaaggtaaa atactttcca ctgggaaatc
     9061 aagttcatct aaaacattta aaagctcttc cccaaccgca ccagtagcac ccacaatggc
     9121 tattttttgt ttttttgaca ttacttatcc tttatttgat attttttaat tttttcattt
     9181 aaaattttta tatccatacc taaaatttga gaagcttgat ccttgtcata atctacactt
     9241 aaaagaactt cacaaatcaa ttctttttct aaattcttta catctttttt tatacttcta
     9301 gcttctaaga acaaatcttc acttgaaatt tcatcatttt cacttaaaat acaagctctt
     9361 tgtacaacgg atattaattc tctaatatta ccaggaaaat catattcaag taaagcattt
     9421 ttagcttctt ggctgagctg tttttcctta aaatcatatt ctttacaagt atcttctaaa
     9481 accttttgag ctatacctaa aatttcttct ttacgctctc ttaaaggcgg gatattaata
     9541 ggaacagtgt ttaaacgata atataaatct gaacgaaatt cgccattttt tattttttca
     9601 tctaaatttg cattagttgc actgataatt cttacatcta ttttgatgct ttttgtactt
     9661 ccaagtcgtg tgatttcttt ttcttgcaaa gctcttaaaa gtttagcttg aatttcataa
     9721 ggcatttcac caatttcatc taaaaacaaa gtgccctcat tagccatttc aaaaagccct
     9781 attttagttg cattagcatc agtaaaagca cctttttcaa aaccaaaaag ctcactttca
     9841 atcaaatttg caggaatggc tgccatatta atagcaataa aaggcttatt agagcgttta
     9901 gaatgggtgt gaatataacg agaaaatacc tcttttccta ctccactttc tccaaaaaac
     9961 attacagagg catcagtttt agccgctttt tgacttaaat ttaatgtttt ttctaaatta
    10021 ggagaagttg aaaaaaaatc tttattttct tctttttttt catttttttt gcttttttta
    10081 tcggctgttt tttctcttat gattttagca cgcttaatag cctcgactaa agtatcaaca
    10141 tcaaaaggct tggttaaaaa atcttttact cccaaacgaa ccgcttctat agcacggctt
    10201 aaagtagcat ttcctgtcat aataataaaa tcatatttat tttcacaggc tttaacaaat
    10261 tctatgccat caattcctgg catattaata tctgtaataa tcaaatctgt attatcatct
    10321 atttttttta aagcttcagt ggcagattta taagatttaa tattaaattc ttcatactct
    10381 gctaatgcaa tttctaagga tttgcgcata ttaatatcat cttctactat gactaaattc
    10441 atcctaagcc ttttaaaaaa tttctactat agtatccaat ttgcgcttaa ttttgaattt
    10501 actttttttt aagataataa attatcgcat tttgttcgcc aaattctacg gtaaaacgca
    10561 agggtaaaat tttaacataa gtttcacttt gagcacgtaa taagtcagta ttaacaatat
    10621 ccttaacact gattctagct cctataaagc aatcgcttaa ttcatcttta tgagaattta
    10681 aaaaattaaa tttaattgtt tttggcatat tatcatcaat caatcctaaa gaagttcgag
    10741 gtaaaacttt taaatcttga tcactataag aaatttcaca tacccattgt tcttcaacat
    10801 tttcgctttg cgtcattgct aaggataaat tttgattttg atgaaagaga atgaaatttt
    10861 tactagaaag ctctgcccaa aaaataaatt catcttgggc aaaaagctta aagctaagaa
    10921 agattaataa gcaaacaatt ctttccactt gtctgcatcg attttaagtt ctaagtttac
    10981 tctataaagc ccttgattaa aattctcatc aataatactt gcatttttta tcaaaccatt
    11041 tacttgcgca gtaatagttg aacttctaag cattgcatct tttacagtgt ctttaccatt
    11101 cactttcaca ccataaagtt tacttgcaag ctgtctgtaa gcatctgtaa tcgctgctct
    11161 ttttgctaaa gctagagctt gagcagtaga aactgtattc attggagcaa ttccttcacc
    11221 aactgctgta aaactaagtt ccgtttcgct agcatctgga gccaacattt tttcttctct
    11281 gataatatca cgcacatcat ctttatcgac tttttgcacg ataacatctt gagatggagc
    11341 agtgctattt gcacttgaat ttttagttgc actgtttgca cttggtacac aaccagcgaa
    11401 aattcctgct attgctagca taaaataaat ttttttcatt tttacacctt caaaatattg
    11461 taattagtaa aataaaaagc aataagcgtt ccaactttaa acttattgca aatctaaacc
    11521 aaagttttca tcgcttaact catcctcgtc attttcctct ttaggacact tagcgatgct
    11581 aaccacctcg tcattttcca cattaactac aatgacacca ctcgtattac gccctgcttt
    11641 tctaatgctt tgcatatcaa cacgtatcat cttacctgaa cttgtaagag ccattaaatc
    11701 catagtttca tctactataa ctacgctaat aagatctttg gttttttctg taagtttcat
    11761 acaaattaca cccttaccac ctctgctttg caatctatat tctccagcat tggtgcgttt
    11821 tcctatacct tttgcactta tgcttaaaat ttcttgctca tcattttcta taacaactgc
    11881 acctactaat tcgtcatttt tctctttaaa cttaatagcc gtcactccac gacttacacg
    11941 gccgatttca cgcactttag caagtgggaa tttgatacac ataccttttt tggttactgc
    12001 aaagagcatt ttaccttgtg tgcttacact ttcttcattt tcaagatttt catcatctaa
    12061 attttcaatt tcttgatttt ctaaattttc ttcaccacca gtggcaaaaa tttcatcttc
    12121 atctctttga acaataatag cagttaccaa ctcatcattt tcatccaagt tgatcgctct
    12181 aactcctaca cttctgatat tttgatattc actcaaattt gtacgcttta caataccatt
    12241 tttagtaaag aaacataaag atttactctc atcaaaatcc gtggttggaa taatagccat
    12301 gattttttct tcagcttgta aattaataag atttaccact gcttttcctt tagccgttct
    12361 tgagccttca ggaattttat aaactttaag ccaataaagc tgtccacgat ctgttacaaa
    12421 cataagtgta tcatgtgtat ttgccgtaaa gaaactttct ataaaatcat catcataagt
    12481 cgtaacggct aattttcctt ttccgcctcg tttttgcttt tcatattgtt tactaggcac
    12541 acgcttaata taaccacgat gcgtaatagt tacaaccata ttttcattag gaatcaaatc
    12601 ttcaatatca atatcatcat aatcatcttc aatttgagta atacgtggca catcaaattt
    12661 acttctaatt tcttttaatt catcgcgaat taaattttca agcaaggttt cactttttaa
    12721 aatttcttca agtcttgcaa tttctttcat taattctgca agttcatttt cgattttttc
    12781 tctttcaagt cctgttaaac gaccaagttt catatctaaa atagcattgg cttgaagctc
    12841 actaagacca aatttagcta ctaaagaatc tcttgcggta ttattatcag aactattttt
    12901 aattaaagca atcacttcat ctatattatc aagtgcaatt ttaagacctt ctaaaatatg
    12961 agctcttgct cttgcctttt gaagttcaaa aatcgttctt ctaataataa ctgtttttct
    13021 atgagttaag aaaagattta aaagttccaa caaagagaaa attttaggtt ctttattatg
    13081 aattgccaac ataatcacac caaaagtact ttccatagtg gtagatttaa atagattatt
    13141 taaaacaatt tcactcatag cctcacgttt aagctctata acaacgcgga ttccttcttt
    13201 attgctctca tctcttactt cagatattcc ttcaatttgc ctttctttaa caagctctgc
    13261 aatctgctct ataagcctag ctttattggt ttgataagga agctcatcga taacaataac
    13321 atctttattt gtcttttttt caatatgagt tttagctcgc actttcacgc gaccacgccc
    13381 tgtgcgataa gcttctataa tacctttttt accataaatt attccacctg ttggaaaatc
    13441 tggacctttg ataaactgca taatctcttc taggcttgca tctttattat caagcaaata
    13501 taaaagtcca tctatcaact catttaaact atgaggtggg atgtttgtcg ccatacctac
    13561 agctatacca cttgaaccat ttaataataa atttggaacc ctagaaggta aaacatcagg
    13621 ttcgctttct gaaccatcat aatttggaac aaaatcgacc gtatctttat ctatatcttt
    13681 taaaagctca tgagaaagtt tactcatttt tgcttcagta taacgcatcg cagcggcact
    13741 atcaccatct atagatccaa agttgccttg tcctgtaata cttggatatc tcatagaaaa
    13801 atcttgagcc attctaacca aagcatcata aactgctgta tctccatgtg ggtgataacg
    13861 acctataaca gcacccacta tacgggctga tttgacaaaa tctgttctac tttttgcctc
    13921 atcattttgc atagcatata aaattcttct atgaacaggc tttaaaccat ctcttgcgtc
    13981 aggcaaagca cgacctataa taacactcat agaatagtct aaataactac tttttataga
    14041 attttctata tctacaagtt caatatcaga atctttgcta aaaatattct ccataaaaat
    14101 ccttctatta gttcaaagtt ttgattatag catattaaac ttttgcatca gctaaaacaa
    14161 gagcaaaaag tacagaaatt ttattttctt ctaaaacttt tttagcttcc aaaaggctag
    14221 aaccagttgt tacaatatca tctactaaaa ttacaggttc gtgaatggtt tttaagagtt
    14281 tgtaatttct tttatgtttt tgacgaaatt ctaaactttt tccagaatat ttcacagaat
    14341 tttgtgcttt taaaacatta aaaacaggtt ttacaaattt tgttttaaga tatctagcta
    14401 aaatagcaga atgtgaataa agcatatctt caaccttatc atctaaagct ataacattaa
    14461 ttgtcattct aggatcaaaa aaatctttaa attttgcaaa acttaattta gcaagcattt
    14521 tataaacaaa ataaccataa aaataatgtt tagagtgaag caagtgttgt atttcatggt
    14581 atttataaaa agaatagact ttgaaattat tatcaagctt tcttacattt aaggaaaatt
    14641 cagaaagctc tagctcgcat aattcacaaa agcagagcag agcaaaagct ccgcaattta
    14701 tacacctcaa agttcagaga ttaaactagc tgctttattt gccatttgtt ttattaacaa
    14761 atgagtataa aaagttgttt cttttaaatc atcaaaacct tgtacatctt gcttggtgcg
    14821 gattgtaaat ttcttatttt tatttatatc actaacttgt aaaactccta ctagttttga
    14881 atgtaatcct atagcatctt gagttgctcc ataagatata aattctaaat caatcttact
    14941 cacataaggt gaattttgat cgttattgtc aagcacaact attcctctag cttcaagttc
    15001 ttgttttaaa taagtataaa ataccgcatt aaaattcaca tcgacaaata actttttccc
    15061 tttagcattt aaaacctttt gcccttcttt taaatcataa aatctatgta aataaacctt
    15121 tttcaaagca ataccagtgt ctaaagtgcg tttattggca caacattgaa ttccaacatc
    15181 gctaatgtat aaaagccctt taatctttgc ttcaaaacca ccaggacttt cacaagaact
    15241 gcattgagaa tttttagaaa tttgattaac ttgagcaaaa gtatcttgtt tagttgcaca
    15301 agcactcaaa aataaaatag gcactataaa aatcaaaaat tttttaaaca ttttttctcc
    15361 ttagaaaatt attttaaaat tgtattaaaa atacaagcaa atttcaagcc aagttttaaa
    15421 tttatcatca atctatcttt aaaacactca aaaaagcctc ttgaggtaaa tttaccttac
    15481 ctatagcttt cattcttttt ttaccttctt tttgcttttc taaaagcttt ctttttctag
    15541 taatatcccc accataacat tttgctgtca catttttacc catggattta acagtttctc
    15601 ttgcgatgat tttatttcca atacttgctt gaatggccac ttcaaaaagc tgtctaggaa
    15661 ctatttcttt catagcacta acaagttctc ttcctttact ttgcgctttt tcattaggca
    15721 cgataatgct taacgcatca acattttcac ccgctacctt aatatcaagt tttaccaaat
    15781 cccctactct aaattctata ggctcataat caaaactcgc ataacctttt gttaaggact
    15841 ttaatttatc ataaaaatcc atcacaatct catttaaagg cacatcatat tctagcaaaa
    15901 cacgctcagg tgtgatatag tccattttaa cctgcactcc tcttttgcga tttaaaagag
    15961 tgattaaatt ccctaaaaat tcacttggag taatgatagt agctttaaca taaggctctt
    16021 ttatatgatc gattttatta acaggaggaa gctcgctagg attttgaatt ttaataagct
    16081 ctccatcggt ttgataaatt tcgtaagtca cagttggagc tgtagcaatc aaatcaagat
    16141 taaattctct ctcaagcctt tctttgataa cttccatatg taaaagccct aaaaatccta
    16201 ccctaaaacc aaagcctaag gccaaagaag tttcaggctc ataagtaata gaactatcat
    16261 taagctttaa tttatccaaa gcatctctta aatcttcaaa tttatccgtt tctataggat
    16321 aaagtcccgc aaacacaaaa gctttagcct tttcaaaacc acctatggct tctttagctt
    16381 tgttttttac caaagtgatg gtatcgccta cttgtacatc acctacggtt ttaagcccta
    16441 aaaccaccac acctacttcg cctgattgta aagattgagt tttaattgga cttaaagggt
    16501 ggggataaaa aagatcttga actatatgtt ttttatccgt actcatgact aaaacttcat
    16561 cgtttttagc aatacttcct tcataaatcc taaccaaagc caaagcaccc aaataattat
    16621 caaaccaaga atcataaatt aaagccttag taggagcttc atcatctgtt tttggtgcag
    16681 ggattttagt aataattgtt tctataagct cttttatacc cactcctgtt tttgcactca
    16741 cgcaaattgc atctttgcaa tctataccta taatatgctc gatttcatgc tttactttct
    16801 caacatcagc attaggtaaa tcgattttat taatcacagg aatgatttca agattatttt
    16861 caagcgctat ataaacatta gctatagtct gtgcttcaac accttgagaa gcatctacta
    16921 caagcaaagc cccttcacaa cttgccaaag aacgactcac ttcataagaa aaatccacat
    16981 ggccaggagt atcaataaga tttaaaacaa aattttcatt attaaattta taatttaaac
    17041 gcactgattg tgcttttatg gtgataccac gctctttttc tatatccata gtatccataa
    17101 cttgtgaact catctgccta tcgctaatag caccacactc gctaataatc ctatctgcaa
    17161 gagtagattt tccatgat
//
LOCUS       DAPIWQ010000018        17116 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.018, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000018 DAPIWQ010000000
VERSION     DAPIWQ010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17116)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17116)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17116
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.018"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            66..1061
                     /locus_tag="RJ267_000451"
     CDS             66..1061
                     /locus_tag="RJ267_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide synthesis protein"
                     /protein_id="HDV7388334.1"
                     /translation="MQIQQNNSLIYNTLTKKLSSFIPIKSTRRKLRNHIQYKLEHPKV
                     TNYLSNNYINPFLEGKIPHFDFEKKHYFKNDKIIWQFWYQGKNQASPMIQQCFNSVQS
                     QMKDDYTIIILDKDNIKDYLDFPPFVIEKLENNFFGEKTITFFSDLLRVCLLATYGGI
                     WCDASIFLSSKIPSELCDKDFFTFERSKIKPSKEKLKKFIKSGYFSYGYFNWNDDFKV
                     KMLSSFMIAKTNNTFIQTLKDILMNYWKNEQSSENHYYFILHIIFELLKEHGFVNDIY
                     KNMSDIECHLLQFSAKEKFNSTLWEEIQKQSFLHKLTHFKSIKKDSMIDKIILQS"
     gene            complement(1045..2217)
                     /locus_tag="RJ267_000452"
     CDS             complement(1045..2217)
                     /locus_tag="RJ267_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDV7388335.1"
                     /translation="MKKVGVVIPIYNVEKYLKECLDSVINQTYTNLEIILVNDGSTDE
                     NSLNIAKEYTLKDKRIILFDKKNGGLSSARNVGIEYFSGEYETQYIEKENELNVFKII
                     GDNPQNIYKIYKYKNALASDKLEISKIDYIIFLDSDNYWELNCIEECVVRMQNVDVLW
                     FDHACIYDDGIEDKGQKTRMNVFNFTQECTITPRDYAKQAIKVGSRDISFSWGGMIDF
                     SFLKQLKLKFINKIINEDIHFGMVLFASADSIYILPKRLYLCRLRANSISNHDKKVTK
                     ANVSEYFKDLYEFFGENAKEAKNYLKAASRMITALELIEFFKDQKNENSQAIKEAFLP
                     FYVKKALMIKKFKKDPLNLKEKLPIIKPFIQTKIPYDLWKIWQKIKGILDKINFAK"
     gene            complement(2221..3768)
                     /locus_tag="RJ267_000453"
     CDS             complement(2221..3768)
                     /locus_tag="RJ267_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDV7388336.1"
                     /translation="MNLKQISAIIIVKNAKQTLLECLNSLKDFDEIILLNNESSDNTL
                     NIANEFKKDFANLHIYHSAFIGFGALKNLALSYAKNDWILSIDADEVLENECIKELKN
                     LELQEDNIIALSRKNLYKGEWIKACGWWPDYVWRIFNKNFTRFNDNLVHESLVLPSNA
                     KKIYLKNGLRHYAFRDISHLIDKMQYYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYF
                     LKNGFLYGYKGFIISVCNALGTFFKYMKLYELQKQKPKTCALIITTYNQKERLKLVLD
                     SVKNLAFLPNEVLIADDGSKEDTARLIEEYQKDFPCPLKHIWQEDEGFRAAKSRNNAI
                     KASKSEYIILIDGDMILEKDFVKNHLEFAKRKVILQGSRVILNKNESEEILKNNNYSL
                     AFNKKGFKNQRSIFLAKCVYKFSKLTKKFFKKSQLVKGSKTCNMSFYKSDFEAIEGFN
                     EKFIGWGREDSEFVARFLFNDGVFKRLKFNALAYHIYHEENSKNMLEINHQIYLETIK
                     NEKTTWR"
     gene            complement(3765..4652)
                     /gene="htrB"
                     /locus_tag="RJ267_000454"
     CDS             complement(3765..4652)
                     /gene="htrB"
                     /locus_tag="RJ267_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase
                     HtrB"
                     /protein_id="HDV7388337.1"
                     /translation="MKNSDRIYLSLYYILKFFVTFMPECILHFLALIVARIAFYLNKK
                     HRKIINTNLQICFPQYTQKERDKLSLKIYENFAQFGIDCLQNQNTTKEKILNKVNFIN
                     ENFLIDALALNRPIIFTTAHYGNWEILSLAYAAKYGAISIVGKKLKSEIMYEILSQSR
                     TQFDIELIDKKGGIRQMLSALKKGRTLGILTDQDCVENESVRLKFFNKEVNYQMGASL
                     IAQRSNALIIPVYAYKEDGKFCIEFFKVKDSQNASLEELTLYQAQSCEEMIKKRPWEY
                     FFFHRRFASYNKEIYKDAK"
     gene            complement(4642..5670)
                     /gene="waaC"
                     /locus_tag="RJ267_000455"
     CDS             complement(4642..5670)
                     /gene="waaC"
                     /locus_tag="RJ267_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HDV7388338.1"
                     /translation="MKIAIVRLSALGDIIQSAVVLQFIKNFKKDIEIHWFVDEKFEGI
                     LKNHPLINKLYALPLKDKKILKSLKILLKARKNNYNAVIDLQGLIKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLELDYNENVFVRYLSLTSFMLNTDFNVKNLAFKQDIFS
                     VDENLKQLLNNKLKLDKNEKNILIHVGSSVENKIYPKTKLAILCKLLINEFQQTKIWL
                     AWGNVKEYEFAKEVLNLSGIDETHIELAPKFNLEELMAFTKMMNLIIGNDSGPTHLAF
                     ALNKASITIFGATPSYRNAFQTHINKIIDAGKKIQNAKHIDKSDFCITRIEEEDIFKL
                     AKGLLNEK"
     gene            5736..6530
                     /locus_tag="RJ267_000456"
     CDS             5736..6530
                     /locus_tag="RJ267_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HDV7388339.1"
                     /translation="MAKNEGYICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQWQK
                     EQSGSEFLPLPYHKIISICAVLSDNFGKFIKVNKIDGQNEKEMIENFFNFIENYEPKL
                     VSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLESLGSNG
                     RGIKLDTLCSMVGLPGKYDVHGDEVMKLFYENKLEKIHEYCESDVLNTYMLFLKYELI
                     KANVDEEDYVGFLSYMRDFLCAKKSDRSYTEVFAKACESEISKVRS"
     gene            6588..7574
                     /gene="galE"
                     /locus_tag="RJ267_000457"
     CDS             6588..7574
                     /gene="galE"
                     /locus_tag="RJ267_000457"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HDV7388340.1"
                     /translation="MKILISGGAGYIGSHTLRQFLKTDHEICVLDNLSKGSKIAIEDL
                     QKTRAFKFFEQDLSDFQGVKALFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNT
                     TNLIETCLQTGVNKFIFSSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVLRDA
                     SMANPEFKHCILRYFNVAGACMDYTLGQRYPKATLLIKVAAECAAGKRDKLFIFGDDY
                     DTKDGTCIRDFIHVDDISSAHLAALDYLKENESNVFNVGYGHGFSVKEVIEAMKKVSG
                     VDFKVELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLELICKSAFDWEKQC"
     gene            7568..9262
                     /gene="pglK"
                     /locus_tag="RJ267_000458"
     CDS             7568..9262
                     /gene="pglK"
                     /locus_tag="RJ267_000458"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HDV7388341.1"
                     /translation="MLKKLFFILSKEDKNFLFFLLVFSVFISFIETFAISLVMPFITL
                     ASDFSYFDRNKYLISLKEYLNIPVFEIIVYFGVGLIVFYVFRALLNAYYFHLLARFSK
                     GRYHAIAYKVFSKFLNINYEKFTQKNQSEILKSITGEVYNLSTMISSFLLLMSEIFVV
                     LLLYALMLLINYKITLFLSIFMVLNAFILVKILSPIIKKAGVRREEAMKNFFEILNTN
                     LNNFKFIKLKTKEDGVLSLFKAQSEAFSKANITNESVAAVPRIYLEGIGFCVLVFIVV
                     FLVLKNESDISGILSTISIFVLALYRLMPSANRIITSYHDLLYYHSSLDIIYQNLRQE
                     EENLGEEKLSFNQELKICNLSFGYEGKKYLFKNLNLNIKKGEKIAFIGESGCGKSTLV
                     DLIIGLLKPKEGQILIDEQELNANNTKNYRQKIGYIPQNIYLFNDSIAKNITFGDAVD
                     EEKLNRVIKQANLEHFIKNLPQGVQTKVGDGGSNLSGGQKQRIAIARALYLEPEMLVL
                     DEATSALDTQSEAKIMDEIYKISKDKTMIIIAHRLSTITQCDKVYRLEHGKLKEEK"
     gene            9259..10338
                     /gene="pglH"
                     /locus_tag="RJ267_000459"
     CDS             9259..10338
                     /gene="pglH"
                     /locus_tag="RJ267_000459"
                     /EC_number="2.4.1.292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-
                     diNAcBac-PP-undecaprenol
                     alpha-1,4-N-acetyl-D-galactosaminyltransferase"
                     /protein_id="HDV7388342.1"
                     /translation="MMKISFIIATLNSGGAERALVTLANALCKEHEVSIIKFHAGESF
                     YKLENEVKVTSLEQFRFDTLYHKIASRFKKFFALRKALKESKSDVFISFLDTTNIACI
                     AAKIGLKTPLIISEHSNEAYLKPKIWRFLRRVSYPFCDALSVLGSSDKVYYERFVKRV
                     KLLLNPCHFSDEISFDSSFEKENLVLFIGRLDHNKNPVMFLKAIAHLDKNLQENYKFV
                     IAGDGQLRQELEYKVKSLGIKVDFLGRVENVKALYEKAKVLCLCSFVEGLPTVLIESL
                     YFEVCRISSSYYNGAKDLIKDNHDGLLVGCDDEIALAKKLELVLNDENFRKELVNNAK
                     QRCKDFEISHIKEEWLKLIAEVKNA"
     gene            10331..11260
                     /gene="pglI"
                     /locus_tag="RJ267_000460"
     CDS             10331..11260
                     /gene="pglI"
                     /locus_tag="RJ267_000460"
                     /EC_number="2.4.1.293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc(5)-diNAcBac-PP-undecaprenol
                     beta-1,3-glucosyltransferase"
                     /protein_id="HDV7388343.1"
                     /translation="MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDD
                     TKSVVQNLQKDDDRIKYFLNQNYKQGPNGNKNNGLDQASGEFVTFLDDDDELLSGALS
                     TLMQKANEGYAHVFGNCLIEKEGNLSKEFSGKGLEKDSEISKKDFLMAKFSGEFFSVF
                     KKSLLENKRFNEEFYGNEATLWVNLYKEKSFYIHKAFRIYRIFRQDSVTLGASKNAYR
                     VYLGYLELAKILENELRMSKDKDYKKTCASYYKMAAYYAKLAKNYKALYKCLFKSLSI
                     KINAPALILLILSIIPNNMIEKLSKIRVALCKN"
     gene            11248..12345
                     /gene="pglJ"
                     /locus_tag="RJ267_000461"
     CDS             11248..12345
                     /gene="pglJ"
                     /locus_tag="RJ267_000461"
                     /EC_number="2.4.1.291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylgalactosamine-N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     4-alpha-N-acetylgalactosaminyltransferase"
                     /protein_id="HDV7388344.1"
                     /translation="MQKLGIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EIPECQIHFLECSKPSENPILKFLKLPFLALKYKKLCRNLGIDTEFVFLNRPNYIALM
                     ARMFGNKTRLVINECTTPSVMYMKNNFNSLVNKFLISLLYPKADLILPNSKGNLEDLV
                     QNFSISPKKCEILYNAIDLENIGQKALEDIALKDKFILSVGRLDKGKNHALLIRAYAR
                     LKTDLKLVILGEGVLKDELLALIKELNLEEKVLLLGFDNNPYKYMAKCEFFAFASVFE
                     GFSNVLIESLACSCAVVCTDHKSGARELFGDDEFGLLVEVDNENSMFQGLKTMLEDDK
                     LRKAYKNKAKTRAKAFDKVKIARDALKYLLG"
     gene            12349..14490
                     /gene="pglB"
                     /locus_tag="RJ267_000462"
     CDS             12349..14490
                     /gene="pglB"
                     /locus_tag="RJ267_000462"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HDV7388345.1"
                     /translation="MLKKEYLKNPYLVLFAMIVLAYVFSVFCRFYWVWWASEFNEYFF
                     NNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSTLTYWLYKITPFSFESIIL
                     YMSTFLSSLVVIPIILLANEYKRPLMGFVAALLASVANSYYNRTMSGYYDTDMLVIVL
                     PMFILFFMVRMILKKDFFSLIALPLFIGIYLWWYPSSYTLNVALIGLFLIYTLIFHRK
                     EKIFYIAVILSSLTLSNIAWFYQSAIIVILFALFALEQKRLNFMIIGILGSATLIFLI
                     LSGGVDPILYQLKFYIFRSDESANLTQGFMYFNVNQTIQEVENVDFSEFMRRISGSEI
                     VFLFSLFGFVWLLRKHKSMIMALPILVLGFLALKGGLRFTIYSVPVMALGFGFLLSEF
                     KAILVKKYSQLTSNVCIVFATILTLAPVFIHIYNYKAPTVFSQNEASLLNQLKNIANR
                     EDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNFFPSFSLSKDEQAAANMARLSVEY
                     TEKSFYAPQNDILKSDILQAMMKDYNQSNVDLFLASLSKPDFKIDTPKTRDIYLYMPA
                     RMSLIFSTVASFSFINLDTGVLDKPFTFSTAYPLDVKNGEIYLSNGVVLSDDFRSFKI
                     GDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIFYLKDSAIPYAQFILMDKTMFNSA
                     YVQMFFLGNYDKNLFDLVINSRDAKVFKLKI"
     gene            14500..15630
                     /gene="pglA"
                     /locus_tag="RJ267_000463"
     CDS             14500..15630
                     /gene="pglA"
                     /locus_tag="RJ267_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HDV7388346.1"
                     /translation="MRIGFLSHAGASIYHFRMPIIKALKDRKDEVFVIVPQDEYTQKL
                     RDLGLKVIVYEFSRASLNPFVVLKNFFYLAKVLKNLNLDFIQSAAHKSNTFGILAAKW
                     AKIPYRFALVEGLGSFYIDQGFKANLVRFVINSLYKLSFKFAHQFIFVNESNAEFMRN
                     LGLKENKICVIKSVGINLKKFFPIYVESEKKELFWKNLNIDKKPIVLMIARALWHKGV
                     KEFYESATMLKDKANFVLVGGRDENPSCASLEFLNSGAVHYLGARSDIVELLQNCDIF
                     VLPSYKEGFPVSVLEAKACGKAIVVSDCEGCVEAISNAYDGLWAKTKNAKDLSEKISL
                     LLEDEKLRLNLAKNAAQDALQYDENIIAQRYLKLYDRVIKNV"
     gene            15623..16225
                     /gene="pglC"
                     /locus_tag="RJ267_000464"
     CDS             15623..16225
                     /gene="pglC"
                     /locus_tag="RJ267_000464"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HDV7388347.1"
                     /translation="MYEKVFKRIFDFILSLVLLVLFSPVILITALLLKITQGSVIFTQ
                     NRPGLDEKIFKIYKFKTMSDERDEKGELLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLPLYNKEQKLRHKVRPGITGWAQVNGRNAISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTEKFNGKN"
     gene            16212..16799
                     /gene="pglD"
                     /locus_tag="RJ267_000465"
     CDS             16212..16799
                     /gene="pglD"
                     /locus_tag="RJ267_000465"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HDV7388348.1"
                     /translation="MARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFES
                     TLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPY
                     VVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL
                     PNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM"
     gene            16756..>17116
                     /locus_tag="RJ267_000466"
     CDS             16756..>17116
                     /locus_tag="RJ267_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388349.1"
                     /translation="MKKVFLWEYLQKGCKLHFNNNLVVHYIVNPSPLGWIVINLLTIC
                     LICYIFPLKNSLKHKKLFSLKANVNSKNSRIIKYTGIAAFLGGLIGIWYNFEGFYQLL
                     FFFELENENLKTLWSLQV"
BASE COUNT         5827 a         2134 c         2817 g         6338 t
ORIGIN      
        1 gttttcatat atacataacc ttaattattt ttgatattat atcaaaaaac tttttaggaa
       61 tatatatgca aatacaacaa aacaattctt taatttataa tactttaaca aaaaaactaa
      121 gctcatttat acccataaaa tcaacaagaa gaaaattaag aaatcatatt caatataagc
      181 tagaacaccc taaagtgact aattatcttt caaacaacta tattaatcct tttttagaag
      241 ggaaaattcc tcattttgat tttgaaaaaa aacattattt taaaaacgat aaaattattt
      301 ggcaattttg gtatcaaggt aaaaatcaag cttcacctat gatacaacaa tgttttaact
      361 ctgtacaaag tcaaatgaaa gatgactaca caattatcat tttagataaa gataatataa
      421 aagattacct tgattttcca ccatttgtta tagaaaaatt agaaaataat ttttttggag
      481 aaaaaactat aacttttttt tcagatcttt taagagtatg cttgcttgca acttatggag
      541 gtatatggtg tgatgcaagt atatttttaa gttctaaaat tcctagtgaa ctttgtgata
      601 aagacttttt tacctttgaa agatcaaaaa taaaacctag taaagaaaaa ttgaaaaaat
      661 ttatcaaaag tggatatttt tcttatggat actttaactg gaatgatgat tttaaagtta
      721 aaatgctaag tagttttatg atagccaaaa caaacaatac ttttattcaa actctaaaag
      781 atattttaat gaattattgg aaaaatgagc aatcaagtga aaatcactat tattttatac
      841 tacatatcat atttgaactt ttaaaagagc atggctttgt aaatgatatc tataaaaaca
      901 tgagcgatat agaatgccat ttattacaat ttagtgccaa agaaaaattt aattcaactc
      961 tttgggaaga aattcaaaaa caaagctttt tacacaaact cacgcatttt aaatctataa
     1021 aaaaagattc aatgatagat aaaatcattt tgcaaagttg attttatcta aaataccctt
     1081 tattttttgc caaattttcc aaagatcata aggaattttt gtttggataa aaggtttaat
     1141 tataggtaat ttttccttta aattcaaagg atctttttta aattttttaa tcatcaaagc
     1201 cttttttaca taaaaaggca aaaaagcctc ttttatggct tgagaatttt catttttttg
     1261 atctttaaaa aattctatca actccaaagc tgttatcatc ctacttgctg cttttaaata
     1321 gttttttgcc tctttagcat tttctccaaa aaattcatac aagtctttaa aatactctga
     1381 cacatttgcc tttgtaactt ttttatcatg atttgatata ctatttgccc tcaaacggca
     1441 taagtacaat ctttttggta aaatatagat actatcagca ctcgcaaaca aaaccatgcc
     1501 aaaatgaata tcttcattga tgattttgtt gataaattta agttttaatt gttttaaaaa
     1561 tgaaaaatct atcataccac cccagctaaa cgagatatcc ctcgaaccta cttttatagc
     1621 ttgcttagca tagtctcttg gagtgatagt gcattcttga gtaaaattaa atacattcat
     1681 ccttgttttt tgacccttat cttctatacc atcatcataa atacaagcat ggtcaaacca
     1741 taatacatct acattttgca ttcttacaac acactcttct atgcagttta actcccaata
     1801 attatcagaa tctaaaaaga taatataatc aatctttgaa atttctagct tatcactcgc
     1861 taaagcattt ttgtacttat aaattttata aatattttgt ggattatcgc caataatctt
     1921 aaaaacattt aattcatttt ctttttcaat atattgtgtt tcatattctc cactaaaata
     1981 ttctatacct acatttctag cactacttaa accaccattt tttttatcaa aaagaattat
     2041 tcttttatct tttaaagtat attcttttgc aatattaagt gagttttcat ctgtactacc
     2101 atcatttact agtatgattt ctaaattagt ataagtttga ttgattacac tatctaaaca
     2161 ttcttttaga tatttttcta cattgtatat ggggattact acacctactt ttttcatgtt
     2221 ttatctccaa gttgtttttt cattttttat agtttcaaga taaatttgat gattgatttc
     2281 gagcatattt ttgctatttt cttcatgata gatatgataa gccagagcat taaatttaag
     2341 ccttttaaac actccatcat taaataaaaa tctagctaca aactcactat cttccctacc
     2401 ccagcctata aatttttcat taaatccctc aatggcttca aaatcacttt tataaaaact
     2461 catattgcaa gttttactac ctttaacaag ttgtgatttt ttaaaaaatt tcttagttag
     2521 ttttgaaaat ttatatacac atttagctaa aaaaatactt ctttgatttt taaaaccttt
     2581 tttattaaaa gctaaactat aattattgtt ttttaagatt tcttcgcttt catttttatt
     2641 taaaattact cttgaacctt gtaaaattac tttgcgtttt gcaaattcta aatgattttt
     2701 tacaaagtct ttttctaaaa tcatatcacc atcaattaaa attatatatt cacttttaga
     2761 agctttaata gcattatttc tactttttgc agcacgaaaa ccctcatctt cttgccaaat
     2821 gtgttttaaa gggcaaggaa aatctttttg atattcttca ataagccttg ctgtatcttc
     2881 tttgctacca tcatctgcga ttaaaacttc attgggtaaa aaggctagat ttttaacact
     2941 atcaagcact aatttaaggc gttctttttg attataagtt gttattatta aagcgcaagt
     3001 ttttggcttt tgcttttgaa gttcatataa tttcatgtat ttaaaaaaag tccctaaggc
     3061 attgcaaacg ctaattataa aacccttata accatataaa aagccatttt ttaaaaaata
     3121 atttctaaaa aaagtccaaa aagctcttaa atttgctttt aaaacaccac tttttttgtg
     3181 tatattttgt tttgcccaaa ggcttgagta gtactgcatt ttgtcaatta ggtgggaaat
     3241 atctctaaaa gcataatgcc ttaatccatt tttaagataa atttttttag cattacttgg
     3301 caaaacaagg ctttcatgta ctaaattatc attaaaacga gtgaaatttt tattaaaaat
     3361 tctccaaaca taatcaggcc accaaccaca tgcctttatc cattcgcctt tatagagatt
     3421 tttacgacta agtgcgatga tattatcttc ttgaagttct aaatttttaa gctctttaat
     3481 acactcattt tcaagcactt catcagcatc aatgcttaaa atccaatcat tttttgcata
     3541 acttaaagca aggtttttta aagctccaaa acctataaaa gcactgtggt aaatgtgcaa
     3601 attagcaaaa tcttttttaa attcattagc tatatttagg gtattatcac tactttcatt
     3661 gttaagtaaa ataatttcat caaaatcttt taaagaattt aaacattcaa gcaaggtttg
     3721 ttttgcattt tttacgatga taatagcact tatttgcttt agattcattt tgcatccttg
     3781 taaatttcct tattataact tgcaaagcgt ctatgaaaaa aaaagtattc ccaaggtctt
     3841 tttttaatca tttcttcgca actttgtgct tgataaagtg tcagttcttc taagcttgca
     3901 ttttgagaat cttttacttt aaaaaactct atgcaaaatt taccatcttc tttataggca
     3961 taaacaggga tgatcaaagc attacttctt tgtgcgataa ggcttgctcc catttgataa
     4021 ttcacttctt tgttaaaaaa ttttaatctt acgctttcgt tttctacaca gtcttgatca
     4081 gttaaaattc ccaaagttct cccttttttt agagcgctta gcatttgtct tatgccgcct
     4141 tttttgtcga taagttctat gtcaaattgg gtgcgacttt ggcttaaaat ttcatacata
     4201 atttcacttt ttaacttttt ccctactata gaaatcgcac catatttagc tgcataagca
     4261 aggcttaaaa tttcccagtt tccatagtgt gcagttgtga agataatagg acgatttaaa
     4321 gctagagcat ctataagaaa attttcattg atgaaattta ctttattgag aattttttct
     4381 ttggtggtgt tttgattttg caaacaatca atcccaaatt gagcaaaatt ttcataaatt
     4441 tttaaagaca atttatcgcg ttctttttga gtgtattgag gaaaacagat ttgcaaattt
     4501 gtattgatga ttttgcggtg ttttttgtta agataaaaag cgattcttgc tacaatcaaa
     4561 gctaaaaaat gcaagataca ctcaggcata aaagtaacaa aaaatttcaa aatataataa
     4621 agactaagat atattctatc actatttttc attaagtaag cctttggcaa gtttgaagat
     4681 atcttcttct tctatacgcg tgatacaaaa atcactttta tcgatatgct tggcattttg
     4741 gattttttta cctgcatcaa tgattttatt gatatgagtt tgaaaagcat tgcggtagct
     4801 tggtgttgca ccaaaaatcg taatagatgc cttatttaaa gcaaaagcca aatgtgttgg
     4861 gccgctatca tttcctatga ttaaattcat catttttgta aaagccatta gttcttcaag
     4921 attgaatttt ggcgctaatt ctatatgtgt ttcatcaata ccactaagat ttaaaacctc
     4981 tttagcaaat tcgtattctt ttacatttcc ccaagcgagc caaatttttg tttgttgaaa
     5041 ttcattgatt aaaagcttac aaagtatagc aagtttggtt ttaggataga ttttattttc
     5101 tacacttgag cccacatgta tgagtatgtt tttttcgttt ttgtcgagtt tgagtttatt
     5161 atttaagagt tgttttaaat tttcatctac gctaaaaata tcttgtttaa aggctaaatt
     5221 tttgacatta aaatcagtat ttaacataaa ggaggtaaga cttaagtatc ttacaaatac
     5281 attttcattg taatctaact caagtttttg gttgtagaaa ttatgagcaa aactttcttt
     5341 aagactattt ttatcaaaac caaaattatt tctacttaaa attcgactta caatagcaga
     5401 ttttatgagc ccttgtagat ctattactgc attatagttg ttttttcttg ctttaagaag
     5461 aatttttagg ctttttaaaa tttttttgtc ttttaagggc agggcataga gtttgtttat
     5521 taaaggatgg tttttaagta tgccttcaaa tttttcatct acaaaccaat gaatttctat
     5581 atctttttta aaatttttga taaattgcaa aaccacggca ctttgtataa tatcaccaag
     5641 tgctgacaaa cgaacaattg ctattttcat taaaagccta atattttaaa atttttgcta
     5701 tgattttagc gaaattattt aaaaaaaggt taaaaatggc aaaaaatgaa ggttatattt
     5761 gtgtttttga ttgtgagagt gtgccagatg ttgagcttat ccgcaaaact ttgggttttg
     5821 aaggaagtga tttagaggta agtttaaaag cacttcagtg gcaaaaagaa caaagtggga
     5881 gtgagttttt gcctttgcct tatcataaaa ttatcagtat ttgtgcggtt ttaagtgata
     5941 attttggaaa atttatcaaa gtgaataaaa ttgatggaca aaatgaaaaa gaaatgattg
     6001 agaatttttt caattttata gaaaattatg agccaaaatt agtcagtttt aatggtaaaa
     6061 atttcgatat gcctgttctt gttttaaggg ctttaaaata caatttaaaa gcagcaactt
     6121 atttggatac tcaaagtgat aaatggaata attataaaac aagattttca gaattaaaac
     6181 attgtgattt attagaatcc ttaggatcta acgggcgtgg aataaagctt gatacacttt
     6241 gttctatggt gggtttgcca ggaaaatatg atgtgcatgg cgatgaggta atgaaacttt
     6301 tttatgaaaa taaacttgaa aaaatccacg aatattgtga aagtgatgtt ttaaacacct
     6361 atatgctttt tttaaaatat gaacttatta aagctaatgt tgatgaagaa gattatgttg
     6421 gttttctttc ttatatgaga gatttcttgt gtgcaaaaaa atcagatcgt tcttatacag
     6481 aagtttttgc aaaagcttgt gagagtgaaa tttcaaaagt tcgatcttaa gtatttaaga
     6541 aaatatatta aaatttattt ttgacatttt taaaaaaagg aatgatgatg aaaattctta
     6601 ttagcggtgg tgcaggttat ataggttctc atactttaag acaattttta aaaacagatc
     6661 atgaaatttg tgttttagat aatctttcta agggttctaa aatcgcaata gaagatttgc
     6721 aaaaaacaag agcttttaaa tttttcgaac aagatttaag tgattttcaa ggcgtaaaag
     6781 cattgtttga gagagaaaaa tttgacgcta ttgtgcattt tgcagcaagc attgaagttt
     6841 ttgaaagtat gcaaaatcct ttaaaatatt atatgaacaa cactgttaat acgacaaatc
     6901 tcatcgaaac ttgtttgcaa actggagtga ataaatttat attttcttca acggcggcca
     6961 cttatggcga accacaaact cccgttgtga gcgaaacaag tcctttagca cctattaatc
     7021 cttatgggcg tagtaagctt atgagtgaag aagttttgcg tgatgcaagt atggcaaatc
     7081 ctgaatttaa gcattgtatt ttaagatatt ttaatgttgc aggtgcttgt atggattata
     7141 ctttaggaca acgctatcca aaagcgactt tgcttataaa agttgcagct gaatgtgccg
     7201 caggaaaacg tgataaactt ttcatatttg gcgatgatta tgatacaaaa gatggtactt
     7261 gcataagaga ttttatccat gtagatgata tttcaagtgc acatttagcg gctttggatt
     7321 atttaaaaga gaatgaaagc aatgttttta atgtaggtta tggacatggt tttagcgtaa
     7381 aagaagtgat tgaagcgatg aaaaaagtta gcggagtgga ttttaaagta gaacttgccc
     7441 cacgccgtgc gggtgatcct agtgtattga tttctgatgc aagtaaaatc agaaatctta
     7501 cttcttggca gcctaaatat gatgatttag agcttatttg taaatctgct tttgattggg
     7561 aaaaacagtg ttaaaaaaac ttttttttat tttaagtaag gaagataaaa attttttatt
     7621 tttcttgctt gttttttcag tatttatttc ttttatagaa acttttgcaa tttctttggt
     7681 aatgcctttt atcactttgg ctagtgattt ttcttatttt gatcgtaata aatatttaat
     7741 cagcctaaaa gaatatctta atatccctgt ttttgaaatc attgtttatt ttggagtggg
     7801 gcttattgtt ttttatgtgt ttagagcttt gttaaatgcg tattattttc atcttttggc
     7861 aagattttct aaagggcgtt atcatgcgat cgcttataag gttttttcta aatttttaaa
     7921 tattaattat gaaaaattta ctcaaaaaaa tcaatctgaa attttaaagt ccattacagg
     7981 ggaagtttat aatctaagca ctatgatttc atcattttta cttttgatga gtgaaatttt
     8041 tgtagtactt ttgctttatg ctttaatgct tttgattaat tataaaatca ctttgttttt
     8101 aagtattttt atggtgttaa atgcctttat tttagtgaaa attttaagcc ctatcattaa
     8161 aaaagcagga gtaagacgcg aagaagcgat gaaaaatttc tttgaaattt taaatacaaa
     8221 tttaaataat ttcaaattta ttaagcttaa aaccaaagaa gatggagtat taagtctttt
     8281 taaagcgcaa agtgaagctt tttctaaagc aaatattacc aacgaaagcg tagctgcggt
     8341 gcctagaatt tatcttgaag gaataggctt ttgcgtactt gtttttatcg tggtattttt
     8401 ggttttgaaa aatgaaagtg atatttcagg tattttatcc acgatttcta tttttgtttt
     8461 agcgctttat cgcttaatgc caagtgcaaa tcgtattatt acaagttatc atgatttgct
     8521 ttattatcat tcttctttgg atattattta tcaaaattta agacaagaag aagaaaattt
     8581 gggcgaggaa aaattaagct ttaatcaaga gcttaaaatt tgcaatctta gctttggtta
     8641 tgagggaaaa aaatatttat ttaaaaatct taacttaaat attaaaaaag gcgaaaaaat
     8701 cgcttttata ggggagagtg gttgtggaaa aagtacctta gtagatctta tcataggact
     8761 tttaaaacca aaagaagggc aaattttaat tgatgagcaa gaattaaatg caaataatac
     8821 aaaaaattat cgccaaaaaa taggctatat cccgcaaaat atctatcttt ttaatgacag
     8881 tatagctaaa aatatcactt ttggagatgc ggttgatgaa gaaaaactta atagggttat
     8941 caaacaagca aatttagagc attttataaa aaatttacct caaggagtgc aaacaaaagt
     9001 gggcgatggg gggagtaatt taagcggggg acaaaaacaa cgcatagcta tagcaagagc
     9061 tttatattta gagcctgaaa tgttagtgct tgatgaagca acttctgcgc ttgatactca
     9121 aagtgaagca aaaattatgg atgaaattta taaaatttct aaagataaaa ccatgattat
     9181 tatcgcacat cgcctttcta cgataacaca atgtgataag gtttatcgtt tagaacacgg
     9241 taagcttaaa gaggagaaat gatgaaaata agctttatta tcgcaacttt aaattcagga
     9301 ggtgctgagc gtgctttagt aaccttagct aatgcacttt gcaaagagca tgaagtaagt
     9361 attattaaat ttcatgcagg agaatctttt tataagcttg aaaatgaagt taaagttaca
     9421 agtttggaac aatttagatt tgacacgctt tatcataaaa tcgcaagtcg ttttaagaaa
     9481 ttttttgctt taagaaaggc tttgaaagaa agtaagtctg atgtttttat ttcttttttg
     9541 gatacgacta atattgcttg tattgctgcg aaaatagggc ttaaaactcc actcattata
     9601 agtgagcata gcaatgaagc gtatttaaaa cctaaaattt ggcgtttttt aagaagggta
     9661 agctatcctt tttgtgatgc tttaagtgtg cttggaagca gtgataaggt gtattatgaa
     9721 agatttgtaa aaagggttaa gcttttatta aacccttgtc attttagcga tgaaatttct
     9781 tttgattcta gttttgaaaa ggaaaatttg gttcttttta tagggcgttt agatcacaac
     9841 aaaaaccctg taatgttttt aaaagctata gcgcatttgg ataaaaattt acaagaaaat
     9901 tataaatttg ttatagcagg agatggacag ttaagacaag aacttgaata taaggtaaaa
     9961 tctttaggaa taaaagttga ttttttagga cgcgttgaaa atgtcaaggc tctttatgaa
    10021 aaagcaaaag tgctttgcct ttgttctttt gtagagggtt tgccaacggt tttaattgaa
    10081 agtttgtatt ttgaggtttg tagaatttca agttcttatt ataatggtgc taaggattta
    10141 atcaaagata atcatgatgg gcttttggta ggttgtgatg atgaaatagc acttgctaaa
    10201 aaacttgaac ttgttttaaa tgatgaaaat tttagaaaag aacttgtaaa taatgccaaa
    10261 caaaggtgta aagactttga aatttctcat atcaaagaag aatggcttaa gcttatagcc
    10321 gaggttaaaa atgcctaaac tttctgttat agtaccaact tttaatcgtc aagttttgtt
    10381 agaaaaggct attaaaagca tacaaaatca agattttaaa gatttagaaa ttattgtaag
    10441 cgatgataat tctagcgatg atactaaaag tgtggtgcaa aatttacaaa aagatgatga
    10501 tcgcattaag tattttttaa atcaaaatta caaacaaggt ccaaatggca ataaaaacaa
    10561 tggcttagat caagcaagtg gcgagtttgt aactttttta gatgatgatg atgagctttt
    10621 atccggggct ttaagtacct tgatgcaaaa agcaaatgag ggttatgctc atgtttttgg
    10681 aaattgtttg atagaaaaag aaggaaattt aagcaaggaa tttagcggca agggcttgga
    10741 aaaagatagt gaaatttcta aaaaagattt tttaatggct aaatttagcg gagagttttt
    10801 ttctgttttt aaaaaatccc tacttgaaaa taagcgtttt aatgaagaat tttatggcaa
    10861 tgaagccacg ctttgggtaa atttatacaa agaaaaaagt ttttatatcc ataaggcttt
    10921 taggatttat agaattttta ggcaagatag cgtgacttta ggggcgagta aaaatgctta
    10981 tagggtgtat ttgggatatt tagagcttgc taaaatttta gaaaatgaac ttagaatgag
    11041 taaggataaa gattataaaa aaacttgtgc gagttattat aaaatggcag cttattatgc
    11101 aaaacttgca aaaaattata aagcccttta taaatgtttg tttaaaagcc taagtataaa
    11161 aatcaacgct cctgctttga tattactcat tttaagtata attccaaata atatgattga
    11221 aaaattatca aaaattcggg tggctttatg caaaaattag gcatttttat ttattcttta
    11281 ggaagtggtg gtgctgaaag agttgtggcg actttattgc ctattttaag tttgaaattt
    11341 gaagtgcatt tgatcttgat gaatgataaa atttcttatg aaattccaga gtgtcaaatt
    11401 cattttttag aatgttcaaa acctagtgaa aatcctattt tgaaattttt aaaactacct
    11461 tttttggctt taaaatacaa aaaactttgc agaaatttag gtattgatac agaatttgtt
    11521 tttttaaatc gacctaatta tatagcttta atggcaagaa tgtttggaaa caaaactcgc
    11581 cttgtgatca atgaatgcac tacgccaagt gtgatgtata tgaaaaataa ttttaattct
    11641 ttggtaaata aatttttaat ttctttgctt tacccaaaag ctgatttaat cttgcctaat
    11701 tctaagggaa atttagaaga tttagtgcaa aattttagta taagtccaaa aaaatgtgaa
    11761 attttataca atgccatcga tttagaaaac atagggcaaa aagcccttga agacatagct
    11821 ttaaaagata aatttatttt aagtgtaggc aggcttgata aaggtaaaaa tcatgcttta
    11881 ttaattcgtg cttatgcgag attgaaaaca gatttaaagc ttgtgatttt aggtgaaggt
    11941 gtgcttaagg atgagctttt agctttgatt aaagaattaa atttggaaga aaaggttttg
    12001 cttttaggat ttgataataa tccttataaa tacatggcta aatgcgaatt ttttgctttt
    12061 gcttctgtgt ttgaaggttt ttcaaatgtt ttaatcgaaa gtttggcttg ttcttgtgcg
    12121 gtggtttgca ctgatcataa aagtggtgca agagagcttt ttggcgatga tgaatttgga
    12181 cttttagtag aagtagataa tgaaaactct atgtttcagg gtttaaaaac tatgcttgaa
    12241 gacgataaat taagaaaagc gtataaaaac aaagctaaaa ctagggctaa agcctttgat
    12301 aaagtaaaaa ttgcacgcga tgctttgaaa tatttattag gataaaagat gttgaaaaaa
    12361 gagtatttaa aaaaccctta tttagttttg tttgcgatga ttgtattagc ttatgttttt
    12421 agtgtatttt gcaggtttta ttgggtttgg tgggcaagtg agtttaacga gtattttttc
    12481 aataatcaat taatgatcat ttcaaacgat ggctatgctt ttgctgaggg cgcaagagat
    12541 atgatagcag gttttcatca gcctaatgat ttgagttatt atggatcttc tttatctacg
    12601 cttacttatt ggctttataa aatcacacct ttttcttttg aaagtatcat tttatatatg
    12661 agtacttttt tatcttcttt ggtggtgatt cctattattt tactagctaa tgaatacaaa
    12721 cgccctttaa tgggctttgt agctgctctt ttagcaagtg tagcaaacag ttattataat
    12781 cgcactatga gtgggtatta tgatacggat atgctggtaa ttgttttacc tatgtttatt
    12841 ttatttttta tggtaagaat gattttaaaa aaagactttt tttcattgat tgccttgcca
    12901 ttatttatag gaatttatct ttggtggtat ccttcaagtt atactttaaa tgtagcttta
    12961 attggacttt ttttaattta tacacttatt tttcatagaa aagaaaagat tttttatata
    13021 gctgtgattt tgtcttctct tactctttca aatatagcat ggttttatca aagtgccatt
    13081 atagtaatac tttttgcttt atttgcttta gagcaaaaac gcttaaattt tatgattata
    13141 ggaattttag gtagtgcaac tttgatattt ttgattttaa gtggtggggt tgatcccata
    13201 ctttatcagc ttaaatttta tatttttaga agcgatgaaa gtgcgaattt aacacagggc
    13261 tttatgtatt ttaatgttaa tcaaaccata caagaagttg aaaatgtaga ttttagcgaa
    13321 tttatgcgaa gaattagtgg tagtgaaatt gttttcttgt tttctttgtt tggttttgta
    13381 tggcttttga gaaaacataa aagtatgatt atggctttac ctatattggt gcttgggttt
    13441 ttagccttaa aaggaggact tagatttacc atttattctg tacctgtaat ggctttagga
    13501 tttggttttt tattgagcga gtttaaggct atattggtta aaaaatatag ccaattaact
    13561 tcaaatgttt gtattgtttt tgcaactatt ttgactttgg ctccagtatt tatccatatt
    13621 tacaactata aagcgccaac agttttttct caaaatgaag catcattatt aaatcaatta
    13681 aaaaatatag ccaatagaga agattatgtg gtaacttggt gggattatgg ttatcctgtg
    13741 cgttattata gcgatgtgaa aactttagta gatggtggaa agcatttagg taaggataat
    13801 tttttccctt ctttttcttt aagtaaagat gaacaagctg cagctaatat ggcaagactt
    13861 agtgtagaat atacagaaaa aagcttttat gctccgcaaa atgatatttt aaaatcagac
    13921 attttacaag ccatgatgaa agattataat caaagcaatg tggatttatt tctagcttca
    13981 ttatcaaaac ctgattttaa aatcgataca ccaaaaactc gtgatattta tctttatatg
    14041 cccgctagaa tgtctttgat tttttctacg gtggctagtt tttcttttat taatttagat
    14101 acaggagttt tggataaacc ttttaccttt agcacagctt atccacttga tgttaaaaat
    14161 ggagaaattt atcttagcaa cggagtggtt ttaagcgatg attttagaag ttttaaaata
    14221 ggtgataatg tggtttctgt aaatagtatc gtagagatta attctattaa acaaggtgaa
    14281 tacaaaatca ctccaatcga tgataaggct cagttttata ttttttattt aaaggatagt
    14341 gctattcctt acgcacaatt tattttaatg gataaaacca tgtttaatag tgcttatgtg
    14401 caaatgtttt ttttgggaaa ttatgataag aatttatttg acttggtgat taattctaga
    14461 gatgctaaag tttttaaact taaaatttaa gggttgaaaa tgagaatagg atttttatca
    14521 catgcaggag cgagtattta tcattttaga atgcctatta taaaagcgtt aaaagataga
    14581 aaagacgaag tttttgttat agtgccgcaa gatgaataca cgcaaaaact tagagatctt
    14641 ggcttaaaag taattgttta tgagttttca agagctagtt taaatccttt tgtggtttta
    14701 aagaattttt tttatcttgc taaggttttg aaaaatttaa atcttgattt tattcaaagt
    14761 gcggcacaca aaagcaatac ttttggaatt ttagcagcaa aatgggcaaa aattccttat
    14821 cgttttgcct tagtagaagg cttgggatct ttttatatag atcaaggttt taaggcaaat
    14881 ttagtgcgtt ttgttattaa tagtctttat aaattaagtt ttaaatttgc acaccaattt
    14941 atttttgtca atgaaagtaa tgctgagttt atgcggaatt taggacttaa agaaaataaa
    15001 atttgcgtga taaaatctgt agggatcaat ttaaaaaaat tttttcctat ttatgtagaa
    15061 tcggaaaaaa aagagctttt ttggaaaaat ttaaacatag ataaaaaacc cattgtgctt
    15121 atgatagcaa gagctttatg gcataagggt gtaaaagaat tttatgaaag tgctactatg
    15181 ctaaaagaca aagcaaattt tgttttagtt ggtggaagag atgaaaatcc ttcttgtgca
    15241 agtttggagt ttttaaactc tggcgcggtg cattatttgg gtgctagaag tgatatagtc
    15301 gagcttttgc aaaattgtga tatttttgtt ttgccaagct ataaagaagg ctttcctgta
    15361 agtgttttgg aggcaaaagc ttgcggtaag gctatagtgg tgagtgattg tgaaggttgt
    15421 gtggaggcta tttctaatgc ttatgatgga ctttgggcaa aaacaaaaaa tgctaaagat
    15481 ttaagcgaaa aaatttcact tttattagaa gatgaaaaat taagattaaa tttagctaaa
    15541 aatgccgccc aagatgcttt acaatacgat gaaaatataa tcgcacagcg ttatttaaaa
    15601 ctttatgata gggtaattaa gaatgtatga aaaagttttt aaaagaattt ttgattttat
    15661 tttatcttta gtgcttttag tgcttttttc tccggtgatt ttaatcactg ctttactttt
    15721 aaaaatcact caaggaagtg tgatttttac ccaaaatcgt cccgggttag atgaaaaaat
    15781 ttttaaaatt tataaattta aaaccatgag cgatgaaaga gatgaaaagg gtgagttatt
    15841 aagcgatgaa ttgcgtttga aagcttttgg aaaaatcgtt agaagcttaa gtttggatga
    15901 gcttttgcaa ctttttaatg ttttaaaagg ggatatgagt tttgttggac ctagacctct
    15961 tttggttgag tatttgcctc tttacaataa agagcaaaaa ttgcgtcata aagtgcgtcc
    16021 aggtataaca ggatgggcgc aggtaaatgg tagaaatgct atttcttggc agaaaaaatt
    16081 cgaacttgat gtgtattatg tgaaaaatat ttcttttttg cttgatttaa aaatcatgtt
    16141 tttaacagct ttaaaggttt taaaacgaag tggggtaagc aaagaaggcc atgttacaac
    16201 agagaaattt aatggcaaga actgaaaaaa tttatattta tggtgctagt ggtcatgggc
    16261 ttgtttgtga agatgtggct aaaaatatgg gttataaaga atgtattttt ttagatgatt
    16321 ttaaaggaat gaaatttgaa agtaccttac ctaaatatga tttttttata gccataggaa
    16381 acaatgaaat tcgaaaaaag atttatcaaa aaatttcaga aaatggcttt aaaattgtca
    16441 atcttatcca taaaagcgcg cttataagtc ctagcgcaat cgtggaagaa aatgcaggaa
    16501 ttttaatcat gccttatgta gtgattaacg ctaaagctaa aatagaaaaa ggtgtgattt
    16561 taaatacttc aagcgtaatt gagcatgaat gtgtgatagg ggaattttct catgtgagtg
    16621 tgggagctaa atgtgcgggt aatgtaaaaa ttggtaaaaa ttgtttttta gggattaatt
    16681 cttgtgtttt gcctaattta agtttggcag atgatagtat tttaggtggt ggagcaactt
    16741 tagttaaaaa tcaagatgaa aaaggtgttt ttgtgggagt acctgcaaaa aggatgtaaa
    16801 ttgcatttta ataacaatct tgttgttcac tatatagtaa atccttcgcc tttggggtgg
    16861 attgtcatta atttactaac catatgtcta atatgctaca tatttccttt gaaaaattct
    16921 ttaaaacaca aaaaactttt tagtcttaaa gcaaatgtaa attctaaaaa tagtaggatt
    16981 ataaaatata caggtattgc tgcttttttg ggtggattaa taggaatttg gtataatttt
    17041 gaaggttttt atcaacttct ttttttcttt gaattagaaa atgaaaattt aaaaacactt
    17101 tggagtttgc aagtat
//
LOCUS       DAPIWQ010000019        17102 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.019, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000019 DAPIWQ010000000
VERSION     DAPIWQ010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17102)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17102)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17102
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.019"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            49..1248
                     /locus_tag="RJ267_000467"
     CDS             49..1248
                     /locus_tag="RJ267_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7388350.1"
                     /translation="MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAG
                     YLTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGIFALANFIIFFSQNFYLTAFARF
                     IAGTQHGVFFVIATLAVSAITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
                     FIFLLIFIITSLAFFGVWHMMPKNLHPSPTNLKNLIPAFSHQNLLKTYTITICSCGAQ
                     FVLYTYLQKILVEISGFKVQDTAYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILS
                     IQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSITKAKRHTYKVIDSTVS
                     VNEAAFNVGIALASFLGGIVLARLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQ
                     RKSFTKV"
     gene            1304..1624
                     /gene="ciaC"
                     /locus_tag="RJ267_000468"
     CDS             1304..1624
                     /gene="ciaC"
                     /locus_tag="RJ267_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion antigen CiaC"
                     /protein_id="HDV7388351.1"
                     /translation="MVVDNTQKTSNAIFSTTTKVKEKNTSADEFQATLNEVKNKEEKE
                     DKKTNSSKFTNEDIDLGAVREDFRSYAWQKMREDQYKKNEETLLNKLFTTIDAGNATN
                     NTKA"
     gene            1808..2830
                     /locus_tag="RJ267_000469"
     CDS             1808..2830
                     /locus_tag="RJ267_000469"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HDV7388352.1"
                     /translation="MIFIDACFKKPTPYTPIWMMRQAGRYLPEYMEVRKQAGDFLSLC
                     KDYKKASEVSLQPIDILDVDAAIIFSDILVVPLEMGMNLRFEKGEGPVFGNPISTLED
                     LEKLDDQNAHKKLNYVYDALKLTREKLSQNKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHKILNKLTQVLKLYLEEQIKAGANAIQIFDSWASALEYDKFFEFSF
                     NYMLEISNFIKSKYPNIPVILFPKGISGYLDRIDGNFDVFGVDWSTPLDLARDKLSHK
                     YTLQGNMEPCRLYDKNAIKEGVEKILKTMQNKAHIFNLGHGILPDIPVENAKYFIKLV
                     QESSAK"
     gene            2827..3729
                     /locus_tag="RJ267_000470"
     CDS             2827..3729
                     /locus_tag="RJ267_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HDV7388353.1"
                     /translation="MKILFGPVSSRRFGRSLGIDLSPSKKQCNFDCVYCELDPKKAQE
                     KQDEIISIDKIISEVKAMLEKNVEFDFLTLTANGEPSLYPYLNELILSLRSIAKDKKL
                     LILSNGTAVLDEDKFNALLKLDVVKFSLDSAVAKTFYRIDRALKNIDLEKMIEKMADF
                     RARFNGDLIMEILVVKDLNDNEEEFEALNQALKKIMPLRVDLSTIDRPPAYAVKKVSE
                     EKLLELSKLIDSTPVLLAKRHYEGEKLSFNEEELLKMLHLRSQSEIDIEVKFDEQSKT
                     LLNQLIKEKKVKILDLAGVKFYKV"
     gene            complement(3726..4922)
                     /locus_tag="RJ267_000471"
     CDS             complement(3726..4922)
                     /locus_tag="RJ267_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388354.1"
                     /translation="MILAGIIFIFNLILAYLSIDISKLDSVTEQLKIGMFSSIFVLSL
                     TLFIFAFRQNRNINKIYQKIFCMQNDFLNFQKKIDVDSALDLLKEKFETTSQNLTKIS
                     HEKDRYLHLLEENLYQLINISNAMRCLNEGYNKEINSLILNALNSQKDQIRLELNEAL
                     EHHKSIIGTSHGKVLQFEASVAIVNNDELENFLLANLLSYFGIESTCFKNLSFDVNDF
                     HLIFIKDKIFNKNVKKNYDFIVMGRHKNTHYEYFLTLPFEKKDLENILQNKLDKVCTL
                     KFKTPYQNNVLLFKQNDFDATLFFNIIEKQCDKNICINSFSQLKQELSKETYRLILLD
                     YELIKFDLEQMRNLLSAYKKQHPQSHIIFFSKEKVRDFDCVSEVLSDVSRNDLITLLR
                     KYLPKA"
     gene            complement(4924..6726)
                     /gene="uvrC"
                     /locus_tag="RJ267_000472"
     CDS             complement(4924..6726)
                     /gene="uvrC"
                     /locus_tag="RJ267_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HDV7388355.1"
                     /translation="MTKENLENELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVRS
                     YFAFTPNLHANPRNSLRIQKMIEETVHLEFIATNSEADALILENSFIKQLHPKYNILL
                     RDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
                     ASCKSPCIFYQISRCLAPCDKLISREKYLEILDEAIHALLNPSVLLKNLEKQMLVLAQ
                     NENYEEAAKVRDQIAMIKDLEVKVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKI
                     ISANSKITPIKNDIQWDQNEIYKQLILENFSMDIPLLANVIYVYEEFEDRVLLEEILS
                     QRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKSYFELENLPN
                     DIEIFDNSHLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFD
                     KIPPPDLWLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHS
                     LKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANLGLSSGVMQK
                     LLAYYGNFESIYKADFKDLTMLVGRKAAQKIKEN"
     gene            complement(6719..7213)
                     /locus_tag="RJ267_000473"
     CDS             complement(6719..7213)
                     /locus_tag="RJ267_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388356.1"
                     /translation="MGKRNNIKMTKNASAVINELMDKPHYKPLKTLFFCKDFLSSFPL
                     AKQRLIAKIYVKNHILNIITLHPAAYQELNHDDSKIYIKFLIKAYGQKYPLSGFVDIK
                     DIKIFSQKYTYAANKNKNDEKLSKNSYLELSKGEFKNCFKDKKLFKKFEDLRELIKKG
                     SNLD"
     gene            7352..8887
                     /gene="guaA"
                     /locus_tag="RJ267_000474"
     CDS             7352..8887
                     /gene="guaA"
                     /locus_tag="RJ267_000474"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HDV7388357.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKGIFDLNLPVLGICYGMQLMAHHYKATVAPAGHK
                     EYGKANIEIKKDNALFKNLPKKQTVWMSHSDKVENLPQGFEVLATSENSPFCVFGNED
                     KKFFALQFHPEVQHSEFGKNILKNFAKYACNCESIWNMGSFAKTQAEKIREEVGNDKV
                     LCAVSGGVDSSVVAALLASAIKEQIIVVFVDNGLLRSGEKEQVEFMFKNTLGIDLISI
                     DASEIFLSRLVNVTDPEQKRKIIGNTFIEVFEEEAKKHKDVKYLAQGTLYTDIIESSV
                     VGASKTIKSHHNVGGLPEKMNLKLIEPLKEIFKDEVRALGLELGLSKEVVYRHPFPGP
                     GLAIRIMGEVNRASLELLRKADVILLEELKSTGWYDKTWQAFCVLLNVKSVGVMGDNR
                     TYDNAVCIRVVDASDGMTATFSHLPYEILENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
     gene            8973..10433
                     /locus_tag="RJ267_000475"
     CDS             8973..10433
                     /locus_tag="RJ267_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388358.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFNRQIWNDKKSMPSVGML
                     VEFRTLSSEKKAEDGKLVQTSKTITGIKPSKFQEFKEGDFITEHDFWKTDNDDELEDL
                     QNSRRSAYITELYRTTDFDTIEKIPLSFTIPQAIQKYFAHEILSVETLQANLQDEKEI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMMADQKPNIT
                     KIFNETFLSLQCHYQALVATIDTRKNRLASLEAQMKTLQSEINLKSNATDADPEKLKA
                     RQERLAKLQKEAEYYRTTLKRLDAIREDFYKKNYNIFENAFKLSREKLFKKIVTGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIENFSQNPYYLVKYAPKKVNYQSLMRDNT
                     FDIVYIDEKHVWENVADIILQGKHFDKSGKTKFKLI"
     gene            10673..11923
                     /gene="purD"
                     /locus_tag="RJ267_000476"
     CDS             10673..11923
                     /gene="purD"
                     /locus_tag="RJ267_000476"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HDV7388359.1"
                     /translation="MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGTNL
                     NLKDPVVLATYAKEKGFDLCIVGSESFLAEGVVDIFKQQGLAIFGPSKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IEETAKMLSGESFGDAGKLVVIEEFLDGYELSIFAVCDGNDFVLLPAAQDHKKLLDND
                     QGPNTGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKKEGAEFCGVLFIGAMIVGNK
                     PYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRRLRHSKIKIKKEFAVGVVCASEN
                     YPYKSSPKSEITVNNIPENSHISYAGVSLEDGKLMADGGRVLVCVGTGKSIEEAQKNA
                     YKLCDNVNFKGKQYRKDIAHQVLK"
     gene            11920..12372
                     /locus_tag="RJ267_000477"
     CDS             11920..12372
                     /locus_tag="RJ267_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HDV7388360.1"
                     /translation="MKENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDR
                     LIQAKDLFETTQIIGNFYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKP
                     NLIQSCIRSAIRQVSAMAFMLGFAWALSNDLRKAWEDYLARTIVVDVA"
     gene            12362..14410
                     /locus_tag="RJ267_000478"
     CDS             12362..14410
                     /locus_tag="RJ267_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HDV7388361.1"
                     /translation="MWRKFSLLLGTSIALNAAQVDIYALDAKKEGDILTANNDVVIFS
                     DFYFITANKAIYNEKTEDVELFGDVNILRGQNERSHSDYAKINLNSNQVDFSNFFFSN
                     NNLEVWFQSKTSHLNDKVFESKISAVSSCNVEDPDWEIRFSKGWLNRETNFVHLYNAR
                     LYVKNTPVFYLPYFGFSADTHRQSGLLIPKIVLKSSEGLYYEQPIYIATQENWDLELD
                     PQIRTNRGFGLYSTLRFLDSPYSTGELNFGAFRENSSYFHDENLKNQTHYGIELKYSR
                     DDLIKSLLSDNFQEGLWIDATYLNDVDYLNLGSRDYRDLNSLVTSKINYFLADENNFY
                     GAYARYYIDTSKLSNNTTLQEYPSFQYHRFLNNLFDERLRYSFDASFHNFYRPAGSYA
                     NELNLDLPISYHNAFFGDFLHFTFTERFYASFVNYSNDPERNHEHYFRNTHDFNLYTD
                     LSKAYENFFHTLNLGVNYILPGAKSGKITQDYLEEYDKENEHTSLYTVQYFYNNEGQK
                     KLKHRISLDYLNKQNEFYELENLLTYYFNENINLNSEVLYSYEQSRFTNVISQIEVNT
                     NSKFNWMFSHAYQNDEYGKYSFIGTRANYIATPNYNLFGGIWFDTQRAHANMWELGYT
                     YQRKCWNYSLMYRERIDPQLTSGGITAKNQSGVYFIFNFYPLGGVKYDFSLAESENKI
                     "
     gene            14480..16639
                     /locus_tag="RJ267_000479"
     CDS             14480..16639
                     /locus_tag="RJ267_000479"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HDV7388362.1"
                     /translation="MQYSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSVVLATVAREE
                     KQVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     AYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNP
                     NNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNEL
                     SEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQ
                     IKEAINQMAKSERASELNKIAKEILNLEIAKDWSEESVLNTLAKVKRKLIREQILNEG
                     KRADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDSQMIDLLTEK
                     NPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLVS
                     EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMGLEDH
                     DGDMDFKVAGSKDGVTALQMDIKLGGIDQEILKQALYQAKEGRIHILNIMEEAAKEII
                     VNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIVEKFGVSIDLDREKGEVKIAGSQNE
                     QIKAAKDYIINITSSQKGTKKGPKDKDISGFELGQEFQGIVKKIAPFGAFVELKNGVD
                     GLLHSSKIKHLNLSENQSLKVKISEIKNGKISVDLCE"
     gene            16636..>17102
                     /locus_tag="RJ267_000480"
     CDS             16636..>17102
                     /locus_tag="RJ267_000480"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HDV7388363.1"
                     /translation="MSEFLTHPFEPFFDKDSKILILGSFPSIKSRQDGFYYQHPRNRF
                     WPILETLFNAKLENITEQQAFLRKKHIALWDVLQSCKIKNSDDKTISYAKANDLNLIL
                     SQTKIQAIFTTGQSAYRFFVKFHPRLEAIALPSTSPANLNFSFEQLLQNYEII"
BASE COUNT         6166 a         2647 c         2712 g         5577 t
ORIGIN      
        1 gcctttattt tattataatg cgtttttatt ttttataagg aacttaaaat gcaaaattac
       61 aaaaaagctc tttttgcact agctcttagt gctttttgta tgggcgtaac tgaatttgtt
      121 atggcaggag ttttggttga tgttgaagcg tattttagcg tagatgcaaa aaccgcgggc
      181 tatcttacaa ccttatatgc tataggtgtt gttataggtg ctcctcttat caccatacct
      241 ttaagtcgtt ttcatagaca tacacaactt ttaatcaatc ttggaatttt tgctttagca
      301 aatttcatca tcttttttag ccaaaatttc tatcttactg cttttgcacg ctttatagca
      361 ggaacacaac atggggtatt ttttgtcatt gccaccttag ctgtaagtgc tataactcca
      421 gatgataaaa aatcaagtgc tctagctata atggtcacag ggcttactgt agccttagtt
      481 actggagtgc cgcttggaac ttttataggg cattattttg gctttaaatt tatcttttta
      541 ctcattttta tcattacaag tctagcattt tttggagtat ggcatatgat gcccaaaaat
      601 ttacatccta gcccaaccaa tcttaaaaat ctaatccctg ctttttctca tcaaaatttg
      661 ttaaaaactt atactataac catttgtagt tgtggggctc aatttgttct ttatacttat
      721 ttgcaaaaaa tacttgtaga aataagcggt tttaaagtcc aagatacagc ttatatcttg
      781 cttttatatg gaatttgtgc aatttgtggg aatttatggg gcggaaaaat agtagataaa
      841 aaaggtgcta ttttttcttt gcgtcttatt ttaagcatac aagttctagt atttttaagt
      901 gtatttctca ccatgcattc taaaatttta atcattttta gcgtagcttt gataggattt
      961 tttgcctttt caaccatacc tgcactaaaa atgcttagca ttactaaagc taaacgccat
     1021 acttataaag tcatagacag tacagtaagt gtgaatgaag cagcttttaa tgtaggcata
     1081 gctttagcaa gttttttagg tgggattgtt ttagcaagat tgggtataga atttaatgct
     1141 ttattttcag cactttttgt aagccctgct ttgatttttg ccttgctttt tgccaaagat
     1201 aaattaaatt ataaaaaatt tcaaagaaaa agttttacaa aggtataaat tggaatagaa
     1261 attgcttgct tatttaatgt aaagttaaat aaaggaggag aaaatggtag tagataatac
     1321 tcaaaaaaca tcaaatgcta tctttagcac cacaactaaa gttaaagaaa aaaatacttc
     1381 ggcagatgaa tttcaagcca cattaaatga agtaaaaaac aaagaagaaa aggaagataa
     1441 aaaaacaaac tcaagcaaat ttactaacga agacattgat cttggtgctg ttagagaaga
     1501 ttttagatct tatgcttggc aaaaaatgag agaagatcaa tacaaaaaaa atgaggagac
     1561 tttgctaaat aagcttttta ctacaattga cgcaggaaat gccacaaaca atacaaaggc
     1621 ttaatataca aatcaatcaa aactcaaact acataaacga gaattccaat aattctcgta
     1681 aaatttctaa taactctgga taaaatgaaa aaatttatta tttcctctat atgaagaaaa
     1741 tatagaaaaa ttgaccaatt taatttatca aattctgtta taattttgct aaaaacaaag
     1801 gaaaataatg atttttatcg atgcttgctt taaaaaacct acaccctaca cccctatttg
     1861 gatgatgcgt caagcaggaa ggtatttgcc agaatatatg gaagtaagaa aacaagcggg
     1921 tgattttctc tctttatgca aagactataa aaaagcttct gaagtttctt tacagcctat
     1981 tgatatttta gatgtagatg cagcaatcat tttttcagat atcttagttg ttcctcttga
     2041 aatgggtatg aatttacgtt ttgaaaaagg agaagggcct gtttttggta atcctatttc
     2101 aaccctagaa gatttagaaa aacttgacga tcaaaatgca cataaaaaat taaattatgt
     2161 ctatgatgcc ttaaagctta caagagaaaa attatctcaa aacaaggctt taataggatt
     2221 ttgcggaagc ccttggacta tagctaccta tatgatagaa ggaagtggaa gtaaaaatta
     2281 tgcaaagtgt aaaaaaatgc tttatcaaaa cccagaactt ttacataaaa ttctaaacaa
     2341 actaactcaa gttttaaaac tttatttaga agagcaaatt aaagcaggtg ctaatgctat
     2401 acaaattttt gatagctggg caagtgcttt agaatatgat aagttttttg aattctcttt
     2461 taattatatg cttgaaattt caaattttat taaaagcaaa tacccaaata tacctgtaat
     2521 tttattccct aaaggcatta gcggttattt ggatagaatc gatggcaatt ttgatgtttt
     2581 tggggttgat tggagcaccc cgcttgattt agcacgtgat aaactatcac acaaatacac
     2641 tcttcaaggc aacatggagc cttgcagact ttatgataaa aatgccatca aagaaggagt
     2701 ggaaaaaata ctaaaaacca tgcaaaataa agctcatatt ttcaacttag gacatgggat
     2761 cttgcctgat attcctgttg aaaatgcaaa atattttatc aagcttgtac aagaaagttc
     2821 agctaaatga aaatactctt tggtcctgtt agctctaggc gttttggaag atctttgggt
     2881 atagatttaa gccctagtaa aaaacaatgc aattttgatt gtgtttactg cgagcttgat
     2941 ccaaaaaaag cccaagaaaa acaagatgaa attatcagca tagataaaat tatctctgaa
     3001 gttaaagcta tgcttgaaaa aaatgttgaa tttgattttc ttacccttac tgccaacgga
     3061 gagcctagtc tttatcctta tttaaatgag cttattttat ctttacgcag cattgctaaa
     3121 gataaaaaat tgcttatttt aagcaatggt acagctgtat tagatgaaga caaatttaat
     3181 gctttgctaa aactagatgt ggtcaaattt agcctagata gtgcagttgc taaaactttt
     3241 tatcgtattg atagagcttt aaaaaacatt gacttagaaa aaatgataga aaaaatggca
     3301 gattttagag ctaggtttaa tggagatttg attatggaaa ttctagttgt taaagatctt
     3361 aatgacaacg aagaagaatt tgaagcactt aatcaagctt taaaaaaaat catgccttta
     3421 agggttgatc taagcaccat agatagacct cctgcttatg ctgttaaaaa agtaagcgaa
     3481 gaaaaacttt tagaactttc taaacttata gattctactc ctgtactctt agccaaaaga
     3541 cattatgaag gtgaaaaact aagcttcaat gaagaagaat tattaaaaat gcttcatttg
     3601 cgctcacaaa gcgaaataga cattgaagtg aaatttgatg aacaatccaa aactctctta
     3661 aatcaactta tcaaagaaaa aaaggtaaaa attctcgatt tagctggagt taaattttat
     3721 aaagtttagg cctttggcaa atactttcta agtaaagtta taagatcatt tctacttaca
     3781 tcacttaaaa cttcgctcac acaatcaaaa tccctaactt tttcctttga aaaaaagatg
     3841 atatggcttt gtggatgctg ttttttataa gcacttagca aatttctcat ttgctcaaga
     3901 tcaaatttaa ttaattcata atcaagtaaa atcaaacgat aagtctcctt gcttaattct
     3961 tgttttaatt gactaaaaga atttatacat atatttttat cacattgttt ttctattata
     4021 ttaaaaaaca aggttgcatc aaaatcattt tgtttaaaaa gcaatacatt attttgataa
     4081 ggggttttaa attttaaagt gcaaacctta tcaagcttgt tttgcaaaat attttcaaga
     4141 tctttttttt caaaaggtaa agttaaaaaa tactcataat gtgtattttt atgccgaccc
     4201 atcactataa aatcataatt tttctttaca tttttattga aaattttatc cttgataaaa
     4261 atcaaatgaa agtcattaac atcaaaactt aaatttttaa aacaagtgct ttctatgcca
     4321 aaatacgaaa gtaaatttgc aagtaaaaaa ttctcaagct catcattatt aactatggcc
     4381 acacttgctt caaattgcaa aacctttcca tgagatgttc ctataatgct tttatgatgc
     4441 tctaaagcct catttaattc taatctaatt tgatcttttt gagaatttaa ggcatttaaa
     4501 atcaaagaat taatttcttt attataccct tcatttaagc aacgcattgc attagatata
     4561 tttataagct gatataaatt ttcttccaat aaatgcaaat atctatcttt ttcatgggat
     4621 attttagtta aattttggct cgtagtttca aatttttcct ttaacaaatc aagcgcacta
     4681 tcaacatcaa tctttttttg aaaatttaaa aaatcatttt gcatgcaaaa aattttttga
     4741 tatattttgt ttatatttct attttgccta aaagcaaaaa taaaaagtgt taaagataaa
     4801 acaaaaatgc tagaaaacat acctattttc agttgttcag taacactatc aagctttgag
     4861 atatcaatac ttaaatacgc taaaattaga ttaaaaataa aaattatccc tgctaatatc
     4921 aaatcaattt tcctttatct tttgcgccgc tttcctgcct acaagcattg taagatcttt
     4981 aaaatcagcc ttatatatag attcaaaatt tccataatac gctaaaagtt tttgcataac
     5041 ccctgaacta agtcctaaat ttgcaagctt agaacttttc aagtcctgtt ttttcttagt
     5101 attttgatga aagctaatag caaaacggtg tgcttcatct cttaatttct gtaagaattg
     5161 tagtttttta tcgttaatgc ttagactaaa ttctcctttt aaggaatgaa ttttatcctt
     5221 agcaccccct ttagctctat gtgcttttgc atcgattttt tcttttgaaa tagctaaaat
     5281 atcgacattt gccccactac ttacaatgat ttctttagcc aaatcaagca aagcctttcc
     5341 cccatctata agccataaat caggaggagg tattttatca aagtccaaag ccctacgcgt
     5401 taaaacttca cgcatttgat catagtcatt tttatgtttt aaatgaaatt tacgatattt
     5461 tgacttatcc caagaattta ttctataagt taccatagct ccaacatttg ccacgccttg
     5521 caaatgagaa ttatcaaaaa tttctatatc atttggtaaa ttttcaagct caaaataaga
     5581 ctttaattct ttttgtatag taaaatcatg atttttttgc tctttttcta tatttaaaag
     5641 ggcattttga aaagccaaat cacaaattct tcttttttct cctattttag ggattttaat
     5701 actgattttt ttatcaaacc tttggcttaa aatttcttct aaaagcactc tatcttcaaa
     5761 ttcttcataa acataaataa catttgcaag caaaggaata tccatgctaa aattttctaa
     5821 aatcagttgc ttataaattt cattttgatc ccattgtata tcatttttta taggagtaat
     5881 cttagaattt gcactgataa tttttccatt ttgcaccaca aaacgcaagg ttgaaagcac
     5941 ggaattttta aaagctaaag caaatacttc aaaatcttct aattttgcaa tatctatttc
     6001 aaccttaact tccaaatctt taatcattgc aatctgatct cttactttag ctgcttcttc
     6061 gtaattttca ttttgtgcta aaacaagcat ttgtttttct aagtttttaa gcaaaacact
     6121 aggatttaaa agtgcgtgta tagcctcatc taaaatttca aggtattttt ccctgctgat
     6181 gagtttatca caaggcgcaa gacaacgaga aatttgataa aaaatacaag gggatttaca
     6241 acttgctttt tgctttaaag gatagtataa ataaagcgca tctaaaagct ctctagcgcc
     6301 tttaaaaaaa gggccaaaat atttaatttt gctttttttt actaattttc tagtgatctc
     6361 aaagcgtgga aattcttctt caaaatccac ataaatataa ggataagttt tatcatctct
     6421 tagcaaaata ttatattttg gatgcagttg tttgataaaa gaattttcta aaatcaaagc
     6481 atcagcctct gaattagtag caataaattc caaatgcact gtttcttcaa tcattttttg
     6541 aattcttaaa gaatttcttg gatttgcatg taaatttgga gtaaaagcaa aataagatct
     6601 aacacgattt ttaagatttt tagccttgcc tacatataaa agctttcctt cttgattgaa
     6661 gtattgataa acgccagtac tattaggaag agtttttaac tcattttcta aattctcttt
     6721 agtcaagatt agaacctttt tttataagct ctcttaaatc ttcaaatttc ttaaataatt
     6781 ttttatcttt aaagcaattt ttaaattcac ccttagaaag ctccaaataa gaatttttag
     6841 agagtttttc atcatttttg tttttatttg ccgcataagt gtatttttga gaaaagattt
     6901 ttatatcttt tatatcaaca aatccactta aaggatattt ctgcccatat gcttttatga
     6961 gaaatttaat ataaattttg ctatcatcat gatttaattc ttgataagct gctggatgta
     7021 aggttattat atttaaaata tgatttttta cataaatttt agcaatcaaa cgttgcttag
     7081 caagcggaaa agaacttaaa aaatctttgc aaaaaaataa ggtttttaaa ggcttataat
     7141 gaggtttatc catcaattca ttaataacag cactagcatt tttagtcatc ttaatattat
     7201 ttctttttcc cataagatga ttttagcatt tcttttctta attttcttct gtgcttgcgg
     7261 atataaaggc aaccctcaat acacaagcta tgaacaaaat ggttcagtaa aaaccattaa
     7321 aaaatacgaa caattacata ggtggtaaat aatgaaaaaa gcagatattt tagttttaga
     7381 ctttggctct caatacactc agcttatagc aagacgctta agggaacaag gagtttatgc
     7441 agaaatttta ccttttaatg taagcttagc tgatattaag gcgaaagaac caaaaggtat
     7501 tattttaagc ggaggtccag caagtgtata tgcaactgat gcgtattttt gcgataaagg
     7561 tatatttgac ttaaatctac ctgttcttgg aatttgttat ggtatgcagc ttatggcaca
     7621 tcattacaaa gctacagtag cacctgcagg acataaagaa tacggcaaag caaacataga
     7681 aattaaaaaa gataacgctt tgtttaaaaa tcttccaaaa aaacaaaccg tttggatgag
     7741 tcattctgat aaagtagaaa atttacctca aggttttgaa gttttagcca caagtgaaaa
     7801 tagccctttt tgtgtttttg gaaacgaaga taagaaattc tttgctctac aatttcaccc
     7861 agaagtacaa cacagcgaat ttggcaaaaa tatcttaaaa aattttgcta aatatgcttg
     7921 caattgtgaa agtatttgga atatgggttc ttttgcaaaa actcaagcag aaaaaatccg
     7981 tgaagaagta ggcaatgata aagtgctttg tgctgtaagt ggcggagtag atagtagcgt
     8041 agttgctgca cttttagcta gtgctataaa agagcaaatt atagtagttt ttgtagataa
     8101 tggactttta agaagtggag aaaaagaaca agttgaattt atgtttaaaa acactttagg
     8161 catcgatctc atcagcattg atgcaagtga aattttctta agtcgcttag ttaatgtcac
     8221 agatcctgaa caaaaaagaa aaatcatagg aaataccttt atagaagttt ttgaagaaga
     8281 agcaaaaaaa cataaagatg taaaatatct tgctcaaggc acactttata ctgatatcat
     8341 agaaagttct gttgtaggtg caagcaaaac cattaaaagc catcataatg tagggggctt
     8401 acctgaaaaa atgaatctta aactcataga gcctttaaaa gaaattttta aagatgaagt
     8461 gcgtgcctta ggacttgagc ttggacttag caaagaagta gtttatcgtc atcctttccc
     8521 tgggccaggt cttgctatac gcattatggg agaagtaaat cgcgctagct tagaactatt
     8581 acgcaaggct gatgtaattt tacttgagga acttaaaagt acaggttggt atgataaaac
     8641 ttggcaagca ttttgcgtac ttttaaatgt taaaagcgtt ggagttatgg gggataaccg
     8701 cacttatgat aatgcagttt gtatacgcgt tgtagatgca agtgatggta tgacagctac
     8761 cttctcgcat ttaccttacg aaattttaga aaacataagt cgccgtatca tcaatgaagt
     8821 agaaggtata aatcgcgttg tttatgatat ctcaagcaaa ccacctgcaa ctatagaatg
     8881 ggaataatcc attttttcta gctcttattt ttaatataaa atttttataa aaataaggct
     8941 agaatttatt taagaaattt caaggaagaa atatgcatgg aaaaatagct atttatatgg
     9001 attctacagg acgtggaacc gttacaaact cagcaaatac cttttttgac tttaatcgcc
     9061 aaatttggaa tgataaaaaa agtatgccaa gtgttggtat gcttgtggaa tttagaactc
     9121 tttctagcga aaaaaaagca gaagacggca aactcgttca aacaagcaaa accataacag
     9181 gtataaaacc ttcaaaattt caagaattca aagaagggga ttttatcact gagcatgatt
     9241 tttggaaaac tgataatgat gatgaattag aagacttgca aaactcaaga agaagtgctt
     9301 atataacaga actctataga acaacagact ttgacactat agaaaaaatt cctctttctt
     9361 ttactatacc tcaagctata caaaaatatt ttgcccatga aattttatcc gtagaaacgc
     9421 ttcaagccaa tctacaagat gaaaaggaaa ttccttgtat acttgattat cttatactta
     9481 aaagattttt atttaaagct tatgatactt taatttttat ggataatagc atagaccaaa
     9541 cccaatttag cgcattaaaa agcatcatga tgcatttaga gaattcgtat aagcaaatga
     9601 tggctgatca aaaaccaaat atcactaaaa tttttaacga aactttttta tctttgcagt
     9661 gtcattacca agctttagta gccaccatag atacaagaaa aaatcgtcta gcctcacttg
     9721 aagcacaaat gaaaacttta caatctgaaa taaatcttaa aagcaatgcg accgatgcag
     9781 accctgaaaa acttaaagca cgacaagaaa gattggctaa actacaaaaa gaagcagaat
     9841 actacagaac aacactaaaa agacttgatg ctataaggga agatttttat aagaaaaatt
     9901 acaatatttt cgaaaatgct tttaaacttt cacgagaaaa actctttaaa aaaattgtca
     9961 caggtttaaa cctatgtgca accataatgg atgtcaaaat ttggcactta tctttaaaat
    10021 catcaggggt taaaaattct tattttacta tgagtaatat agaaaattct ttctgttctc
    10081 tttcttttgc agaacattac ttaagtcgct taaataaatc cgctctaaat ccttttgatc
    10141 aaaaactttt agtgtatatt caaaaaatca caaaagaaca aagaaaaaaa tttttagttg
    10201 tcacatcgga tttagattta ttatgcaaat taaaaattga aaacttttca caaaatccgt
    10261 attatttagt aaaatacgca cctaaaaaag taaattatca atctttaatg cgtgataaca
    10321 cctttgatat agtctatatt gatgaaaaac atgtttggga aaatgttgcc gatattattt
    10381 tacaaggaaa gcattttgac aaatcaggaa aaaccaaatt taaactgatt taagacatag
    10441 aaatttaagc taaattaagt tataatttcc ttgcctaaac agtttgtagt atttaaagtg
    10501 atccaacaca tttttattaa ctgcgattgt gtgatttacc gtgttctgtg gcatcgtttg
    10561 agctttgaaa aaagcgagaa gttgcagcct ttaaaaatta cctagcggtt ttctttgact
    10621 ttttggggtc aatctttgtt aaacggctgt ttgggtttaa aaggagatat aaatgaaaat
    10681 aatgattttg ggtagtggtg caagagaata ttctattgct ttagccttaa gaagagtaga
    10741 caaaaattta gagttttatt ttgctcctgg aaatggcgct accgaaagtc ttggaacaaa
    10801 tttaaaccta aaagatccag tagttttagc aacctatgca aaagaaaaag gttttgatct
    10861 ttgtatagta ggaagtgaaa gttttttagc tgaaggggtt gtagatattt ttaaacaaca
    10921 aggacttgct atttttgggc caagtaaagc tgctgcaatg cttgaaacct caaaatcttt
    10981 tatgaaaagc tttcttaaaa aataccgtat caaaacagcc aaatttttaa acacaaatga
    11041 cattgaaaaa gcaaaaaatt ttatatatag tttaacccct cctatagtag taaaagccga
    11101 tggactttgc gcaggaaaag gtgttatcat agctaaaact catgaagaag ccatagaaga
    11161 aacagctaaa atgctgagcg gagaaagctt tggagatgct ggaaaactcg ttgtaattga
    11221 agaattttta gatggttatg aattaagcat ttttgcagta tgtgatggca atgattttgt
    11281 tttacttcct gcagcacaag atcacaaaaa attactcgat aatgatcaag ggccaaatac
    11341 tggtggaatg ggtgcttacg ctcctagctc tttggcgaat gaaagcttgc ttagaaaagt
    11401 tcaaaaagat attattttac caactttagc aggtatgaaa aaagaaggag cggaattttg
    11461 tggtgtttta tttataggtg ctatgatcgt tggaaataaa ccttacgtat tagaatttaa
    11521 cgttcgcttt ggcgatcctg aatgtgaagt tttaatgcct ttaatcgaag atcctttaga
    11581 gcttatttta gctgctactc aaagacgctt aagacactca aaaatcaaaa tcaaaaaaga
    11641 atttgcagta ggggttgtat gcgcaagtga aaactatcct tacaaaagtt caccaaaaag
    11701 cgaaattact gtaaataaca ttccagaaaa ctctcatatt tcttatgctg gagtaagcct
    11761 agaagatggc aaattaatgg ctgatggtgg aagagtttta gtttgcgttg gcacaggaaa
    11821 aagtatagaa gaagcgcaaa aaaatgctta taaactttgt gataatgtaa atttcaaagg
    11881 aaaacaatac agaaaagaca tcgctcatca ggttctgaaa tgaaagaaaa tttacaagac
    11941 cgcttagagc gtgaaaatct aaaaatagca agttttggaa aaagagttct agctttttta
    12001 atcgatgata tggttatttc tttgattgtg tttatcattt tttatgatcg tctaatccaa
    12061 gcaaaagatt tatttgaaac gactcaaatt ataggaaatt tttatcttgg cttcatcttg
    12121 cttcatttta gttatcaagc aatttttact tatctttatg gggcaagttt gggaaaaata
    12181 ttatgcaaaa ttatcatctt ggatgaaaat cttcttgaca aacccaatct catccaaagt
    12241 tgcatcagat ctgccataag acaagttagt gctatggcgt ttatgcttgg gtttgcttgg
    12301 gctttaagta atgatttacg caaagcttgg gaggattatc tagcaaggac aatagtagtc
    12361 gatgtggcgt aaattttccc tattgctagg aactagcata gctttaaatg cagcacaagt
    12421 tgatatttac gctcttgatg caaaaaaaga aggtgatatt cttactgcaa acaatgatgt
    12481 tgttattttt tctgattttt atttcatcac tgccaataaa gcaatttaca atgaaaaaac
    12541 cgaagatgtt gagctttttg gtgatgttaa catcctaagg ggacaaaacg aaagatcaca
    12601 ttctgattat gctaaaatca acctaaattc caatcaagtc gattttagta attttttctt
    12661 ttccaataac aatcttgaag tatggtttca aagcaaaaca agccatctaa atgataaagt
    12721 ctttgaaagc aaaatttcag cagtttcaag ctgcaatgtt gaagatcctg attgggaaat
    12781 tcgtttttca aaaggctggc ttaaccggga aactaatttt gttcatcttt acaatgcaag
    12841 attatatgtt aaaaataccc cagtttttta tctaccttat tttggattta gcgctgatac
    12901 tcatagacaa agcgggcttt taatcccaaa aatcgtttta aaaagtagcg aaggcttata
    12961 ctatgaacaa cctatttata tagccactca agaaaattgg gatttagaac ttgatccaca
    13021 aattcgaaca aaccgtggtt ttggacttta ttctacttta agatttcttg attctccata
    13081 ttcaacagga gaattaaatt ttggtgcttt tagggaaaat agctcctatt ttcacgatga
    13141 aaatttgaaa aatcaaaccc actatggaat agaactaaaa tactcaagag atgatttaat
    13201 caaatcttta ctcagtgata attttcaaga aggtctatgg atagatgcaa cctatctcaa
    13261 cgatgtggat tatttaaatt taggaagtag ggattatcga gatcttaact cgcttgtaac
    13321 ctccaaaatc aattattttt tagctgatga aaacaatttt tacggagctt atgcaagata
    13381 ttatatcgac acatctaaac ttagcaacaa tacaacctta caagaatatc caagctttca
    13441 atatcataga tttttaaata acctttttga tgaacgcttg cgttattcat ttgatgcttc
    13501 atttcataat ttttaccgac ctgctggttc ttatgcaaat gagctaaatt tagacttgcc
    13561 tatctcgtat cacaacgctt tttttggaga ctttttacac tttactttta cagaaagatt
    13621 ttatgcttct tttgtaaatt atagcaacga tcctgaaaga aaccatgagc attatttcag
    13681 aaacactcat gattttaatc tctacaccga tctttcaaaa gcttatgaaa atttctttca
    13741 tactttaaat ttaggggtga attacatttt accaggagca aaatcaggta aaatcacgca
    13801 agattatctt gaagaatacg acaaagaaaa cgaacataca agtctttata ctgtgcaata
    13861 tttctataac aacgaaggac aaaaaaaact caaacacaga atttcacttg actatctcaa
    13921 taaacaaaat gaattctatg aacttgaaaa tcttttaact tattatttta atgaaaacat
    13981 caatctcaac agcgaagtgc tttactctta tgagcaaagt cgctttacca atgtcatcag
    14041 ccaaatagaa gtcaatacaa attcaaaatt taattggatg ttttctcatg cttatcaaaa
    14101 cgatgagtat ggaaaatata gctttattgg tacaagagca aattatattg ccacacctaa
    14161 ttacaattta tttggtggaa tttggtttga tactcaaaga gctcatgcaa acatgtggga
    14221 acttggctat acctaccaaa gaaaatgttg gaactattct ttaatgtata gagaaagaat
    14281 cgatccacaa ctcacaagtg gtggcatcac agctaaaaat caaagcggag tttattttat
    14341 tttcaacttc tatcctttag gaggagtaaa atacgatttc tctttagcag aaagtgaaaa
    14401 caaaatttaa aaaggatgaa atttgctaaa tattttaaaa aattttacga atttattatc
    14461 tggtaaaaaa ggaaaaataa tgcaatacag catagaaatt aacaaaaata cagaaatatt
    14521 tgatatagac aaagtcgcca aacaagctgc cggtgctgtt ttaatgagac aaggcaaaag
    14581 cgttgttcta gctacagttg caagagaaga aaaacaagtt gaagaagatt ttttacctct
    14641 aaccgtccaa tacatcgaaa aagcttatgc cgcaggaaaa atccctggtg gttatgtcaa
    14701 aagagaaacc aagccaagcg atgcagaaac cttaacagca cgcattattg atagaagctt
    14761 acgccctctt tttccaaaag gctatgctta tccgactcaa atcgttgtga tggttctctc
    14821 agctgatcct aaagtagatt tacaagtaat gagcttaaat gccgcaagcg tggcacttta
    14881 tcttagtgat atacctatga aagctccagt atgtggtgtg cgtataggaa agatagatgg
    14941 aaatttcata ctcaatccaa acaatgaaga gcttcaaaat agcaccctag atctctatgt
    15001 agcaggtgta aaagatgagc ttttgatgat agaaatgaga gccttacctg atcaaaaaga
    15061 aaatgaaatc tttatcgaag ctccttatgc tgatgtttta actcaaacca cttcacaaaa
    15121 tatgaatgaa cttagcgaag atgaaatttt agaagctcta aatttagctc aaaaagctat
    15181 attaaatggt tcaaatgctt atgaagaagc ctttagcaaa cacaaaaaaa attctcaaat
    15241 cgaactaaaa aatgagattg aacatcctga aattttagct tttatagaaa ataatttcca
    15301 aaaacaaatc aaagaagcca tcaatcaaat ggcaaaaagc gaaagagcaa gcgaactaaa
    15361 taaaatcgct aaagaaattt taaatcttga aattgctaaa gactggagtg aagaaagtgt
    15421 cttaaatacc ttagctaaag tcaaacgcaa acttattcgt gagcaaattt taaatgaagg
    15481 caaaagagct gatggtagaa gtttaaacga ggttcgtcct attagtatag aaaccaacat
    15541 cttaccaaac gctcatggtt cttgtctttt cactcgtgga caaactcaag ccctagtggt
    15601 tgcaacctta ggcggagaaa acgattctca aatgatagac ttgcttacag aaaaaaatcc
    15661 tataagcgaa cgctttatgg taaattataa ttttccaggt ttttcagtag gcgaagcaag
    15721 tcctatcaaa gctccaggaa gaagagaact aggacatgga aatttagcca aaagagcact
    15781 ttatccaagt gtggatgaaa actatcctta tgtaatccgc ttagttagtg aaattttaga
    15841 aagcaatggc tcaagttcca tggcaacggt ttgtggcgga tctttagcct taaaagcagc
    15901 aggagtgcca agcttaaaac ttgttgcagg agtagccatg gggcttatct ttgaagataa
    15961 caagtatgct gttttaacag atatcatggg acttgaagat catgatgggg atatggactt
    16021 taaagtagca ggaagcaaag acggcgttac tgctcttcaa atggatataa aactaggtgg
    16081 aatcgatcaa gaaatactaa aacaagcttt ataccaagcc aaagaaggaa gaattcacat
    16141 tctaaatatc atggaagaag ccgccaaaga aatcatagtc aatgaagaag ttttacctaa
    16201 acttgagctt tttagcgttg atccttcaaa aatcgttgat atcataggac aagccggaaa
    16261 aaccatcaaa gaaatcgtag aaaaatttgg cgtttctata gacttagatc gcgaaaaagg
    16321 tgaagtaaaa atagcaggta gtcaaaacga gcaaatcaaa gccgcaaaag actacatcat
    16381 aaacatcaca agctctcaaa aaggaactaa aaaaggccct aaagacaaag atatatcagg
    16441 ctttgaactt gggcaagaat ttcaaggtat tgttaaaaaa atcgctcctt ttggagcctt
    16501 tgtggaactt aaaaatggtg ttgatggttt attgcatagt tcaaaaatca agcatcttaa
    16561 tttaagcgaa aaccaaagtt taaaggtgaa aatcagcgaa attaaaaacg gaaaaatttc
    16621 tgtggatttg tgcgagtgag tgaattttta actcatcctt ttgagccttt ttttgacaaa
    16681 gattctaaaa tcttaatttt aggatctttt ccttctatta aatcaagaca agatggcttt
    16741 tattatcaac acccaagaaa tcgtttttgg cctatactag aaacactttt taatgcaaaa
    16801 ttagaaaata tcacagaaca acaagccttt ttaagaaaaa aacatatcgc tctttgggat
    16861 gtacttcaaa gttgcaagat aaaaaattca gatgataaaa caataagtta tgcaaaagcc
    16921 aatgatttaa acctaatcct ttctcaaacc aaaattcaag ccatttttac tacaggacaa
    16981 agtgcttata gattttttgt taaattccac cctcgcttag aagccatagc cctaccctca
    17041 acttctcctg caaatttaaa tttttctttt gaacagcttt tacaaaacta tgaaataatc
    17101 aa
//
LOCUS       DAPIWQ010000020        16352 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.020, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000020 DAPIWQ010000000
VERSION     DAPIWQ010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16352
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.020"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..969
                     /locus_tag="RJ267_000481"
     CDS             <1..969
                     /locus_tag="RJ267_000481"
                     /inference="COORDINATES: protein motif:HMM:NF019310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7388364.1"
                     /translation="NMEKSLLFHFRRIGVEFIIFSVYAVFSISWAATGSLMPLISNDL
                     ALNTQQATLITSMIVVAKIFGASFTAFLVYKFGLKKGYFLGCILMSSGIFLSFVDSYS
                     GILIIRFLTGLGSACALVCLVPIAQQWFEKKALHFVISFNITSNLVGITLGLVLAESI
                     SNYFGNWRDSLSFYAWINLILLILWLFVGKDENKKEEKKNNAKDLIYALKSRVTWGMI
                     IFYIGPILFLNSLFTFLPTFYAQYAGFSKELADFAKKEIPALANFAIIFGPYLGLFFK
                     RKNISFKIMLLSGGACIFICGFCMLFLQNLVLIQIFAVLSGIFYSM"
     gene            1036..1224
                     /locus_tag="RJ267_000482"
     CDS             1036..1224
                     /locus_tag="RJ267_000482"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388365.1"
                     /translation="MSAFWSITFVILSFNLWVVSWSVDKTHSFTLGFVYIFALIFISA
                     ILAQFVLPRREKFIQGEK"
     gene            1226..2377
                     /locus_tag="RJ267_000483"
     CDS             1226..2377
                     /locus_tag="RJ267_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7388366.1"
                     /translation="MNLIPEILDLQGEFEKIRHQIHENPELGFDELCTAKLVAQKLKE
                     FGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSKKENVMHACG
                     HDGHTTSLLLAAKYLASQNFNGALNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGW
                     HNMPFGSDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLIVALQS
                     IVSRNVDPQNSAVVSIGAFNAGHAFNIIPDIATIKMSVRALDNETRKLTEEKIYKICK
                     GIAQANDIEIKINKNVVAPVTMNNDEAVDFASEVAKELFGEKNCEFNHRPLMASEDFG
                     FFCEMKKCAYAFLENENDIYLHNSSYVFNDKLLARAASYYAKLALKYLK"
     gene            complement(2381..3121)
                     /locus_tag="RJ267_000484"
     CDS             complement(2381..3121)
                     /locus_tag="RJ267_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaaA family protein"
                     /protein_id="HDV7388367.1"
                     /translation="MKILFSPSESKNENCVKNPINENSFIFKELFPYRMEALKHYEEF
                     IKNASLQNLQELFGIKNENEIDKFKHDLKQAPTQEAILLYTGVSYEYLNFKALDKKSQ
                     AYILENTLIFSNLFGIVRANDTLPFYKFKQGAKIGNFAIEKFYKEHFSKALDEYLENE
                     EILDLRAGFYDKFYTPKKKFYTYKFVKNGKVISHFAKAYRGILLSISAKNQVKNNKEL
                     LANLPSNLKLKEIQIKGLKEEIVLEILD"
     gene            complement(3213..4331)
                     /locus_tag="RJ267_000485"
     CDS             complement(3213..4331)
                     /locus_tag="RJ267_000485"
                     /inference="COORDINATES: protein motif:HMM:NF027978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="JlpA-like lipoprotein"
                     /protein_id="HDV7388368.1"
                     /translation="MKKGIFLSIGIAVLFSACGNSIDEKTVKKYENQLNQTVKQEIAS
                     LSQDSGIKIEFSDFKCNADGDFIACLSPNFKTLTKDNNDEYQELFQAKNIKIRSNEIY
                     KGEANASISIKEYYNDLFKNQKSIQSNLVFEDFKLGEKVVSDINASLFQQDPKISSFI
                     NKLSSDSYTLSFDNSINKQENNYLDNLDIKFYNAKLNFNTNLNINLKEDLLNYLDSKG
                     IKFNTQTLVMDKQAINELLNIANYEQASDFSNTIQKYIILNNFKIDSTLKTEGVFSSY
                     IATAKENLQTLKAQSQNEEQALIFDKALAILNNITQNDDYKLNLDLKFKNIPVSDYST
                     QGIDSIEKLSINNQDATEALKIILPFIMFSMLMGGASF"
     gene            4550..5389
                     /locus_tag="RJ267_000486"
     CDS             4550..5389
                     /locus_tag="RJ267_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HDV7388369.1"
                     /translation="MKKILLSVLTAFVAVVLAACGGNSDSKTLNSLDKIKQNGVVRIG
                     VFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTAD
                     AYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELG
                     NKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG
                     GKI"
     gene            5429..6676
                     /locus_tag="RJ267_000487"
     CDS             5429..6676
                     /locus_tag="RJ267_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7388370.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFAKVFFPQNDAFW
                     MQINAYIAFGAAYLARPFGSIVMAHFADRYGRKNIFYISMLLMVLPSFALAFLPSYES
                     IGIFATLILFTIRILQGLAVGTEVSGAWIYVSEFVKGRQIPLALGFISATLTIGLLLG
                     NIATLGIRSYFTPEEVQSYAWRIPFIIGGFFGILALFLRNKLSETPEFIKVQNEKKIL
                     SFPLFEALKTHKMSMLVCFLMTMVLTSGVATLMILPKYFESLLAMSKTSALWVQNFAI
                     LAVIFGALFQGFLASKWGSYKICSIFSIAFIIFGMLFGFYDENFLFYFLLACFAQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYAILGFLTPFIVNAFYKEYLGIYLAIVGSCS
                     LLCVFLLKRVFARSKIKELSIVF"
     gene            complement(6659..7927)
                     /locus_tag="RJ267_000488"
     CDS             complement(6659..7927)
                     /locus_tag="RJ267_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HDV7388371.1"
                     /translation="MQNVIENFKQLCKIPHCSYETEQMKEFLSSYAKDKGFKVSVDKA
                     GNIHAIKGKPKICLQSHYDMVCMGDAPNLEVYEENGFLRAKNSSLGADNGIGIAIMMS
                     AMAEFENLECLFTNDEEVGLMGVNLLEHTLESKMLLNLDHESDDEIMIGCAGGVDIEA
                     SLSFNTLRKKGKIYELCAQNFKGGHSGINIIRNEKSSIKEMAKFIQENEGEIISFEGG
                     ERINSIPKHAKALVHFKDEVKSNNWIKCEFKEENEFEICDQSKKLLSLINSFTHGVRA
                     YDENLDIVQTSINLATLRMQDNQIKFALFARSNILDGLKQVEFETLEFFKAFDFKIRS
                     FNFYPPWEGKPNALSDMVFKALKKVSPNAKVSAIHAGLECGIIEKKQELLCASIGPNI
                     HNPHSTDEHCEIASVEKISKVVFEVLKDNA"
     gene            7995..8522
                     /locus_tag="RJ267_000489"
     CDS             7995..8522
                     /locus_tag="RJ267_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HDV7388372.1"
                     /translation="MRINYKKIFNLRKLLSDPKKLFSVLIFTLVVVFIQNYIAQNSSF
                     EGKVVRIIDGDTIEVNHENKLARIRFFGIDAPELKQSFGKQSKEALSRILSGKQVEII
                     YKNKDTYGRIVAIVKLNDVDINRFLVSKGYAWADTYYSNAYTKEQENAKKNHLGLWKE
                     SNPIEPYKWRKHNKF"
     gene            8531..8704
                     /locus_tag="RJ267_000490"
     CDS             8531..8704
                     /locus_tag="RJ267_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7388373.1"
                     /translation="MKKYTLMVLLVLGISGCFVNERGISNRFYDDCKEYYDGSGTYHK
                     DCPKNWVDIKMTP"
     gene            complement(8705..9283)
                     /locus_tag="RJ267_000491"
     CDS             complement(8705..9283)
                     /locus_tag="RJ267_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388374.1"
                     /translation="MAKKDNFEEYAQLEEYASAEDISRVRAELLTCPELNTSLAGTII
                     EIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEVKMFEGTIQVVSTDEHIFKLKRPPL
                     NTVKPTENQEQGAKINNPEAVAAALMASVGGK"
     gene            complement(9356..10246)
                     /gene="cmoB"
                     /locus_tag="RJ267_000492"
     CDS             complement(9356..10246)
                     /gene="cmoB"
                     /locus_tag="RJ267_000492"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HDV7388375.1"
                     /translation="MSRIKMQENLLEKQFLNHPLYAKIQELKALNLACNFSLGDSVNL
                     STNSQAKDEILAIAKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVA
                     DIGCNNGYYMFKMLEFNPAKLIGFDPSIKYRLQFELINALAKTPIKYELLGVEDLPSY
                     SLKFDVIFCLGVIYHRSDPIKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYS
                     KIPNIYFVPSISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKD
                     KNLTIEGYEAPKRVYIRIKI"
     gene            complement(10342..12066)
                     /locus_tag="RJ267_000493"
     CDS             complement(10342..12066)
                     /locus_tag="RJ267_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HDV7388376.1"
                     /translation="MLEQSPYKEDANSKNYNNTLKVKDGVIIIDHSNTSDDNNSKTIN
                     TKKNTQKNQPNLSNDNTLKTKTPNSNTPSLKNTSKEESIYKVSFSFHITNKNINFKDL
                     GLDEQVLQEALNDYKKESISVQDLQDIANIISYYVQVSGYPAATAYIPQQELKDQIQI
                     NITLGVLGKYVVQNNSSVRDYAIESKLPNHKGEIITTKLVEDAVYKVNEMYGIQTLAS
                     LKAGDNPGKTDVVIETTPSDSFVSVLFYGDNYGIKESGRYRDGASMSFNNIAHQGDSL
                     NAYLQRSDEAQTNYSISYTTFLGNLKITPSYSKRNYALGGAYKNANFIGTSENLGIDL
                     KYPLWITTYNSFYLTSSYYHKKLSNSRLNIMTIDKSSDTISFSIEGVYNGISNDSFSY
                     SANVSYGNVKDGGTTILGMSSKTDGDGFGKFAKLNVNLNNAYFFNDTFTHLFSLNYQQ
                     VVNGATLDSSETISLGDPYGVRAYNNGDGEGDNAVVASFGLRMATPLKDFYITPFYDI
                     GYSWYENDSKLYRASETNYMDAYGLQLLYNKTGNFYVKLDLARALKKYKLDDDYSSKA
                     YVSFGKYF"
     gene            complement(12124..12264)
                     /locus_tag="RJ267_000494"
     CDS             complement(12124..12264)
                     /locus_tag="RJ267_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388377.1"
                     /translation="MLKMIKIQKVKSLLDLVKKLKNKQSLKIKNQTNTKENLNKTHYL
                     TI"
     gene            complement(12252..13891)
                     /locus_tag="RJ267_000495"
                     /pseudo
     CDS             complement(12252..13891)
                     /locus_tag="RJ267_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865998.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
     gene            complement(14260..16251)
                     /locus_tag="RJ267_000496"
     CDS             complement(14260..16251)
                     /locus_tag="RJ267_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388378.1"
                     /translation="MREDEVLSFKARHGVNTAGHSIKTVRVLPFLITAKTDHADASYN
                     KLILEQGELSSVFYLKPKDTHIKNPSNSKSNQRMNFLMSSTFTHYGNASYNQTILQKD
                     AHISMGVENTYDLALNGAPYLIGAIATYGDSTNNSLNIEAGSSVEFFTSLPKKDKNGN
                     NTFDERITHLVGGLAYQGNVKNNKIFIKDANMIIHGPSKAYASLAAAHISAGYIDSGT
                     DKNFQASKNLLDIDGFNLDMYMNHDKQPLAYNSVLFADFWGGKTEQGQALDNTINLKD
                     IKNLKKDKNNENIFAQALFNFYAGASNNGEANYNTLNIELKHPLEIANNFLGYNQHSF
                     YGGFATKGANHNTINIKNDLTTTDLSQSYKDALNIVAARTLEGSADYNKVYINNSMST
                     LPVYIYTAKKNILNNQDFYPSSANNNEVVIKDFASFRNLTVLTEAKEASYNTINYNNV
                     QSITDVSNIDKGSKIIIRALDKANHNTIDIKNYSSNAADNAYLIMAYNEAAYNKIIIN
                     DTLFGVASDKREGILSIIAGLSNNAHDNTLIINNLNLDEYKNNNSIFIAPSAITGLSE
                     AKSYNNTLYIGGNLNIFKNTFIDILAGALVHYEDNYSASNAAAPSDISLSKNNRLILN
                     TKVEARIINNFEHYYLIVSNKINTTPLLKSYDAPINISS"
BASE COUNT         5144 a         2302 c         2577 g         6329 t
ORIGIN      
        1 aatatggaaa aatcactttt atttcatttt agacgcattg gagttgaatt tatcattttt
       61 agtgtttatg ctgtttttag tatctcttgg gcagcaacag ggtctttaat gcctttgatt
      121 tcaaacgatc ttgccctaaa tactcagcaa gctactttaa tcactagcat gatagtggtt
      181 gcgaaaattt ttggtgcttc atttactgct tttttggttt ataaattcgg attaaaaaag
      241 ggatattttt taggctgtat tttaatgagt tcgggtatat ttttaagttt tgtagatagt
      301 tatagtggta ttttgattat aagattttta acagggcttg gttcagcttg tgctttagtt
      361 tgcttagtgc ctattgcaca gcaatggttc gaaaaaaaag ctttacattt tgtaattagt
      421 tttaacataa cttcaaattt agtaggcatt accctaggac ttgttttagc tgaaagcatc
      481 tcaaattatt ttggaaattg gagagattct ttatcatttt atgcttggat taatttgatt
      541 ttattgattt tgtggctttt tgtaggtaaa gatgagaata aaaaagaaga aaaaaagaat
      601 aatgcaaaag atcttattta tgctctaaaa tctcgtgtta cttggggtat gattattttt
      661 tacatagggc ctattttatt tttaaattct ctttttactt ttttaccaac tttttatgca
      721 caatatgcag gttttagtaa agaattagct gattttgcta aaaaagaaat tccagccttg
      781 gctaattttg ctattatttt tggtccttat cttggattat tttttaaaag aaaaaatatt
      841 tcttttaaaa taatgctatt gtctggagga gcgtgtattt ttatatgcgg attttgtatg
      901 ttatttttac aaaatttagt attgatacag atttttgctg tgttatcagg cattttttat
      961 tctatgtagt ttccattttt ctttaattta ccttcagaac taaaaaattc caatccaaat
     1021 caaactgctt atattatgag tgctttttgg agtattacct ttgttatact atcatttaat
     1081 ctatgggtag tatcttggag tgttgataaa acccatagtt ttactttggg ttttgtttat
     1141 atttttgctt tgatttttat ttcagcgatc ttagcacaat ttgttttacc tagaagagaa
     1201 aaatttatac aaggagaaaa atagaatgaa tttaattcca gaaatactag acttacaagg
     1261 cgaatttgaa aaaattcgtc atcaaattca tgaaaatcct gagcttggtt ttgatgaatt
     1321 atgtactgca aaattagtgg cgcaaaaatt aaaagaattt ggttatgagg tttatgagga
     1381 aataggaaaa acaggcgttg tgggggtttt aaaaaaggga aatagcgata aaaaaatagg
     1441 acttcgtgca gatatggatg ctttgccttt acaagaatgc acaaatttgc cttataaaag
     1501 caaaaaagaa aatgtaatgc atgcttgtgg tcatgatgga catactactt ctttattgct
     1561 tgctgcaaaa tatttagcaa gtcagaattt taatggcgct ctaaatcttt attttcaacc
     1621 tgctgaagag ggtttgggtg gtgctaaggc aatgatagaa gatggattgt ttgaaaaatt
     1681 tgatagtgat tatgtttttg gatggcacaa tatgcctttt ggtagcgata agaaatttta
     1741 tcttaaaaaa ggtgcgatga tggcttcttc ggatagttat agtattgaag ttattggaag
     1801 gggtggtcat ggaagtgctc cagaaaaggc aaaagatcct atttatgctg cttctttgct
     1861 tattgtggct ttacaaagca tagtatctcg caatgttgat cctcaaaatt cagcagttgt
     1921 aagcatagga gcttttaatg caggacatgc ttttaatatc attccagata ttgcaacgat
     1981 taaaatgagt gttagagcat tagataatga aactagaaag ctaactgaag aaaaaattta
     2041 taaaatttgt aaaggtattg cgcaggctaa tgatatagag attaaaatca ataaaaatgt
     2101 tgttgcacca gtgactatga ataacgatga agctgtggat tttgctagtg aggttgcaaa
     2161 agaattattt ggcgaaaaaa attgtgaatt taatcatcgt cctttaatgg caagtgagga
     2221 ttttggattt ttttgcgaaa tgaaaaaatg tgcctatgct tttttagaaa atgaaaacga
     2281 catttattta cataattcta gttatgtttt taatgataag cttttagcta gggctgcaag
     2341 ttattatgcg aagctagctt taaaatactt aaaataaaaa ctaatctaga atttcaagca
     2401 caatttcttc ctttaaacct ttgatttgaa tttctttgag ttttaggttt gaaggaaggt
     2461 ttgctaaaag ctctttattg ttttttactt ggttttttgc acttatggag agtaaaattc
     2521 ccctataagc tttagcaaaa tgactgatga ctttaccatt ttttacaaat ttataagtat
     2581 aaaatttctt ttttggggtg tagaatttat cataaaatcc tgctctaagg tcaagtattt
     2641 cttcattttc taagtattca tctaaggctt tactaaaatg ttctttataa aatttctcta
     2701 tggcaaaatt tcctatttta gccccttgct tgaatttata aaagggtagg gtatcattag
     2761 ctcttacaat gccaaaaaga ttagaaaata taagagtatt ttctaaaata taagcttgac
     2821 tttttttatc taaagcttta aaattaagat attcataact taccccagta taaagcaata
     2881 tagcttcttg ggtgggagct tgttttaagt cgtgtttaaa tttatcaatt tcattttcat
     2941 ttttaatgcc aaaaagttct tgtaaattct gtaaacttgc gtttttgata aattcttcat
     3001 aatgctttaa agcttccatt ctataaggaa ataattcttt aaatataaat gagttttcat
     3061 tgataggatt ttttacgcaa ttttcatttt tactttcgct aggggagaat aaaattttca
     3121 ttttagcctt ttttgttaat attatgaaaa cattaagagc aaagaattta atcttgcttt
     3181 taatgttttt gaagttttta tcattttaaa atttaaaatg acgctccgcc cattaacata
     3241 gaaaacatga taaatggaag tataattttt aacgcttctg tggcgtcttg attgttgatg
     3301 cttagttttt ctatgctgtc gattccctgt gtgctatagt cactaacagg gatgttttta
     3361 aattttaaat caagattgag tttataatca tcattttgag tgatattgtt taaaatagct
     3421 aaagctttat caaagattaa tgcttgttct tcattttgac tttgagcttt taaggtttgt
     3481 aaattttcct tagcagttgc tatatagcta ctaaatacgc cttcggtttt aagagttgaa
     3541 tcaattttaa aattatttaa gatgatgtat ttttggattg tattgctaaa atctgaagct
     3601 tgttcgtagt ttgctatatt aagaagttca ttgatagctt gtttatccat aactaaagtt
     3661 tgagtgttaa attttatacc cttagaatca aggtaattaa gcaaatcttc ttttagattt
     3721 atatttagat ttgtattgaa atttaatttt gcgttataaa attttatatc aagattatct
     3781 agataattgt tttcttgttt gtttatggag ttatcaaatg ataaagtata agaatccgag
     3841 cttaatttat tgataaaaga gctgattttt ggatcttgtt gaaataagct tgcattgatg
     3901 tcactaacaa ctttttctcc aagtttaaaa tcttcaaaaa ccaaatttga ttgtatgctt
     3961 ttttggtttt taaaaagatc gttgtaatat tctttaatgc taattgatgc atttgcttcg
     4021 cctttgtaaa tttcatttga gcgaattttg atattttttg cttgaaatag ttcttgatac
     4081 tcatcgttat tatcttttgt aagagtttta aaatttggac ttaaacacgc tataaaatca
     4141 ccatctgcat tgcatttaaa atcagaaaat tcaatcttta ttccagaatc ctgagaaagg
     4201 cttgcaattt cttgtttaac tgtttgattt agttgatttt catatttttt aactgttttt
     4261 tcatctatgg aatttccgca agctgaaaac aaaacagcta ttccaataga gagaaaaata
     4321 ccttttttca tagttttctc cttaaaaatt taaaaaaaga ttatatcttt ttttacttaa
     4381 aatttaaaca atgctaaaag agagtgtgag attaattaca tttttacaca taggaaaatc
     4441 tttttagttt gtttcaaatg cattatttat aattttaagt ataattaact ttgcaattat
     4501 tatatatttt tgcaatagct ttaagcttat ttttaaagaa aggaaatgta tgaaaaaaat
     4561 acttctaagt gttttaacgg cctttgttgc agtagtattg gctgcttgtg gaggaaattc
     4621 tgactctaaa actttaaatt ctcttgataa gatcaagcaa aatggagttg ttaggattgg
     4681 ggtatttggc gataaaccac cttttggtta tgtggatgaa aaaggaaaca atcaaggcta
     4741 tgatatagct ttagctaaac gcatagcaaa agaacttttt ggcgatgaaa ataaggtgca
     4801 atttgttctt gttgaagctg caaatagggt tgagttttta aaatcaaata aagtagatat
     4861 tattttggct aattttactc aaactccgca aagggcagag caggttgatt tttgctcgcc
     4921 ttatatgaag gtagctttag gcgtagctgt accaaaggat agtaatataa ctagcgtaga
     4981 agatttaaaa gataaaacct tgcttttaaa caaaggcaca acagcagatg cttattttac
     5041 gcaaaattat cctaatatta aaactttaaa atatgatcaa aataccgaaa cctttgccgc
     5101 tttgatggat aaaagaggcg atgctttaag tcatgataat accttacttt ttgcttgggt
     5161 gaaagatcat cctgatttta aaatgggtat taaagagtta ggtaacaaag atgttatcgc
     5221 accagcggtt aaaaaaggcg ataaagaact taaagaattt atcgataatt tgatcatcaa
     5281 actaggccaa gagcagtttt ttcacaaggc ttatgatgaa actttaaaag ctcattttgg
     5341 agatgatgtt aaggccgatg atgtagtgat tgaaggtgga aaaatttaat aaagggcttt
     5401 ttgcccttta gttgatttag gataaaatat gcaaaaaaaa tacaaaaata ttatttatgc
     5461 ttctttgggt ggaattttag aattttatga ttttgtgctt tttgcctttt ttttggatat
     5521 ttttgctaag gtattctttc cgcaaaatga tgctttttgg atgcagataa atgcttatat
     5581 agcctttggt gctgcttatt tagcgcgtcc ttttggttct attgtgatgg cacattttgc
     5641 tgatagatat ggaagaaaga atatttttta tatttctatg cttttgatgg ttttgcctag
     5701 ttttgcttta gcttttttac caagttatga aagtataggt atatttgcta ctttgatttt
     5761 atttactatt cgtattttgc aaggtttagc cgttggaact gaggtgagcg gagcttggat
     5821 ttatgtgagc gaatttgtta aagggcgtca aattcctttg gctcttggtt ttatttcagc
     5881 gactttaacc ataggtttat tgctaggaaa tattgccact ttgggcataa gatcttattt
     5941 taccccagaa gaagttcaaa gctatgcttg gagaattcct tttatcatag gaggattttt
     6001 tggaatttta gctttgtttt taagaaataa actcagcgaa actccagaat ttataaaagt
     6061 tcaaaatgaa aagaaaattt taagttttcc attgtttgaa gctttgaaaa ctcataaaat
     6121 gagtatgctt gtttgttttt taatgaccat ggttttaaca agcggtgtgg caactttgat
     6181 gattttgcct aagtattttg aaagtctttt agctatgagt aaaacttctg ctttatgggt
     6241 gcaaaatttt gctattttag cggtgatttt tggagcttta tttcaaggtt ttttagcaag
     6301 caaatgggga agctataaaa tttgctctat ttttagtata gcttttatta tctttggtat
     6361 gctttttggt ttttatgatg agaatttttt attttatttt ttactggctt gttttgcaca
     6421 aggtattatt actttcgcgc ctgtttttat gacgcaaatt tttaaaagcg aacttaaatt
     6481 tagcgggctt agttttgctt ataatatttc ttatgcgatt ttaggttttt taaccccttt
     6541 tatagttaat gctttttata aagagtattt aggtatttat cttgctatag tgggatcttg
     6601 ctccttgctt tgcgtgtttt tgttaaaacg cgtttttgca agaagtaaga ttaaagaatt
     6661 aagcattgtc ttttaaaact tcaaaaacaa ccttagatat tttttcaact gaagcgattt
     6721 cacaatgctc atcagttgaa tgaggattat ggatatttgg gcctatagaa gcgcataaaa
     6781 gctcttgttt tttctctata atgccacact caagccctgc atggatagct gaaactttgg
     6841 cattaggcga tactttttta agtgctttaa aaaccatgtc gctaagtgcg tttggtttac
     6901 cttcccaagg tggatagaaa ttaaaacttc ttattttaaa atcaaaagct ttgaaaaatt
     6961 ctaaagtttc aaattctact tgcttaagtc catcaagtat attagatctt gcaaaaagtg
     7021 cgaatttgat ttggttatct tgcattctta aagtagctag gttaatgctt gtttgaacta
     7081 tatctagatt ttcatcataa gctctaactc catgagtgaa agaatttata aggcttaaaa
     7141 gttttttact ttgatcgcaa atttcaaatt cattttcttc tttaaattcg cattttatcc
     7201 agttattact ctttacttca tctttaaaat gcactaaagc tttggcgtgt ttaggtatag
     7261 aattgattct ttctccgcct tcaaaagaaa tgatttctcc ttcattttct tgtatgaatt
     7321 tagccatttc tttgatggaa cttttttcat tgcgtatgat atttatgcct gagtgtccac
     7381 ctttaaaatt ttgcgcacaa agctcgtaaa ttttaccctt ttttctaagg gtattaaaag
     7441 acaaacttgc ttctatatct actccacctg cacagcctat catgatctca tcatcgcttt
     7501 catgatctaa atttaaaagc attttagatt ctaaagtgtg ctcgagtaaa ttcactccca
     7561 tgagtcctac ttcttcatcg tttgtaaaaa gacattctaa attttcaaat tcagccatag
     7621 cactcatcat gatggctata cctatgccat tatctgcacc aagacttgaa tttttggctc
     7681 ttaaaaagcc attttcttca taaacttcta agtttggtgc atcgcccata cagaccatat
     7741 cataatggct ttgtagacaa atttttggtt tgccttttat ggcatggata tttcctgcct
     7801 tatctacact caccttaaag cctttatctt tggcgtaaga gcttaaaaat tctttcattt
     7861 gttctgtttc ataactgcaa tgaggaattt tgcataattg tttaaaattt tctataacat
     7921 tttgcatttt atctcctttg ttttgataaa attatggcat attttttaaa atttaaaggc
     7981 aaaatgatta aaaaatgaga ataaattata aaaaaatatt taatctgaga aaattactaa
     8041 gtgatccaaa aaaacttttt tctgtattaa tcttcactct tgtagttgtt tttatccaga
     8101 actatattgc ccaaaattct agttttgaag gaaaagtagt tagaattatt gatggagata
     8161 ctatagaagt taatcatgaa aacaaactcg ctagaataag atttttcggt atagatgcac
     8221 cagaacttaa acaaagtttt ggaaagcagt caaaagaagc tttaagtaga attttaagtg
     8281 gcaaacaagt tgaaattatt tataaaaata aagatactta tggtagaatt gttgctattg
     8341 taaagcttaa tgatgttgat attaatcgat ttttggtaag caaaggctat gcttgggctg
     8401 atacttacta tagtaacgct tataccaaag aacaagaaaa tgctaagaaa aatcatttag
     8461 gtctttggaa agagagtaat cctatagagc cttataaatg gagaaaacac aataaattct
     8521 aaggaaaaac atgaaaaaat atactttaat ggtgctatta gttttaggaa tttctggatg
     8581 ttttgtaaat gaaagaggga tttcaaatcg tttttatgat gattgtaaag agtattatga
     8641 tggaagcgga acttatcata aggattgccc aaaaaattgg gtagatatta aaatgactcc
     8701 ttgattattt tccacccaca gaggccatta atgcagctgc tacggcttct ggattgttga
     8761 ttttggcacc ttgttcttga ttttctgtag gtttaacagt gttaagtggc ggacgcttga
     8821 gtttaaatat atgctcatcg gtgctaacaa cttgtatcgt tccttcaaac attttaactt
     8881 ctttaacatg tccaaccact tttacatctc tttttttgga ggtttcgtca aaaagtgcat
     8941 gagcttcaag ttctaaaaca tcgcctaatt taagcggagc ataaaaaaaa cattttgatc
     9001 caataatcac tgaaaattct ttattgatag aggcttgtgc tacatagttt gctgcagcga
     9061 aaataaaggc atcaaaaatc aatccttgat catctgctac catttcgctt gtggttatta
     9121 aaattgattt ggcatagttt ttatcaattt cgataatggt tccagcaagt gaggtgttta
     9181 attcaggaca agtgagtaat tctgctctaa cgcgagatat atcttctgca gatgcgtatt
     9241 cttcaagttg tgcatattct tcaaaattat ctttttttgc catatctaac ctttaaattc
     9301 tacttatcta cttcaaaata tctaaaattc aatatcggca aaaaataaaa agaatttata
     9361 ttttaatgcg tatataaact cttttgggtg cttcatagcc ttcaatggta agatttttat
     9421 cctttggatc taagaaattt tccagcgaaa aagagtctat ccattctgtt tttctttgtt
     9481 cattttcatc ggtttttttt gtagccaaaa cttcaaattc tttaaatcct gctctttcac
     9541 accagttttt taatgcacta atgcttggta caaaataaat atttggaatt ttagaataag
     9601 ttttattagg cacaagagcg atttctctct catcttctat atacatggta tctaaaaaaa
     9661 caactccatt tttattaagt cctgctttta aatcttttag catttttata ggatcacttc
     9721 tatgataaat caccccaaga cagaaaatca catcaaattt caagctatag cttggaagat
     9781 cttctacgcc taaaagttcg tattttatag gagttttagc taaagcgtta atgagttcaa
     9841 attgcaaacg gtatttgata gaaggatcaa aacctatgag ttttgcagga ttaaattcaa
     9901 gcattttaaa catataataa ccattattac agcctatatc agcaacgcat ttttgagaaa
     9961 tttcgttcat gaaaggcttt agaatgttga atttaataaa actttgccat tctgtatcga
    10021 tgaaaagatc gtctatttta aaaggacctt ttctccatgg tttaagttct tttgctatag
    10081 ctaagatttc atctttggct tgagaatttg tagataaatt cacgctatcg cctaaagaaa
    10141 aattacaagc aagattgaga gctttaagtt cttgaatttt agcgtataaa gggtgattta
    10201 gaaattgttt ttcaagtaaa ttttcttgca tttttatcct tgacatttgc ttttaatgct
    10261 aaattataac attaaaagct tttatggcaa tataaatctc atatgcatta agtatttgat
    10321 caaaaataaa tttttaaaaa ctcaaaaata cttcccaaag cttacataag ctttagaact
    10381 ataatcatca tctagtttat atttctttaa agctctagct aaatcaagct tgacataaaa
    10441 attccctgtt ttattataaa gcagttgtaa accataagca tccatatagt ttgtttcact
    10501 tgctctatat agtttagaat cattctcata ccaagaataa cctatatcat aaaaaggagt
    10561 gatataaaaa tcttttaaag gagtagccat tctaagtcca aagctagcca ctacagcatt
    10621 atctccttct ccatctccat tattataagc ccttactcca taaggatctc ctaaagatat
    10681 agtttcacta ctatctaatg tagctccatt gacaacttgt tgataattta aactaaaaag
    10741 atgagtaaaa gtatcattaa agaaataagc attgttaaga ttgacattga gtttagcaaa
    10801 ttttccaaag ccatctccat ctgttttaga actcattcct aatatagtag ttcccccatc
    10861 tttaacatta ccatagctta cattagcact ataagaaaaa ctatcattac taatgccatt
    10921 ataaactcct tctatactaa agcttatcgt atcagagctt ttatctatag tcatgatatt
    10981 taatcttgaa ttactaagct ttttatgata ataacttgaa gttaaataaa aagaattata
    11041 agtcgtaatc cacaaaggat attttaaatc tatacctaga ttttcagaag ttcctataaa
    11101 gtttgcattt ttataagctc ctcctaaagc atagtttctt ttagaataac ttggagtgat
    11161 ttttaaattc cctaagaaag tagtatagct tatactatag ttagtttgtg cttcatcgct
    11221 tctttgcaaa taagcattaa gactatctcc ttgatgagct atgttattaa aactcatact
    11281 ggcaccatcc ctatatctgc ctgattcttt tataccgtaa ttatccccat aaaacaatac
    11341 agaaacaaag ctatcactag gggtagtttc tatcactaca tctgttttac ctggattatc
    11401 tcctgctttt aaagaagcaa gggtttgtat gccatacatt tcattgactt tataaactgc
    11461 atcttctact aatttagtag tgatgatttc acctttgtga ttaggtaatt tactttctat
    11521 agcataatct cttacactag aattgttttg aaccacatat ttacctaaaa cacctaaggt
    11581 gatattgatt tgaatttgat cttttagttc ttgttgtggg atataagctg tagcagcagg
    11641 ataaccacta acttgaacat aataagaaat gatattggct atatcttgta agtcttgaac
    11701 tgaaatactt tcttttttgt aatcgtttaa ggcttcttgt aaaacttgct catctaaacc
    11761 tagatcttta aagtttatgt ttttattggt aatatgaaag ctaaagctaa ctttataaat
    11821 tgattcttct ttagaagtat tttttaaaga aggagtgttt gaatttgggg ttttagtttt
    11881 taaagtatta tcattagaca agttaggttg atttttttga gtgtttttct ttgtgttgat
    11941 ggtttttgaa ttattatcat cactagtatt agaatgatct atgataatca ctccatcttt
    12001 tacttttaaa gtgttgttgt agttttttga gttagcatct tctttataag gagattgttc
    12061 taacatttgt atggtttttt attatcttta gtatcactag cataaaggct taagatagct
    12121 aaactagata gtaagataat gcgttttatt taaattttcc ttagtgtttg tttgattttt
    12181 aatctttaaa ctttgtttgt tttttaattt tttaacaaga tccaaaaggc ttttaacctt
    12241 ttggatttta atcatcttga gcaaggattt cctgctttaa aattatccga tactatacaa
    12301 cattaccact ttcttgagta ctggcttcat ctatacttgc ttgtttatca tcttcattga
    12361 tatttggatc ttcatctgta gtttgtataa aaagctgtag caatgccagg ttcttgttgt
    12421 cctatggtat catttgggtt attattagaa ccgttgttgt tgctattgtt aatatcacct
    12481 gaatcggttc catcgtttct gttgttggag ttgttagatc ctaaatttat aatggatact
    12541 ggcttatagt ttgcactata ttttcattga ctgtaagatg actagttcca tttatgctcg
    12601 cacttgctaa ggttttatta gaattttcta aactagaatt agtactcgct gtagcgattt
    12661 gaagagctat tgtagcttgt tgtaaatcac tagaaacttt atctacagct tgttttaaac
    12721 ctgcaataac tttatcgcca ttattacctg ttataccact tagagctgta ttgtaagctt
    12781 taactgcttc attataagca tttgcagcag tatcgtaagt tttttgagcg ttttcttgcc
    12841 cttcggtcat tttaggaatt ttgagaaaga atttcctttg ttttaataat ggcttgttta
    12901 gcttttccta gatcaccata agaatttccc aatacttcct ttaaagcgtt tgcaaatgtt
    12961 gcattattgc tatcttgagt ttgtccatat aaagcagtaa taaaatccat actttgatta
    13021 atgcttgtta gttcatcagc tgttaatatt tttccatctt tataaaattt acttaagtcg
    13081 ctaatatcaa cactagaatt aaatttcaag tcattaaata tagaatttaa aacttcattt
    13141 gagatgttat ctttagcaat aagatcgcta gtttctttat agcctattgt gtctgttgga
    13201 tctcctcctg gtccagttaa gcctttatta gatcttatac tcaatattac agagtcttct
    13261 tttttattgt atttgatgca ggaccacgaa tgacaaatgt atcattacta tagacattaa
    13321 gatagacggt attggattgt tcttttttat ttgtaaaaat gaatttacca taatcagtgc
    13381 caccatattt catatttgaa acttgattgc ctgccatagc aactctttct cctaccgtta
    13441 tagtttctaa atttataaca tttcctgcat tggatttaat tacaggtgat attgttttag
    13501 gatttccttt aaatgctgaa agttttccat cttttgtaaa ctccttcatc tccttatcac
    13561 ctattgatga agcagacaga acaatttttt tccaccttta cccactacta tgccattagg
    13621 attgattaaa aagatattat tgcttccact attgagtgtt ccatctataa tgagagcttt
    13681 tagaaccata gacaatattt aaataatttt ggttagtttt tccttgtcca aaatttacag
    13741 tttcattact tgctatatta aaaccaccac taacacttat acttccactt gttccatgag
    13801 tgaacttacc cccacttggt aaagcatagc tttgtgtaaa aagtaaagaa cctacaacta
    13861 aagacaaaga aagtttattt aactttttca tgacttgctc ctttttgtaa gattaagatt
    13921 taagaatctt ttgtttatat ttataaaaat acaaataaat cattcctatc ttaaaaatag
    13981 gaatgattta ttttatcctt gcataaatgt ttttgtcatc ttgagatatt cttgcttcat
    14041 aagaaagctt ttgtaggttc atattttcta atctatctat agaacttagt ttaaaatctt
    14101 ctttgttttt tgcatttttt caataaagct ttgaagttct tcttgattta aaatattaga
    14161 gttttcatct ataaaacctt gctcacttta taagattaag atttctttat ttttaatata
    14221 ggggtattac tctttgaggg tgtaaagagc taatactccc tagctagaaa tattaatagg
    14281 agcatcgtat gacttcaaaa ggggagttgt gttgatttta ttggatacaa taagataata
    14341 atgctcaaag ttattaataa ttctagcttc aactttagta tttaaaatca gtctattgtt
    14401 tttacttaaa ctgatatctg aaggagctgc agcattagaa gcactataat tatcttcata
    14461 atgcaccaac gctcctgcta atatatctat gaaagtgttt ttaaatatat ttaaattccc
    14521 acctatatat aaggtattat tataagattt agcttcactt aaacctgtaa tggctgaagg
    14581 agctataaaa atagaattgt tatttttgta ctcatcaaga ttaagattgt ttatgattaa
    14641 ggtattatca tgggcattgt ttgaaagtcc agctataata cttaaaattc cttctctttt
    14701 atctgaagct acaccaaata aagtatcatt gataatgatt ttattataag cagcttcatt
    14761 ataagccata atcaaataag cattatcagc tgcattagaa gaatagtttt ttatatctat
    14821 agtattatga ttggctttat ctaaagctct tatgatgatt ttagaacctt tatctatatt
    14881 acttacatcg gtaatgcttt gaacattgtt ataatttata gtattataag aggcttcttt
    14941 agcttctgtt aatacagtta aatttctaaa agaagcaaag tctttaatca ctacttcatt
    15001 gttattagca ctactaggat aaaagtcttg gttattaaga atgtttttct tagctgtata
    15061 aatgtataca ggtaaggttg acatagaatt attaatataa actttattat aatccgcact
    15121 gccttctaag gttctagcag ctacaatatt taaagcatct ttatagcttt gagaaagatc
    15181 ggttgtggta agatcgtttt taatgttaat ggtattatga ttagctcctt tagttgcaaa
    15241 gccaccataa aaagaatgtt ggttataacc taagaagtta ttagcgattt ctaaaggatg
    15301 ttttaattct atgtttaagg tattataatt tgcttctcca ttattagaag ctcctgcata
    15361 gaagttaaac aaagcttgag caaaaatgtt ctcattgttt ttatcttttt ttaggttttt
    15421 aatatctttt aaattgatag tattatctaa ggcttgtcct tgttcggttt ttccacccca
    15481 aaaatcagca aataaaacag aattataagc taagggttgt ttatcatggt tcatatacat
    15541 atcaagatta aaaccatcta tgtctaaaag gtttttactg gcttgaaagt ttttatctgt
    15601 tccactatct atataacctg cgctaatatg agcagcagct aaactagcat aagctttgct
    15661 tggaccatgg ataatcatat tagcatcttt gataaagatt ttattgtttt ttacattacc
    15721 ttgataagct aaaccaccta caaggtgagt gattctttca tcaaaggtat tattaccatt
    15781 tttatctttt ttaggtaagg aagtaaaaaa ctctacactg ctacctgctt ctatatttaa
    15841 actattattt gtagaatctc cataagtggc tatagctccg attaaataag gagcaccatt
    15901 taaggctaaa tcataagtgt tctcaactcc catactaata tgggcatctt tttgaagtat
    15961 ggtttggtta tagcttgcat taccataatg agtaaaggta gaactcatta agaaattcat
    16021 gcgttgattg cttttagaat tactagggtt ttttatatga gtatctttag gtttaagata
    16081 aaaaactgaa ctaagttctc cttgttctaa tataagttta ttataacttg catcagcatg
    16141 atcggttttt gctgtgatta aaaaaggaag cactctaact gtttttatac tatgaccggc
    16201 tgtattaaca ccatgccttg ctttaaaaga aagaacttca tcttctctca tatcaggagt
    16261 aagtaaataa tgtttaaaat ttaaatcgtt tatatttgta atatttggtt taggattgtt
    16321 atatattaaa gtaatattgt taatatattg tt
//
LOCUS       DAPIWQ010000021        16282 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.021, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000021 DAPIWQ010000000
VERSION     DAPIWQ010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16282)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16282)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16282
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.021"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..795
                     /locus_tag="RJ267_000497"
     CDS             <1..795
                     /locus_tag="RJ267_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HDV7388379.1"
                     /translation="NELSIDDETIELIISDYTRESGVRNLRRKVAELCRKSAKKLLLE
                     NIKKVIINTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWTSVGGDVLKVEAVKIKGK
                     GELTLTGSLGDVMKESARIAFSMIKVLIDEGKIKIPKKIIIDPKVNVYDSYNIHIHVP
                     DGATPKDGPSAGITISTAIASIFSDKKVKADVAMTGEIDLKGKVLPIGGLKEKLIAAY
                     KADIKTALIPRKNYERDLKDIPSEVRDNMEIIAVDTFSDVLEYTLI"
     gene            complement(856..1116)
                     /gene="rpsR"
                     /locus_tag="RJ267_000498"
     CDS             complement(856..1116)
                     /gene="rpsR"
                     /locus_tag="RJ267_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HDV7388380.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVINNPFEGL"
     gene            complement(1127..1678)
                     /locus_tag="RJ267_000499"
     CDS             complement(1127..1678)
                     /locus_tag="RJ267_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDV7388381.1"
                     /translation="MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKR
                     EETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENME
                     MLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPTPQRNQNP
                     QHEEKLKEIDIDAYDSDDTNLPF"
     gene            complement(1687..2064)
                     /locus_tag="RJ267_000500"
     CDS             complement(1687..2064)
                     /locus_tag="RJ267_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HDV7388382.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLIKNGAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
     gene            2293..2730
                     /locus_tag="RJ267_000501"
     CDS             2293..2730
                     /locus_tag="RJ267_000501"
                     /inference="COORDINATES: protein motif:HMM:NF015581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HDV7388383.1"
                     /translation="MKKILVLLFMCFSSLFANDDFIYEKSKYNFNELIKRVEQELKDR
                     NLTIFAKFNHYQNALDVNLTLKSNTVIVFGNPIVGTYLMQENPMIGIELPLKILIWQD
                     QNNETFIGYVSLKSKIQKYHIKNTVLVDKIDSLMKDIINISKK"
     gene            2745..4100
                     /locus_tag="RJ267_000502"
     CDS             2745..4100
                     /locus_tag="RJ267_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HDV7388384.1"
                     /translation="MKHYEVIIIGFGKGGKTLAAKLAMLGKKVALIEEDENMYGGTCI
                     NVGCIPSKSLVKNSLCADKNANWEIKQNFYYNAILEEKQLSAMLRQKNYDKLNALENI
                     TLYLGKASFINEKTLLIQGEKEVQISADRIYINTGSIPIIPDIKGLDQSKNVLTSKEL
                     MAQENLPKHLVIIGGGYIALEFACIYANFGSKVTLLQRNDTFLGKEDKDFADLIFQNL
                     ENKQIDIRLGVQFKEIKDFDQKSIVFFTQDHQDFEIECDMILLATGRKANTLGLSCDK
                     AGIQLDKRGFIIVDDTLKTNKDSIYALGDVNGGLQFTYVSLDDYRIAYAPFRQQNYTK
                     SKRKVIPYSVFIDPPFSRVGLNEKESIDAGYRIKVVKLPVVAIPKAQVLKKTYGLLKA
                     IINEENDEILGAMLFCEESHEMINIVKLAMDTNLKYQVLRDQIYTHPTMSESFNDLFD
                     I"
     gene            complement(4078..4950)
                     /locus_tag="RJ267_000503"
     CDS             complement(4078..4950)
                     /locus_tag="RJ267_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
                     /protein_id="HDV7388385.1"
                     /translation="MNKKFSYPIPNFTDRRKSIIFWRYLRFQARKILYFPQVRLLEKT
                     LNEEKNKHLKDFFSQRPYACYNAIRRFCDKSFKANERVKTLIYDVDKGLTCFKFLPEE
                     QMIFSFDEDFELFLGYNHNVYEEGFWAFSLKFKKYTISQCNFCFTLENNLLLSCIQGY
                     KYKDFNILEINKILTKKCHGLRPVALLIECSKMLCEILKLQATLGVHEKNQIRSQKGK
                     EKGYFVDYQKIWLENGGELIKIDKHKYYKLHHSQKNLEEIPSQKRSMYKKRFTMLEGI
                     RQNLKNLFRYQINH"
     gene            complement(4943..6049)
                     /gene="rseP"
                     /locus_tag="RJ267_000504"
     CDS             complement(4943..6049)
                     /gene="rseP"
                     /locus_tag="RJ267_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HDV7388386.1"
                     /translation="MRSLLFLIVILILGIKFYSIEFLATVLVISFLIFFHELGHFLAA
                     RSLGVKVEVFSIGFGKSLIEREFKGTNYRLSTLPLGGYVKLKGQDDMRPGFENLDKDS
                     YSILSPLKKIYILFAGPFFNLILAFFLYIIIGNLGLNKLAPQIGSIAPNSAAQDIGLQ
                     KNDTILEINGIRIQSFDEISKHLSLEPLKILIDREGKNLEFILTPKIGQGYNDFGQIV
                     EKPQLGVSPNGTSTLVKHQGLESFKYAAQESFQASTLIIKGIVKLISGEVEAKNLGGI
                     ITMTEITSKAAQNSFTLLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKI
                     PQRAFEYLSYAGMAILLSLMLFATYNDISRIAGE"
     gene            complement(6046..6582)
                     /gene="pgsA"
                     /locus_tag="RJ267_000505"
     CDS             complement(6046..6582)
                     /gene="pgsA"
                     /locus_tag="RJ267_000505"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HDV7388387.1"
                     /translation="MNLPNILAIFRMVLAPLLFFLLIHHFENIHQSWINYFAALTFSL
                     AALSDFFDGYIARTWKQTTKLGGILDPLADKMLVLAAFLGLLLTGKANEWVIYIILVR
                     EFFITGFRVVMISENLNVNASFAGKLKTAFQMTAIGFLIMEWIGGEILLYIALILTLY
                     SGFEYIYTYIKAQKKGEK"
     gene            complement(6707..7312)
                     /locus_tag="RJ267_000506"
     CDS             complement(6707..7312)
                     /locus_tag="RJ267_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDV7388388.1"
                     /translation="MKKELEIFSTRYSCRNFKNEKLKKEDLNSILEIARLSPSSLGLE
                     PWKFIVVQDEKRKEELSKICNQQKHVKDCAALIIIISRLDFLDYFEEKLRKRDMSETE
                     MQKRLDTYMPFLKSLNQEQKISYAREQAHIALASILYSANALNIASCTIGGFDKEKLD
                     SYLSLDIQKERSSLVVALGYCNDKKNPQKNRFSFDEVVKFI"
     gene            complement(7312..7932)
                     /locus_tag="RJ267_000507"
     CDS             complement(7312..7932)
                     /locus_tag="RJ267_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDV7388389.1"
                     /translation="MNFKELISKRRACKLFNDKKINEKDLHFILESGVLAPSSHGFEP
                     WKFVVLEQKEHNLKLSTLCYNQQNVASASHNIIFLARKDLQSKDEFAQKQVRRFSGSS
                     EENFQKILEIYTHKTNAMNDNELYHYAQLQCYLAMMQMSLAAMSLGIDSCMIGGFEKA
                     KVDNFLNLTYPFETAVILSLGYKAHEPKYSTQRLNFNEVVEFYKEK"
     gene            complement(7996..8421)
                     /locus_tag="RJ267_000508"
     CDS             complement(7996..8421)
                     /locus_tag="RJ267_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7388390.1"
                     /translation="MKEIKLKEDLEKIYPLIKQLRNNLSLKDFLDKIQLATQTQHYKL
                     FAYENEGSYKAACGVMPFNVLYHNHCLYICDFVVDEALRGKGIGQAFLKKIQIWAKDQ
                     GYEELELSSSFFRTQAHEFYIQKMGFEKSGFVFKKNIKL"
     gene            complement(8433..9521)
                     /locus_tag="RJ267_000509"
     CDS             complement(8433..9521)
                     /locus_tag="RJ267_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HDV7388391.1"
                     /translation="MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQSKTDK
                     DLPFLLENLLNQYDFITLFTSPLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNS
                     FVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
                     NIKLTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKL
                     KISFAESCTGGLCASTLTKISGVSEIFEGSIVSYSNRIKHEWLGISESILENNGEYSE
                     RCVYFMLKGIFKTANPDFALAISGVVGEKDEGKIKSGTIYIGAMFRDGTFIQETLYLD
                     GDREFMQEQAVLATFCLLLKLKPEIFEI"
     gene            9620..12373
                     /gene="ileS"
                     /locus_tag="RJ267_000510"
     CDS             9620..12373
                     /gene="ileS"
                     /locus_tag="RJ267_000510"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HDV7388392.1"
                     /translation="MDYKETLLLPSTTFAMRANLAELEPQRFKKWFEQNYAYETMKEN
                     RKNAKKSFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLP
                     IEQQVEVKLGEKKKSLSKKEIREFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD
                     VKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLIFASALLKSMVEK
                     GLTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEHVLMDGGSGLVHTAPGHGEDDY
                     YACLKYGIEVLMPVDDGGCYDETLRAKELLPSHLLEEFIGLHIFKANEKILELLGAKL
                     LHSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLQGKTLRECAKEQLLKTTFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDDELFDFVAAIFEKHGA
                     DAWWEFEIKDLIPTNSKYNAENLEKVYDILDVWFDSGSTFNAVLNSGLYDAGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINESAPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLKV
                     KEFSFIDKWILSRATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLY
                     CDSENAQRRKSAQVAMALIAKELLNLLAPNLSYSVDEALEHANVLIKGDAKDVFDLSL
                     TQDFDYDFGIDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADW
                     FMVSQISNENEEILAEFEVENEKFKITKASLCKCPRCWKLQSKDEETPCLRCEEVLKG
                     IQC"
     gene            12367..12477
                     /locus_tag="RJ267_000511"
     CDS             12367..12477
                     /locus_tag="RJ267_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388393.1"
                     /translation="MLENPIPNSIIITTIAVVLAFSALAVFLIKKTKENK"
     gene            12474..13835
                     /gene="gatA"
                     /locus_tag="RJ267_000512"
     CDS             12474..13835
                     /gene="gatA"
                     /locus_tag="RJ267_000512"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HDV7388394.1"
                     /translation="MITLKEALKYSKEELENLKKELNEKAKKEKKIGAYIEQFLDKDL
                     SVSGEGVPVAIKDNISVKGWELTSASKILQGYIAPYDASVIVNLKANGFSPFGRCNMD
                     EFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     NIEFIKTAPNLNANKKLKIAVIENYVNDADSEVKNALLKTIDMLKANGHEIVYKNLLD
                     SKFDIAAYYIIATAEASANLSRYDGVRYGKRSENIQNLKEMYVNTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKAKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVAKDKEGLNISAQLICKAYDEQTLLDGALSLEQM
                     IKH"
     gene            13845..15302
                     /gene="guaB"
                     /locus_tag="RJ267_000513"
     CDS             13845..15302
                     /gene="guaB"
                     /locus_tag="RJ267_000513"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HDV7388395.1"
                     /translation="MKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVSPK
                     ASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDLRFESDFSNLVENVMTKMPLITA
                     PKGCTLDDAEKIFSTNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPDANKDNFGRLRV
                     GAAIGVGQMDRVNALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIAT
                     AAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIAD
                     GGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     KRAEFVEITTAGLKESHVHDVTITHEAPNYKVNHQ"
     gene            15299..15472
                     /gene="xseB"
                     /locus_tag="RJ267_000514"
     CDS             15299..15472
                     /gene="xseB"
                     /locus_tag="RJ267_000514"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HDV7388396.1"
                     /translation="MSFEENLKHANESLEKLNNQELALDESVKIYKEGLESIKKARLE
                     LEKAKLEVEQIDE"
     gene            15465..16241
                     /locus_tag="RJ267_000515"
     CDS             15465..16241
                     /locus_tag="RJ267_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HDV7388397.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDNGVNLVVLGEYVINSF
                     FTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVEAKSYKKLCLKVTPNGV
                     KSYEQQILMPYEHWNEEKFFSNKTPSELKIFTFNYEKLKCALLFGFETHFDIFWQQIM
                     AKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLFI
                     NAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFDKILKNF"
BASE COUNT         5725 a         2205 c         2819 g         5533 t
ORIGIN      
        1 aatgaattat ctattgatga tgaaactata gagttaatca ttagtgatta tactcgtgaa
       61 tcaggagtta gaaatttgcg tcgcaaagtg gcagagttgt gtcgtaagag tgctaaaaaa
      121 ctacttttag aaaatattaa aaaagtcatt attaatacaa aaaatttgaa tgaattttta
      181 gataaaaaag tttttgaaat agaaaaaaat aatggagaaa atcaagtagg tcaggttaat
      241 ggtttggctt ggacaagtgt aggtggagat gttttaaaag tagaggctgt aaaaattaaa
      301 ggtaaaggag aattaacgct cacgggaagt ttgggtgatg taatgaaaga atcagctaga
      361 attgctttta gcatgataaa agttttaatc gatgaaggaa aaataaaaat acctaaaaaa
      421 ataattatcg atcctaaagt taatgtttat gatagttata atattcatat ccatgtgcca
      481 gatggagcta ctccaaaaga tggtccaagt gcgggcatta cgataagcac agctattgct
      541 tctattttta gtgataaaaa ggttaaagca gatgttgcaa tgacaggtga aatagattta
      601 aaaggaaaag ttttaccaat aggcggatta aaagaaaaat taattgcagc ttataaagca
      661 gatataaaaa cagctttaat cccaagaaaa aattacgaaa gggacttaaa agatattcct
      721 agtgaggtta gagacaatat ggaaatcatt gctgttgata cttttagtga tgtcttagaa
      781 tatactttga tttaatttta ttttgagaat aaatgtataa gaaagcaaac tttttacaag
      841 tttgctttta aaagattata gtccttcaaa aggattattg attacttctt ttctatccac
      901 tatataaggg ataagagcta catgtcttgc acgtttgatt gcaacttcta ccatttcttg
      961 gtattttttg cttgtacctg ttaaacggcg tggcatgatt ttaaatcttt cagataaagc
     1021 atgttttaac attgctgtat ctttataatc aataaattca acttttgctt cagtgtattt
     1081 gcaatatttg cgagagtatt ttcttttttc tgccatagtt tatcctttaa aatggtaaat
     1141 tagtatcatc gctatcataa gcatcgatat caatttcttt taatttttct tcgtgttgtg
     1201 ggttttggtt tctttgtgga gtagggtttg tttttgcttt attaaaattt tgattttcac
     1261 tcatataagg atcatagctt tgattttcat agtttccact ataattgttg tttgaaaagc
     1321 tattattgcc aaaatttccg ccttgttgtg gagcattgga attgccaagc atttccatat
     1381 tttcaacttg aatgctatgt ttagagcgat tttgtccatt ttgatcactc cattgttcaa
     1441 atctcaaacg tccttctatg agtacttttg aaccttttgt aaggtattgg tttgcaactt
     1501 ctgcggtgcg accataaaaa cttatatcaa taaagcaagt ttcctctctt ttttctccat
     1561 ttgtggtaaa tcttcttgtt actgcgatag cagaagctcc aatagcacta ccgctttgtg
     1621 cataacgcat ttctatatcg cgtgtaagat ttccaaccaa aacaactttg ttaaacatct
     1681 ttttccttat tgaatttcag gagcatctaa aggtttgatt tcttttttag attgcttaat
     1741 cccgtggctt agtttttccc aagctgcaat ttcttttttg ttttcatatt ttacgattaa
     1801 aaatcttatt acttcttcag tgattcttaa caccctttca agctcagcga tcaagtttgt
     1861 aggagctttg aaataaatca caaaataagt tcctctttca tattttttga ttttatacgc
     1921 taattttcta gtgcccattg gaacaacagt ttcaatttct gcaccatttt tgattaggac
     1981 ttctttaacg aattccaact ttgcattcac ttcctcttcg gtaagcgttg gttttaagat
     2041 aaataaaacc tcataatgtt tcatcttttc tccttatgga tataaagccc atttttatga
     2101 gcaaggattt tgcattaaag caagagcaaa ttatactata atatacttaa tttatacttc
     2161 aatgaagtta atatgtaaat tatcattgcc attatcaaac aattaataag caatggattt
     2221 gttttgattt actttcgact gttataatgc aatgtttttt aaaatacgac cttaattgag
     2281 caaggattaa aattgaaaaa aatattggtt ttgttgttta tgtgttttag cagtttattt
     2341 gcaaatgatg attttattta tgaaaaaagt aaatataatt ttaatgagct gataaaaaga
     2401 gttgagcaag agcttaaaga tagaaattta acgatttttg caaaatttaa tcactatcaa
     2461 aatgcattag atgttaattt gaccttaaaa tcaaatacag ttatagtgtt tggtaatcct
     2521 attgtaggaa cttatttgat gcaagaaaat ccaatgatag gtattgaatt acctttaaaa
     2581 attttaatct ggcaagatca aaataatgaa acttttatag gttatgtcag tttaaaatca
     2641 aaaatacaaa aatatcatat taaaaatact gttttagtag ataaaataga ttctttaatg
     2701 aaagatatca tcaatataag caaaaaataa attaaggaag agaaatgaag cattatgaag
     2761 ttattattat tggctttggt aagggtggaa aaactttagc ggcaaaactt gcaatgctag
     2821 gaaaaaaagt tgctcttata gaagaagatg aaaatatgta cggagggact tgcattaatg
     2881 ttggttgtat tccttctaag tctttggtaa aaaactctct ttgtgctgat aaaaatgcaa
     2941 attgggaaat aaaacagaat ttttattaca atgctatttt agaagaaaaa caattaagtg
     3001 caatgttaag acaaaaaaat tatgataagt taaatgcttt agaaaatatt actctatatc
     3061 ttggaaaagc ttcttttatt aatgaaaaaa ctttgttaat acagggcgaa aaagaagttc
     3121 aaattagtgc cgatagaatt tatattaata caggctcgat tcctattata ccagatataa
     3181 aaggactaga tcaaagtaaa aatgtattaa caagcaaaga attaatggca caagaaaatt
     3241 tacctaagca tcttgttatc ataggtggag gttatattgc tttagaattt gcttgtattt
     3301 atgctaattt tggttctaag gtaaccttat tgcaaaggaa cgatactttt ttaggtaaag
     3361 aagataaaga tttcgcagat ttaatttttc aaaatttaga aaataaacag attgatatta
     3421 gattaggagt tcaatttaaa gaaattaaag attttgatca aaaaagtata gtgtttttta
     3481 ctcaagatca ccaagatttc gaaattgaat gtgatatgat cttattagca acgggaagaa
     3541 aggcaaatac tcttggatta agttgcgata aagccggcat tcaactcgat aaaagaggtt
     3601 ttattattgt tgatgatact ttaaaaacaa ataaagattc tatttatgct ctaggtgatg
     3661 taaatggagg tttacaattt acttatgttt ctttagatga ttatagaata gcttatgctc
     3721 catttaggca acaaaattat acaaaatcta aaagaaaggt tattccttat agtgtcttta
     3781 tcgatcctcc tttttcaaga gttggattaa atgaaaaaga atcaattgat gcaggttata
     3841 gaattaaagt ggtaaaattg cctgttgtag caatccctaa ggcacaagtt cttaaaaaaa
     3901 cttatggttt actaaaagca atcataaatg aagaaaatga cgaaatttta ggagcaatgc
     3961 ttttttgtga agaatctcat gagatgatta atattgttaa acttgctatg gatactaatt
     4021 taaaatatca agttttaaga gatcaaattt atactcaccc aacaatgagt gagtctttta
     4081 atgatttatt tgatatctaa ataaattttt tagattttgc ctaatacctt caagcatagt
     4141 gaaacgtttt ttatacatgg agcgtttttg cgaagggatt tcttctaggt ttttttgcga
     4201 gtggtggagc ttgtagtatt tgtgtttatc gatttttatt aattctccac cattttctag
     4261 ccaaattttt tgataatcta caaaatagcc tttttctttt cctttttgag aacggatttg
     4321 atttttttca tgtacaccta aagtagcttg aagttttaaa atttcacaaa gcatcttaga
     4381 gcattctata agtaaagcaa cagggcgcaa accatgacat tttttagtta aaattttatt
     4441 aatttctaaa atattaaaat ctttgtattt atatccttgt atgcaagaaa gtagaagatt
     4501 attttctaaa gtaaagcaaa aattacattg tgaaatagtg tattttttaa attttaaaga
     4561 aaaagcccaa aaaccttctt cgtaaacatt atggttatat cctaaaaaaa gctcaaaatc
     4621 ttcatcaaaa gaaaaaatca tttgttcttc gggaagaaat ttaaaacaag taagtccctt
     4681 atcaacatca taaataagtg ttttaacgcg ttcatttgct ttaaaacttt tatcgcaaaa
     4741 tcttcttata gcattgtagc aagcataggg tctttgagag aaaaagtctt ttaaatgttt
     4801 atttttttct tcattaagcg ttttttctag aagccttact tgaggaaaat atagaatttt
     4861 tcttgcttga aaacgcaaat agcgccaaaa gatgatactt tttcttctat cagtaaaatt
     4921 tggaataggg taggaaaatt ttttattcac ctgcaatcct tgatatatca ttataagttg
     4981 caaagagcat taagcttaaa agtattgcca tgcctgcgta acttaagtat tcaaaagcac
     5041 gctgtggaat cttgcgtcta aaaatcattt cataaagatt aaaaagtata tgtcctccat
     5101 caagcatagg aataggtaaa agatttaaaa tacctaaatt tatagaaatt aaagcagtga
     5161 taaataaaag caaagtaaag ctattttgtg cagcctttga ggtaatttca gtcatggtga
     5221 taataccgcc taaatttttt gcttcaactt caccacttat gagttttaca atacccttga
     5281 tgataagtgt ggaagcttga aaactttctt gtgcggcata tttaaaactt tctaaacctt
     5341 ggtgttttac aagagtgctt gtcccatttg gactgactcc aagttgaggt ttttcaacga
     5401 tttgtccaaa gtcattatat ccttgtccta tttttggagt taaaataaat tctaaatttt
     5461 ttccttctct atcgattaat attttcaaag gctctaaact taaatgcttt gaaatttcat
     5521 caaagctttg aattcttata ccgttaattt ctaagatagt atcatttttt tgaagtccta
     5581 tgtcttgtgc agcagagttt ggcgctatgc ttcctatttg cggagcaagt ttgtttagac
     5641 ctaaatttcc tatgataata taaagaaaaa aagctaaaat tagattaaaa aatggtccag
     5701 caaaaagaat ataaatcttt tttaaaggac ttaaaatgct atagctatct ttgtctagat
     5761 tttcaaaacc aggacgcata tcatcttgtc ctttaagttt aacatatcct ccaagtggta
     5821 aagtgcttaa gcgatagttt gtgcctttaa attcacgctc tataagactt tttccaaatc
     5881 ctatactaaa aacttcaact tttacaccca aagatcttgc agccaaaaaa tgtcctaatt
     5941 cgtgaaagaa aattaaaaat gagatgacta aaacagttgc taaaaattca atagaataaa
     6001 atttaattcc caaaatcaaa ataacaatta aaaataataa agatctcatt tttctccttt
     6061 tttttgagct tttatataag tatagatgta ttcaaatcca gaataaagag ttaaaatcaa
     6121 agctatgtaa agtagaattt caccgcctat ccactccatg attaaaaatc ctatcgcagt
     6181 catttgaaaa gcggttttaa gtttgcctgc aaaagaagca ttgacattta aattttcgct
     6241 aatcattaca actctaaaac ctgtgataaa aaattccctt actaatataa tataaattac
     6301 ccattcatta gcttttcctg taagtaaaag ccctaaaaaa gctgctaaaa caagcatttt
     6361 atcggctaat ggatctaaga ttccaccaag ttttgtagtt tgtttccaag ttcttgcgat
     6421 gtatccatca aaaaaatcac ttaaagctgc taatgaaaaa gttaaagcag caaaatagtt
     6481 aatccaactt tgatgaatat tttcaaaatg atgaattaat aaaaaaaata gcaaaggcgc
     6541 taaaaccatt ctaaaaatcg ccaagatatt gggtaaattc ataacaagcc ttgtgaaatt
     6601 aaatgtaaaa ttataatcaa aattgtataa aatttaagca aagacttagt aaaaatacaa
     6661 aaaagaatca gtttattttt atttaaattt tgcttaaaag caaaatttaa ataaatttta
     6721 caacttcatc aaaactaaaa cgattttttt gaggattttt tttatcgttg caatatccta
     6781 aagccaccac caaacttgat ctttcttttt gaatatcaag tgataaataa gaatcaagct
     6841 tttctttatc aaaaccacct atagtgcagc ttgctatatt taaagcatta gcactgtaaa
     6901 gtatgctagc tagagctata tgagcttgtt ctcttgcata agatattttt tgttcttgat
     6961 ttagagattt taaaaaaggc atataagtat ctaagcgttt ttgcatttct gtttcactca
     7021 tatctctttt tctaagtttt tcttcaaaat aatccaaaaa atcaagtctt gaaatgatta
     7081 taattaatgc agcacaatct tttacatgtt tttgttgatt gcaaatttta gaaagttctt
     7141 cttttctttt ctcatcttgc actactataa atttccaagg ttccagtccc aaggagcttg
     7201 ggcttaatct tgctatttct aaaatagaat ttaaatcctc ttttttgagt ttttcatttt
     7261 taaaatttct acaagaatat cttgtgctaa aaatttcaag ttcttttttc attatttttc
     7321 cttgtaaaat tcgacgactt cattaaaatt taagcgttga gtagaatatt ttggttcatg
     7381 ggctttatat cctaaggata aaattacagc agtttcaaaa ggataagtta aattaagaaa
     7441 attatcaact ttagcttttt caaagccacc tatcatacaa gaatcaatac ctaagctcat
     7501 tgcagctagc gacatttgca tcatagcaag atagcattga agttgtgcgt aatgatagag
     7561 ttcattatca ttcattgcat tggttttatg ggtgtaaatt tctaaaattt tttgaaaatt
     7621 ttcttcgcta gaacctgaga aacgacgcac ttgtttttgt gcaaattcat ctttgctttg
     7681 aagatctttt cttgctagaa aaatgatatt atgactcgca cttgctacat tttgttgatt
     7741 gtaacatagg gttgagagtt taagattgtg ttctttttgt tctaatacta caaatttcca
     7801 aggctcaaat ccatgtgagc ttggggctaa gactccactt tctaagataa aatgcaaatc
     7861 cttttcattg atttttttat cattaaaaag tttacaagct ctgcgttttg aaattagttc
     7921 tttaaaattc attttattcc ttaaaatcaa aaataataat attaattata aaatgcaaag
     7981 cttaatcaaa aaatattata gtttgatatt tttcttaaaa acaaaaccgg atttttcaaa
     8041 acccattttt tggatataaa attcatgagc ttgtgttcta aaaaaacttg aacttagttc
     8101 taattcttca tatccttgat cttttgccca aatttggatt tttttcaaaa aagcttgacc
     8161 tatacctttt cctcttaaag cttcatctac gacaaaatca caaatataaa gacaatgatt
     8221 atgataaagt acattaaagg gcatgactcc acaagctgct ttgtagcttc cctcattttc
     8281 ataggcaaaa agtttataat gttgagtttg tgtagcaagt tggattttgt ctaaaaaatc
     8341 tttcaaagat aggttatttc ttaattgttt tatcaaggga taaatttttt ccaagtcttc
     8401 ttttagctta atttctttca tttttaaatc ccttaaattt caaaaatctc aggttttaat
     8461 tttaaaagta ggcaaaaagt tgccaaaaca gcttgttctt gcataaattc acgatctcca
     8521 tctaaataaa gcgtttcttg gataaaagtt ccatctctaa acattgcacc tatataaata
     8581 gtgcctgatt ttatttttcc ctcatctttt tcgccaacta ctccgctaat agctaaggca
     8641 aaatcaggat tagctgtttt aaaaatacct tttagcataa aataaacaca acgttcactg
     8701 tattcgccat tattttctaa gatgctttcg ctaattccaa gccattcgtg tttgatgcgg
     8761 ttggaataac ttacaataga tccttcaaaa atttcactta cacctgaaat tttggttaag
     8821 gtgcttgcac aaagtccgcc tgtgcaactt tcagcaaaag aaatttttaa ttttttttct
     8881 aaaagtttag agcttataaa atgtatagga tctttaccta aaaacacctt ttgtccaaaa
     8941 agatttttta cgctatttaa aaaaccatca agttttccaa aattagcgca agtggcctta
     9001 ataagcacaa gattatctaa aagcttggtt aattttatat ttatctcata agattttgtt
     9061 agggtttgca gtagtaatat agcgctttca tcatccatgc caaaaatgca aaaatatgca
     9121 aaatttaatt ttatatgccc aagaagattg ggtaattttt cgcttggatt tattttaacg
     9181 acattgattt ttgaatttga aaaattacac acaaagctat ttttactaaa ttctgcttta
     9241 tctggaacca aggtatcatc ttttaagata agattatcat catttaaagt tgctaaaatt
     9301 ttagcaacag tcgcataatg caaagggctt gtaaataaag tgataaaatc atactgattt
     9361 aagaggtttt caagcaaaaa gggtaaatct ttatcggttt tactttgtat gcgaatttcg
     9421 ttgatttctt taaatttttc ttcataagtt ctataaatat aatttttgaa tttttcgttt
     9481 atagtaagct catctcctat aagataaagc aaatgtttca taaattttcc tttttttctt
     9541 ataattatag ccaaaaacaa agtagaaatt aaagctaatt tgagtagaat ttaagattat
     9601 taaaaattag gtggaaaaaa tggactacaa agaaactcta cttttgccca gcactacttt
     9661 tgctatgcgg gcgaatttag cggaacttga accgcaaaga tttaaaaaat ggtttgagca
     9721 aaattatgct tatgaaacaa tgaaagaaaa tcgcaaaaat gcgaaaaaaa gttttacttt
     9781 acacgatggc cccccttatg ctaacggaca tatccatata ggacatgctt taaataaaat
     9841 tttaaaagaa actattatca aaacacatta ttttaaaggt gagagtgtgc gttttactcc
     9901 agggtgggat tgtcacggtt tgcctataga acaacaagta gaagtaaagc ttggagaaaa
     9961 gaaaaaaagc ttaagtaaaa aagaaattcg tgagttttgc agacaacatg cgagtgaatt
    10021 tgtagatatc caaagagaag aatttaaaaa tttaggcatt attgcggatt gggataagcc
    10081 ttatttaact atgaaatttg agtttgaagc agcgatttat agaactttat gtgagattgc
    10141 taagaaaggc ttactttgtg agcgttctaa acctgttttt tggagttggg cggcaaagtc
    10201 agctttagca gaagctgagg tagaatatca agataaagaa gattattcta tctttgtggc
    10261 ttttgatttg gatgtaaaag cttgcgaaaa attaggtgtt tcaaaagcaa gcgcagtgat
    10321 atggacaact acgccttgga ctttagtggc taatcaagct atagctttaa atcctaatga
    10381 aaattatgtg atcaccaaag aaggtttgat ttttgcaagt gctttactta aaagtatggt
    10441 agaaaaagga cttacaagtg gagaaattca aaaagaatta aacgcaaaag aatttgaaaa
    10501 acttgaagct atcaatcctt taaatggaag aaaatctgtt ttaattatgg gtgagcatgt
    10561 attgatggat ggtggaagtg gacttgtgca tactgcacca ggacatggcg aagatgatta
    10621 ctatgcttgt ttgaaatacg gtattgaagt tttaatgcct gttgatgatg gtggatgtta
    10681 tgatgaaact ttaagagcta aagagctttt gccttctcat ttgcttgaag agtttatagg
    10741 tcttcatatt tttaaggcta atgaaaaaat tttagaactt ttaggcgcaa aactgttaca
    10801 ttcttctaaa tttatacact cttatccgtt ttgctggaga acacataaac ctgtaatcta
    10861 tagagctact aaacaatggt ttattttaat ggatgagcca aaacttcaag gaaaaacctt
    10921 aagagagtgt gcaaaagaac aacttttaaa aacaactttt tatccgcaaa gtggggtaaa
    10981 aagaataggt tctatggtgg aaaatcgccc agattggtgt atttcaagac aaagggactg
    11041 gggaacgcct atagcctttt ttagagataa aaacactaaa gaagtcattt ttgatgatga
    11101 gctttttgac tttgtagcgg ctatttttga aaaacacggc gctgatgcgt ggtgggagtt
    11161 tgaaatcaaa gatttaattc ctacaaattc aaaatacaac gctgaaaatt tagaaaaagt
    11221 atatgatatt ttagatgttt ggtttgatag tggaagtact tttaatgcgg ttttaaatag
    11281 cggactttat gacgcaggag aaaaaagagc aagtatgtat ttagaaggaa gcgatcaaca
    11341 tcggggttgg tttcaaagct ctttgcttgt aggtacagcg atcaatgaaa gtgcacctta
    11401 tgaaagcatt ttaactcatg gttttaccac cgatgaaaaa gggcaaaaaa tgtctaaatc
    11461 taaaggcaac gtgatcgctc ctgaatatgt agcaaaaacc tatggagttg aaattttaag
    11521 actttggata cttttaagtg attattcaag tgatttaaaa atttcagaca atatcttaaa
    11581 acaagtaggc gaacaatacc gcaaaataag aaacactata agatttttac ttgccaatac
    11641 caatgattta aaagatttaa aagttaaaga atttagtttt attgataaat ggatattaag
    11701 ccgtgcaact aaagttttta aagcaagcaa agaggcattt tttgcttatg aatttgctaa
    11761 aggttttagt ttgcttttaa atttcttaag tgcggattta agtgggattt atcttgatat
    11821 cagtaaagat agactttatt gtgatagcga aaatgcccaa agaagaaaat ctgctcaagt
    11881 ggctatggct ttgatagcaa aagagctttt aaatttactt gctccaaatt taagctatag
    11941 tgtagatgag gctttagaac atgctaatgt tttaatcaaa ggcgatgcaa aagatgtatt
    12001 tgatctaagt ttaactcagg attttgatta tgattttggt atagatgata catttttaat
    12061 gagtgctaga gagaaatttt ttgaacagat tgatatactt aaaaaagata aaatcattaa
    12121 atctactttg gaattaaatt taaacatcag ttttaataaa ttcccaaatg aggaattagc
    12181 cgattggttt atggtaagtc aaatcagcaa tgaaaatgaa gaaattttgg ctgaatttga
    12241 agtagagaat gagaaattta aaatcaccaa agcttcactt tgtaaatgcc caagatgttg
    12301 gaaacttcaa agtaaagatg aagaaacacc ttgtttaaga tgtgaagaag ttttaaaagg
    12361 gattcaatgc tagaaaatcc tattccaaat agcattatca tcacaactat agcggtggtt
    12421 ttggctttta gtgctttagc ggtatttttg atcaaaaaaa caaaggaaaa taaatgataa
    12481 ctttaaaaga agctttaaaa tactccaaag aagaacttga aaatttaaaa aaagaactca
    12541 atgaaaaagc aaaaaaagaa aaaaaaatag gtgcttatat cgaacaattt ttagataaag
    12601 acttaagtgt ttcaggtgaa ggtgtgcctg tagctataaa agataatatc agcgtaaagg
    12661 gctgggagct tactagtgcg agtaagattt tacaaggtta tatcgctcct tatgatgcaa
    12721 gtgtgattgt taatttaaaa gctaatggtt tttctccttt tgggcgttgc aatatggatg
    12781 aatttgctat gggaagttca acagcgagtt cttattatgg caaaacttta aatcctttaa
    12841 attttgagcg tgtgccaggt ggttcaagtg gtggaagtgc tgctgcggta gcgggtggct
    12901 tggctttggc aagtttgggt tctgatacag gaggatctgt acgtcagcct gcagcttttt
    12961 gtggttgcgt aggatttaaa ccgagttatg gaagagtgag tcgctatggc ttagcttctt
    13021 attcttcaag tttggatcaa attggggttt taacgcaaaa tgtagaagat gcggcaattt
    13081 tatatgatgc gatcgcagga tatgataaaa tggatagcac gagtgcaaat atcgagttta
    13141 tcaaaaccgc tccaaattta aatgcaaata aaaaattaaa aattgcagtg attgaaaatt
    13201 atgtcaatga tgcagatagt gaagtaaaaa acgcactttt aaaaaccata gatatgttaa
    13261 aagctaatgg acatgagatt gtatataaaa atttgcttga ttctaagttt gatatcgcag
    13321 cgtattatat catcgcaaca gctgaagcaa gtgcaaattt aagtcgttat gatggggtgc
    13381 gttatggcaa gcgttctgaa aatatccaaa atttaaaaga aatgtatgta aatacacgca
    13441 gcgaaggttt tggagaagaa gtaaaaagaa gaattttgtt aggaactttt gttttaagca
    13501 gtggatatta tgatgcgtat tatattaaag cacaaaaagc tagagctttt attaaggcaa
    13561 aatatgaaga aattttgcaa gattgtgatc ttatttttat gcctgtaacg cctacaacgg
    13621 cttttaaatt tgatactcaa aaaagcccta tgcaaactta tttagaagat gtttatacta
    13681 tctctgtaaa tttagcagga cttggaggca ttagtgtgcc tgttgcaaaa gataaagaag
    13741 ggcttaatat atcagcacaa ctgatttgca aagcttatga tgaacaaacc ttattagatg
    13801 gggctttaag tttagaacaa atgattaaac attaaggatg aaagatgaaa attgtaaaaa
    13861 gagctttaac ttttgaagat gtattattgc gtcctgggta ttctgaagtt ttacctaagg
    13921 aagtaaaaat tcacactaaa ttaacaaaaa atatcacttt aaatatgcct ttaatctctg
    13981 cggctatgga tacagttact gaacacaggg ctgctattat gatggcaaga cttggagggc
    14041 ttggagtgat tcataaaaac atggatatag cctcacaggt tagagaagta aaaagagtga
    14101 aaaaaagcga aagcggggtg attatcgatc ctatttttgt aagtcctaag gcaagtgttg
    14161 cggaagcttt agaaattatg gcagagtata gaatttcagg tgttcctgta gtagatgaag
    14221 ataagaaact aataggcata cttaccaatc gtgatttaag atttgagagt gatttttcaa
    14281 atttggttga aaatgttatg actaaaatgc ctttaattac tgctccaaag ggttgtactt
    14341 tagatgatgc ggaaaaaatt ttcagcacca acaaagtaga aaaacttcct atagttgatg
    14401 aacaaggacg cttggaagga cttatcacta taaaagatct taaaaaacgc aaagaatatc
    14461 ctgatgccaa taaagataat tttggcagat tacgcgtggg tgcggctata ggagtagggc
    14521 aaatggatcg tgtgaatgct ttagttgaag caggcgttga tgttgttgtg cttgattctg
    14581 cgcatgggca ttctaagggt attattgata cagtaaaagc aattaaggct aaatatccaa
    14641 atttagatct tatcgcagga aatatcgcca ctgcagctgc agcaaaagca ctttgtgaag
    14701 caggagtaga tgcggttaaa gtaggtattg ggccaggaag tatttgtact acacgtattg
    14761 tttcaggtgt gggcgtgcct caaatttcag ccattgatga gtgcgtggaa gaagcaaata
    14821 aatttggcgt tcctgtgata gctgatggcg ggattaaata ttcaggtgat atcgcaaaag
    14881 ctttagctgt aggtgcgagt tctgttatga taggatcgct tttagctgga acagatgaga
    14941 gtccaggaga gctttttact tatcaaggaa gacaatataa gtcttatcgt ggtatgggct
    15001 cacttggggc tatgcaaaag ggaagttcgg atagatattt tcagcaaggt actgctcaag
    15061 ataaactcgt tcctgaaggt atagaagggc gtgttcctta tgtgggaagt ataagaagcg
    15121 tggtgcatca acttttagga ggtttgcgtt cttctatggg ttatgttggg gctaaagata
    15181 tagaagattt tcaaaaaaga gccgaatttg ttgaaattac cactgcaggg cttaaagaaa
    15241 gtcacgtgca tgatgttact atcactcatg aagcaccaaa ctacaaggtt aatcatcaat
    15301 gagttttgaa gaaaatttaa aacacgctaa tgaatctttg gaaaaattaa ataatcaaga
    15361 gcttgcctta gatgaaagtg taaaaattta taaagaaggt ttagagagta tcaaaaaagc
    15421 aagacttgag cttgaaaaag caaaattaga agtggagcaa atcgatgagt aaaatagcag
    15481 ctttacagtt tccaacttta gctttaagtg aatcaaggct tgattattat cttaaagctt
    15541 caaaagacaa tggagtaaat ttagtagttt tgggagaata tgtgatcaac agttttttta
    15601 cagaactttt gcatatgcca aaaaatatga taaaagaaca aagcgaagct aaaaaagaaa
    15661 gcttgattaa acttgctaaa aaatacgaat tagaaattat cgctccttat gtaagcgttg
    15721 aagctaaaag ttataaaaaa ctttgcttaa aagttactcc aaatggtgtg aaaagttatg
    15781 aacagcaaat tttaatgcct tatgaacatt ggaatgaaga aaaatttttc agcaacaaaa
    15841 ctccatcaga attaaaaatt tttactttta attatgaaaa attaaaatgt gctttgcttt
    15901 ttggttttga gacacatttt gatatttttt ggcaacagat tatggcgaaa aaaattgatt
    15961 tggttatcgt tcctagtgct tgtacctttg aaagcaaaca aagatgggaa gaacttttaa
    16021 aaacaagagc ttttttaaat tctacaagca ttttaagagt aaatcgcata ggcaaaacaa
    16081 aagatgagtg gaatttttac ggcgatactt tgtttattaa tgcttttggt gagatagaaa
    16141 gtaaattagg ttctgaagaa gaaatgctta ttatagagcc taaaaaaagt gatgaagcaa
    16201 gaaaactttg gggttttgat aaaattctta agaattttta aagaaggtga atatgagaaa
    16261 aattttactt caaattttta tt
//
LOCUS       DAPIWQ010000022        16260 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.022, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000022 DAPIWQ010000000
VERSION     DAPIWQ010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16260
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.022"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(5..895)
                     /locus_tag="RJ267_000516"
     CDS             complement(5..895)
                     /locus_tag="RJ267_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDV7388398.1"
                     /translation="MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVG
                     SHLLTFVRKGYKILHTASKDYKINSYETLFLKAGSYTLSNVGLSKGVYEAYLFFFDNA
                     FLIELIYKYKDFFKLDQKFQNYEIFWVKNDKILQGILESFSPHFEENTQILDPIVSLK
                     FEEIFLHLLLNKNIYFISFLSGILKEFRLDLSQLFEYCGREFLSVNEMSNFAKLDLAT
                     FSKEFKKCFGQSPKKWLDEKRLQKAKILLKFSKKNINEIANECAFSSVAWFIERFKEK
                     YEQTPKQYQKTKNLYFLSKN"
     gene            complement(892..1497)
                     /locus_tag="RJ267_000517"
     CDS             complement(892..1497)
                     /locus_tag="RJ267_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDV7388399.1"
                     /translation="MWDKKIIAISDRKCVEIDFLKQIEKLAKAKVDAIVLREKDLSEF
                     EYYDLAKEVLSICAKQKVTCFLHFFDRECLKLGHRYFHAPLSLLRKEPKLTKYFHILG
                     TSVHSKEELLEAMSYKVNYAFVGHIFESSCKMGLEPKGIDFLKSLLEFSQIPLYAIGG
                     INAQNIENFKDINVVGVCMREILMKEKDLKKYLLECRQNLR"
     gene            complement(1487..2632)
                     /gene="thiH"
                     /locus_tag="RJ267_000518"
     CDS             complement(1487..2632)
                     /gene="thiH"
                     /locus_tag="RJ267_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HDV7388400.1"
                     /translation="MQDYMQHLPHMQEIKSEILNKVLTQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSAAEDFIEELAFKSAKVKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLNEAEIHEEMQAIAKSGLEEILMLTGEGREFASVEYIANACKIAR
                     EYFKVVGVEIYPMNEDEYKILHEKGCDYVTVFQETYNPLKYSKIHLAGEKRIFPYRFN
                     AQERALKAGMRGVAFAALLGIDDFRKDALATALHAHFLQQAYSHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERIGFRDEVIKLGATKMSAGVS
                     VGIGEHKGEKKGDEQFEISDDRSVDEILAMLKRSNLQAVMSDSIYVG"
     gene            complement(2635..3411)
                     /locus_tag="RJ267_000519"
     CDS             complement(2635..3411)
                     /locus_tag="RJ267_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HDV7388401.1"
                     /translation="MQENLKNDKLKIGKYEFDSRFILGSGKYSLELIKSAIEEAKAQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNADEALRIARLSRELGCGELIKIE
                     VISDSRYLLPDNYETIKACELLAKEGFTPLPYMHADLYAARAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGSPSQACEAMQMGVSAVMVNTAIAEAKDI
                     ALMARAFSLAVNAGRAAFLAGVASVSEAKASSPLTGFLRD"
     gene            complement(3414..4217)
                     /gene="thiF"
                     /locus_tag="RJ267_000520"
     CDS             complement(3414..4217)
                     /gene="thiF"
                     /locus_tag="RJ267_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HDV7388402.1"
                     /translation="MMRVKFNGKELDTDFKTSLEFFENISKNENDVWIINGFATKENI
                     ALNENDELFCIEKNTLPPKDALDAMMRARHTPKLHDKLKNGRVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVIEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYISVEICTL
                     KIDEDNLESLFKDIDIVCEAFDSAIAKAMIAQNFHRFYKDGILICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKLGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            complement(4214..4405)
                     /gene="thiS"
                     /locus_tag="RJ267_000521"
     CDS             complement(4214..4405)
                     /gene="thiS"
                     /locus_tag="RJ267_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HDV7388403.1"
                     /translation="MIINGQKLELKELKFMDFIKEKGFKIELIALELNGEIVPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            complement(4415..5512)
                     /gene="dapE"
                     /locus_tag="RJ267_000522"
     CDS             complement(4415..5512)
                     /gene="dapE"
                     /locus_tag="RJ267_000522"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HDV7388404.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFKDEGEHLAFGGHVDVVPAGEGWSNNAFAPVEKEGFIYARGAQDMKSGVA
                     AFVDAAKNADFKGARLSLILTSDEEGEAIYGTKAVLEWMQERDMLPDYAVVAEPTCVK
                     KIGDSIKIGRRGSINGKLLIRGKQGHVAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSIEEFEKLCLVFKDLIENF"
     gene            complement(5516..6115)
                     /locus_tag="RJ267_000523"
     CDS             complement(5516..6115)
                     /locus_tag="RJ267_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HDV7388405.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGA
                     FSIDMLYLFLLQFGLLNFLDNVIFMRSLAIFGFCFLTYMAYLMLRKKKESLNLEHKEF
                     KESLLKSYIKGAFLNGSNPFVIGFWLSAASVVLSSDHAYLMTLGLVVAILFWVSALAF
                     VVARYSHVFSAKVVFIINIISAIIIEYFALNLLYKTFLG"
     gene            complement(6108..6809)
                     /locus_tag="RJ267_000524"
     CDS             complement(6108..6809)
                     /locus_tag="RJ267_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HDV7388406.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSATGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     VHLHGFLPELRCLKCEEIFNIGYEKIIDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLNQTSLFISIGTSGAVLPVGRYASMCEKSILNIYEKDANLERYFDKIYIEDIISAID
                     KIALDIENFMKDGNV"
     gene            complement(6852..10871)
                     /locus_tag="RJ267_000525"
     CDS             complement(6852..10871)
                     /locus_tag="RJ267_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HDV7388407.1"
                     /translation="MITKDNLKQVLENLGFKNKNENYVKTINNYTLLIDYKNQSINYP
                     KEIKIHDKTTSNFSHPENFVVFECVHRLLEKGYKAEYLELEPKWNLGRDKKGGKADIL
                     VKDNENNPYLIIECKTTDSKNSEFIKEWNRMQEDGGQLFSYFQQEKGVKYLCLYTSDF
                     SDKLEYKNYIIQAYDNEEYLKEKELQNSYKKSNNNIELFKTWKESYELQYFKQGIFEE
                     NVNAYKILEITPTFDNLKELKEEGKYHEFAKILRKHNISGKENAFDKLVNIFLCKIYD
                     ETFNKNNLKFGYFGVMADTYANMQDRLMWLYKEAMKEFLGEKITFVSNEDIEKDFKQL
                     KIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLTQNS
                     TNQFLGNLFELFLQKGMKQDEGQFFTPIQICEFIMYSLPLQEMLSKSSKALRVIDYAC
                     GAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILY
                     ADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSVKGFLETLSDKSKNTYKLF
                     NDDINIETNNSIECFFCERANQILNDNAKAAIILPSSILNKDSIYKNTREILFQNFDF
                     IAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAENLKDNENF
                     YQNYLSAYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYRNAFRQTSDYKKLKESKI
                     YKESKDKQDLEDKAFLAYTQAIEKDKLLYFCLSLNQEVLIIKSPSDIKEQKKFLGYEW
                     SNRKGDEGLKELHEPYLSPLFERGNPQNETKLNTLICKAFLKTLSDIPKDLQGYASKA
                     RLIDMMDFEKVEFNKAISLNVKSRDELNPFKNSKYELVRLGEVCDLNKIRNQASATEI
                     EKMNLNSGNVKLLPSSKNYEWWTDEKTAGQFINEGEVITLGVARYANIKKHKGKFVSA
                     NNHILSVKDKSKIIFDFLYILLEICGQKLYKQGQQYPQFDTNIFYSFKIPLPPLEIQK
                     QIVAECEKIEEQHNTLSLSIKEYQKLIKAMLQKSGIIEDNQEYELNSILENLQKLESK
                     LDFNLLLSLIEEQISHSEVLVEETQSKERKQDFNAFKNFSKTIQELLQTLSTPPKDGW
                     KRISLKNEQYMELNPSKKEISKLDENMLVSFIEMASVSDKGYIQSKIDRSLNEVRKGY
                     TYFIENDILIAKITPCMENGKCAIAKNLTNNIGFGSTEFHIFRAKTGLDSSFLFYNLN
                     QQNIREKAALAMTGASGHKRVPISFYENLTIPLPPLEIQEKIVQNIELVEQQIDLLNL
                     KLEFLEKEKEKILQKYLFS"
     gene            complement(10880..13090)
                     /locus_tag="RJ267_000526"
     CDS             complement(10880..13090)
                     /locus_tag="RJ267_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HDV7388408.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSNLHFKR
                     IHELCEVEFPTMPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKIKLGTNL
                     GSWLQKIEFVSGALELCLNFDEKGELKESLDERLVNLNAALRLKNESIIAEFKKFCYT
                     KALMPYLIDTQIHLINNLEALLVRGGFNHAIKAKIIGRSSGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLAKNLPFLKFINTAFDLFDHYSARVLLAKKRDFEFVL
                     CDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKASESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSKKNLLLGIDE
                     IELGTDFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEEL
                     SRPKYEFLKGTIGKSYAFETALRYQIPPNLVSEAKKLYGEDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKLHKAIEEAKKTIQLK
                     DIKDKQRSLNKTNELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSTPTPKISPKTSISVAKPTNLSVSLDLHGLRSDEAISRLDKFISD
                     ALLAGFDEVLVYHGIGTGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVRL"
     gene            complement(13080..13430)
                     /locus_tag="RJ267_000527"
     CDS             complement(13080..13430)
                     /locus_tag="RJ267_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388409.1"
                     /translation="MSRFFLYFLIILILALITFALREKLGKKTKPFFGILLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            complement(13423..14721)
                     /locus_tag="RJ267_000528"
     CDS             complement(13423..14721)
                     /locus_tag="RJ267_000528"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HDV7388410.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITNELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKHAKELGIKCLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLLDDASVIIGAILKEFGSNMIYKESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYGNEVSKLHYAYTQFLDTAKIRVINAEDEFLKNYKNE
                     SIKLYPSKDIKNCTMCIENFKPFTSFELKDLGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQEYARLGGYK
                     KITAIFEPHRYTRLAANLKEFAKAFEGVDELIILPVYAAGEEPIELDLKAVFPKALFV
                     EDIKREGKFLVASKGQVFEEGLIIGFGAGDISNKLRQKNE"
     gene            complement(14785..>16260)
                     /locus_tag="RJ267_000529"
     CDS             complement(14785..>16260)
                     /locus_tag="RJ267_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HDV7388411.1"
                     /translation="NLKILNLKLKPVNLRLFPLIALNLILIIVYVIALRGPFKHVAIN
                     VQNYSFSEYSVVNDTMLNPIMAFSWALKQYKEEAALKAITPLKAQELKEKLFDYLHQS
                     PINLKAEKNHPSVFVNLMESFGLNLADFTNTEHNFLGSLDKHFKQDFLFKRFLSSSNG
                     TIPSFANLFFVSPFSNISTSKFQKTYLDLTPIAIYKKAGYKVIFVSAGNGSWQNIKNY
                     LSILGVDEIIDENILMKEYNGAKDSENGYGVADEFLYKKVYDLLQKNPHNTLIIALTI
                     SNHPPYKIPQNDLPKLQNIPQTLLNMLPYEKDKQDNIIKAYTYANNEFGKFLDKVKQS
                     SFKDNVIIAATGDHRVREMSIDLNSQKAFAYSVPFYLYIPKDLQDDIYYDKDRVGSHK
                     DIFPTLYALSLNNVKYLSVGGRNMLARPSDEKLEFGINDAVWIDKKGIYSGGKGYYFE
                     SNDTLKDMNKAFNLDVYTKDFDKFYRELNLYQLAERLGISK"
BASE COUNT         5281 a         2986 c         2014 g         5979 t
ORIGIN      
        1 tgtgctagtt ttttgataaa aaatacaagt tttttgtttt ttgatattgc ttaggagttt
       61 gctcatattt ctctttaaat ctttcaataa accaagctac cgaagaaaaa gcgcactcat
      121 tagctatttc attgatattt tttttagaaa atttaagtaa aatctttgct ttttgcaacc
      181 ttttttcatc taaccatttt ttaggacttt gtccaaaaca tttcttaaat tctttagaaa
      241 aagttgctaa atctaatttc gcaaaattag acatttcatt tacgcttaaa aattctctac
      301 cacaatactc aaaaagttgg gaaagatcaa ggcgaaattc ttttaaaatt cctgataaaa
      361 aactaataaa ataaatattc ttatttaaaa gcaaatgtaa aaaaatctct tcaaatttca
      421 aactcactat aggatctaaa atttgcgtat tttcttcaaa atgcggtgaa aaactttcca
      481 aaattccttg caaaatctta tcatttttta cccaaaaaat ttcatagttt tgaaactttt
      541 gatctagttt aaaaaaatct ttatacttat aaataagctc aattaaaaat gcattgtcaa
      601 aaaaaaataa ataagcttca taaactcctt tactaagtcc tacattgctt aaagtatagc
      661 tcccagcttt taaaaacaaa gtttcataag agttaatctt ataatctttt gatgcagtgt
      721 gtaaaatttt atatcctttg cgaacaaaag ttaaaagatg acttcctaca ttaacaaaag
      781 tagaatgcga agtatccgtt tgtgtatatt tagcaaaagt gcaagattta atttttttat
      841 aattgacacc ttttaattgc tttaaatctt ctggtaaaga aagaatttta ttcatcgtaa
      901 attttgccta cattctaaaa gatacttttt aagatctttt tctttcatta aaatttcacg
      961 catgcaaaca cctactacat ttatatcttt aaaattttct atattttgag cattgatacc
     1021 gcctatagca taaagtggaa tttgactaaa ttcaagcaag gattttaaaa aatcaatccc
     1081 tttaggttct aaacccatct tgcaagaact ttcaaaaata tgccctacaa aagcataatt
     1141 taccttatag ctcatcgcct ctaaaagctc ttctttgcta tggactgaag taccaagtat
     1201 atgaaaatat tttgttaatt taggttcttt tcttagcaaa gaaagcggtg cgtgaaaata
     1261 acgatgtccc aattttaaac actccctatc aaaaaaatgc aaaaaacaag tcactttttg
     1321 ctttgcgcaa atgcttaaaa cttcttttgc taagtcataa tactcaaatt cgcttaaatc
     1381 tttttctctt aaaactatag catctacctt agccttagca agtttttcaa tctgctttaa
     1441 aaagtctatt tctacacatt ttctatcgct tatggcgatg atttttttat cccacataga
     1501 tactatcgct catcacagct tgtaaattgg atcttttaag catagctaaa atttcatcta
     1561 cgcttctatc atctgaaatt tcaaactgct catcaccctt tttctcaccc ttatgctcac
     1621 ctatacccac actcactcct gcactcattt tagtagcacc aagcttgata acctcatctc
     1681 taaaacctat tctttcacga cttgaaatgg taatgcccgc aaaaggcaaa aagagcctat
     1741 aagcacaaag tacttgcaaa aggcgttttt cacttacatc tttaggatgg attttggcat
     1801 tattgataat aggtcttaaa cgcggcactg aaatagaaat ttcagcatgc gaataagctt
     1861 gttgtaaaaa atgtgcatga agcgccgtag caagagcgtc ttttctaaaa tcatctatac
     1921 ctaaaagtgc cgcaaaagcc actccacgca tacccgcttt taaagctctt tcttgagcat
     1981 taaagcgata aggaaaaatg cgtttttcac cagctaaatg aattttagaa tattttagag
     2041 gattgtaagt ttcttgaaaa acagtcacat aatcacaacc cttttcatgc aaaattttat
     2101 attcatcttc attcatagga taaatttcaa cgcccacaac cttaaaatac tctctagcta
     2161 ttttacaagc atttgctata tattctacac ttgcaaactc cctgccctcg cctgttagca
     2221 ttaaaatttc ttctaaacca cttttagcaa tggcttgcat ttcttcgtga atttcagctt
     2281 catttagctt agctcttgcg attttattac ctttttgaaa accacaataa acacatttag
     2341 aattacaata atttgacaaa taaagcggag taaaaagaga gatagaattt ccaaaatatt
     2401 tttgcttgac tttagcggat ttaaaggcta attcttctat gaaatcttct gctgcacttg
     2461 aaagcaaggc ttttaaatgc tctatgctta aatgtgtttg atttaaagca tttttaacat
     2521 ctttagcgct aaattgactc tcatcatagc tttgaacttg agttaaaacc ttgtttaaaa
     2581 tttcgctttt tatttcctgc atgtgaggta aatgctgcat ataatcttgc ataatcaatc
     2641 ccttaaaaag cctgttaatg gagaacttgc tttagcttca ctcacacttg ccacacctgc
     2701 taaaaaagcc gctcttcccg catttactgc caaagaaaaa gctctagcca tcaaggctat
     2761 atctttagct tcagctatgg ctgtatttac catcactgca cttactccca tttgcatagc
     2821 ttcacaagct tgtgaaggac ttccaatacc cgcatctaca atgataggca aatcaatttc
     2881 attaagcaaa atttgtataa attccttagc acataaacct ttattactcc caataggcgc
     2941 tgctaaaggc atgatagccg cagctccagc atcacgcata gctctagctg cgtaaagatc
     3001 agcatgcatg taaggtaggg gcgtaaaacc ctctttagct aaaagctcac aagctttaat
     3061 cgtttcataa ttatcaggca ataaatacct actatcactt atcacttcta ttttgataag
     3121 ttctccacaa ccaagctctc ttgaaagcct tgcaatgcgt aaggcttcat cggcgtttct
     3181 tgcgcctgaa gtgttgggta aaagtgtgat atttttaggg atataatcaa gtatattagc
     3241 aatttcccct gtatttgcac ggcgtaaggc tagagtgata atctgtgctt tagcttcttc
     3301 tatagctgat tttataagct ctagcgaata ttttccagaa cctaaaataa atcttgaatc
     3361 aaactcgtat ttgcctattt ttaatttatc attttttaaa ttttcttgca tttttactcc
     3421 ttatttgcta aaagctctaa aacaaggtta ctttgatgtc ctgcgcaaat atttaccctt
     3481 ggcgccataa gtccatttcc tagcttagca ccatttacca aatccccaca cacatagaaa
     3541 tttttagcaa tttttcttgt ttgtatgctg ttgctatcac catagcccgc aagccctgaa
     3601 gcgcagatta aaataccatc tttgtaaaat ctatgaaaat tttgcgctat cattgctttt
     3661 gcgatagcac tatcaaaggc ttcacaaact atatctatat ctttaaacaa agactctaaa
     3721 ttatcctcat cgatttttaa agtacaaatt tcaacgctga tataaggatt aatttcgcta
     3781 atttgctctt ttaaagcttc ggttttaaac ttgcccaaat cacttacacg ataagcctga
     3841 cgatttaaat tactaggctc aatcacatca aaatcaatca actttaaata ccccactcca
     3901 cttcttgcta aatttatcgc aatgtgcgat ccaagtccgc ctaaaccaca caccgccacg
     3961 cgcccatttt taagtttatc gtgaagcttt ggtgtatgtc ttgctctcat catagcatct
     4021 agtgcgtctt ttggaggtaa agtatttttt tctatacaaa aaagctcatc attttcattt
     4081 aaagcgatat tctcttttgt tgcaaaacca ttgataatcc atacatcatt ttcatttttg
     4141 ctgatatttt caaaaaattc caaacttgtt ttaaagtctg tatcaagttc tttgccattg
     4201 aattttactc tcatcatcca cctcctacaa aacttacgat ttcagcttta tcgttttctt
     4261 ttaaaatcaa attttcaaat tcgctcttag gtacaatctc tccatttaat tccaaggcga
     4321 taagttcgat tttaaaacct ttttctttga taaaatccat aaatttaagc tcttttaact
     4381 caagcttttg tccattgata atcattctaa acctttaaaa attttctatc aagtctttaa
     4441 aaacaaggca aagtttttca aattcttcta tgcttactct ttcatcaata gcgtgaattc
     4501 tatcattaca aaccccaaat tctactacct ttacaccgta ttttgcaaaa taccttgcat
     4561 cacttgtacc gcctttggta ttaagctctg gcacttcatg agtgattttt tgaacgcttt
     4621 cattcatttt ttgaacgatt ttattatcga tatttgtcaa aaaagcttcg cttgattgtt
     4681 ttagctctaa ctcatagttt aaaccatgac aaattttttc tacataactt tttacatctt
     4741 ctaagcttgt atcaggggaa ttgcgtacat taaacataag ttttaaatca tttggcgtta
     4801 cattacatac ccccatacct ccacgaatat cagttataac gatttttgaa ggactaaatt
     4861 cagcacttcc aggatcaaga tcaaaacccg ctaaaagctt taaaaccggt gcaaaatcat
     4921 gcacaggatt gatacatttt tcaggataag caacatgccc ttgttttcca cggattaaaa
     4981 gttttccatt gatagaacca cgacgcccta ttttaatact atcgccgatt tttttaacac
     5041 aggttggctc tgcaaccacg gcataatcag gtaacatatc tctttcttgc atccattcta
     5101 aaacagcctt ggttccatat atagcctcgc cttcttcatc acttgttaaa ataagactca
     5161 gtcttgctcc tttaaaatcc gcattctttg ccgcatccac aaaggctgct actccgcttt
     5221 tcatatcttg agcacccctt gcatagataa agccttcttt ttccacaggc gcaaaagcat
     5281 tattactcca accctcgcct gcaggcacca catctacatg cccaccaaaa gctaaatgct
     5341 cgccttcatc tttaaatttt ttagtgagta aaaggttttt aatgccttct ttttctataa
     5401 aaaaagcttc aaaatcactc agttccatag cgatgaaatt taaagctcca tcatcatttg
     5461 gcgtaacaga tttaaatttt aaaagttcga ttaaaaattc ttttgcattc attttttatc
     5521 ctaagaaagt tttatataat aaattaagag caaaatactc tataattata gctgaaatta
     5581 tattgattat aaaaacaact tttgcactaa aaacatgact atatcttgcc accacaaagg
     5641 ctaaagcact tacccaaaaa agtatagcca caacaagccc taaagtcatc aaataagcat
     5701 gatcgctgct taaaactaca cttgcagcac taagccaaaa tcctatcaca aaaggatttg
     5761 aaccatttaa aaaagctcct ttaatataac ttttcaaaag actttcttta aattctttat
     5821 gctctaaatt taagctttct ttcttttttc ttagcatcaa atacgccata taggttaaaa
     5881 aacaaaaacc aaaaatcgcc aaagaacgca taaaaatgac attgtctaag aaatttaaaa
     5941 gcccaaattg aagcaaaaaa agataaagca tatctatact aaatgctcca agtcctacag
     6001 ctatggaatt tttaaaagct tttagcgcat aagttaaaat caaaatattt acaggtccaa
     6061 aaggcacact cactccaaag cccaaaaaaa ctccacttaa aaaagaatca aacattacca
     6121 tctttcataa aattttctat atcaagtgcg attttatcaa tagcgcttat aatatcttct
     6181 atatagattt tatcaaaata ccgctctaaa ttcgcatctt tttcgtagat atttaaaata
     6241 cttttttcgc acattgaagc ataacgccct acaggcaaaa ccgccccact tgtgcctatg
     6301 ctgataaaaa gcgaagtttg atttagcaaa gaataaagcg tagcataagc aggagcttgc
     6361 tcttcaaaca tgactatatt gtgtcttaaa tccttgcttt tgcattttgg gcattgttta
     6421 tctatgattt tttcataacc tatattaaaa atttcttcgc attttaagca gcgaagttca
     6481 ggtaaaaagc catgcaaatg tactacatct ttacaccctg cacgctctag caaatcatct
     6541 acattttgcg tgatgacaaa aaggttttta ccccattttt cttttaactg tgcgattttt
     6601 tcatgagcat gatttggctt tacattttga agttgtgccc ttcttgcatc gtaaaaatca
     6661 agtacttttt taggattttt tctaaaacct gttgcagagc aaacctccat cacatcgtat
     6721 tcttcccaaa gtccatcatt atctctaaaa gttttaagcc cacttggagc agacaaaccc
     6781 gctccgctta atatcataat gtttttcatc gctaaacctt ataaaattta caaagtttag
     6841 cgaaaaatgc tttaagaaaa taaatatttt tgcaagattt tttctttttc tttttctaaa
     6901 aattctaatt taagattaag aagatcaatt tgttgttcta ctaattcaat gttttgaaca
     6961 attttttctt gaatttctaa cggtgggagt gggattgtaa gattttcata aaaacttata
     7021 ggaactcttt tgtgtccact tgctccagtc atagcaagag ctgctttttc tcttatattt
     7081 tgttgattta gattatagaa taagaaacta ctatcaagcc ctgtttttgc tctaaaaata
     7141 tgaaattctg tgctaccaaa acctatgtta tttgttagat tttttgcgat agcacattta
     7201 ccattttcca tgcaaggagt aatttttgca atcaaaatat cattttctat aaaatatgtg
     7261 tagccttttc ttacttcgtt taatgaccta tctatcttac tttgaatata acccttatct
     7321 gaaacgctag ccatttctat aaatgagaca agcatatttt catcaagttt tgatatttct
     7381 tttttgctag gattaagttc catatattgt tcattcttta aagaaattct cttccagcca
     7441 tcttttggtg gagttgagag agtttgtaaa agctcttgta tagttttaga aaagttttta
     7501 aaagcattaa aatcttgctt tctttccttg ctttgagttt cttcaactaa tacttcagaa
     7561 tgactgattt gttcttcaat tagcgaaagc aaaagattaa aatcaagctt agattctaat
     7621 ttttgcaaat tttctaaaat agaatttagt tcatattctt gattgtcctc tataatacca
     7681 gatttttgaa gcattgcttt gattagcttt tgatactctt ttatactcaa gcttaaagta
     7741 ttatgctgct cttctatctt ttcacactct gctacgattt gtttttgaat ttcaagcggt
     7801 ggaagtggga ttttaaaact ataaaaaata ttagtatcaa actgtggata ctgttgtcct
     7861 tgtttatata gtttttgtcc gcaaatttct aataaaatat acaaaaaatc aaaaataatc
     7921 ttgcttttat ctttaacact caaaatatga ttatttgctg aaacaaattt acctttatgt
     7981 tttttaatat ttgcatatct tgccactcct aaagtaatta cttcaccttc gtttataaat
     8041 tgtccagctg ttttttcatc tgtccaccat tcgtagtttt tagaacttgg taaaagtttt
     8101 acatttccac tgtttaaatt cattttttcg atttctgtcg cactagcttg atttctaatt
     8161 ttatttaaat cacacacttc ccctaatctc accaactcat acttagaatt cttaaaagga
     8221 tttaactcat ctcttgattt tacgtttaaa cttatagctt tattaaattc cactttttca
     8281 aaatccatca tatcaataag cctcgcttta ctagcatagc cttgcaaatc ttttggtata
     8341 tcgctaagag tttttaaaaa tgctttacaa attaaagtat taagcttagt ttcattttgc
     8401 ggattgcctc tttcaaaaag tgggctcaaa taaggctcgt gcaattcttt taaaccttca
     8461 tcaccttttc tattactcca ctcataacct aaaaatttct tttgttcttt tatatcactt
     8521 ggagatttta tgattaaaac ttcttgatta agacttagac aaaaataaag caatttatcc
     8581 ttttctattg cttgagtata agctaaaaag gctttatctt ctaaatcttg cttatcttta
     8641 ctttctttat aaattttaga ttctttaagt tttttataat cacttgtttg cctaaatgca
     8701 ttgcgataat ctttaaaggc ttctagctct gcaagtttag aatctaagtt tccatttaaa
     8761 aaattgctat aaagctcttt atcaaatttt ctaaaatcac aatacgcact tagataattt
     8821 tgataaaagt tttcattgtc ttttaaattt tcagcttcta tgcgttcttt aatcaaacta
     8881 taatcttgag aaataagatg attttcttgt ttaaaagttt cttttttgcg taaaaataaa
     8941 ataatcgtat ttgtccctgt tgctccaaat gtttgattac ctagctctac aatggcaata
     9001 aaatcaaaat tttgaaataa tatttctctt gtatttttat aaatagaatc tttatttaaa
     9061 atagaacttg gtaagataat agcagcttta gcattatcat ttaaaatttg atttgctcgc
     9121 tcacaaaaaa agcattcgat agaattattt gtttctatgt ttatatcatc gttaaaaagt
     9181 ttataggtat tcttagattt atcacttaaa gtttctaaaa atccttttac agaataaggc
     9241 ggatttgcta taagcaaatc aaaactattt gattctattt gtggttttgc tttttctcct
     9301 tctaaattat ttgtatttgc taattcaaaa gaagcaagtg catcagcgta taaaatattg
     9361 atttcatttt gtccatacat tgcacttgat accttagaaa ccttacttaa gcgatactct
     9421 ttttcaatac cataaatatt tttataatgc tctttaagct catcttctgt tagataacgc
     9481 ttaagctcat tggcataggt gtttaaaaaa tgtccagcac cacaagcata atcaatcacc
     9541 cttaaagctt tagagctttt gcttaacatt tcttgaagcg gtaaagaata cataataaat
     9601 tcacaaattt gaataggggt aaaaaactgc ccttcatctt gcttcatacc tttttgcaaa
     9661 aaaagttcaa aaagattgcc taaaaattga tttgtagagt tttgggtaag cttgtaattt
     9721 gcaaaaagct ctactatttc ttttaataca agtgcatttt ttaagaataa ttctttatta
     9781 tgcacttcta aaaatgcaaa atcattattt gaataaaatt ttaattcttt gatgtaattt
     9841 tgcattactt cttttaaagt ttttatcttt aattgcttaa agtctttttc tatatcttca
     9901 ttagatacaa aggtaatttt ctctcctaag aattctttca tagcttcttt ataaagccac
     9961 attaatctat cttgcatatt tgcataagta tctgccatta caccaaaata tccaaatttg
    10021 agattgtttt tattaaaagt ttcatcataa attttgcaaa gaaaaatatt tacaagttta
    10081 tcaaaggcat tttccttgcc tgatatatta tgcttgcgta aaatttttgc aaattcgtga
    10141 tatttacctt cttctttaag ttccttaaga ttatcaaaag ttggagtaat ttctaaaatt
    10201 ttataagcat tgacattttc ttcaaaaata ccttgtttaa aatattgcag ttcataactt
    10261 tctttccaag ttttaaaaag ttctatattg ttattagatt ttttataaga attttgtaat
    10321 tccttttctt ttagatattc ttcgttatcg taagcttgta tgatgtaatt tttatattct
    10381 aacttatcgc taaaatcact tgtataaaga caaagatatt ttacaccttt ttcttgctga
    10441 aaataagaaa aaagctgccc gccatcttct tgcattctat tccattcttt tataaattca
    10501 ctatttttag aatctgtggt tttacattct ataatcaaat aaggattgtt ttcattatcc
    10561 tttactaaaa tatcagcctt accacctttt ttatccctgc caagattcca ttttggctct
    10621 aactctaaat attcagcctt gtaacctttt tctaaaagtc tatgcacaca ttcaaaaact
    10681 acaaaatttt cagggtgtga aaaattagaa gtagttttat cgtgaatttt tatttctttt
    10741 gggtaattaa tactttggtt tttataatct attaaaagag tgtaattatt gattgttttt
    10801 acataatttt catttttatt tttaaagcct aagttttcta gaacttgttt taaattatct
    10861 tttgtaatca tttatttcct tataatctca ccaccttagc accaaagcca ccttgattga
    10921 tcggtgcgtc attaaagccc ttgacacttt tatgagtttt caaaaactct cttacagcaa
    10981 aggcaagctt tcctgttcct ataccatggt aaactaaaac ttcatcaaag cctgcaagca
    11041 aagcatctga aataaattta tcaagccttg aaatagcttc atcactccta agcccatgca
    11101 aatccaagct aacgctaaga ttagtcggtt ttgccacact aatgcttgtt tttggactta
    11161 ttttaggtgt aggagtgctt tttttaagca gttttaaagg cacacgaagt ttgatcccat
    11221 cactttcaac catagcatcg tttttagaaa tgcttatgat tttaccctta attttttcat
    11281 attttacaaa atcccccaca cgcaattctt cgttttgctc catacttggc aagatgattt
    11341 cttttttaag ttcattggtt ttattaagac ttctttgctt gtcttttata tctttaagct
    11401 gtatggtttt tttagcttct tctatggctt tgtgcaattt aaattctaaa tttctcaaac
    11461 tcgtacgaaa ttcttgttca tttttttctt tttgctcttt taaagaaagt aaaatttcat
    11521 cgactttttg ctcttttttc tcaacatttt caagcttagc ttttagttct aattcaagat
    11581 tgatattttt acccacaagc tcttctaaat tttctttatc ctcgccataa agctttttag
    11641 cctcgctaac taaattcggc ggaatctgat aacgcaaagc agtttcaaag gcataagatt
    11701 ttcctatagt accttttaaa aactcatatt ttgggcgtga aagctcttca tcatataaag
    11761 cagcaatgag ttcaacttgc tcattctttg ctaaaagcat ggcaaggcgt ttgtggtgcg
    11821 tggtgatgat gattttaaga ttattagcta tgagttttga aattaacaca ctatacaaac
    11881 aagccgcttc ttcaaaatct gttccaagct ctatttcatc gatacctaaa agcaaatttt
    11941 tcttagaaaa aagcctggaa aagtgcaaca ttcttcctgc aaaagttgaa atgtcgtttt
    12001 taacattttg cggatcttct atgatggcat caaattcttt aaaagtacca attttacttt
    12061 cacttgcttt gatatgcata ggcaaaagat gtttagctaa aaatgctgca cttagcatgg
    12121 attttaaaag catggatttt ccgcctgcat ttacccctgt gatgattaaa acttgttttt
    12181 taaattccaa actcacgctt tttggatttt ttaaagcagg atgagcgaaa tttttaagaa
    12241 ccaaatctgt actttgatca cacaaaacaa attcaaaatc ccttttttta gcaagcaaaa
    12301 ccctagcact ataatgatca aaaagatcaa aggctgtatt gataaatttt aaaaaaggta
    12361 ggttttttgc taaaaaagct gagaaatttt tagcgtattc ataataaatt tcttcttttt
    12421 gatttttgat tttttctata tcattttgca aattttcaac acttaaaggc acgatataaa
    12481 agccaccgcc actacttcta cctatgattt ttgctttaat agcgtgatta aacccgcctc
    12541 ttacaagcaa ggcttcaaga ttgtttataa gatggatttg tgtatcgata agataaggca
    12601 ttaaagcttt tgtatagcaa aatttcttaa actcagctat tatgctttca ttttttaatc
    12661 ttagagcggc attaagattt acaagtcttt catctaaact ttcttttaat tctcctttct
    12721 catcgaaatt caaacaaagc tccaaagccc cgctaacaaa ttctatcttt tgtagccaag
    12781 agcctaaatt tgttcctagt tttatttttt ttaacttttc aaaataacga aaaattttta
    12841 caaattcaaa aatttcatct aaatgtaaaa ttccttgctt acttaaatgt actaaggctt
    12901 tatcaagatt gctaagctct ggcatagtag gaaattccac ctcacaaagc tcatgtatgc
    12961 gtttaaaatg gagattagaa tctccttgca aaaaaatctc cttatctctt gcaaaaaggg
    13021 ctttaaactc ttctaaatag ctgtttaaat caagctttga gatcaattct tcttttgtat
    13081 cattcatcat ttaacctaca atctttaata tctatgatta aagaattaaa actttgatta
    13141 ttatcttttg aaataaaact tcctgtacca aattcataat taaaatacgc cttagaaaca
    13201 ttgatatctt tacataaaat atttttattt tgattaaaag ctacgataat atctgttctt
    13261 aaatgacttt tttgtgtgtt ttcaaattca aaaaataccg ctaaaacaat aaaaatcaca
    13321 agtaaaatac caaaaaaagg tttggttttt ttacctaatt tttcacgcaa agcaaaagtg
    13381 attaaggcta aaattaaaat aattaaaaaa tataaaaaaa acctactcat ttttttgcct
    13441 taatttatta ctgatatctc ctgcgccaaa acctataata agcccttctt caaaaacctg
    13501 ccccttagaa gccaccaaaa atttaccctc tcttttgata tcttctacaa ataaagcctt
    13561 aggaaaaacc gcctttaaat caagttctat aggctcttct cctgcagcat aaacaggtaa
    13621 aattataagc tcatcaacac cttcaaaagc ctttgcaaat tcctttaaat ttgcagccaa
    13681 acgcgtgtag cggtggggtt caaagatagc tgtgattttt ttatatccgc ctaatcttgc
    13741 gtattcttgt gctgcactta aagtcgcttt tatttcggta ggatgatgac cataatcatc
    13801 gattaaaacc aaattttcat cagcatgtaa aatatcaaaa cgctttttaa taccttgata
    13861 atttttaagc ctagttctta tcgtttctat atctaagaaa tttaaagccg ctaaaatcgc
    13921 caaagacgca tcaagggcta aatgatatcc catgccaaaa actttaaact cacctaaatc
    13981 tttcaactca aagcttgtaa aaggtttgaa attttctata cacatggtgc agtttttgat
    14041 atctttactt ggataaagct tgattgactc atttttataa tttttcaaaa actcatcttc
    14101 agcattaatc acgcgaattt tagccgtatc taaaaactgc gtataagcat aatggagttt
    14161 tgaaacttca ttaccataat gatctaaatg ctctgcttct gcattagtaa ctatagccaa
    14221 ataaggattt gaatttaaaa aagaactatc gctctcatca gcttcaaaaa caaggttttg
    14281 actttcctta taaatcatat ttgaaccaaa ttcttttaaa atcgctccga tgatcacaga
    14341 agcatcatca agtaaagaag ctaaaatact tgaagtcgtg ctttttccat gtgctcctgc
    14401 aactgcaaaa acacgcttat cttctaaaat aagaggtaag gcttccttgc gtgaaagaca
    14461 cttaatacct aattctttag cgtgtttaaa ttcaggattt tcttctttga tagcagcaga
    14521 ataaataact aaatctttgt ttaaaatatt gtctttatga tgagggatac tgaccttaac
    14581 cccttctttt tctagttcgt tagtgatttt actttcttta agatcacttc cgctaatctt
    14641 aaaacctttt tcttttaaaa atcttgctaa agcggaaatt cctataccgc ctatgccgat
    14701 aaaatggata ttttgcatca tttaaacctt tatactttaa aggctaaatt ttagcacttt
    14761 tttactaaaa agaaaatata aatcctattt tgaaatgcct aaacgctcgg ctaattgata
    14821 taaatttaac tctctataaa atttatcaaa gtctttagta taaacatcaa ggttaaaagc
    14881 tttattcata tcttttaaag tatcattact ttcaaaataa taccctttac cgccactata
    14941 aatacctttt ttatcaatcc atacagcatc gttaatccca aattctaatt tctcatcact
    15001 tggtcttgct aacatatttc ttccgcctac gcttaaatac ttaacattat ttaaacttaa
    15061 agcataaaga gttggaaaaa tatctttatg agatcctaca cgatctttat cataataaat
    15121 atcatcttgt aaatccttag gaatataaag ataaaaaggt acactataag caaaagcttt
    15181 ttgggaattt aaatctatac tcatttcgcg tactctatga tctccagttg ctgctataat
    15241 gacattatct ttaaaagaac tttgttttac tttatctaga aattttccaa attcattgtt
    15301 tgcataagta taagctttga taatgttatc ttgtttatct ttttcataag gaagcatatt
    15361 aagcaaagtt tgcggaatgt tttgtaattt tggcaaatca ttttgtggaa ttttataagg
    15421 tggatgatta gaaatagtaa gagcaattat aagggtgttg tgtggatttt tttgaagtaa
    15481 gtcataaact tttttatata aaaactcatc agctacccca taaccatttt cgctatcttt
    15541 tgctccatta tactctttca ttaaaatatt ttcatctata atctcatcta cccccaaaat
    15601 actgagataa tttttaatat tttgccaaga tccattacct gcacttacaa aaatcacctt
    15661 atatcctgct ttcttataaa tagcaatagg tgttaaatct aaataagttt tctgaaattt
    15721 acttgtggaa atattagaaa atggacttac aaaaaataag tttgcaaaac ttggtatagt
    15781 tccattacta gaactcaaaa agcgtttgaa taaaaaatct tgcttaaaat gtttatctaa
    15841 cgaacccaaa aaattatgtt ctgtatttgt aaaatcagcc aaattaagcc caaaactttc
    15901 cattaagtta acaaatacac taggatgatt cttttcagct tttagattta taggactttg
    15961 atgcaaataa tcaaaaagtt tttctttaag ttcttgtgct tttaaaggtg tgatagcctt
    16021 caaagctgct tcttctttat attgttttaa agcccaagaa aatgccataa ttggatttaa
    16081 cattgtatca tttacaacac tatattcgct aaaagaataa ttttgcacat ttatagccac
    16141 atgcttaaat ggacccctta aggctataac ataaacaata attaatatta aatttaaagc
    16201 tatcaaggga aataatctta aattaacagg ttttagcttt aaatttaata ttttcaaatt
//
LOCUS       DAPIWQ010000023        16192 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.023, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000023 DAPIWQ010000000
VERSION     DAPIWQ010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16192)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16192)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16192
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.023"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..339
                     /locus_tag="RJ267_000530"
     CDS             <1..339
                     /locus_tag="RJ267_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388412.1"
                     /translation="NLLEQLKNKNTNLYAIFLLKENINDFNNTTLQNELKQIYNNAQT
                     NTLLKNIIALSLGDKSIFLKNYDKLLEAYKLLEQNKIEEANVLLSQIKENSSLNQIAK
                     NLKHYQGITQ"
     gene            336..1334
                     /locus_tag="RJ267_000531"
     CDS             336..1334
                     /locus_tag="RJ267_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7388413.1"
                     /translation="MKKIFLTLFCLIFLCACGTKRQYFEPKQTDGDLSHNSNLKSKIV
                     DWNLVSAKLSNNTTILKNNISIDKFKLPKNYMLLAYQDGEYFTADNNGNLKIFDNSYN
                     EIYNFQFDASVVGVASNGDDLALVLANNTIVLANRSLGIKFSQTLTSAPAQDSRTANP
                     IFLDNIIVYPTLDGKILILSRNNLQIIKDVVISAENFFNNVIHLSVIGDKLIAATAKK
                     IIVVSPARTLYLDADIKDVALSDDGIFILEKDGTIIKTDYNLRKIAEKKFEFAIFVKS
                     NIYNNYLYIFEKTGYLIKMNLNLDNAQVFKLSEAVDKISFMGNGKFYYGDKILDLL"
     gene            1331..1621
                     /locus_tag="RJ267_000532"
     CDS             1331..1621
                     /locus_tag="RJ267_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tram-like protein"
                     /protein_id="HDV7388414.1"
                     /translation="MIKILEQTIKALKLNLKPYDLSMLTRKKSYICAKDQNNILFMYT
                     GKTKFLMKDALFLENLAQQININNKYFFSMASLCSKAKNHLEMKGFNIYVAL"
     gene            1608..2237
                     /locus_tag="RJ267_000533"
     CDS             1608..2237
                     /locus_tag="RJ267_000533"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HDV7388415.1"
                     /translation="MLLCDIGNSNANFLDDNKYFTLNIDQFLEFKNEQKIFYINVNEH
                     LKEHLKNQKKFINLEPYFLFDTIYQGLGIDRIAACYTIEDGVVVDAGSAITIDIISNS
                     IHLGGFILPGIANYKKIYSHISPRLKSEFNTQVSLDAFPQKTMDALSYGVFKGIYLLI
                     KDAAQNKKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKIIKENPNLLY"
     gene            2356..3702
                     /locus_tag="RJ267_000534"
     CDS             2356..3702
                     /locus_tag="RJ267_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HDV7388416.1"
                     /translation="MSQQEFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAAT
                     LNSKGTSNSQTIHCGDIETNYTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKMAL
                     AVGDIECDYMKKRYEEFKELYPYIKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGV
                     ESGEVFTTVDFGKMSINLIEQAQKQNKNTFVAFNQEIIHIEKKDDIFILKTSNHQEYH
                     AKSVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFNMFKDA
                     TIRNYIFYNYLFELPFVDKSLFVKDAKKIVPSLKASDIYYAKGFGGVRPQVIDKTKGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLVCNYLGMEFNEDKFSSELL"
     gene            3751..5193
                     /gene="pyk"
                     /locus_tag="RJ267_000535"
     CDS             3751..5193
                     /gene="pyk"
                     /locus_tag="RJ267_000535"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDV7388417.1"
                     /translation="MLKKTKIVATVGPASEKEEILRQMIINGVNVFRLNFSHGTHEYH
                     KKNLDTIRRVAKELHTRIGILQDISGPKIRTGELKEPFELKKGDRLDFYRETILGEKI
                     AQNHYKISINQKSILDMLKIDEYIYLYDGSIRAKVVNIDNQKIETIIENDGFLNSNKG
                     INFPNTKINIDVITQKDKNDLLWGIKNEVDFLAISFVQNAHDIDEVREILAQNNAKIS
                     IFAKIEKFDAVENIDEIIKSSDGIMVARGDLGIEVPYYKVPNIQKEIIQKANNASKPV
                     ITATQMLFSLAKSKTATRAEISDVANAVLDGTDAVMLSEESAVGIDPANAVDIMCQTI
                     IETEKRYPYNKFNDFNDLDNTDKIMRSSAHLATDLNADAIFSLTSSGKSAIKIARYRP
                     NIEIIAVGHSEKTLNSLSIVWGVNPAILVNKSNELTELLKDSVRSSVEKGFMDEDKCY
                     LLTAGFPTGVEGTSNLIRILNKEQIAYYLQ"
     gene            5291..5926
                     /locus_tag="RJ267_000536"
     CDS             5291..5926
                     /locus_tag="RJ267_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388418.1"
                     /translation="MQVNTFSNIASMARTQVSNKKADDAKENTKDKNVQSANSSKDVD
                     KNTLEKLNALGGKGITQIYLVQFQQQTMNAVIGSSNAQTGLDSLLNGANLDTAKSILT
                     NIDFASLGYSSKNPLDMNTDELQQLVSEDGFFGVENTANRIADFVIKGGGDDVEKLKK
                     GLEGMKKGFEQAEKMWGGELPQISQNTIDAALKKVSDRIDELGGKTLDLQA"
     gene            complement(5957..8419)
                     /gene="pflB"
                     /locus_tag="RJ267_000537"
     CDS             complement(5957..8419)
                     /gene="pflB"
                     /locus_tag="RJ267_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein PflB"
                     /protein_id="HDV7388419.1"
                     /translation="MAEQEDIILEKPEDGLNQPRLDESLEGFKGQEGQAPEDEEFASL
                     PEELPQENSESGFKFTRESAPEDVSTFEEVESQEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFSEGKIKPDIIASKPLEQPVIMPDESYKYNDMQRIDGMIQKANALYLKGE
                     VEQALKVYEQVAVYNESLSNYNLGVSQMNENKFQEAFESFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFRYYIDLAQVYLPKEGKSKLYDYYLSLINYYKGYYPEALQMLQRTDV
                     EPYSDVAKYLSAKIYAKMDFDSKAIQQLNSQGNFESSLSLGLLYARIGEYAKAKVALS
                     TAMKIERDFNQSLAALTLVDIKTGNYQDMLARLQNSYDNDKDRYKILDTYKIQVRLNK
                     DLFNIAVAQNSFSKDLLKKQKDQFDLLFYFAPYQVFDSKQAALYIKKANVTDFVDDST
                     DAGIYLNISKALSSTNVKIANIINYALNQKLRLANQEFQKLIKDYPEHSILHYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCAKLIDIDTTKLYNEILDNIAADSN
                     FKANMQKSMLFLVNNNYISMLPYLDETKKDTPLSLIFEAIVAKNNNLNNQVDVKIAKL
                     RSELPEDILANILYFNSLNSNLNIKEYAQNAQIHFKNLKLDYRSVFGGPNIAREFYVN
                     LMHIAGLLNLERQKFKELINVSGAKDEGILQTLAYLDIFAQQYEEAYALYNSLIDDYG
                     AKDTKTLFLAAVAAVGANNPNSAIALLQLSKLTDKNNKESKAALGMLYQEVKNYEAAI
                     SQYKTLPNNFKSEFFTFDINNN"
     gene            complement(8429..9664)
                     /gene="serS"
                     /locus_tag="RJ267_000538"
     CDS             complement(8429..9664)
                     /gene="serS"
                     /locus_tag="RJ267_000538"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HDV7388420.1"
                     /translation="MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKIA
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSAKVNALENELEEIAHAIPN
                     IPDECVPVGEDENENVELKKVLNPPSFDFTPKEHFELGESLNWLDFMRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDD
                     EDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEV
                     WLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGKIHIPDVLKKYF"
     gene            complement(9675..10634)
                     /gene="trpS"
                     /locus_tag="RJ267_000539"
     CDS             complement(9675..10634)
                     /gene="trpS"
                     /locus_tag="RJ267_000539"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HDV7388421.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAM
                     TSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKV
                     NNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKE
                     AREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL"
     gene            complement(10631..11128)
                     /locus_tag="RJ267_000540"
     CDS             complement(10631..11128)
                     /locus_tag="RJ267_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HDV7388422.1"
                     /translation="MMKAKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN
                     QKVSEIFEQKGENFFREQEQKMADFFSSCEKACIATGGGFVNVSNLEKAGFCIYLKAD
                     FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEI
                     KKVIK"
     gene            complement(11115..12497)
                     /gene="der"
                     /locus_tag="RJ267_000541"
     CDS             complement(11115..12497)
                     /gene="der"
                     /locus_tag="RJ267_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HDV7388423.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQI
                     HIHSKKAMLIDSGGLDESDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFY
                     SLKKLGKPIALVINKVDNKKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFL
                     HEEFLIPDEEENLEDFLEYYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSH
                     SQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRF
                     KFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRAHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            12599..13531
                     /locus_tag="RJ267_000542"
     CDS             12599..13531
                     /locus_tag="RJ267_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDV7388424.1"
                     /translation="MLKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGIFFIVYLLKRSKAHKEGGYFWLLVFRGVVGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFVVFKENIGIKGWIGILIAFGGMLLIAQPWAHNLNHSGFDLKNSVIGI
                     TSGFLAALALTSVRELRKSYTTEQIAFSFILLGTLMPLISMISAEFFEPQHLDSLHLD
                     FILAPFVMPSLTAWLIIAIMGTLGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMIV
                     GIILGDNLPSTMVFLGIIGIIFGGLILVKNKGKK"
     gene            13528..14343
                     /gene="kdsA"
                     /locus_tag="RJ267_000543"
     CDS             13528..14343
                     /gene="kdsA"
                     /locus_tag="RJ267_000543"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HDV7388425.1"
                     /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQANPVSEVADVLQIPAF
                     LCRQTDLLVAAAKTKAKINIKKGQFLNPSDIKYSVKKVLQTRGIEDEGYEAAQRNGVF
                     VAERGASFGYGNLVVDMRSLVIMREFAPVIFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGIDGFFFETHINPCEALCDGPNMLNLTRLKNCVNTLLEIQNIIKENK"
     gene            14340..14804
                     /locus_tag="RJ267_000544"
     CDS             14340..14804
                     /locus_tag="RJ267_000544"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HDV7388426.1"
                     /translation="MNIIEGKLNLDSNTKIAIINARFNHIITDRLVEGAKDAFLRHGG
                     KEENLSLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL"
     gene            14804..15202
                     /gene="nusB"
                     /locus_tag="RJ267_000545"
     CDS             14804..15202
                     /gene="nusB"
                     /locus_tag="RJ267_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HDV7388427.1"
                     /translation="MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNF
                     TLNLYNGILDNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVIN
                     EAIELAKELANDNSPKFINGVLDALIKAKK"
     gene            15199..16038
                     /gene="pyrF"
                     /locus_tag="RJ267_000546"
     CDS             15199..16038
                     /gene="pyrF"
                     /locus_tag="RJ267_000546"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HDV7388428.1"
                     /translation="MKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFI
                     EELKKVDDFKIFLDLKFHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLS
                     KFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKK
                     IKEHTSSNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAV
                     CEKILNKIHRKNISENDIEQNYEVIQQKEWDMCNHFEEWIKTRPDKEHALKEFYAKCG
                     IKY"
BASE COUNT         5767 a         2575 c         2377 g         5473 t
ORIGIN      
        1 aatcttttag aacaacttaa aaataaaaat accaatcttt acgctatctt tttactaaaa
       61 gaaaatatta atgattttaa taatacaact ctccaaaatg aactaaaaca aatttataat
      121 aatgctcaaa caaacacttt acttaaaaat attattgcat tatctttagg ggataaatcg
      181 atatttttaa aaaattatga taaattatta gaagcttaca aacttttaga gcaaaataaa
      241 atcgaagaag ctaatgtttt actttctcag ataaaagaaa attcaagttt aaatcaaata
      301 gctaaaaacc tcaaacatta tcaaggcatt acacaatgaa aaaaatattt ttaacactat
      361 tttgtttaat atttctatgt gcttgtggca ccaaaagaca atattttgaa ccaaaacaaa
      421 ccgatggaga tttaagtcat aatagcaatt taaaaagtaa aatcgttgat tggaatctag
      481 tttctgcaaa acttagcaat aatacaacta tcttaaaaaa taatatctcc atagacaagt
      541 ttaaacttcc taaaaattat atgcttctag cttatcaaga tggggaatat tttactgcag
      601 ataataatgg aaatttaaaa atttttgaca attcttataa tgaaatttat aattttcaat
      661 ttgacgctag tgttgtagga gtagcttcta atggagatga tttagccctt gtacttgcaa
      721 acaatactat agttcttgca aatcgttctt tgggtattaa attcagtcaa accctaacct
      781 cagctccagc ccaagacagt cgtaccgcta atcctatatt tttagacaat atcatcgttt
      841 atccaacact agatggtaaa attttaattc tttcaagaaa caatcttcaa atcattaaag
      901 atgtggttat ttcagcagaa aattttttca acaatgtaat ccatctaagt gtaatcggag
      961 ataaacttat agcagcaaca gctaaaaaaa tcattgttgt aagccctgct agaactcttt
     1021 atcttgacgc tgacataaaa gatgttgcac ttagcgatga tggtattttt atactagaaa
     1081 aagatggcac tattattaaa actgattata acttaagaaa aattgcggaa aaaaaatttg
     1141 aatttgctat ttttgtaaaa agcaatatat acaataatta tttatatatt tttgaaaaaa
     1201 caggctatct tatcaaaatg aatctgaatt tagataatgc acaagtattt aaactttcag
     1261 aagctgttga taaaatttct ttcatgggaa atggtaaatt ttactacgga gataaaattt
     1321 tagatttgct atgataaaaa ttttagaaca aacaataaag gctttaaaat taaatttaaa
     1381 gccctatgac ttaagtatgt tgactagaaa aaaaagttat atttgtgcta aagatcaaaa
     1441 taacattctt tttatgtata caggaaaaac aaaattttta atgaaagatg ccttattttt
     1501 agaaaatcta gcacagcaaa ttaacataaa taacaaatat ttttttagta tggcttctct
     1561 ttgctctaaa gcaaaaaatc atctagaaat gaaaggattt aatatctatg ttgctctgtg
     1621 atattgggaa ttcaaatgct aatttcctag atgataacaa atattttact cttaatatag
     1681 atcagttttt agaatttaaa aatgaacaaa aaatttttta tatcaatgtc aatgaacatc
     1741 tcaaagaaca tttaaaaaat caaaaaaaat ttatcaatct tgaaccttat tttttatttg
     1801 atacaattta tcaaggatta ggaatcgatc gcatagcagc ttgttatact attgaagatg
     1861 gagttgttgt agatgcaggt agtgctatta caattgatat tatttctaat tctatacatc
     1921 ttggtggttt tatcttgcca ggtattgcaa attataaaaa aatttatagc catatttcac
     1981 cacgattaaa aagtgaattt aacactcaag ttagtcttga tgcattccca caaaaaacca
     2041 tggatgcttt aagttatggt gtttttaaag gaatttacct actgataaaa gatgccgctc
     2101 aaaataaaaa gctttatttc actggtggag atgggcaatt tttagcaaat tatttcgatc
     2161 acgcaattta tgataaactt ttaatctttc gaggaatgaa aaagattata aaagaaaatc
     2221 ccaatttact ttattaaaaa tgttacaaaa attctcatta atatcaaacc ttaatgaaat
     2281 ttaacttttt gtaaaacaaa ttcaattaaa cttctattta gaaaaaagtt tattaaaata
     2341 aaaaaaggaa aaacaatgag ccaacaagaa tttgatgtgc ttgtcatcgg agctggaatt
     2401 tcaggagcag cattatttta cgagcttgca agatatacaa atattaaaaa tattgctttg
     2461 atagaaaaat ataatacagc tgcaacatta aattctaagg gaacgagtaa ttctcaaacc
     2521 attcattgtg gagatattga aaccaattat actttagaaa aagcgcgaaa agtaaaaaga
     2581 acagctgata tgatagttaa atatggactc atgcaaaatg cgcaaaataa tttcatgttt
     2641 tctcatcaaa aaatggctct agctgttgga gatatagaat gtgattatat gaaaaaacgc
     2701 tatgaagaat ttaaagaact ttatccttat ataaaatttt tcgataaagc aaaaatcaaa
     2761 caaattgaac ccaaagttgt tttaggagaa gattgcaatc aagatagacc tgaaaatatc
     2821 tgcgccatgg gtgttgaaag cggcgaggtt tttacaactg tagattttgg gaaaatgagt
     2881 ataaatctaa tagaacaagc tcaaaaacaa aataaaaata ctttcgttgc ctttaatcaa
     2941 gaaattattc acatagaaaa aaaggatgat atttttatat taaaaacctc aaatcatcaa
     3001 gaataccatg ccaaaagcgt agttgtcaat gctggagcgc actctttata tttagcacat
     3061 aaaatgaact taggtatgga taagtcttgt tggcctgttg caggaagttt ttatttaacc
     3121 aaacaaaaac ttttaaatgg taaggtttat atggtgcaaa atcctaaact tccatttgca
     3181 gctcttcatg gagatcctga tttgcttgct gatatgaaca cccgctttgg acctaccgca
     3241 cttgttattc caaaactaga acgttatcat ggtctaaaat cagttccaga attttttgaa
     3301 gcactaaaac ttgataaaac tgttttaaaa gtaactttta atatgtttaa agatgcaaca
     3361 attagaaatt acatctttta taattatctt tttgaactac cttttgttga taaaagctta
     3421 tttgttaaag atgccaaaaa aatagtccca agtcttaaag caagcgatat ttattatgcg
     3481 aaaggttttg gaggcgtaag accgcaagtt attgataaaa ctaaaggaga attaatgcta
     3541 ggtgaagcaa gcatcacaga aacccctggt attattttca atatgactcc aagtcctgga
     3601 gcaacaagtt gtctaggaaa tgctgaaaga gatgcaaagc ttgtatgtaa ttacctagga
     3661 atggaattta acgaagataa attttcttca gaattattgt aatcattttg tttctatttt
     3721 tagctacaat aatttcaaaa ggagtttacc atgcttaaaa aaacaaaaat tgtagccaca
     3781 gtaggtccag caagtgaaaa ggaagaaatt ctacgccaaa tgattatcaa tggtgtaaat
     3841 gttttccgtt taaacttttc tcatggaaca catgagtatc ataaaaaaaa cttagatacc
     3901 ataagaagag tagctaaaga attgcatact cgtattggaa ttttacaaga cattagtggt
     3961 cctaaaattc gtacaggtga acttaaagaa ccatttgaat taaaaaaggg tgatagactt
     4021 gatttttatc gtgaaacaat tttaggggag aagattgctc aaaatcatta taaaatcagt
     4081 atcaatcaaa aatccatttt agatatgtta aaaattgatg aatatattta tctgtatgat
     4141 ggatcaattc gtgctaaagt agtaaatata gataatcaaa aaattgaaac cattatagaa
     4201 aatgatggtt ttttaaactc aaataaaggt attaattttc cgaatactaa aatcaatatt
     4261 gatgttatta cacaaaaaga taaaaatgat ttactttggg gtataaaaaa tgaagtagat
     4321 tttttagcaa tatctttcgt acaaaatgcg cacgatattg atgaagttcg tgaaatttta
     4381 gcacaaaata acgcaaaaat atctattttt gcaaaaattg aaaaatttga tgcagtagaa
     4441 aatattgatg agattattaa atctagcgat ggtataatgg ttgcaagagg agacttaggt
     4501 attgaggtac cttattataa agttcctaat atccaaaaag aaattataca aaaagcaaac
     4561 aatgcctcta agcctgttat tactgcgact cagatgcttt tttcattagc caaaagcaaa
     4621 accgccacaa gagctgaaat ttcagatgtt gcaaatgctg ttttagatgg aacagatgca
     4681 gtaatgctaa gtgaagaaag tgccgttggt atagatcctg caaacgctgt tgatataatg
     4741 tgccaaacta taatagaaac agaaaaacgc tatccatata acaaatttaa tgattttaat
     4801 gatttagaca atacagataa aatcatgcgt tcttcagctc atcttgcaac agatcttaac
     4861 gctgatgcta ttttttcttt aacaagtagc ggaaaatctg ctattaagat tgcgagatat
     4921 cgtccaaata tagaaatcat agcagtaggg cattctgaaa aaaccttaaa ctctttaagt
     4981 atagtttggg gagttaatcc tgcaatcttg gttaacaaaa gtaatgaact tacagaatta
     5041 ttaaaagact ctgtaagatc aagtgttgaa aaaggtttta tggatgaaga taaatgctat
     5101 cttctaactg caggctttcc aacaggagta gaaggtacta gcaatcttat ccgcattctc
     5161 aataaagagc aaattgctta ttatctacaa taaaacatta aattcctttg aaaataagga
     5221 atttaatgtc cttataaatt ttttaagtca aaagtcgata taaattaaag cctcacacaa
     5281 aggagcaaat atgcaagtga atactttttc aaatatcgct agcatggcac gaacacaagt
     5341 tagcaataag aaggcagatg atgctaagga aaacacaaaa gacaaaaatg ttcaaagtgc
     5401 taattctagc aaggatgtag ataaaaatac ccttgaaaaa ttaaatgcac ttggtggaaa
     5461 aggcattaca caaatttacc tagttcagtt tcaacagcaa acaatgaatg ctgtaatagg
     5521 ttcgagcaat gcccaaactg gactagatag tcttttaaat ggtgccaatt tagatactgc
     5581 gaaatctata cttacaaata ttgattttgc atccttaggc tacagtagca aaaatccact
     5641 tgatatgaat acagatgaac ttcaacaact tgtaagtgaa gatggttttt ttggagtgga
     5701 aaatacagcc aatcgcatcg cggattttgt tattaaaggc ggtggcgacg atgttgaaaa
     5761 attgaaaaaa ggtcttgaag gtatgaaaaa aggatttgag caagcagaaa aaatgtgggg
     5821 tggagaactt cctcaaatca gtcaaaatac aatagatgcg gcacttaaaa aagttagcga
     5881 tcgcattgat gaactaggcg gaaaaactct agatcttcaa gcttaactaa aaatgcttag
     5941 aaatttctaa gcatttttag ttgttattaa tatcaaaagt aaaaaattca ctcttaaaat
     6001 tattaggtaa agttttatac tgagatatcg cagcttcata gttctttact tcttgataca
     6061 acataccaag agctgcttta ctctctttgt tatttttatc tgtaagttta gaaagctgca
     6121 aaagcgctat agctgaattt ggattatttg cacctacggc tgctacggct gctaaaaata
     6181 aagttttagt atctttagct ccataatcat caatcaaaga attataaagc gcataagcct
     6241 cctcgtattg ctgtgcaaaa atatccaaat aagctaaagt ttgtaaaata ccctcatctt
     6301 ttgctcctga aacattaatc aactctttaa atttctgtct ttctaaattt aaaagccctg
     6361 caatatgcat taaattaaca taaaattccc tagctatatt tggcccacca aaaacactac
     6421 gataatcaag ttttaaattt ttaaaatgaa tttgagcatt ttgagcatat tctttaatat
     6481 ttaaatttga atttaaagaa ttaaaataca aaatatttgc caaaatatct tcaggcaact
     6541 ctgaacgcaa tttagcaatt ttcacatcta cttgattatt aaggttatta tttttagcaa
     6601 caatagcttc aaaaatcaaa ctcaaaggcg tatctttttt tgtttcatct aaataaggaa
     6661 gcatagaaat ataattatta ttaactaaaa ataacatact tttttgcata ttagctttaa
     6721 aattagaatc agcagctata ttatcaagaa tttcattgta aagtttagtt gtatcaatat
     6781 caattaattt tgcacaaaac atagcaaaag cacctgctaa gtaattttta ggattaagat
     6841 gatatgaact tgaaaaatgc ttataagcaa gttcataatt ttgcatttgg gcataagtta
     6901 aagccaaatt ataatgtaaa atactatgtt ctggataatc cttgataagt ttttgaaatt
     6961 cttggttagc aaggcgtaac ttctgattta atgcatagtt aataatattg gcaattttta
     7021 cattggtaga tgaaagagcc ttgcttatat taagataaat tcccgcatca gtactatcat
     7081 caacgaaatc tgtaacatta gcttttttaa tatataaagc agcctgctta ctatcaaaaa
     7141 cctgataagg tgcaaaataa aaaagcaaat cgaattgatc tttttgtttt tttagcaaat
     7201 cttttgaaaa agaattttga gcaactgcta tattaaaaag atccttattt aaacgaactt
     7261 gaattttata agtatctaaa atcttatatc tatctttatc gttatcataa gaattttgca
     7321 agcgcgctaa catatcttga taatttcctg ttttaatatc aaccaatgtt aaagccgcca
     7381 aactctgatt aaaatctctt tcaattttca tcgctgtact taaagcgact ttagctttag
     7441 catattctcc tattctagcg tataaaagac ctaaagataa actagattca aaattgcctt
     7501 gagaatttaa ttgctgtata gccttggaat caaagtccat ttttgcataa attttagcag
     7561 acaaatactt tgcaacatca gaatacggct ccacatctgt tctttgtaac atttgtaagg
     7621 cctcagggta atatcctttg taataattaa tcaagcttaa ataataatca tataattttg
     7681 attttccttc ttttggaaga tacacttgag ctaaatcaat ataatatcta aatttttcct
     7741 tatcattaag ctttaaagca caaacagcag cattgatagc agctacactt tgattttctc
     7801 cattggctat agctttcttg aagctttcaa aagcttcttg gaatttattc tcattcattt
     7861 gagaaacgcc taaattataa ttagataaag attcattata tacggcaact tgctcataaa
     7921 cttttaaagc ctgttcaacc tcacccttta aatataaagc atttgctttt tggatcatac
     7981 catcaattct ttgcatatca ttgtatttat atgattcatc aggcataata acaggttgtt
     8041 ctaaaggctt agaagctata atatctggtt taatttttcc ttcactaaaa gttaaataaa
     8101 aaagtgtaaa aactaaaata caaataatcc ccaaagataa acccacaaga gacataaact
     8161 tacgatcttt ataccaaggc gtaggctctt gactttcaac ttcttcaaaa gttgatacat
     8221 cttcaggcgc actttctctt gtaaatttaa aaccactttc actattttct tgaggtaatt
     8281 cttctggcaa tgatgcaaat tcttcatctt ctggagcttg cccctcttgc cctttaaatc
     8341 cctctaaact ctcatcaagt cttggttgat ttaagccatc ttcgggtttt tctagtatta
     8401 tatcttcttg ttcagccatc tatactcttt aaaaatattt tttcaaaaca tcaggaatat
     8461 gaatttttcc ttctttatct tgataatttt ccataatcgc taccaaggtt cttcctactg
     8521 ccaaagatga gccattaaga gtgtggacga gttcattttt tccttgttcg tttttatagc
     8581 gaattttagc gcgtcttgct tgaaaatcac gacaatttga aaccgagctg atctcacgat
     8641 atttattctg tcctggaagc cacacttcaa gatctacagt ttttgctgca ctaaaaccca
     8701 aatctccagt gcaaagcatc aaatgtctat gcgctaaacc taaagaactc agcaaatcac
     8761 ttgcacactc aagcatttca ttaaacacac tatcactttg ctcaggttta gtgatactta
     8821 caagctctac tttttcaaac tggtgttgtc ttataatacc ccttgtatca cgccctgcac
     8881 tgcctgcttc ttttctaaaa caagcactat aacaagtcat ttttataggt aaagtttcac
     8941 tcgctaaaat ttctccgctg taaagattgg ttactggaat ttcagaagtt gagatcaaat
     9001 acaaatcctc atcatctacc ttatacatat cttctttaaa ttttggcaac tgacccgtcc
     9061 caaacatagt agcaccattt accaaaaaag gtacattaac aaattcaaat ccacgacttc
     9121 tattaaaatc tatcatataa tttaccaaag cacggcttaa taaagctcct tcatttttaa
     9181 gcacacaaaa acgactttgt gaaattttta ccccacgcat aaaatcaagc caatttaaac
     9241 tctcgcctaa ttcaaaatgt tcttttggag taaaatcaaa gctaggtgga tttaaaactt
     9301 ttttaagctc cacattttca ttttcatctt cacccacagg cacacattca tcagggatat
     9361 ttgggatggc atgagcgatt tcctcaagct cattttctaa agcatttact ttagcgcttt
     9421 gctcattaat tttgctttta ttttcgctta attttgcttt taaactttct ttatcttcgg
     9481 ctgtagcaag ctctttactg aatttatttt gaaaagcttg aaattcttcc aaggctattt
     9541 tttctttttt taaacttgca aaaagttcag caagtttttt taagatattt tcatcaactt
     9601 ttttattttt taacttttta gccacttcat caaaattatt ttgcaaattt tttaaatcta
     9661 gcattttcta ctccttaaag tccgattttt tcataaattt tttgcatttt ttcttgggcg
     9721 atttttcttg cttttgtcgc accaaaatcc aaaatttctt tcaaatgcga aggcttttct
     9781 aaaagctcat tatatttttc tcttgcttct ttaaaataag catttacaag ctcgtttaaa
     9841 tatattttaa aatgtccata accctcacca cctttttcat agcgtatttg taattctttt
     9901 tgccctgatt catctaaaaa aagctttgcg attttaaaaa tattgcagtt ttcatgatct
     9961 tttggatctt ctaaagcggt actatctgta actatggaag aaatttgttt ttttaaggtt
    10021 ttttcactgc taaaaatatc tatagtattt tgataagatt tactcatttt tgctccatca
    10081 gtacccacaa ccacagctac ttcttcatta actctcgctt ctggaagggt aaaaatttca
    10141 ccccattcat tattaacttt taaagcaata tcgcgtgcga tttcaacatg ctggatttga
    10201 tcttttccta cagggacaat tcgtgtatca aaaagtaaaa tatctgccgc cattaaaaca
    10261 ggataagaaa aaagcccatg tgaagcacta agtcccttag caactttatc cttgtaacta
    10321 tgtgcacgct ctaataaacc cataggagta aattgcgata aaatccaata aagctccata
    10381 acttccttaa catcactttg caaccaaaaa acgctttttt gaggatctat accaaggctt
    10441 aaaaaagccg cagcagcttt taaggaattt tgtttaagtt tttctccatc ttgagaagaa
    10501 gtcatggcat gataattagc aataaacata aacatttggc ttttttcttg tgcatctacc
    10561 atttgcttaa tcgcaccaaa ataattacct atatgcaaat cgccacttgg ctgaaggcct
    10621 gttaatactc tcattttatc acctttttaa tctcgcttaa aagctcatct atatttttat
    10681 tttctatatt taaaataaaa tttgcctttt gttcatactt gcttaaacgc tcattatata
    10741 atttttttgc tttaatttca tcataaaata aaggtctttt agaaatttca tctttgtcta
    10801 aacgcttttt taaatattca aaatctgctt ttaaataaat acaaaaacct gctttttcta
    10861 aatttgaaac attaacaaaa cccccacctg tagcaataca agctttctca caagaactaa
    10921 aaaaatcagc cattttttgc tcttgttctc taaaaaaatt ttcccctttt tgttcaaaaa
    10981 tttcactgac tttttgatta aatttttgtt ctattaaaaa atcactatct aaaaaaacaa
    11041 gatctaaatc cttagctaaa gctcttgcta aagtgctttt tccagaaccc ataaatccta
    11101 taaaaacgat atttttagct ttcatcattt tctttactgc cctttttacg cgaagcaatc
    11161 actaaaggca caccttcaaa attaaattct tttctgattt gattttgtaa ataacgctta
    11221 tagctaaaat gcaaggcctt aggacgattc ataataagtg caatttttgg cggtgctaag
    11281 tcatattgta ctgcataata aattttaacc aatttcccat aatcatgcgg caaaggatgt
    11341 gctcttgtgg cattttctat caaggtatta agcttagaag tttggatttt ttgagtgaaa
    11401 ttttcaaaaa tttgcaaaat tttatcgagt aaaacatgca ccctttttcc acttaaagct
    11461 gatacgctaa tcacgggtgc gtaagctaga aatttaaaac gatcaagacg caattctttt
    11521 acagtcttat caaaatccat ctcactttta tcccatttat ttaaaacaat aatcacaccc
    11581 aaataatgct tagccacaag cccagcaatg cgttcatcaa gctcgttaaa gccctcatgc
    11641 gcatctaaaa ccaaaagtgc tatttgagaa tgagataaaa ttttttccgt gcgatttagg
    11701 gcaaagcgtt cgagtccttg aattttaccc ctttttctaa tacctgcagt atcaacaaat
    11761 tctatcactt tatctttatg aactacactt tcattaacag gatctatagt agttcctgca
    11821 atagaactta caacactgcg ttcttgttta accaaagcat ttaaaagact tgattttcca
    11881 acatttacac gccctacaat acccactctg atatgatttt gatcgacttc tttaaattga
    11941 aattcttttc cttcttcata atactctaaa aaatcttcta aattttcttc ttcatcgggg
    12001 attaaaaact cttcatgtaa aaatttttca agccattcat aaagttcatc taagcctaca
    12061 ttatgggtta ctgaaagatt aaagatttcc tttacgccaa aatttgcaaa ctcccaagcc
    12121 ctttcttcat cttttttatt atctacttta ttaatcacta aggctatagg ttttccaagt
    12181 ttttttaaag aataaaaaaa ctgtctatcc tcatcatcag gcgctaattt cccatcaact
    12241 agataaagta tgatatcgct ttctttagct acttttaaag tgtttttttt cacattttta
    12301 aaaagttcat cactttcatc aagccctcca ctatcaataa gcatggcttt ttttgaatga
    12361 atatgaattt gcgttttatt tgtatctcta gttgtgcctg aaatatcact tgtaatagct
    12421 attctttgtc ttgccattct attaaaaagg cttgattttc ccacatttgg cttacctata
    12481 agtataatgc tttgcatttt tttcctagaa aattatattt ttaaaattat ataaaatttg
    12541 gcttaatatt aagcaaaaaa agactagaat taacccagat tttagtcaag gaaaaaaaat
    12601 gctaaaagta atcaagcata atttaggaat ttatttcatg attttagcat gtttggattt
    12661 tgcacttatg ggagcttgtg caaaaattct tagcaaggaa atgagttcta tagaaattat
    12721 gttttttaga aatatcatag gaattttttt catagtctat cttttaaaac gatctaaggc
    12781 acataaagaa gggggatatt tttggctctt ggtatttcgt ggagtagtag gcacgctttc
    12841 actatatatg tttttctata atgtttcaaa tattacacta ggtggagctt ttgcttttca
    12901 aaaaactgct cctattttta ttactttaat agcttttgtt gtttttaaag aaaatattgg
    12961 catcaaaggc tggataggaa ttttaatagc atttggtgga atgcttttaa tcgctcagcc
    13021 ttgggctcat aatttaaatc attcaggctt tgatttaaaa aattcagtta taggtatcac
    13081 gagtggattt ttagccgctt tagctcttac aagtgtaaga gaacttagaa aatcttacac
    13141 tacagaacaa attgcctttt cttttatcct tttaggaacc ttaatgcctt taatttctat
    13201 gatcagtgct gaattttttg aaccacagca tcttgattct ttacatttag atttcattct
    13261 agcacctttt gtgatgccaa gtcttacagc ttggcttatc attgccatta tgggaacttt
    13321 aggcaccatt tatcaaattc atgtcactaa agcttatggt atcgctaaac aagcaggagt
    13381 ggttgccgga gttagttatc ttgatgtagt atttagtatg atagttggga taattttggg
    13441 agataattta ccaagtacta tggttttttt aggtataata ggcattattt ttggtggatt
    13501 aattttagtt aagaacaaag gaaaaaaatg aaaaaaatga tactcattgc tggtccttgc
    13561 gtgatagaaa gcaaagattt gatttttaaa gttgctgaac agttaaaaaa ttttaatgaa
    13621 aatccaaata tagaatttta tttcaaatca agttttgata aggccaatcg cacaagtatt
    13681 aattcttttc gaggtcctgg tcttgaagaa ggattaaaaa ttttacaaag cgtaaaagat
    13741 gaatttggta tgaaaatctt aaccgatata cacgaaagca atcaagcaaa ccctgtaagt
    13801 gaagtagctg atgtcttgca aattcctgct tttttatgtc gtcaaaccga tttacttgta
    13861 gccgcagcaa aaactaaggc aaaaattaat atcaaaaaag gacaattttt aaacccaagc
    13921 gatatcaaat acagcgttaa aaaagttcta caaacccgtg gtatagaaga tgaaggctat
    13981 gaagctgctc aaagaaatgg tgtttttgta gctgaaagag gggctagctt tggctatgga
    14041 aatttagtag tagatatgcg ttctttagtt atcatgcgtg aatttgctcc agttattttt
    14101 gatgctaccc atagcgtaca aatgccaggg gctgcaggtg gaagtagcgg agggaaaagc
    14161 gaatttgtag aacctttagc aagagcggca gcagccgtag gcatagatgg ctttttcttt
    14221 gaaacacata ttaatccttg cgaggcttta tgcgatggac ctaatatgct taatcttaca
    14281 cgccttaaaa attgcgttaa tacattacta gaaatacaaa atatcataaa ggaaaacaaa
    14341 tgaatattat tgaaggaaaa ttaaatttag actcaaatac aaaaattgct atcattaatg
    14401 caagatttaa tcatatcatc acagatcgcc ttgtagaagg agcaaaagat gcttttttaa
    14461 gacacggggg caaagaggaa aatctaagcc ttatacttgt tcctggtgct tttgaacttc
    14521 cgtatgcgtt aaaaaaagct atagaaagca aaaaatttga tgcaatttgt tgcgtaggcg
    14581 cagtaattcg tggctcaact ccgcattttg actatgtttc agcagaaacc accaaaggca
    14641 tagccaatgt gagtttaaat cataatatcc ctgtaagctt tggtgtttta actacagata
    14701 caatagaaca agccatagaa agagctggaa gcaaagcagg caataaaggc tttgaagcta
    14761 tgacaactgt aatcgagatg ttaaatttaa gcaaggagct ttaatggcaa cgcgtcatca
    14821 agttcgccaa agcgtcatct ccttacttta tgcttttgaa ttaaattctc aaaacaacgt
    14881 ttttgtagat gaaattttag atgaaaaaaa aatacgcaat gaacaaaaaa attttacttt
    14941 aaatttatat aatggaattt tagataattt aaacaatatt gatgaaacct taaattcatt
    15001 tctaaatgat aatcaaatta cagctttagg acatgtagaa agagctatac taagacttgg
    15061 agcttatgag ttacttttta ccgatactcc tagcgccatt gtcatcaatg aggctataga
    15121 acttgctaaa gaacttgcta atgacaattc tccaaaattt ataaatggag ttttagatgc
    15181 cttaataaag gctaaaaaat gaagctttgt gtcgcacttg atctttctac aaaagaagaa
    15241 tgcttacaac ttgccaaaga attaaaaaat ttagacatat ggttaaaagt aggtttaaga
    15301 gcatatttaa gagatggttt taaattcata gaagaactta aaaaagttga tgattttaaa
    15361 atatttcttg atcttaaatt tcatgatatt cccaacacta tggcagatgc ttgcgaagaa
    15421 gtatcaaaac ttggtgttga tatgatcaat atccacgcaa gtgctggaaa aatagccata
    15481 caagaagtta tgacacggct tagcaaattt tcaaaaagac ctttagtttt agcagtttct
    15541 gctcttacga gttttgatga agaaaatttc tttagtattt atagacaaaa aattgaagaa
    15601 gctgtaatta atttttcaaa aatatcctat gaaaatggac ttgatggtat ggtatgctct
    15661 gtttttgaaa gcaaaaaaat taaagagcac acaagttcaa atttcttaac ccttactcct
    15721 ggaattcgtc cttttggaga aacaaatgat gatcaaaaac gtgttgctaa tcttgcaatg
    15781 gctagagaaa atttgagtga ttatatcgtt gtgggaaggc ctatatataa aaatgaaaat
    15841 cctagggctg tatgtgaaaa aattttaaac aaaatacaca gaaaaaatat aagcgaaaac
    15901 gatatagagc aaaattatga agtaattcag caaaaagaat gggatatgtg taatcacttt
    15961 gaagaatgga ttaaaactcg gcctgataaa gaacatgctt taaaagaatt ttatgctaag
    16021 tgtgggataa aatattgaat tatcaacaat tagaatgcga ttactttaat ctttacaatc
    16081 agtttcttag cgtggatttt caaatttcat tatttgaaaa agatcataaa ggtttaatta
    16141 aagattttat atttttttat tatcaaattt taaaacaaaa agacttgagc ta
//
LOCUS       DAPIWQ010000024        16108 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.024, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000024 DAPIWQ010000000
VERSION     DAPIWQ010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16108)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16108)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16108
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.024"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(49..4602)
                     /gene="rpoC"
                     /locus_tag="RJ267_000547"
     CDS             complement(49..4602)
                     /gene="rpoC"
                     /locus_tag="RJ267_000547"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HDV7388429.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMGAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIVKSILPDFVPENSWNKVLKKKDIAALVDYVYKQGGLE
                     ITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLAEDVIDPITNSVLF
                     AEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEGKNI
                     VANRRNAAVLLVEPKIKTPFKGVINIENIHEDVIVSIKDKKQEVKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVPNRIPFASEILVEDGEPVVQ
                     NIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRHYIPRES
                     KIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSAD
                     EQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYHLEPKTVIFVHDGDKIAQAD
                     ILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
                     QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISE
                     IQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIR
                     MGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVI
                     LGRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(4595..8731)
                     /gene="rpoB"
                     /locus_tag="RJ267_000548"
     CDS             complement(4595..8731)
                     /gene="rpoB"
                     /locus_tag="RJ267_000548"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HDV7388430.1"
                     /translation="MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     DIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLEESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLVGLRLGDQIQEIFDRKQKDFLKELRAKILEICSIPRLANEKEFIKSLSDEELLNYA
                     RDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(8840..9217)
                     /gene="rplL"
                     /locus_tag="RJ267_000549"
     CDS             complement(8840..9217)
                     /gene="rplL"
                     /locus_tag="RJ267_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HDV7388431.1"
                     /translation="MAISKEDVLEYISNLSVLELSELVKEFEEKFGVSAAPVMVAGGA
                     VAGGAVAAAEEKTEFDIVLTDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKAEAEEAKKQLEEAGAKVELK"
     gene            complement(9238..9717)
                     /locus_tag="RJ267_000550"
     CDS             complement(9238..9717)
                     /locus_tag="RJ267_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HDV7388432.1"
                     /translation="MTRSEKVEIIAKLEEGFKASEAIVVCNYRGLSTKKLEELRNNAR
                     ENNVKVQIVKNTLANIALNNSGKTGLVLKDTNIYLWGEDQLSVSKVAAKFEENNDKFE
                     IKTAHIEGEVADVAKVKALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(9869..10570)
                     /locus_tag="RJ267_000551"
     CDS             complement(9869..10570)
                     /locus_tag="RJ267_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HDV7388433.1"
                     /translation="MAKIAKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(10625..11050)
                     /gene="rplK"
                     /locus_tag="RJ267_000552"
     CDS             complement(10625..11050)
                     /gene="rplK"
                     /locus_tag="RJ267_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HDV7388434.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(11076..11609)
                     /gene="nusG"
                     /locus_tag="RJ267_000553"
     CDS             complement(11076..11609)
                     /gene="nusG"
                     /locus_tag="RJ267_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HDV7388435.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(11619..11798)
                     /gene="secE"
                     /locus_tag="RJ267_000554"
     CDS             complement(11619..11798)
                     /gene="secE"
                     /locus_tag="RJ267_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HDV7388436.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVVAVISLFL
                     ALVDWLMSSIVSAIV"
     gene            complement(11817..11892)
                     /locus_tag="RJ267_000555"
     tRNA            complement(11817..11892)
                     /locus_tag="RJ267_000555"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11857..11859),aa:Trp,seq:cca)
     gene            complement(11905..12063)
                     /gene="rpmG"
                     /locus_tag="RJ267_000556"
     CDS             complement(11905..12063)
                     /gene="rpmG"
                     /locus_tag="RJ267_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDV7388437.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(12116..13315)
                     /gene="tuf"
                     /locus_tag="RJ267_000557"
     CDS             complement(12116..13315)
                     /gene="tuf"
                     /locus_tag="RJ267_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HDV7388438.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(13384..13458)
                     /locus_tag="RJ267_000558"
     tRNA            complement(13384..13458)
                     /locus_tag="RJ267_000558"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13424..13426),aa:Thr,seq:ggt)
     gene            complement(13563..13639)
                     /locus_tag="RJ267_000559"
     tRNA            complement(13563..13639)
                     /locus_tag="RJ267_000559"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13603..13605),aa:Gly,seq:tcc)
     gene            complement(13646..13731)
                     /locus_tag="RJ267_000560"
     tRNA            complement(13646..13731)
                     /locus_tag="RJ267_000560"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13695..13697),aa:Tyr,seq:gta)
     gene            complement(13781..13856)
                     /locus_tag="RJ267_000561"
     tRNA            complement(13781..13856)
                     /locus_tag="RJ267_000561"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13821..13823),aa:Thr,seq:tgt)
     gene            complement(13948..14709)
                     /locus_tag="RJ267_000562"
     CDS             complement(13948..14709)
                     /locus_tag="RJ267_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDV7388439.1"
                     /translation="MSILKIENLQKYYGSHHALKDINLEVKAKEVVVILGPSGCGKST
                     LLRCINGLEEIASGNIYIDNEKIDKDFKEWPRMRQKVGMVFQSYELFEHLSVEENILL
                     GPMKVQKRKKDEVLKEAKIWLEKVGLLHKIHAYPRELSGGQKQRIAIVRSLCMNPELM
                     LFDEVTAALDPEIVREVLEVMLNLAKEGMTMLIVTHEMGFAKAVADKIIFMDEGKIIE
                     ENDPKSFFKNPKSERAKKFLNLFDYHNIDKNNIGL"
     gene            complement(14711..15367)
                     /locus_tag="RJ267_000563"
     CDS             complement(14711..15367)
                     /locus_tag="RJ267_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7388440.1"
                     /translation="MLELLNTDTLLRLWQGLFVTLEISFISIIITSIGGLFLGILMSF
                     KNTYIYAFCRLGLEFVRVMPLLVWLFVVYFGFPRWFGWDLSSVSAAIIVFSIWGCFEM
                     MDLVRVSLQSIPKHQYESASSLGLNTVQSFAYVIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFHNRNDFAPFIIYGLIFFIFFILCYPITLYSRKLEKKWS
                     "
     gene            complement(15360..16061)
                     /locus_tag="RJ267_000564"
     CDS             complement(15360..16061)
                     /locus_tag="RJ267_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7388441.1"
                     /translation="MDFDFILAQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYF
                     KIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFNIHLEQIPPLDLICLSVEETLRP
                     SFACAIVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAI
                     SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILP
                     LSFILLKFEKRLLHA"
BASE COUNT         5032 a         3316 c         2148 g         5612 t
ORIGIN      
        1 ttagatacac tgtattaata tagccccgaa gggctataaa atagagtttt attcttgttc
       61 tttaagtttt aaattttgtt cgccataaag ccctgttcca acaggaatca ttctacctag
      121 aataacattt tcttttaaat cttctaagta gtcaaattta cctgctatac ttgcttcagt
      181 taaaactttg gtagtttctt ggaatgaagc cgcagaaatc acactatcac ttccaatcgc
      241 tgctcttgtt acacctaaaa gcacaggctc ggcaatagct ggttctccac ccattctaat
      301 gattctttca ttttcttcac ggaatttacg tcttgaaacc aaatcacctt caataaattt
      361 cgtatgtcca ctatctacaa cttttacttg tcttagcatt tgagaaacga taacttctat
      421 atgtttatca gaaatcacaa caccttgtcc gcgataaact tgctgaattt cagaaatcaa
      481 ataataatgc aaggcttttt cacctaaaat tttaagcaca tcatgactcg aaacaactcc
      541 atctgtaagt ttttcacctg catgaataaa ctctccatct cttacttgaa tatgttttga
      601 tttgtcgatt aaatactcag cacttgttcc atcttctgct tggataataa ttctttcttt
      661 agaacgcaaa ggcttatcaa aacgaacaac accatcaatt tctgcaatca cagccgcatt
      721 ttttggtttt cttgcttcaa aaagttcaga aactcttgga agacctcctg taatatcctt
      781 tgatttagct gctgcttttg gagtttttgc taaaatatct gcttgagcaa ttttatcgcc
      841 atcatgaaca aaaataacgg tttttggttc aaggtgataa cgcacagctt tatcaccttt
      901 tcctgcaatt accaaagttg gtctaactcc gctaggtaaa tactcattaa ttactaaaga
      961 acgcttacct gtagcttcat caatttgctc atcggcacta taacctgctt caatatcctc
     1021 aaagcttaca acaccatcaa tttctgcaat gatagtatta ttataagcat cccattctgc
     1081 aatcactttt ctttcttttt taggagcact tgcaatgata gtatttgcgt catcgatttt
     1141 ttcactatcg ttaaattcta tcttagattc tcttgggata tagtgtcttt ttgcttctct
     1201 atcattttca tcagcaatca ctacaaagaa tcctttttct ttaacaatat cacctttttt
     1261 aacatttttt actctatcta aaccatcgcc tttaaggatg taaaatttga gtgttccttt
     1321 ttcgcctgct ttgatatttt gaactacagg ctcgccatct tctactaaaa tttcactcgc
     1381 aaaaggaata cgatttggta cattccaacc ctctttaatc acttctacga tactttcatt
     1441 ttcttctact tgcatgccgc tttgatatgg caaataaagt tttccatcta tactgccact
     1501 tacacctgct aattcatttg gtttagcaag atcgtatttt cttaatatgt attttacttc
     1561 ttgtttttta tctttaatag aaacaatcac atcttcatga atattttcta tattaatcac
     1621 acctttaaat ggagttttga tttttggctc cacaagtaaa accgccgcat ttctacgatt
     1681 tgctacgata tttttacctt ctttgttttt ataagtttta agattataaa atcttataaa
     1741 accttctttt tgtgcgctta cttgtctatc ttgtaaatcc gtacttgcag ttcccccgct
     1801 atggaaagtt cttagagtta gctgcgttcc tggttcaccg atagattgag cggaaataat
     1861 tcccactgct tcgcctggtt ttactaattt accttcacca agattgatac cataacattt
     1921 tgcacaaatt ccttttttag ctttgcaggt aataggagtg cggatattga cactttttat
     1981 accgctttcg ccaagaattt ttgctttttc ctcatccatt aaagtacctt ccgcaaaaag
     2041 cacagaattt gtaataggat caatcacatc ctcagctaaa accctgccta aaattctttc
     2101 ttctaaagtt tctataatag aactatctgc ggtaatttca ttgatttcaa caccctcatg
     2161 tgttccacaa tcttcaatgg taatttttac attttgtgca acatcgatga gttttcttgt
     2221 caaataaccc gcatttgctg ttttaagagc ggtatctgca agaccttttc tagcaccgtg
     2281 agttgaaata aagtattcaa gaacatttag cccttcacgg aaatttgaaa taataggcgt
     2341 ttcgataata gaaccatcag gtttggtcat aagtcctctc atcgcagcaa gctgagaaat
     2401 ttgagctgca ctacccctag caccagaatc tgccatcata taaatagagt taaaaccttc
     2461 tttatctttt tctacaagct tcatcatttc ttttgaaaga acattgtttg tacttttcca
     2521 aatatcaatg attttattgt atctttcccc tgaagtaatc aaaccgagat tataagaatt
     2581 ttgaatttct cttacttgtt tttttgcttc atcgatagct ttttgtttat cattaggaac
     2641 aataatatct gcaatcgaaa ttgaaatacc tgctttagtt gcatattcaa aacctaaatt
     2701 tttaagtcta tctaagaaac ttgctgtaat ctctaaacca ccttgtttat aaacataatc
     2761 tacaagcgca gcaatgtctt ttttctttaa gactttattc caactatttt caggcacaaa
     2821 atcaggcaag atggatttaa caatcaatct tcctgctgta gtggtaatct ttctaccatc
     2881 taccatagtt tgtatgctcg catgaatatc caaacacttg ctttcaagtg ccatcatcac
     2941 ttcatcaatg cctgtacaaa ttttatgcga acctttagca cctgcttttt ccaacgaaag
     3001 ataataaatt cctaaaacca tatcttgcga tggaacggtt acagacttac cgcttgctgg
     3061 taaaagaata ttcattgatg aaagcataag cactttacat tctgcaatag cctcttgaga
     3121 aagcggtaca tgcactgcca tttgatcccc atcaaagtct gcgttaaatg ctgcacaaac
     3181 caaaggatga agttgtatag ccttaccttc cactaaaaca ggatgaaaag cttggataga
     3241 aagcttatgc aaagtaggtg cacggtttag cataacagga tgtcccttta ctacctcttc
     3301 taaacattcc caaacttcat tggttttatt ttctatcatt tttttagctt gttttactgt
     3361 ggttgcataa cctttttctt caagcttagc taaaagatgt ggcttaaaaa gctctaaagc
     3421 cattttttta ggtaaaccgc attgatccat tctaagtttt ggacctacaa caataacgct
     3481 acgacctgag aaatccaccc ttttacctag tagattttgt ctaaaacgtc cttgtttccc
     3541 tttgatgatt tcacttaaag atttcaatgg gcgtttattt gctcctttta cagcattagc
     3601 acgacgaccg ttgtcaaaaa gcgcatcaac agcctcttga agcattcttt tttcatttct
     3661 gataatgatt tcaggtgcat caagttccat aagtttttta agacgtgtat ttctattgat
     3721 aacacgacga tataagtcat tcacatcaga aactgcaaat ttcccaccat ctaaagccac
     3781 taaaggacgc aaatctggcg gtaaaactgg aagatttgta atcatcatcc attcaggacg
     3841 atttggtaca gcttcgtcgc tatcggtatt ggcgtttaaa tttgaattta agaaattttc
     3901 tacaactttt aagcgtttaa tgatagtttt tttcttagcc tctgaatttg tagcccccat
     3961 ttcttcttta agctgattta aaagcgctac aagatctaaa tttgcaagta aatcacgaac
     4021 aacttctcca cccattcttg ctttaaagcc gctattttca tagcgttgca ttaaattttg
     4081 atattgctct tcgttcaaaa catcgcaata ttccactttt ttagtacttt cattatcata
     4141 gaaagcatca cctgggtttt caacaatata agcttcataa taaagcacgc gctcaagatc
     4201 tttcatctta acacccaaaa gcgttcctat acggcttgga agagaattaa cataccaaat
     4261 atgagccaca ggagttacaa gctcgatatg ccccattcta gaacgacgca cttttgaatt
     4321 tgctacttca acaccacatt tttcacactt aacgccttta aaacgcattt ttttgtattt
     4381 accacaaaga cactcataat ctcttatagg tccaaaaatc tttgcacaaa aaagcccatc
     4441 tctttcaggc tttaaggttc tataattaat agtttctggt ttttttactt ctccataaga
     4501 ccatgatttg attttttcag gacttgcaag tcttagttga aatgcttcaa aatctctagg
     4561 tcttgcatct tctttaattt ctattacttt aaatttactc attatcttca tccttatcaa
     4621 aaatctcaac atctaaagca agagatttaa gctcattggt taatacaaaa aatgtttcag
     4681 gaattcctgt tgctggaaca ttttcacctt ttgtcaatgc tttataggca ctaaatctac
     4741 cttctacatc atctgatttt atggttaaca tttctcttaa agtgtgagcc gctccataag
     4801 cttcaagtgc ccaaacttcc atttctccaa atctttgtcc cccaaagagt gctttaccac
     4861 ccacaggttg ttgggtaacc aagctataag gtcctgtact tcttgcatga actttttcat
     4921 caaccaagtg atggagtttt agcatataca tacatcctac atgaacacgc tctgcaattt
     4981 tttcccccgt gcgtccatca taaagttctg ttttgccatc catatctatc ttagccattt
     5041 taaaaagctt gctaaattct tctatattta caccttcaaa aacaggagta gaaaatttaa
     5101 ctcctttact ccagtctcta gcatagttta aaagctcttc atcgcttaag cttttaataa
     5161 attctttttc gtttgcaagt cttggaatag aacaaatttc aagtattttc gctcttaatt
     5221 ctttaagaaa atctttttgc tttctatcaa aaatttcttg aatttgatcc ccaagtctaa
     5281 gtccaactaa acctaaatga ctttctaaaa tttgacctat attcatacga cttggaacgc
     5341 caagtggatt aagcgcaata tccacgctct taccatttgg caaataaggc atatctactt
     5401 caggaactat agttgaaact atacctttat ttccatgacg tcctgccatt ttatcaccga
     5461 ctttaagctt tctttttgta gcaatataaa ctttaacaag cttaattacc ccacttggta
     5521 aaatatcatc tttttctaaa atttcaagct tttcatcgtg ttctgctttt aattttttct
     5581 tctcattttg gaaatgattt tttaaatcat cgtattcttt ttgaatctct ttagaataag
     5641 ctttaatcaa agttgttaaa gtaaaacgat tgattttttc aagttcgcta atatctgcag
     5701 tttgtccttt tttataattt ttatctccaa ttttttgatc gctatttaaa gaggctttgg
     5761 aaagaagagc acaaacacga agcatttctt ctctatccat catcaaaagt ctatcatgat
     5821 gctctttttc taaagccatt ttttctttat cataagattt tattgcgcga tcatcttttt
     5881 catagccttt tttagtgaaa attttaacat ccacaacaac accctctaaa gaagcggttg
     5941 cataaaggga tttattcaca acatgtcctg ctttttctcc aaaaatcgct cttaaaagtc
     6001 tttcttcagg agttggttta acctcacctt ttggagaaac cttacccacc aaaatcatac
     6061 ctggtttgat atgggtacca atttttgcaa taccgctctc ctcaagatgc gcaacatctt
     6121 cttcttttac atttggaata tctttggtaa tttcttctat accgtctttt agttctcttg
     6181 cttcaatttc tttttcataa atgtgcacgc ttgtaaaagt atcttcacga ataattctct
     6241 cacttacaac tatagcatcc tcatagttat aaccattcca aggcataaaa gcgattaaag
     6301 catttttacc tatagcaagt tcgccttgat ccatagaagg accatctgcg ataatttgtc
     6361 ctgcttttac tatatcacct tttttaacaa tagggtgttg aatataattt gtattttgat
     6421 tggttcttaa atttttctcc atagtgtaat ggtcaataaa tggaccttta tcatcttcac
     6481 ctaaaatgaa aatgctttta ttatccactt tctcaaccac accgccacgc tttgctttaa
     6541 cagcttccca agcatcacgc gcaataattt gttccatacc tgttcctact atcggagctg
     6601 aagcagtaag aagtggcaca gcttgacgtt gcatgtttga acccattagc gctctgtttg
     6661 catcatcgtg ctctaaaaac ggaatcaaag aagctgcaac tccaacaacc atacctgagc
     6721 aaagatcgat taattgcact tcttcgcgtc ttgcaagtat agtttcacca tcttgcctag
     6781 cctcaacaaa ttcttctact atattgcctt tagcatcaac cttagttgaa gctggtgcga
     6841 taaacaagcc ttcttcttgt gtcgctgtaa gataaacaac ttcattagtc actttaccat
     6901 ttacaacttt tctatatggc gcttcaacaa agccaagttc atttactttt gcataagtag
     6961 aaagagtgtt aatcaaacca atattttgac cttcaggtgt ttcaactgga caaattctac
     7021 cataatgtgt cgcgtgaaca tcacgcactt caaaacctgc tctttctttt acaagtccac
     7081 cttcaccaag cgctgacaaa cgacgcttat gagtaacctc gcttaaaggg ttggtttgat
     7141 ccataaattg cgaaagctga cctcctgtaa aaaattcaat gatagttgta gtaatcattt
     7201 taggattgat taaatcataa ggcattactt tatcaagatc cgcatttaaa gaagtaaatt
     7261 tatctctgat cgccttttgc atttttgcaa gacctaaatg aagttcattg gctaaaagtt
     7321 cacctataga acggatacga cgatttccta aatgatctct atcatcaata tgtcctttac
     7381 cattttttac tttaattaaa tattttgcag ttttaataat atcttcatta gtcaaaacag
     7441 taacatactc aggtacttca agacctaatt tatggttcat tttcatacga cctaccttgg
     7501 taagatcgta tctttcagga ttgaagaata aatcatttac aaaagccttc gctgcatctt
     7561 ttaccacagg ttcacctggg cgcataactt tgtaaattct aatcgcagct aaatcatttt
     7621 catcatcgat attttcactt tgtttaagaa gttttagagt ttctccatct tgggcaaagg
     7681 agttaataat cgctgcatca acgccattag ccaagtcatt tgctatatca aaactttttt
     7741 gctctttaat cttagcaagc ttactctcat ctaacaaagt taaagaatca aataaaacct
     7801 ctccactttc tttatcaata ataggatttg ctaaataacg attaagtaaa atttctacag
     7861 gatattctat ccattttaaa ccgtctttaa taagctgttc tgcttttttc tttgtaagtc
     7921 tttttccagc ttgatgaacg atttttcctt tttcatcttt aatatcatat tctattctat
     7981 ccataaaatc atttggatta aattctgtta aaaatttatc ttttttcaca tgtatagtct
     8041 gaataggata aaacaactta ataatatctt gttttttata ccctaaagct ctaaaaagca
     8101 tagttacagg aacttttcta cgcttattga ttcttacata caaaacatct ttggcatcgt
     8161 attcaaaata aagccacgaa ccacgatcag gaataatttg tgctgtataa acaagcttat
     8221 ttgcaaccgt tgaactttct tcttctttaa aaataacacc agggcttcta tgtaattgat
     8281 ttacaaccac tctctcaacc ccgttaatga taaaagatac acgatctgtc attaaaggaa
     8341 tttcgcggat ataaatttct tgttctttaa tatcttttac gccaactttt tcccctgttt
     8401 tttcatcttt ttcatgcaga gtaagacgga ttttcatttt taaatttaca gaataagtca
     8461 aacctctttc catgcattcg cgaatggtat attttggctt gcctatttca ctactaacat
     8521 attcaagact caatctattt tgcggatcat gaataggaaa aattgattta aaaacttttt
     8581 ctataccact ttcaccatta tcaagattta aaaaataatc aaaactcttt ttttgtaatt
     8641 gtagaagatt tgggatttct atttgttttg aaatgtttga gaagtctact cttaaacgat
     8701 ttcctaattt attatctaac atatcgcaca tacctcatgg taaattttgt aaatttaaaa
     8761 aagaagacct aaaaattagg taaaaataaa aaaagaagac ttgccttggc aaatcttctt
     8821 ctaactttaa agcttaaaat tacttaagtt ctactttagc accagcttct tcaagttgtt
     8881 ttttagcttc ctcagcttca gctttagcca caccctcttt tagagttgaa ggagtttgct
     8941 caactgcatc ttttgcttct ttaagaccaa ggcctgtaag agcacgaacg attttaataa
     9001 cttcaatctt tttagcaccg ccatcagtta aaacgatatc aaattcagtt ttttcttcag
     9061 cagcagctac agcaccacca gctacagcac caccagctac cattacagga gcagcagaca
     9121 caccaaattt ttcttcaaat tcctttacaa gttctgataa ctcaagaaca cttaaatttg
     9181 aaatatattc taatacatct tctttagaga ttgccatttt ttatcctttt atttaattta
     9241 ttcagattct tttttatttt taagcgcatt taaacctatt gtgaaattgg taattggcgc
     9301 attccaaact tgcaaaagca tagcaagcaa ctcattgcgt gaaggcattt tagcaagagc
     9361 tttaacctta gcaacatctg caacttcgcc ttcaatatga gctgttttga tttcaaattt
     9421 atcgttattt tcttcaaatt tagcagctac ttttgaaaca cttagctgat cttcgcccca
     9481 aagataaata tttgtatctt taagaactag acctgtttta ccggaattgt taagagcaat
     9541 gttagccaaa gtatttttaa caatttgaac ttttacattg ttttctcttg cattatttct
     9601 aagctcttct agtttttttg tgctaagacc tctgtaatta caaactacaa tagcttcact
     9661 agctttaaaa ccttcttcaa gtttagcaat aatctcaact ttttcgcttc tagtcacatt
     9721 ttctcctttc cgattgagat ttcaagtaga gtggaaatcc aattaagctt acgcctcgac
     9781 tatcttcaat ctaaaataaa catttcaaaa aatcaaaaat tttttcaaat gtttatttta
     9841 aaacaaaaga gttgcaaaaa agcaactctt atttcatatc aagcaattct tgtgtttcaa
     9901 gctttacaga agggctcatt gtcaaagata aagccgcatt tttaatatat ctacctttag
     9961 ctgcagcagg tttatgtttg ttaattgcct ttacaaaagt gctaacatta tcccataatt
    10021 gttctttgga aaaacttact ttaccaagac ctgcatggat atttccttgc ttatcaacac
    10081 ggaaatttac ctgaccactt tttgcattat taactgcttg agcaacatcc atagtcactg
    10141 ttccagtttt aggatttggc attaaacctt ttggccctaa aattctacca actttaccaa
    10201 caagtcccat taaatttgga gtagcaatca aaacatcaaa attcatatta cctttttgaa
    10261 tttcttctac taaatcatcg ctacccacaa tatctgcacc agcatttttc gcttcatcag
    10321 cttttgcgtc ttttgcaatt acagcaacac gaactttttt acccgttcca gcaggtaaaa
    10381 caacagatcc tcttaccatt tgatctgcat gtcttggatc aacattaagt tttaaagcaa
    10441 tttctacagt ctcatcaaat ttagcagact ttaaagtctt tattgtatca attgcatcgc
    10501 ttaaagcata ctctttattt gaatcaattt tttgtgataa ttcttttaat ctttttgcta
    10561 tcttagccat ttattttctc cgcattttaa agtgctaccg ccttttacct tggcggtgaa
    10621 aggattaatc tacgatttca acacccatag aacgagctga acctgcaata attttagcag
    10681 cttgatctct atctttagta tttaaatctg caattttctt atctactatt tctaaaactt
    10741 gagcacgagt taacttaccc accttatttt taagtggatt atccgtacct ttagaaattc
    10801 cagctgcttt tttgatcaaa tccgtagctg gcggttgttt tgtaataaaa gtaaaacttt
    10861 tatctgcata aacagtgata acaacaggga tattaaaacc tgccatatct tttgttcttt
    10921 cattaaaagc cttacaaaac tccataatat taacaccttg ctgacccaaa gcaggaccaa
    10981 caggtggtga tgggtttgct tttgtggcag caatttgcaa tttaatttcg cctacgactt
    11041 ttttagccat aacaaatctc cttacttgat ataaattaaa ttattttctc aacttgagaa
    11101 tataagatct ccactggagt tgaacgtcca aaaatagaaa catttaattt taataaacca
    11161 cgaaccatat catactcttc tacaattgca gtaaagtttg caaatggccc ttctgtgatt
    11221 ctcacatttt ccccttcttc aaaagaaatc tttggtttag gcgctgcacg attgtgaact
    11281 ttttccaaaa tcaaattaat atctttttct gttaaagggg ttggcttttt ggattctcca
    11341 ataaaacgac caacctttgg aagagattga atgcgatgcc aaagctctgt atttaaatca
    11401 agaagtgcaa aaacgtatcc tgaatacaaa cttctttcgc taatcttctc ctttccattc
    11461 ttaaattcaa taacatcttc agttggaaca acaatttctt taagttgttc ttcaattccg
    11521 ttatctttta ctaaattttc aatggctctt ttaactgcca tttcactgcc agcataagtt
    11581 tgaattgcat accatttatg agtactcatt tactctcctt atacgatcgc agaaacaata
    11641 gaggacataa gccaatccac taacgccaaa aacaaagaaa tcaccgcaac aaccacaaaa
    11701 actgtaatat aggcatttct tacctgttct tttaaaggaa aaattacttt ccttaattcg
    11761 gcttttgata atttaaaata agttattaat ttttccattt atttaaacct taattatggc
    11821 agggcaagag ggattcgaac ccccaaccat cggatttgga atccggcgct ctaccgttgg
    11881 agctattgcc ctaagggcgc aagcttaact ttttagctta acttctttgt gaagtgtatg
    11941 tttttttaat cttgggcaat atttttttaa ttctaatttt tcagtagtat ttttactatt
    12001 tttataggtg ctataattaa tatcaccaca ttcttcacac tttaaaccaa ctttaattct
    12061 catttcaatt ttccttaaaa aattaaagcc aagcttttaa cttggcttta ttaaattatt
    12121 taataatttt agaaacaaca cctgaaccaa cagttttacc accttcacga atagcaaaac
    12181 gagttccttc ttcaagtgct actggagcga tcaagcttac agtaattctc acattttcac
    12241 ctggcataac catttcaaca ccatcagcta atttaatcga acctgtaaca tcagttgttc
    12301 ttacataaaa ctgtggtcta tagttgttaa agaatggagt atgtctacca ccttcatctt
    12361 tatttaagat ataaacttca gcttcgaagt cagtgtgtgg agtaattgat tttggtttag
    12421 caagaaccat accacggata acttcttctt ttttagtacc acgaagaaga acacctacgt
    12481 tatctcctgc ttcgccttga tccatttctt ttctgaacat ttcaacacct gttacagttg
    12541 ttgtttgagt atctttaata ccaacgattt cgatagtatc acctactttt acaacacctt
    12601 tttcaattct acctgtaaca acagtaccac gacctgaaat tgagaaaaca tcttcaattg
    12661 gcatcaagaa gtctttttca gtatcacgag ttggagttgg aatatagcta tcaactgcag
    12721 ccataagatc cataattttt gctgaccatt caccatcttg tccagcttta gcttcttcaa
    12781 gagcttttaa agcagaacca gaaataatag gtgtatcatc gcctgggaaa tcataagagc
    12841 ttaataattc tctaatttcc atttcaacta actctaaaag ttcagcatca tcaaccatat
    12901 ctgctttatt cataaaaaca acaatatatg gaacgcctac ttgacgagaa agaagaatgt
    12961 gctctctagt ttgtggcata gggccatctg cagcagaaac aaccaagatc gctccatcca
    13021 tttgtgcagc acctgtaatc atgtttttaa cataatctgc gtgacctggg cagtcaacgt
    13081 gtgcatagtg acgattgtct gtttcatatt caatatgaga agtagcaata gtaataccac
    13141 gctctttttc ttctggagca ttatcgatat tatcataatc tttaagctct gctaaacctc
    13201 ttctagaaag aacagcagaa atagcagctg ttaaagtagt tttaccatgg tcaacatgac
    13261 caatagtacc aatatttacg tgtggcttat tacgtgaaaa tttttcttta gccatttttt
    13321 tcctccgtat aaaaaataaa ttgagcaaag caagtcttat atctatataa ttttttcaat
    13381 tcatggagct catagcggga attgaacccg cgacctctcc cttaccaagg gagtgctcta
    13441 cctctgagcc atacgagcgc tcagaaaaat tatacacaat aacagacaac aaaaactctt
    13501 aaatgggata tatactgtaa gttaaaggtt ttaaaataca gctcccagtt cttttaaatt
    13561 attggagcgg gaaacgggac tcgaacccgc gaccctcagc ttggaaggct gatgctctag
    13621 ccaactgagc tactcccgca aagcatggtg gtgagtcgtg gattcgaacc acggaaggcg
    13681 aaagccagca gatttacagt ctgccctcgt tggccacttg agtaactcac cataaaaata
    13741 ttgctttttc aatattctgg tcaaacactg ctaaaataaa tggagctggt taagggactt
    13801 gaacccccga cctgctgctt acaaggcagc tgctctacca actgagctaa accagcaaaa
    13861 ataaaagtaa gattataact caaaaaaaaa attttgtcaa gactttttta gtttttctat
    13921 aaaattttag tcttgtaaat tttattatca taaaccaata ttatttttat ctatattatg
    13981 ataatcaaat aaatttaaaa atttctttgc tctttcgctt tttggatttt taaaaaaact
    14041 tttaggatca ttttcttcga tgatttttcc ttcatccata aaaataattt tatctgctac
    14101 agctttagca aaacccattt catgagtaac aataagcata gtcataccct cttttgcaag
    14161 atttaacatc acttctaaaa cttctctgac aatctcagga tccagcgctg ctgtaacctc
    14221 atcaaaaagc attaactcag gattcatgca taaacttctt actatggcaa ttctttgctt
    14281 ttgtcctccg ctaagttctc ttggataagc atgaatttta tgcaaaagcc ccaccttttc
    14341 aagccaaatt ttagcctctt ttaaaacctc atctttcttt cttttttgca ctttcatagg
    14401 ccctagaagt atattttctt caacacttaa atgctcaaaa agctcataag attgaaaaac
    14461 cataccaact ttttgacgca ttcttggcca ttctttaaaa tctttatcta ttttctcatt
    14521 atcaatataa atattaccac ttgcaatctc ttcaagccca ttaatacaac gcaaaagcgt
    14581 agattttcca catccgctag gacctaaaat caccacaact tctttagcct taacttctaa
    14641 attaatatct tttaaagcat gatgcgaacc ataatacttt tgtaaatttt ctatttttag
    14701 tatactcatt ttagctccat tttttctcta attttcttga atataaagtg ataggataac
    14761 aaagtataaa aaagataaaa aaaatcaaac cataaataat aaaaggtgca aaatcatttc
    14821 tattatgaaa ttctataatt tgttgcccta cttttacaag ctctaccgcg ccgattaaat
    14881 aagcaaaggt tgtactttta atcatacgag taagtaaatt catgctcata ggagttaaac
    14941 gacgcatagc ttgtggaata ataacataag caaaactttg caccgtattt aaacctaaag
    15001 atgatgcact ttcatactga tgttttggaa tactctgcaa ggaaacacgc accaaatcca
    15061 tcatctcaaa acaaccccaa atgctaaaaa caataatagc tgcacttaca gaactcaaat
    15121 cccacccaaa ccatctagga aaaccaaaat acaccacaaa aagccatact aaaagtggca
    15181 taacacgcac aaattctaaa cccaaacgac aaaaagcata gatataggta tttttaaaac
    15241 tcattaaaat tcctaaaaat aacccaccta tcgaagtaat aataatgctg ataaatgaaa
    15301 tttcaagagt gacaaaaagc ccttgccaga gtcttaaaag cgtatcggta tttaaaagtt
    15361 caagcatgaa gcaacctttt ttcaaacttt agcaaaataa aagacaaagg caaaataatg
    15421 cataaatatc ccataaacaa caaaaacaat agctcatctg tcttataggt taaggaattt
    15481 aaactcttca ttaaattcac caaatctggc aaggcaataa tactaacgac tgaagtttct
    15541 ttgattaaaa atataatatt agcactaata cttggcatag aaatagccaa agcttgcggc
    15601 aaaatcacat aacgcaaatt tccaaatttt gaaaaaccca aagaaagtcc cgcttcaaac
    15661 tgctgttttc ttatggcttc aaatcccgct cttaaacttt cagccatata agaacctcct
    15721 aaaaaactaa gtcctactat agcacaagca aaagaaggcc ttaaagtttc ttctacgctt
    15781 aagcaaatca aatcaagcgg tggaatttgc tctaaatgta tattaaattt aggtaaagca
    15841 taatataaga aaaaaagttg aattaataaa ggcgtatttc ttgaaaactc tatataaagc
    15901 ttgcaaatat tttctaaaat ttttatttta aaataactca ttaaaataca aaacaaacct
    15961 attatcaaag aaaaaataat tccaaaaaag cttagtttta tcgtaagcca agcagccgtt
    16021 aaaaaagcag gagcttgagc taatataaaa tcaaaatcca ttctctacct taaattttac
    16081 caaagttctt tcatgatcat atctttat
//
LOCUS       DAPIWQ010000025        15886 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.025, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000025 DAPIWQ010000000
VERSION     DAPIWQ010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15886)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15886)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15886
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.025"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(43..2409)
                     /locus_tag="RJ267_000565"
     CDS             complement(43..2409)
                     /locus_tag="RJ267_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HDV7388442.1"
                     /translation="MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTC
                     QKFITEAKVHFECDIVGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTS
                     QNIYIDKELSSSSSHKSKAFTFIFTPELAPIKDYDGLDFNINFPHESLPYVGALDLNS
                     DPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQNAINRYRGSIFTSEFILYKLRAQN
                     KLYTQDPSMRDQQILEKMIDDAKNWTRTFTSDKNFSEVLHIMLRTYIALAQRADVEYT
                     MSILDNEQPNNYFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSL
                     AKNLLSNEQVNKAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDA
                     FAKMSKLDPSYEETLKDLALVLSHANRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEV
                     FFALGDNNASFLHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLI
                     ESKKIPNATQFLEKAAINDLKNAIKADNCINAANIFMRFSAYDIGQKIENKKQMLACL
                     IRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDD
                     ENFKAYYLQFLSLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTI
                     LTYAPKAIDYQNFKGINLFSPNLEFIYLDALTKINKNEESLAVLTDLLKLKLSDEDRA
                     RALYIQALTYERMQNIQAEKESLKQCLEIKSASNWQNLCKSKNQILNQ"
     gene            complement(2431..3819)
                     /locus_tag="RJ267_000566"
     CDS             complement(2431..3819)
                     /locus_tag="RJ267_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HDV7388443.1"
                     /translation="MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYI
                     GISSLSLIVSAFLILNNANAQGLEAKAFLATLNNDIVSFYASLVILCFSFLYLLMQKE
                     ENQGEFYALFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIAMRGSDNAISSAIK
                     YFSVAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIK
                     LSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAI
                     FSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLVACIPLLKEQNFDGILLAIFGYWTLF
                     AFANYAVFMILSNYENNSYESLNGLLVKKPLIAFCLSISVLSLAGIPPFGVFWGKFMI
                     LNTAILNGYWYLALFVALSSVIMLYAYLKILIHALFMKNDRVHNIKFSFIQNFILAFC
                     VCVSTFVILLML"
     gene            complement(3809..5296)
                     /locus_tag="RJ267_000567"
     CDS             complement(3809..5296)
                     /locus_tag="RJ267_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HDV7388444.1"
                     /translation="MLNYLIFFPLISAFVVLLLNRGGVKVFSVVVSFMILALNLDIFA
                     DFLQGVSFDYNLSFKILKFFSFHVGVDSIALVLILLSSLMIFLSFLFLKLEQKALISC
                     IFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSIL
                     MLVALIYQAYLNYQLLNIFTFDLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPL
                     HTWAPKVYANSPILVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVY
                     NALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLM
                     VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK
                     INLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIEGFSLLFREIVALVCIVVMIFG
                     LGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK"
     gene            complement(5298..7088)
                     /gene="nuoL"
                     /locus_tag="RJ267_000568"
     CDS             complement(5298..7088)
                     /gene="nuoL"
                     /locus_tag="RJ267_000568"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HDV7388445.1"
                     /translation="MQNLALISLFSPFIAFLFASCFALSEKKQFVGIICSLLVALSAF
                     CSLYLLFCNEAFNVSLFEWFAGVNFGFDIDAISLTMMSVVGIVATCVHFYSIFYMAHD
                     EGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNATYSFAAN
                     EAFIMNRIADLGMLLGIFWLYLQAGTLKYDEVFSMAQSLDHNALILIATCLFIGAMGK
                     SAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLG
                     AFVAIFAASMALVVRDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLATHAFFKSLL
                     FLGAGNVMHAMNDKLDIKKMGGLFKPLKITAILMCIGSLALAGIYPFAGFFSKDLILG
                     YSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHDEHPHEASKIALLAMSPLM
                     VLAIIAGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGAILAIFAYKNSWFKES
                     IEENKIHKLLSNDYFIPQFYHQFIVSKYESLCAILKHCDLYIFDRIVEKIALYSQNIS
                     QKMIMPNSLNLMLRFLVAAFVILLILVWMV"
     gene            complement(7090..7386)
                     /gene="nuoK"
                     /locus_tag="RJ267_000569"
     CDS             complement(7090..7386)
                     /gene="nuoK"
                     /locus_tag="RJ267_000569"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HDV7388446.1"
                     /translation="MIEKYFFIAILMFVIGLVGILKRQNLIMLFISSEILLNSANLAL
                     VAASKMHNDLNGQVFALFIMGVAACEVAVGVALCVLWYRRKGTLELKSLKEVEA"
     gene            complement(7383..7901)
                     /locus_tag="RJ267_000570"
     CDS             complement(7383..7901)
                     /locus_tag="RJ267_000570"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HDV7388447.1"
                     /translation="MIENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAIL
                     LLAMLIGFKYQNISTDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAI
                     VLTHKELTKEKQ"
     gene            complement(7898..8539)
                     /gene="nuoI"
                     /locus_tag="RJ267_000571"
     CDS             complement(7898..8539)
                     /gene="nuoI"
                     /locus_tag="RJ267_000571"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HDV7388448.1"
                     /translation="MKNYYLVDEKRKTPVSTWEKISQALRRSVKLELFVGLFVMMREL
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENGRKKVENYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDANLWVKKTPNYYDAMLESALENQNTQEQGENK"
     gene            complement(8549..9547)
                     /gene="nuoH"
                     /locus_tag="RJ267_000572"
     CDS             complement(8549..9547)
                     /gene="nuoH"
                     /locus_tag="RJ267_000572"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HDV7388449.1"
                     /translation="MSDFAFFALETLIKCIIIIAIFASLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFVSLAAIPMLP
                     EFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGAARGLVSII
                     SYESVGALALIAIIMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNR
                     TPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYTSMIAGAILVTLLFLGGFNSFWIIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALTVLL"
     gene            complement(9540..12002)
                     /locus_tag="RJ267_000573"
     CDS             complement(9540..12002)
                     /locus_tag="RJ267_000573"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HDV7388450.1"
                     /translation="MTVKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNVQKHWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPANGDTLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFA
                     SLNKAARFAFDTQNEADKDEKAFKELVELFEKNEIKNIKFNSFITNEEALILQNLKKK
                     FNLSLINEEALKFKEFLQEFIANSGEFYSANTQDITKSDFLVVAGMLLRYDAPTLSYK
                     INNALVMNKGSGLYFHPMEDMGIAKYSKNFIPHIHKNGDEEQILYFLLQKFSQDEGIK
                     THLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKKIIEVQRSV
                     FAKNLGIDEDKLEDLLLKKANFTLVVGSDFYFHKNAKKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAMICDLDNNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTN
                     AGDCKRGYELNLECFKQVAKKEFISPNFENLSLKEDEILLYSANPSYQFGRFSNRASA
                     INEVIFLGVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLD
                     TLSFFDERFVVANLEKLGANHE"
     gene            complement(11999..12691)
                     /locus_tag="RJ267_000574"
     CDS             complement(11999..12691)
                     /locus_tag="RJ267_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388451.1"
                     /translation="MIYDNALCFLDMPSLKNKNLCEKIGVNSINISCLEDKNLKAKFY
                     KCEIASLSFVLALLCKLSDEGQFCDLDEGYLSAESCFGEEEAGEVLAFLKEVKYLIID
                     KNIHSYKDSENIKYFLNFLSVKYGLKILDSDEEECDFKKAKLNTLKELDNYDGLVLFR
                     ANLQDKNLHCSKQFLQIAKCKDQSEVEILAKDFSFKTKLCLDENLQGTIAFLNYENNG
                     FDFTPIRIKEAK"
     gene            complement(12688..12915)
                     /locus_tag="RJ267_000575"
     CDS             complement(12688..12915)
                     /locus_tag="RJ267_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit E family
                     protein"
                     /protein_id="HDV7388452.1"
                     /translation="MRRVDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFVKEQGCELLNSLKFNQVDWTIVIKKERV"
     gene            complement(12912..14138)
                     /gene="nuoD"
                     /locus_tag="RJ267_000576"
     CDS             complement(12912..14138)
                     /gene="nuoD"
                     /locus_tag="RJ267_000576"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HDV7388453.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFLNDLKDYEDLLDDNRIWRLRTENV
                     GVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQGDSYARYKVY
                     MQEFRESLKILRQCAMLYKDTSPEILATHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            complement(14140..14934)
                     /locus_tag="RJ267_000577"
     CDS             complement(14140..14934)
                     /locus_tag="RJ267_000577"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HDV7388454.1"
                     /translation="MMRKYSDKKNAQTQNYYKDRFYHAPHTVKSDVNESVFKEDFEVL
                     KTQVEILNSFVELDFWVIEIKKEDNVKTLQMLKTLGYLSFTEASAIDFIADKNGFEVF
                     YQLLNLEKKLRVRIKTFVGVKERLQSVAHVFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWFGHPLLKTYPLKGDEFARWYEIDKIFGKEYREVVGEEQRDSGFADDKDTLNF
                     ARLYHEVPKGGQKKEISFKQEYQEDEGVAFVKKVKRDEAKILEKRR"
     gene            complement(14931..15434)
                     /locus_tag="RJ267_000578"
     CDS             complement(14931..15434)
                     /locus_tag="RJ267_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HDV7388455.1"
                     /translation="MAEHQVNYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLI"
     gene            complement(15416..15805)
                     /locus_tag="RJ267_000579"
     CDS             complement(15416..15805)
                     /locus_tag="RJ267_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HDV7388456.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIIALIFILLDIEVVFLFPWALIFKDLGWFGFLE
                     VFVFIVLLGVGFLYAYKKGAFAWQSIK"
BASE COUNT         5946 a         3023 c         1894 g         5023 t
ORIGIN      
        1 ccttagataa ctagccaaaa agctagttat ctctaaattt acttattgat ttaaaatttg
       61 atttttactc ttacataaat tctgccaatt tgaagcactt ttgatttcaa gacattgttt
      121 taaactttct ttttcagctt gtatattttg cattctttca taagttaagg cttggatata
      181 taaagctctt gctctatctt catctgaaag ttttaattta agtaaatctg ttaaaacagc
      241 taaactttct tcatttttat tgattttagt caaagcatca agatatataa attctaaatt
      301 aggactaaaa agatttatac ctttaaaatt ttgatagtca atggccttag gtgcgtaagt
      361 taaaatcgtt gtttgcatat tatgatcatt agcgtaagaa agtaaagcat cataagcttc
      421 caccatacta aaattcattg gaaaactttc taaaatttgc aaaattttaa tggcttgatt
      481 atagtcattt aaacgcaata aagataaaaa ttgcaaataa taagccttaa aattctcatc
      541 atcacttttt aaaattctag aattagctat atctttagaa attttaatca cctgaggata
      601 ttgtttattg tcaaaaagaa tagatgcttt ttgaagacca taaaatatag aatcttcatt
      661 ataattttta tctatataat caagtgcttg ttcaacatta gaagttctga taagacaagc
      721 taacatttgt tttttattct caattttctg acctatatca taagcactaa aacgcataaa
      781 aatatttgca gcattgatac aattatcagc ttttatggca ttttttaaat cattaatggc
      841 tgctttctct aaaaattgag tagcatttgg aattttttta ctttctataa gatctttata
      901 agctaaaatg gcactaaaat ttccctcttt ataataaagt gcaacatctt catctaaagc
      961 tttatttgca atattctcat ctttatttgc atattgcttc attaaatctg tataacgctg
     1021 atgcaaaaag cttgcattat tatcacctaa agcaaagaat acctcatcac ttgctttttt
     1081 aatttcatct aaatacttac catctaaata atcatccata tacaaatcaa ggtatttttt
     1141 agcatcacta gatctgttag catgtgataa aaccaaggct aaatctttta aagtttcttc
     1201 ataacttgga tcaagtttgg acattttagc aaaggcatct tcataaatac ttgcacttat
     1261 atcaaattgt cctttttgat taaataattt agcaagttct aaagatcttg gaatatcttt
     1321 tccaaaatat tcaggattgg cttttaaaat ggtattaata tattctatag ctttatttac
     1381 ttgctcattt gaaagcaaat tctttgccaa actcatagct gctcttgcag ctaaatctaa
     1441 attttttgta ttaaaataag tattttcata aatatttaca gctttttctt tttcatttaa
     1501 attataaata tagtctgcat aatcaagttt tgataactga gtaaaataat tattaggttg
     1561 ttcattatct aaaatcgaca ttgtatactc tacatcagca cgctgagcta aagcgatata
     1621 agttcttaac attatatgta aaacttctga aaaattttta tcacttgtaa aagtacgcgt
     1681 ccaattttta gcatcatcaa tcatcttttc taaaatttgt tgatcacgca tacttggatc
     1741 ttgagtgtaa agtttatttt gagctcttaa tttataaagt ataaattcac tagtaaaaat
     1801 actgccacga tatctattga tagcattttg tgcatcaatc accacttgat tgtaattagc
     1861 cttatcgtat tcttttttga tgcgtaaata agtattgata tctgcacttt gaggaataac
     1921 aacaggatca gaatttaaat ccaaagctcc aacataaggc aaactctcat gtggaaaatt
     1981 gatattaaaa tcgagtccat catagtcttt aataggtgct agttctggtg taaaaataaa
     2041 agtaaaagcc ttacttttat gcgaacttga tgaactgagt tctttatcta tataaatatt
     2101 ttgagaagtg tcaaacattc ttgcttgtat ttttggcaaa atgatcattt taattttttg
     2161 agcttcttgt ataaatttta aatcaaaagc agaaaaactc tgatctttta atttattatc
     2221 aaccatacct acaatatcac attcaaaatg aacttttgct tcggtaataa atttttgaca
     2281 tgtaaattct aaatcattac tcgcatgtaa aactgcaaaa gcttgattat tttcgcgacc
     2341 cgtgtttaaa acaagctcaa aagcaaaagc atttaaaaaa cttaataaaa ttaaaaataa
     2401 tattctcata aaataattat agcaaaactc ttataacatt aacaatataa caaaagtgct
     2461 tacacaaaca caaaaagcta aaataaaatt ttgtataaaa ctaaacttaa tattatgaac
     2521 cctatcattt ttcataaata aagcatgaat taaaatcttt aaatacgcat aaagcataat
     2581 aacagaagat aaagccacaa aaagcgccaa ataccaatat ccatttaaaa ttgctgtatt
     2641 taaaatcata aatttacccc aaaacactcc aaaaggcggg atacctgcta aagaaagcac
     2701 actaatgctt aaacaaaaag caattaaagg ttttttaacc aaaagcccat ttaaactctc
     2761 ataagaatta ttctcataat tgcttaaaat cataaataca gcataatttg caaaagcaaa
     2821 taaagtccaa tatccaaaaa tagcaagcaa aattccatca aaattttgtt cttttaataa
     2881 aggaatgcaa gctaccaaaa ccaaagaaga atgcactaca gaactataag caaacatttt
     2941 tttgatattg ttttgactta gagccgcaaa agcacctata agcatagaaa aaatcgctag
     3001 aactattatg atatattcaa aacctgtatt atttaaaaaa tcaaacaaac gaataaccac
     3061 aaccaacatg gcaacttttg gcacaactga aataaaagca accaaatttg tatgtgctgc
     3121 ataatacaca tctttaagcc aaaaatgaaa aggtgccaaa gaaagcttga ttgcacaaag
     3181 aacaaaaatc atcactccag cacccaaaag catgggatct ttttgaaact cattttttaa
     3241 cgctaaatta gcagataaat ctaaagttcc tgtttttaaa taaataaaag ctacagccat
     3301 aacaaaaaac ccagctccta cagccgctac actaaagtat tttatcgcac ttgaaatagc
     3361 attatcactt ccacgcattg ctattaaagt ataaagtgct aaagaagaac tttcaagtcc
     3421 tataaaaata agtactaaat ttgagcttga aaccatcaaa agcaaagatg caatcataaa
     3481 taaaaataaa gcataaaatt caccctgatt ttcttctttt tgcattaaaa gatataaaaa
     3541 tgaaaaacac aaaatcacca aagaagcata aaatgaaaca atatcattat ttaaagtagc
     3601 caaaaaagct tttgcttcta aaccttgagc atttgcatta tttaaaatca aaaaagcact
     3661 tacaatcaaa gacaaagaac ttatgccgat ataaaacgat cgatgaaatt tccaaaaacc
     3721 agagcaaagc aaaagaacta ttgcagttgt aattaaaaat aaaaatggat aagataagct
     3781 tatatttaaa agttctaaat ttaaaaaatt atttaacatt tgcctctcct attttagata
     3841 aaaaatctaa agtattttgc tcaacagctc taatattcat tgtttttata agattatcca
     3901 catctttttg tatcggcttt aaaagtatat ttggcataag ccctagtcca aaaatcatta
     3961 ctacaatgca cacaagcgct actatttctc taaaaagtaa agaaaaaccc tctataaagc
     4021 tttgtttttg catgaaaaat atttttctaa atactgcgaa catataaatc gctcctaaaa
     4081 taatcaccaa acctgccaac aaagcgtaaa ataaattaat ctttgctata cctaaaagaa
     4141 ttaaaaactc tcccacaaaa gaaacagtta aaggcaaaga aacactcgca agtaaaatga
     4201 gcataaagaa aattgaaaat aaaggtgctt ttttggctaa agaatggtaa aaagaaatat
     4261 cataagtatg atatctttgg tataaaagtt caaccattaa aaataaagct cccgttacaa
     4321 taccatgtgc aaacatataa aaaaccgcac cactaatacc caaagcattt aaagaaaaaa
     4381 ttcccaaaat catcacacca agatgtgaaa tagaactata agcaatcaat tctttaatat
     4441 tttctgctct ataagcaatt aaagcgttat aaacgatact tactatacat aaagctacaa
     4501 ttaaaggcat aaaatacaca ctcgcatctg gaaaaagtgg taaacaaaaa agtaaaaatc
     4561 caaaaggagc cattttaaaa actacaagca ttacagaaac aagtataggc gaatttgcat
     4621 aaaccttagg tgcccaagta tgaagtggaa ataaaggagc tttgatagca aaagcgataa
     4681 aaaatgctcc aaaaagtaaa agttgctctg taaaatttac tgctgaggca ttatttttcc
     4741 aaatttccaa gtcaaaagtg aagatattta aaagctgata atttaaataa gcttgataaa
     4801 tcaatgctac aagcattaaa attgaacccg caaaagcata gataaaaaat ttcacccctg
     4861 ctctaaaatc tttaccataa actcccataa tataaagcaa aggcaaaaga gaaaattccc
     4921 aaaaaacata aaacaacaaa ccatcttttg cgctaaaaag tcccataata gcaaattcta
     4981 aaaagaatat acaagatata agcgcttttt gttctagttt caaaaataaa aagcttaaaa
     5041 atatcatcaa agaacttaaa agtatcaata caagtgcaat actgtctact cctacatgaa
     5101 agctaaaaaa tttcaaaatt ttaaaagaga gattataatc aaagcttacc ccttgtaaaa
     5161 aatccgcaaa aatatccaaa tttaaagcca aaatcataaa acttacaaca acgctaaaaa
     5221 ccttaacgcc tccgcgattt aatagcaaaa ccacaaaagc agaaattaaa ggaaaaaata
     5281 tcaaataatt tagcatttta caccatccat actaaaatca acaaaatcac aaaagctgcc
     5341 accaaaaacc taagcattaa gtttaagctg tttggcataa tcattttttg tgaaatattt
     5401 tgagaataca aagcaatttt ttcaactatt ctatcaaaaa tataaagatc acaatgcttt
     5461 aaaatcgcac ataagctttc atattttgaa acgataaatt gatgatagaa ttgaggaata
     5521 aaataatcat tacttaaaag tttatgaatt ttattttctt caatactttc cttaaaccaa
     5581 gaatttttat aagcaaaaat agccaaaatt gcacccaaaa tagctgctac actcgcacaa
     5641 atcattacaa tttgattttg cgcatcaata aaaactaatt ttgtgcttaa atattcaaaa
     5701 aaactatgtt cgaaaaatcc tgcaataata gctaaaacca tcaaaggact catagccaaa
     5761 agtgcgattt tacttgcttc atgtggatgt tcatcatgtc ttgcaggggt aaaaaatacc
     5821 aacattaaaa gtctaaagct ataaaatgct gttaaaaaag ctgcgattaa gagcactaaa
     5881 aaaataccat ggtgaaaaga aatgaaagaa tatcccaaaa tcaaatcttt agagaaaaat
     5941 cctgcaaaag gataaattcc tgctaaagct aaagatccta tacacattaa aatagctgta
     6001 atttttaaag gtttaaaaag tccacccatt tttttaatgt ctaatttatc attcatagca
     6061 tgcattacat ttccagcgcc taagaaaagt aaagatttaa aaaaagcatg cgtagctaag
     6121 tgaaataaag ctataccata agccccaagt cctgcagcca caaacatata tccaagttgc
     6181 gataaggtag agtaagcaat aatgcgtttt aaatccctaa ccaccaaagc catagaggct
     6241 gcaaaaatcg ctacaaaagc tccaagtaag gcaataatat aagaaacttc aggaactaaa
     6301 tcataaagcg tactcgcacg aattaccaaa taaacccccg ctgttaccat ggttgctgca
     6361 tggattaatg cagaaacagg agttggccct gccatagcat cagcaagcca agtgtgaaaa
     6421 ggaaattgtg cagattttcc catagcccct ataaataaac aagttgcgat taagatcaaa
     6481 gcattgtgat ctaggctttg tgccatggaa aaaacttcat catattttaa agttcctgct
     6541 tgcaaataaa gccaaaaaat tcctaaaagc atacccaaat ccgcaatacg attcataata
     6601 aaagcttcat tagccgcaaa agaataagta gcgtttttat accaaaaacc tatgagcaac
     6661 caagagcaaa gcccaacgcc ttcccaacct acaaaaagtc ctaagaaatt atcactcata
     6721 actaaaaaaa gcatagaaaa gacaaaaagc cccaaataag caaaaaattt attaaaaccc
     6781 tcatcatgag ccatataaaa aatactataa aaatgcacac aagtagctac aatacctaca
     6841 acactcatca tagtaagcga aatagcgtct atatcaaagc caaaatttac tccagcaaac
     6901 cattcaaaca aactcacatt aaaagcttca ttgcaaaaaa gcaaatacaa agaacaaaaa
     6961 gcactcaaag caactagaag tgaacaaatt atccctacaa attgtttttt ctcactcaaa
     7021 gcaaaacaac ttgcaaacaa aaaagctata aaaggactaa aaagagaaat caaagctaaa
     7081 ttttgcatac taagcctcca cttcttttaa gctttttaat tccaaagtgc cttttcttct
     7141 ataccaaagc acgcacaaag ctacaccaac agctacttca caagccgcta cacccatgat
     7201 aaaaagtgca aaaacctgtc catttaaatc attgtgcatt ttagaagccg ctactaaggc
     7261 taaattagca ctatttaata aaatttcact cgaaataaaa agcatgatga gattttgtct
     7321 ttttaaaata cctacaagcc ctatgacaaa cattaaaata gctataaaaa aatacttttc
     7381 tatcattgtt tttcctttgt tagctcttta tgagtaagca ctatagcaca cactaaagca
     7441 atcaaaagta aaatagctat aaactcaaaa gccaaaagat attttgaaaa aatcgctaaa
     7501 gccagttgtt tattaaaatc aaacaaagca ggatcgttta aaggcaaatc cgtgctgata
     7561 ttttggtatt taaaacctat aagcatggcc aaaagtaaaa tcgcacttaa aaccaccaaa
     7621 gtaaaaaaac tttttttagc tttaagttgt tctttaaatt ctttagaagc atcaaaaaac
     7681 atcatcgcaa aactataaag tccaagcaca gctccactat aaacaataat ttgtatcaca
     7741 cctaaaaact ctgcatcaag taaaaaataa aatcccgata aaaacaccat tccacccgct
     7801 aaagccgaaa gagaataaag catattttta cttaaaaccg caatgccaaa aaagcctaaa
     7861 accactacac taaaaaatac aaaggctaaa ttttctatca tttgttttct ccttgctctt
     7921 gtgtgttttg attttctaag gcactttcaa gcatcgcatc gtaataattt ggcgtttttt
     7981 taacccacaa atttgcatcc tttctaagac ttcctgctcc ttcaaattca acttgatttt
     8041 taagcttatc aataggagtt aaaaaatctt gcttatagcc aaaataagac ctttgctcag
     8101 ctgcattttc atactctgtg ccatgcacta tagcaagttc aggacaaacc tcagcacaaa
     8161 aaccacaata aatacaacgc cctaaattaa tactataatt ttctactttt ttacgcccat
     8221 tttcatctaa agaagtttcc attctgatac aattgctaat gcaaattttt tcgcaaagcc
     8281 cacaacctat acatctttca ttttcgcttt ctataaaacg catcaaacga tgaacagcac
     8341 ggtaacgatt gtcaagcttt accttttcaa aaggatattt aatcgtagca ctattatttc
     8401 tcttaagtaa ttctctcatc atcacaaaaa gccctacaaa aagctctagt ttaacgcttc
     8461 tacgcaaagc ttgtgaaatt ttctcccaag tgctaacagg agtttttctt ttctcatcta
     8521 ctaaataata atttttcata tcaaactcct ataaaagaac tgtcaaagca gtgattaaaa
     8581 ggtttaaaac agctaaagga attaagatca aatagcacat tttcatcact tgatctggac
     8641 gcaattgcgg aaaagcagct cttgcccaaa aataccaaaa gaaaataaaa cttgatttta
     8701 ctatcatcat aatccaacca ggaataatcc aaaagctatt aaaaccccct aaaaacaaaa
     8761 gagtgaccaa aatagctcca gctatcatag aagtatattc acctatgaaa aacatacccc
     8821 atcttaaacc cgaatactcc gttccataac ccgctacaat ttcagcatca ttttccgtca
     8881 aacaaagcgg agttctatta gtctctataa ataaagcaat tataaaaagc acaaaagcca
     8941 aaggttgttt aaaaataagc caagaaaaaa atccatcgct ttgataattg ttaatatcca
     9001 ccaaagaaaa agaacctaca agcattataa tagcaatcaa agctaaagct cctacgcttt
     9061 cataggaaat aatcgataca agccctcttg cagcccctaa aatcgaccat ttattattac
     9121 ttgcaagtcc acccaaaaac accgcataaa agcaaagtcc tgaagtgccg atgacaaaaa
     9181 gcaaagctac attgatatct gccactatag gctgaatcac ccttccaaat aaagtaaatt
     9241 caggtagcat aggaatagct gctaaagaaa caaaagcaca aatagcagaa atcaaaggtg
     9301 ctatagcaaa aataaatttt tgcgaatttg aagggattat atcttcttta gtaaaaagtt
     9361 ttatcatatc agctacaagt tgaataagcc caaaaggccc taccatatca ggccctatgc
     9421 gtctttgaaa ataagctaaa acctttcttt cagcataagt tgcaagacct gctaaactcg
     9481 caaatattgc aatgataata atacatttaa tcaaagtctc taaagcaaaa aaagcaaaat
     9541 cactcatggt ttgctcctaa tttttctaaa ttcgccacaa caaatctttc atcaaaaaag
     9601 cttagcgtat caagtttttc atcaaaatac ggcaagaaag ctccattttt tatatcctta
     9661 tccacacgca cactaaggct taattcttta tcttttattt taagttttac aagatcttta
     9721 tcttttaaat ttttctcttt agctaaattt tcacttacac ctaaaaaaat cacctcatta
     9781 atcgcactag cacgatttga aaatctacca aattgatagc taggattagc actataaagc
     9841 aaaatttcat cttcttttag gcttaaattt tcaaaatttg gagagatgaa ttctttttta
     9901 gcaacttgtt tgaaacattc taaattaagc tcatatcccc ttttacaatc gcctgcattg
     9961 gtataaaaat tgtctaaatg atcaaaatca atcggagaaa aacctttatt tatagggagt
    10021 ctcttagtat aatttatagt atattcctca tcaaaaccta aagcattagc caaatcattt
    10081 aaaaaatatc ccttaaattc taaagcagca ttagttggta ccactctttt atcataattt
    10141 aaaaaagttc cttcttgctg atttaaactc gcactagcta aatttgcatg ctcttcataa
    10201 gaaaaactaa aatcaccttt ttcattgtag cctaaagtct tgccttcttg tgtattgtta
    10261 tccaaatcac aaatcatagc cacacctaag gtattagtat gcgtaggatt taaaaagact
    10321 ttaaaaggag tagtattttg gatcaaagca agtaatttag caagtttttt cgcattttta
    10381 tgaaaataaa aatcactccc tacaacaaga gtaaaatttg cttttttaag caataaatct
    10441 tctaatttat cttcatctat gcctaaattt ttagcaaaaa cagagcgttg tacttctatg
    10501 atttttttta cttttttagg tacgactttt tttacttctt tttgaatttc attgccttct
    10561 tcatcttttt ctatgacttg ttctacaact tcttcgttga tactttcttc tatttcttta
    10621 ttttcactaa caaaaaactc tgctaaatga gttttaatac cttcatcttg gctaaatttt
    10681 tgaagtaaaa aatataaaat ttgctcttca tcgccatttt tatgaatgtg cgggataaaa
    10741 tttttagaat attttgctat acccatatct tccataggat gaaaataaag ccctgagcct
    10801 ttattcatca ctaaagcatt attgatttta tagctaagcg ttggagcatc atatcttaaa
    10861 agcattccag ctacaaccaa aaaatcactt tttgttatat cttgagtatt agcgctataa
    10921 aactcaccag aattagcgat aaattcttgt aaaaattctt taaatttcaa agcttcttca
    10981 ttgatcaaag aaagattaaa tttctttttt aaattttgta aaatcaaagc ttcttcattg
    11041 gtaataaaac tattaaattt aatgttttta atttcatttt tctcaaaaag ctccacaagt
    11101 tctttaaagg ctttttcatc tttatccgcc tcattttgcg tatcaaaagc aaaccttgca
    11161 gccttattta aactcgcaaa ggcaaaatca ttactcacac gataaatttt ttctttttga
    11221 ttgctaatgc cgctttgctt aatatcataa tacatcaact cacaatcgct tgaatgcgga
    11281 tttgaagcag ggattctttt aagttcccaa atatttgaag tgtattgaaa tttcgaacct
    11341 atcaaagctc ctgttggaca cacgcttgta cattctccac aaaatgaaca atcaagcgta
    11401 tcaccatttg cagggcctat caaacttttt tgaaatttag tccaaatcgc ataagcatct
    11461 tttcccatgc tctctttaaa gctattatcc acactatctc cgccacgagg aacagtcttt
    11521 aaagcacttt cgccgatttt atccttacaa actgtaatac aacgctcaca cactatgcaa
    11581 agtgcgggat cgtaattaat cattccccaa tgtttatgtg gtttatgcgt gtctttaatc
    11641 caatgttttt gaacatttac acgactttta tgagtaaaat tttgcaattc acactcgcct
    11701 gatttatcgc aaactccaca ttctaaagga tgattgatac aataagcttg catgatctca
    11761 tttctttcat cccaaagatt ttgtaaatca ctttctacaa ccataccctc ttttgcttta
    11821 gtattgcaag aatatacctt tttaccatca gcttcaacca tacacatacg acaagccaaa
    11881 gtaggactac agcccgaaag atagcaaatc gctgggataa aaatatcatt tcttcttgct
    11941 atatttaaga tatattcgcc ttcttcaaag gcgcaatcta taccattaat cttaactgtc
    12001 attttgcttc ctttatgcga attggagtaa aatcaaaacc attattttca taatttaaaa
    12061 aagctatggt gccttgtaaa ttttcatcta aacaaagctt agttttaaaa ctaaaatctt
    12121 tagctaaaat ttcaacttca ctttgatctt tgcattttgc aatttgtaaa aattgctttg
    12181 aacaatgtaa atttttatct tgcaaatttg ctctaaaaag cactaacccg tcataattat
    12241 cgagttcttt tagggtgttt aattttgcct ttttaaaatc gcattcttct tcatcgctat
    12301 ctaaaatctt taatccatat tttacactta agaaattcaa aaaatatttg atattttcac
    12361 tatctttata agaatggata tttttatcta taattaaata cttaacctct tttaaaaaag
    12421 caagcacttc gcctgcttct tcctctccaa aacaagattc agcacttaaa tatccctcat
    12481 ctaaatcgca aaattgtcct tcatcgctta atttacaaag caaggccaaa acaaaactca
    12541 aacttgcaat ttcgcatttg taaaatttag cttttaagtt tttatcttcc aaacaagaaa
    12601 tattaatgct atttacacct attttttcac ataaattttt gtttttaagg cttggcatat
    12661 ctaaaaaaca aagagcatta tcataaatca taccctctcc ttttttataa caatagtcca
    12721 atcgacttga ttaaatttca aagaatttaa aagctcacag ccttgttctt ttacaaaaga
    12781 aaaacttttt tcaacaggag aaaaatcgcc gatttcaaaa agcaccacta aaacctcacc
    12841 ttgttttgct tcttttatga tttgtgctaa atcttcaaaa agctctttgc tttttcttaa
    12901 atctaccctt ctcatcgatc tatctcacct aaaactatat ttacattacc cataatggct
    12961 acaacatcag ctaaataagt acctacaagc atttcttcaa aaaacgcaca atgccaataa
    13021 ctaggcgttc tagcctttaa acgataaggt cttcctgtac catcactatg gataaaaaag
    13081 ccaagctcac cttttggact ttcagtaggc acataaactt cgcctttagg gggttttaaa
    13141 ccttgagtga ttaaaacaaa atgctgcatt aaagaataat tctgcgttaa aatttgttcc
    13201 tttgaagcac ttacatactc aggatgcgta gctaaaattt caggcgaagt atctttataa
    13261 agcatggcac attgtctaag gattttcaaa ctttcacgaa attcttgcat ataaacttta
    13321 tatcttgcat aagaatcccc ttgcgtagca taaggcacac caaattcaac ttcattataa
    13381 agcaaataag gctcttcttt gcgtatatcg tattttatgc cacttcctct taacatcaca
    13441 cccgtacaac cccaatttaa ggcttgttct ttagtaacca cacctacatt ttcagttctt
    13501 aaacgccaaa ttctattatc atctaaaaga tcttcataat cttttaaatc atttagaaat
    13561 ttatcgcaaa atgcaagcat ttcttctaaa taattctcag gtaaatcaag cataaccccg
    13621 cctattctca tagaagaatg cgtaagcctt gcaccgcaat acttttctat caaatccaaa
    13681 acatactctc gttctctaaa acagtataaa aatacactca tcgcaccaat atcaagcgca
    13741 tgagtagcaa gccaaagcaa atgcgatgtg atacggttta attctaaaag tatcatgcgt
    13801 atcactgcgg cacggcgtgg aatctctaaa ccacaaagct tttcaaccgc tgcacaataa
    13861 gcataattat tcgctgaagc agcgatatag tccattctat cagtagtagg aataaattct
    13921 tgataaatca tattttcagc cattttttcc ataccacgat gcatataacc tatacaagga
    13981 cgcgctttta caacttgctc tccatcgagt tctaaaataa gacgcaaatt tccatgcgct
    14041 gaaggatgtt gagggcctaa gttgataatc atttttgagt cttcttgctc aaaagctata
    14101 ttttcataat aaggttttaa cttgctagga atttgcattt taacgccttt tctctaaaat
    14161 ttttgcttca tcacgtttta ctttttttac aaaagccaca ccttcatctt cttgatattc
    14221 ttgtttaaag gaaatttcct tcttttgacc accttttggc acttcatggt aaagtcttgc
    14281 aaaatttagc gtatctttat catcagcaaa accagaatct ctttgttctt cgcccactac
    14341 ttcacgatat tctttgccaa aaattttatc aatctcatac catcttgcaa actcatcgcc
    14401 ctttaaagga taagttttca aaagcggatg tccaaaccaa tcatcaggca ttaaaatgcg
    14461 ttttaaatta ggatgattta tgatgaaaat tccaaacata tcataaattt ctctctcact
    14521 ccaatttgcc cctttaaaaa catgagccac gctttgcaaa cgctctttta cgcctacaaa
    14581 agtttttatt ctcactctta attttttttc taaatttaaa agctgataaa acacttcaaa
    14641 accattttta tctgctataa aatcaatagc acttgcttct gtaaaactta aataacctaa
    14701 agttttaagc atttgcaagg ttttaacatt gtcttctttt ttaatttcta ttacccaaaa
    14761 atcaagctct acaaaggaat ttaaaatttc tacttgagtt tttaaaactt caaaatcctc
    14821 tttaaaaaca ctttcattaa catcagattt tacagtgtgt ggtgcgtgat aaaatctatc
    14881 tttgtagtaa ttttgagttt gagcattttt tttatcgcta tactttctca tcatatcaac
    14941 cttttaggtg cgatcttgcg acttgctttt tctttgcgaa tctttttttg caaaatcatc
    15001 aaagcaaact gaaaactttc ggggcgtgga gcacagcctg gcacataaat atctacaggt
    15061 ataattctat ccactccttg aacagtagaa taagtattaa acataccgcc tgtattggca
    15121 caacttccca tagaaatcac ccatttagga tcaggcattt gatcataaag tcttcttgta
    15181 aattcagcgt gctttttaca caaagttcct gcgataatca tcacttcact gtggcgtggt
    15241 gaagctctaa aaatcgttcc aaatctatca aaatcatatc ttgaaccccc agccgccatc
    15301 atctcaatcg cacaacaggc aagtccataa gataaagccc ataaagaatt actcctgccc
    15361 cattgaacta gcttatccac actggttaaa actacgggca aaccacttgc ataatttact
    15421 tgatgctctg ccatgcaaac gctccttttt tataagcata taaaaatcca actcctaaaa
    15481 gtacgataaa aacaaaaact tctaaaaatc caaaccaacc taaatcttta aaaatcaaag
    15541 cccaaggaaa taaaaacaca acttctatat ccaaaagtat gaagattaag gcgatgatga
    15601 aaaattgaga gttaatcttg ttagcttgtt taacaggaat aggaccacat tcataaattc
    15661 caagtcctaa ttttttgcga ttttttgcgg caaaattatt accgattttt gaagctaaaa
    15721 aaaccagtcc aaaaaaaata acactagcaa gtaccagcat taaaaaaata ccaaaataag
    15781 gatgcgaagc atctatatga gacatttatt ctcctttttt aaagcacttt aatcactcca
    15841 caacaaaaat taaatttaca cttttcttta ttttactcta aacttt
//
LOCUS       DAPIWQ010000026        15452 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.026, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000026 DAPIWQ010000000
VERSION     DAPIWQ010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15452
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.026"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            49..312
                     /locus_tag="RJ267_000580"
     CDS             49..312
                     /locus_tag="RJ267_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002828964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbC/VirB2 family protein"
                     /protein_id="HDV7388457.1"
                     /translation="MKKRLLSLILISPIFAFGAGGIDKVNTFMQNLSIALYALGGVLL
                     TIALMWGASKIMYQGQTLREVAPVFIGGVIFGSASAIAGYIIT"
     gene            325..3093
                     /locus_tag="RJ267_000581"
     CDS             325..3093
                     /locus_tag="RJ267_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirB4 family type IV secretion/conjugal transfer
                     ATPase"
                     /protein_id="HDV7388458.1"
                     /translation="MEKNPLFKGLTRPPMIFGVPMTPFVIAMGCIILIAFYSQNIFLV
                     GFSIPVFFIMKAMTKRDDFIFRLMFLKMRFFSNPASKNYHKVKTYSTNSYRQMPPNSN
                     FPKISVFGLNAEPSFEKLIPFSSLINDSVVITKDYFLMTTWEIGGISFEAEEDDELDI
                     KNDLLNMLFKSFANESVSFYFHNCRYSIEDKLTSKFNNAFLEEIDRKYYESFKQGTLR
                     KNSLYLTLIFNPLKVKIEKTTFMKSSFENKRKTISVFLAKFSEFADRLEANIKDFNPK
                     RLKTYSKDDKTYSKQLEFYNYLLGGKFNPIRVLPSPIEQYLNGNLQNIQFGHDTIQFN
                     QNDSTKKFARCIEIKDYTNETFAGILDILMYLDVEYTVTQSFSPIPRVDAKSAISKQK
                     KQLIATEDDGFSQVEQIDEALDQLTNGEISFGKYHFSILVYGNTIKECKDNTNEVVTK
                     MNELGFGVTLATIALPATFFSQLPSNFAIRPRINLISSINYSSLIALHNFSMGKRDKN
                     CWGDAVSILKTPNKQPYYFNFHQSSGANKNDFGKFFLANTLILGQSSGGKTVFMNFIV
                     DQMMKYASKDTFPDDIPEDKRKFTAIYLDKDKGALGNILCAGGRYISIENGKPTGFNP
                     FMVESTQENIRQLQSLMKLLVTRNNEILTTREEEMLNNAVNSLMKGFEKEERKYPISL
                     LLENLTENVDDDNSLKSRLALFKKGKQFGWVFDNEYDNLDFPDDINLFGIDGTEFLDD
                     KDVSGILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFL
                     RLATQSLEDFLKLKNAATLIEQSSTMVFLSNPKAKEEEYVKGVGLSYDEYMIIKGFNP
                     VKRQFLIKRQDEKVICTLDLSPLGNENLKILSTETAYIDVIEKIFSQENKSLDEKVLE
                     LKEIYKNS"
     gene            3104..3670
                     /locus_tag="RJ267_000582"
     CDS             3104..3670
                     /locus_tag="RJ267_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HDV7388459.1"
                     /translation="MSNKVIINKQEVQFDTQNNQIFCTSLDVAKVFGKRHFHVLRDIE
                     NILNDLREIGTSQDLSNFGETYRNTEIRGFGKVKGKTRKDRCYNLTRDGFSLLAMGFT
                     GKKALQFKIAFINAFNEMEKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVIITDN
                     PYSKEAKNVFSLNYLVDNRTPKDPKKLQ"
     gene            3667..4332
                     /locus_tag="RJ267_000583"
     CDS             3667..4332
                     /locus_tag="RJ267_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388460.1"
                     /translation="MSDKELQKEILALENDVKQLEATIDVIKQRITHLKDIAWDRQSK
                     KESSQMYKVLKEDKTHTRVKSNVGDIKVDKDFMDKEIKKHLDNPNLRGMVTTQEMLSF
                     PKVAKGVEANNEARGYTWQVKANDGNTLVYGSRKYETNNEKIHRLATSHSKTEKNERQ
                     AEVGGRSHPHHPIFNDFNFRKSAENIISQQNKSTNDFKAKLEEFSTKKTNAIESINKE
                     FKR"
     gene            4366..4791
                     /locus_tag="RJ267_000584"
     CDS             4366..4791
                     /locus_tag="RJ267_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDV7388461.1"
                     /translation="MNNVNLIGYLGKDFEVGTTNSGRVYAKNSLAITKRWKNERGNEE
                     SSTTWIPIVLFGKSAESASTHIKKGSQFACSGELSSNQYQDEDGNTRTMLTVIVSKFY
                     WLGKKDKDDNGTQNPQVPPKEPNIDYENTNIESEETQVF"
     gene            4813..5082
                     /locus_tag="RJ267_000585"
     CDS             4813..5082
                     /locus_tag="RJ267_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006803305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388462.1"
                     /translation="MKNLSVEELAQELETSNHEKLIKALFLFEKNSSMEDLNSDQIEI
                     ILDEVYEFYINHKSISSFLQEDINQALDKAIDKELCKKQEKSFER"
     gene            5086..6057
                     /locus_tag="RJ267_000586"
     CDS             5086..6057
                     /locus_tag="RJ267_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HDV7388463.1"
                     /translation="MKKNIFGVNKAIGKSHPHENGARLISLDYNYTKEYNYNYEICVT
                     QFNHLFSEVKFSHRVAALWLTPQNYIQKFKKSILILTSLLVLPNLAFSAGIPVVDVTA
                     NQQMATQNAKQVAEWAKDASRWTETVAHYQKQIQAYKDELLSKTGIRDSVTFLKDIKQ
                     IYSDFAEVGQNIQSFYNDVLRDPQKFLSDKGNEIFGKYTSFDRCNFDFLSQSEKNICK
                     MNLITYAAQVETYNQASKQMDTISQTLQKLQDKLVNSKDIKESTDVGNAIQLEVAKIQ
                     MVKNQVDLANASYENQRKIKEDMAMQEYSKSLQKPRESAMEFFKNNK"
     gene            6054..7052
                     /locus_tag="RJ267_000587"
     CDS             6054..7052
                     /locus_tag="RJ267_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HDV7388464.1"
                     /translation="MNLDLFQTLGKSIQQIVDAIRQVGTNDKVAELSVLLSIIITLVI
                     MYKGYEVLMGRSQSPIRELTWDIVGKLVAITFALNLGGWLDLTISTMDGLYEWAGGGT
                     QMYKTLDEMYANTAQLTNIIWAKSSGVGGAILAIVAMLLCYVGFAIAVVPALTIFVVT
                     TFTQTLLVITAPIVFWLLVFKATKNVFTQWIGLLLSNTLVILLVGLFLGVFMEQISTW
                     IKYFAKVTQAGDEVLGTSIFFVIAALVLVIMIISAKLYAEKVANVSMEGAMGGVIGSV
                     LNPVGRLAGWAGGKVAGKTVNTAKAGGKLAAKGTLASAKGGYSFAKKMYERARNAG"
     gene            7042..7209
                     /locus_tag="RJ267_000588"
     CDS             7042..7209
                     /locus_tag="RJ267_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388465.1"
                     /translation="MQAKLIFILLLGVLFFSACSTKNQGKYDEFFNNQTGWIPVNTQN
                     KDLNKGTMDEK"
     gene            7199..7861
                     /locus_tag="RJ267_000589"
     CDS             7199..7861
                     /locus_tag="RJ267_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HDV7388466.1"
                     /translation="MKNEFNTAIDYEASFRYLIEKSNKRAWLIAFISIFIAIISIIAV
                     VLLTPLKTIEPYVIRVDNTTGMVDILTMLDEKEIKANEALDKYFISTYVKAREGYYYD
                     LLNQDYLLTQLMSSEKVANEYRALYEGDNARDQILKNSNEVSVQILSIVLGESNGVKT
                     ATVRAIITTKNLTSKGTTQATKVITLSYDYILAKASEENRFLNPLGFKVLTYRIDDEV
                     AQ"
     gene            7858..8745
                     /gene="virB9"
                     /locus_tag="RJ267_000590"
     CDS             7858..8745
                     /gene="virB9"
                     /locus_tag="RJ267_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein VirB9"
                     /protein_id="HDV7388467.1"
                     /translation="MKKIILINLLLCSFIWALNIPKTSTFDKRIAYAIYNANDVFQIN
                     AKNGYVSVLEFGTDERIINTATGFAEGWDLIEKDNLLFIKPKAYKTQLVQQENNNIGE
                     SQASQEFVLDPNPHDWKTNLIVITNLNTYVFDLKLVNQNNNATYKLSFSYPKKDLKAA
                     KEFLEAQEQENIRRDLNKNTIPRNWDFYMKINKGSEDISPNFAYDDGVFTYLGFDNTK
                     TFPAVFMYDNGKESILNTHIKKDGNYEVLVIQKITKQILLRSGDKVVGIFNRGYAKNP
                     LDKTRETSNENIQREINKK"
     gene            8772..9947
                     /gene="virB10"
                     /locus_tag="RJ267_000591"
     CDS             8772..9947
                     /gene="virB10"
                     /locus_tag="RJ267_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein VirB10"
                     /protein_id="HDV7388468.1"
                     /translation="MQDKEQDNLDNDFENHTSDLHDQKNHLRKIQAYVIFAVGGLLLV
                     LILVYFLKSFLSSNTTTEEVQKEDNKDLAQSVKTKEFIPPPPQKTFDELIAQESPKPT
                     QDLILEPKPPKPRIVKGAGVTVVASSNNDGFGNNGTGNREEFGEKPNTVFEFGQNGSL
                     QNSNNLQGGSNGDFVGEVFTPTIAKVSEFDQNLLLPKGTYIGCALKTRLVSSIKGGIA
                     CIVSNDVYSANGNTLLIEKGSTITGTFNTGQMDDGMDRLFVIWQEIRTPNNIIIPVYS
                     GATDELGASGVQGWVDHHYLKRFGSAVLLSMIDDSLAILADQIAGKDNKNNYANYTEN
                     TRDSAKEIANTALEKMIDIKPTLYKNQGDLVGVYVNRDIDFSKVYKLTRKKNVNNAR"
     gene            9928..10920
                     /gene="virB11"
                     /locus_tag="RJ267_000592"
     CDS             9928..10920
                     /gene="virB11"
                     /locus_tag="RJ267_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type DNA transfer ATPase VirB11"
                     /protein_id="HDV7388469.1"
                     /translation="MSITLDKYTQKFFGEFLKDDNINEICYNGDNKIWVQNSKGLWEC
                     IDTKLDFEQAGHFATASASFKKDKIDVSRPILSCILVGGERMQIVIPPATKSEHISIT
                     IRKPSKTRFKMEDHIKSGLFEDLNPDDKNKIKPSDEELIKLYEARDYQNFISKAVSYG
                     KNIIIAGETGSGKTTFMKTLIDFISLDDRIITIEDVEEIKFYEHKNFVQLFYPSEAKS
                     TDFLNSATLLKSCLRMKPDRILLAELRGAETYDFINVLASGHGGSITSCHAGSPEETF
                     TRLALMTLQNPQGQCVPFEIIQKTLKDLIDIVVHIHAHHGKRRISGIYFKEMER"
     gene            10921..12732
                     /locus_tag="RJ267_000593"
     CDS             10921..12732
                     /locus_tag="RJ267_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HDV7388470.1"
                     /translation="MQNNKSIQMIFLAIASFILTYLITPIVFFFLNKVKIMKAIEIYN
                     INFTLQAISNGYPKIWLSLGITFGICFVVFSVLVLSLKAKKSQFGEARFANFNEIKKM
                     NLFSDNGIIIGKYKGKILRFSGQQFVALGAPTRSGKGVGIVIPNLLEWRESAVVQDIK
                     QECFDYTSKYRKEILGQEVYLFNPFSRQTHRYNPLTYIDMSDKEHCDSQLMDLGNILY
                     PQDGDSTSKFFNGLAQNLFIGLCYLWRDLQLTDYGKEFQSAFDINVGEFNFYNILQLS
                     KGFSLKNEGKTLKGFDDTYNFLSYCEVLDEATIRRLETYFNINSDATKSGVMSSFNAP
                     LVPFESETLRLSTETSDFDLRDLRKKKMTIYIGITPDQLANAQFILNIFWSQLILLNT
                     KELPQSNKDLKYTCLMVMDEFTAPGRIPIYQSAISFMAGYWLRSLMIYQSNSQLETQP
                     PLGYGKEGAKTLLTNHACQIFYAPREQEDAEAISRILGNTTFKTKSRSINTGNNGGGS
                     HSISEASRALMLPQELREMPFENELITIDSGKPILCNKAFYYSDSYFMDKFKAVSKSL
                     STIRKIPSRKQLEDAILKGECKVKIQIIGENNDKKIA"
     gene            12713..13150
                     /locus_tag="RJ267_000594"
     CDS             12713..13150
                     /locus_tag="RJ267_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cag pathogenicity island protein"
                     /protein_id="HDV7388471.1"
                     /translation="MIKKSLDNLVIMALVFIMVGCSTAPKPKELDDNSALSINNSILE
                     KKYSFVPKDPYLSGFNWTYHIVVEKKTIDDDFIKNDLITKTFLLAHNSTKIILVGRKD
                     LIEQYKQYFEKNQVLAPIELQPVNPIERDFNKVNILFFNKTNF"
     gene            13162..13926
                     /locus_tag="RJ267_000595"
     CDS             13162..13926
                     /locus_tag="RJ267_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388472.1"
                     /translation="MKKILFPFCVFGVINSVNALDLQLLSGDTRTSCEVILCLASPVK
                     PPECASSLAKYFSIHFKKPWKTIQARKEFLNLCPIDTTNDPEMYKYKNDILVNLDGEC
                     STTALNQRIEKSKQPLKVEKICTGGGHNGSRECVEIKTYGFRINPELTNSCKLLASSK
                     YTDYHLKYTCDKKFYEQKDWERGYELKEVSQEIYNALPVSQREQGEKLTPISYGEFIK
                     LPANKRKQEGFGKYYRIDIAYYQKIIIKKDCWINEK"
     gene            13929..14726
                     /locus_tag="RJ267_000596"
     CDS             13929..14726
                     /locus_tag="RJ267_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388473.1"
                     /translation="MNEEINSNENNLFEIVNEDNSKNIAMQNYNELLEKFENLIKIII
                     AKINVGKQNAQNNTEDGIFKDLESNIIELDNTYLALISYFKNPPNDEEKEIINKTISI
                     KKTMEDFAKFANEIQKISLDDKLKQYNEQINKFCEIVEYKLSHNAKNYNTFLDHFVED
                     GKQKLNTFSEIFTKMTKNTKWYLIFFSFTSIGLGIALGILILLTYIKYSEYNNLKERV
                     STITQGLATISIDENSKGSFTLSFAKNKKTIFNENKNSIQITLQGGE"
     gene            14797..15417
                     /locus_tag="RJ267_000597"
     CDS             14797..15417
                     /locus_tag="RJ267_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388474.1"
                     /translation="MAFGKLVNDKIVIDTNNALNYKNKEGDIQQRKVDTALIDVIKEA
                     GQVAAMEHGAVLFSAKINDEWKNYFVNRDEKTHNIVLKPTNSQNRDDFIYINSNINEQ
                     GYFYYTINQKREAAKELIEGIGIIEHQNQDGTKSHYLETNVRLYNEELKQELKEKGNE
                     FIAVISNAGIRIVNEAEMKAQKQEQQIQQTQEIKEPEKTQNQEFGR"
BASE COUNT         6074 a         2037 c         2536 g         4805 t
ORIGIN      
        1 aatttaagac ataaataaaa cgctcaattt tttaacgaaa ggatatggat gaaaaaaagg
       61 ctattatcat taattttaat cagtcctatt tttgcatttg gtgctggcgg tattgataaa
      121 gttaatacct ttatgcaaaa cttaagcatt gctttgtatg cacttggtgg agttttactc
      181 acaattgcac ttatgtgggg tgcttccaaa attatgtatc aagggcaaac tcttagagaa
      241 gttgcacctg tttttatcgg tggcgttatt tttggatcag cttcggcaat agctggttat
      301 atcattacat aaataggact agctatggag aaaaatccac tttttaaagg tttaacgcgt
      361 ccacctatga tttttggcgt tccgatgaca ccttttgtta tagcgatggg atgtatcatt
      421 ttaattgcat tttatagtca aaacattttt ttagttggct tttctattcc tgtgtttttt
      481 atcatgaaag caatgacaaa aagagatgat tttatttttc gattaatgtt tttaaaaatg
      541 agatttttct ccaatcctgc ttccaaaaat tatcataagg ttaaaactta cagcacaaac
      601 tcttatagac aaatgccgcc aaattctaat tttccaaaaa tatctgtttt cggacttaat
      661 gcagaaccta gttttgaaaa attaattcct ttttcatcac ttataaatga ttctgtagtc
      721 attacaaaag attatttttt aatgacaact tgggagattg gaggaattag ttttgaagca
      781 gaagaagatg atgaactaga tattaaaaat gatcttttga atatgctttt taaatctttt
      841 gctaacgaat ctgtaagctt ttattttcat aattgtagat attctatcga agacaaatta
      901 acttcaaaat ttaataatgc ttttttagaa gaaattgaca gaaaatatta tgagagtttt
      961 aagcaaggaa ctcttagaaa aaattcttta tatttaactc ttattttcaa tcctttaaaa
     1021 gtgaaaatag aaaaaacaac ttttatgaaa agttcttttg aaaataaaag aaaaacaatt
     1081 agcgtatttt tagctaaatt tagcgaattt gctgatagac tagaagcaaa tattaaagat
     1141 tttaacccaa aaagattaaa aacatattcc aaagatgata aaacctactc taaacaacta
     1201 gaattttata attatttact tggtggtaaa tttaatccta taagagtatt accaagtcct
     1261 atagaacagt accttaatgg caatttacaa aacatacaat ttggacacga tactattcaa
     1321 tttaaccaaa atgatagcac aaaaaaattt gctagatgca ttgaaattaa agactataca
     1381 aatgaaactt ttgcaggaat tttagatatc ctaatgtatt tagatgtgga atacactgta
     1441 actcaaagct tttctcctat tcctagagtg gatgcaaaat cagcaatatc taaacagaaa
     1501 aaacaactca ttgcaactga agatgatgga ttttcacaag tagagcaaat agatgaagct
     1561 ttggatcaac ttacaaatgg ggaaatctct tttggcaaat atcatttttc aattcttgtg
     1621 tatggaaata ctataaaaga atgtaaagac aacacaaatg aagttgttac aaagatgaac
     1681 gaattaggat ttggagtaac tttagcaacg atcgccctac ctgcgacatt tttttcgcaa
     1741 ctaccatcaa actttgctat ccgcccacgc attaatctta tctcatccat taattattca
     1801 tctttaattg ctctacataa tttttctatg ggcaaaagag ataaaaactg ctggggtgac
     1861 gctgttagca ttttaaaaac accaaacaaa caaccttatt attttaattt tcaccaaagt
     1921 tctggtgcaa ataaaaatga ttttggaaaa ttcttcctag caaatacttt gattttaggt
     1981 caaagcagtg gcggtaaaac agtgtttatg aactttattg tagatcaaat gatgaaatac
     2041 gctagcaaag atacatttcc tgatgatatt cctgaagata aaagaaaatt tacagccatt
     2101 tatttggata aagataaagg tgcgttaggc aatatacttt gtgctggcgg tagatatatt
     2161 agcattgaaa atggcaagcc gacaggattt aatcctttca tggttgaaag cacacaagaa
     2221 aatataagac aacttcaatc gctaatgaaa cttttagtaa ctagaaataa tgaaattctt
     2281 acaactagag aagaagaaat gctcaataat gctgttaatt ctcttatgaa aggttttgaa
     2341 aaagaggaaa gaaagtatcc tatttcttta cttttagaaa acttaactga aaatgtagat
     2401 gatgataatt ctcttaaatc aagattagca ctttttaaaa aaggcaaaca atttggctgg
     2461 gtatttgata acgaatacga caatttagat tttcctgacg atatcaattt atttggaatt
     2521 gatggaacag aatttcttga tgataaagat gtatcaggga tattaagcta ttacattctt
     2581 tggcgtgtaa tgagcttggc agatggtaga agactttgta ttgatattga tgaagcttgg
     2641 aagtggctag aaaatgaaat cgtgcaagaa gaagttaaaa acaagtttaa aaccattaga
     2701 aagcagaatg gatttttaag acttgctaca caaagtttag aagacttttt aaagcttaaa
     2761 aatgctgcaa ctcttataga acagtcatca actatggtat ttttatctaa tccgaaagcc
     2821 aaagaagaag aatatgttaa aggagtaggt ttaagttatg atgagtatat gatcattaaa
     2881 ggtttcaatc ctgtgaaaag acaattttta atcaaaagac aagatgaaaa agtaatttgc
     2941 actcttgatc ttagcccttt gggtaatgaa aatttaaaaa tattatctac agaaacagca
     3001 tacattgatg tcattgaaaa aattttttca caagaaaata aaagtcttga tgaaaaagta
     3061 ttagagctga aagaaattta taaaaactca taggagatga aaaatgagta ataaagtgat
     3121 tattaataaa caagaagtgc aatttgacac tcaaaataat caaatctttt gcacaagttt
     3181 agatgtggct aaggtttttg gaaaaagaca ttttcatgtt ttaagggata ttgagaacat
     3241 tttaaacgat ttgcgagaaa tagggacttc tcaagaccta tccaattttg gggagaccta
     3301 cagaaatact gaaattaggg gttttggcaa agttaaaggg aaaacaagaa aagatcgttg
     3361 ttataatcta actcgtgatg gtttttcact tttagcgatg ggctttacag gtaaaaaagc
     3421 attacaattt aaaattgcat ttattaatgc ttttaacgaa atggaaaaac ttttacaaaa
     3481 agaaattaaa agccctaaca aatacttaac agatttgatg gaacttattt atccaaactt
     3541 accacaaaac gattacaaag ttagtgtgat tatcacagat aacccttatt ctaaagaagc
     3601 taaaaatgta ttttctttga attatcttgt tgataatcgc acaccaaaag atccaaagaa
     3661 gttgcaatga gtgataaaga attacaaaaa gaaatattag ctttagaaaa cgatgttaag
     3721 caactagaag caactattga tgtaattaaa caaagaatca ctcatcttaa agatattgct
     3781 tgggatagac aaagtaaaaa agaaagttct caaatgtata aagtgttaaa agaagataaa
     3841 acacatacaa gggttaaaag taatgtagga gatattaaag tagataaaga ctttatggat
     3901 aaagaaatta aaaaacattt agataatcca aatttaagag gaatggttac tacacaagag
     3961 atgttatctt ttcctaaggt ggctaaaggt gtggaagcta acaacgaagc aagaggctat
     4021 acttggcaag taaaagcaaa cgatggaaat actttagttt atggaagtag aaaatatgaa
     4081 accaataacg aaaaaattca taggttagcg acaagccata gtaaaacaga gaagaatgaa
     4141 agacaagcgg aagtgggtgg gcgtagtcat ccccaccatc ccatatttaa tgacttcaat
     4201 tttcgcaaat ccgctgaaaa tattatatca caacaaaaca aatccacaaa tgattttaaa
     4261 gcaaaattag aagaatttag caccaaaaaa acaaatgcaa ttgaatctat aaataaggag
     4321 tttaaaagat gaaaaaatat tacaccaaca aaaaggagtt aaacaatgaa taatgtaaat
     4381 ctaatcggat acttaggaaa agattttgaa gtaggcacta caaatagcgg aagagtttat
     4441 gcaaaaaatt ctcttgcaat tacaaagcga tggaaaaatg aaagaggcaa tgaagaaagt
     4501 agcacgactt ggatacctat tgttttattt ggcaaaagtg cagaaagtgc atcaacacac
     4561 attaaaaaag gttctcagtt tgcgtgtagt ggagaattat catccaatca atatcaagat
     4621 gaagatggaa atactagaac aatgctaacc gtgattgtat ctaaatttta ttggcttggc
     4681 aaaaaagata aagatgacaa tggaacacaa aatccacaag tcccaccaaa agagccaaat
     4741 attgattatg aaaacacaaa tatagaatct gaagaaacac aagtatttta agatttaagg
     4801 ataaaaatgt ctataaaaaa tttaagtgta gaagaattag cgcaagaatt agaaacttca
     4861 aatcatgaaa agctgattaa agctttgttt ttatttgaaa aaaattcttc aatggaagat
     4921 cttaattcag atcaaataga aataatttta gatgaagtat atgaatttta tatcaatcat
     4981 aaatctatat cttctttttt acaagaagat ataaaccaag cattagataa agctattgat
     5041 aaagagcttt gcaaaaaaca agaaaaatca tttgaaaggt aaaaaatgaa aaaaaatatc
     5101 tttggtgtta ataaagccat agggaaatct catccccatg aaaatggggc aagactaata
     5161 agccttgact ataattatac aaaggagtat aattataact atgagatttg tgtaactcaa
     5221 tttaaccacc tcttttctga ggttaaattt agccacaggg ttgcagccct atggctaacc
     5281 ccacaaaatt atatccaaaa atttaaaaaa tctattctta ttcttacttc cttattagtt
     5341 ttgcctaact tagcatttag tgctggtatt cctgtagttg atgtaacagc aaatcagcaa
     5401 atggctacac aaaacgctaa acaagtggca gaatgggcta aagatgcttc aagatggact
     5461 gaaacagtag cacactatca aaaacaaatt caagcttaca aagatgaact tttatcaaaa
     5521 acaggcatta gagattcagt aacttttcta aaagatatta aacaaatata ttcagatttt
     5581 gctgaagttg ggcaaaatat tcaatcattt tacaatgatg tattaagaga tccacaaaaa
     5641 tttttaagtg ataaaggtaa tgaaattttt ggaaaatata cgagctttga tcgatgtaat
     5701 tttgattttt taagtcaatc agaaaaaaac atttgcaaaa tgaatttaat cacttatgct
     5761 gctcaagtag aaacctataa tcaagcttca aaacaaatgg atacgattag tcaaacactc
     5821 caaaaattgc aagataaatt agtaaattcc aaagatatta aagaaagcac agatgttggc
     5881 aatgctattc agttggaagt ggcaaaaatt caaatggtta aaaatcaagt tgatttagcc
     5941 aatgcaagtt atgaaaacca aagaaaaatt aaagaagata tggctatgca agaatattct
     6001 aagtcgttac aaaagccacg agaaagtgct atggaatttt ttaagaacaa caaatgaatt
     6061 tagatctttt tcaaactcta ggtaaaagca tacaacaaat tgttgatgct ataagacaag
     6121 taggcacaaa tgataaggtt gcagaactta gcgtattgct ttctattatt atcactttag
     6181 tcattatgta taaaggctac gaagtcttaa tgggtagaag tcaaagccct attagagaat
     6241 taacttggga tatagttgga aagcttgttg ccattacttt tgccttaaat ttagggggtt
     6301 ggctagattt aacaatttca acaatggatg gattatacga gtgggcagga ggcggaacgc
     6361 aaatgtataa aacactagat gaaatgtatg caaacacagc acaacttaca aacataattt
     6421 gggctaaatc aagtggtgtt ggaggtgcta ttttagctat tgtagcaatg ctactttgtt
     6481 atgtaggatt tgcaattgct gtagttcctg cacttacaat ctttgttgtt actaccttca
     6541 cacaaacact gcttgtaatc accgccccta tagtattttg gcttttagtt tttaaagcca
     6601 ctaaaaatgt ttttacacag tggataggac ttttactttc aaatacttta gtcattttgc
     6661 ttgtaggctt atttttgggt gtttttatgg agcaaatatc aacttggatt aagtattttg
     6721 caaaagtaac tcaagcagga gacgaagtat taggcacaag tattttcttt gtcattgccg
     6781 ctttagttct tgtcattatg attatttctg caaaacttta tgccgaaaaa gttgcaaatg
     6841 tttcaatgga aggagctatg ggcggagtaa taggttctgt tttaaaccct gttggtagat
     6901 tagcaggttg ggctggaggc aaagtcgcag gaaaaactgt aaatacagca aaagctggtg
     6961 gaaaattagc agccaaaggt actttggcta gtgctaaagg cggttatagt tttgctaaaa
     7021 aaatgtatga aagggctaga aatgcaggct aaattaattt ttattttatt acttggtgtt
     7081 ttatttttta gtgcttgtag cactaaaaat cagggtaaat atgatgaatt ttttaacaat
     7141 caaacaggat ggattcctgt taatactcaa aacaaagatt taaataaagg aactatggat
     7201 gaaaaatgag tttaatactg caatagatta tgaagcaagt tttagatact taattgaaaa
     7261 aagtaataaa agagcttggc ttattgcttt tatttctatt tttatagcca ttatttccat
     7321 tatagctgtt gttttactta ctcctttaaa aacaatagaa ccttatgtaa taagagtaga
     7381 caatactaca ggaatggttg atattttaac catgcttgat gaaaaagaaa ttaaagcaaa
     7441 tgaagcatta gataaatatt ttattagcac ttatgtaaaa gctagagaag gctattatta
     7501 tgatctttta aatcaagatt atttacttac tcaattaatg agttctgaaa aagtagcaaa
     7561 tgaatatagg gctttatatg aaggtgataa tgcaagagat caaattctaa aaaactccaa
     7621 tgaagtaagt gttcaaattt taagtattgt tttaggagaa agtaacggag tgaaaactgc
     7681 tacagtcagg gcaattatta ctacaaaaaa tttaacttcc aaaggaacaa ctcaagcaac
     7741 aaaagtaata acattaagtt atgactatat cttagcaaaa gctagcgaag aaaacagatt
     7801 tttaaatcct ttaggtttta aagtattaac ttatagaatt gatgacgagg tggcacaatg
     7861 aaaaaaataa tcttgataaa tttattgttg tgtagtttta tttgggcttt aaatattcca
     7921 aaaacttcta catttgataa aagaattgct tatgcaattt ataatgcaaa cgatgtattt
     7981 caaattaatg caaaaaatgg ctatgttagc gttttagaat ttggtaccga tgaaagaatt
     8041 atcaatactg ctacaggttt tgcagaaggt tgggatttaa ttgaaaaaga caatctttta
     8101 tttataaaac ctaaagctta taaaacacaa cttgttcaac aagaaaacaa taatatagga
     8161 gagagtcaag catcacaaga attcgtttta gatccaaatc ctcatgattg gaaaactaac
     8221 ctaattgtta ttacaaatct aaatacttat gtattcgatt taaaacttgt aaaccaaaat
     8281 aataacgcta cctataaact cagtttttct taccctaaaa aagatttaaa agccgctaaa
     8341 gaatttttag aagcacaaga acaagaaaat atacgcagag atttaaataa aaataccatt
     8401 cctagaaatt gggattttta tatgaaaatt aacaaaggta gcgaagacat aagtccaaat
     8461 tttgcttatg atgatggtgt ttttacatat cttggttttg ataatactaa aacttttcct
     8521 gctgttttca tgtatgataa tggtaaagaa agtattttaa atactcatat taaaaaagat
     8581 ggcaattatg aagttttagt aattcaaaaa attactaaac aaatcttgtt aagaagtggc
     8641 gataaagtcg ttggtatttt taatcgtggc tatgcaaaaa atcctttaga taaaacaaga
     8701 gaaacctcca atgaaaatat tcaaagagag ataaataaaa aataaaacga atgaaactaa
     8761 aaggaataag tatgcaagat aaagaacaag ataatttaga caatgatttt gaaaatcata
     8821 caagtgattt acacgatcaa aaaaatcatc ttagaaagat acaagcttat gtaatttttg
     8881 ctgtgggtgg attattatta gttttaatat tagtttattt tttaaaatca tttttaagta
     8941 gcaatacaac taccgaagaa gtacaaaaag aagataataa agatttggca caaagtgtta
     9001 aaacaaagga atttattcca cctcctccac aaaaaacatt tgatgaacta attgcacaag
     9061 aatcaccaaa accgacacaa gatttaatac ttgaacccaa acctccaaag cctagaattg
     9121 ttaaaggtgc aggagttact gttgtcgctt catctaataa tgatggattt ggaaataatg
     9181 gcacaggaaa cagggaagaa tttggagaaa aacctaacac agtgtttgag tttggacaaa
     9241 atggttcttt acaaaactct aataatttac aaggtggtag taatggagat tttgttggag
     9301 aggtcttcac tcccacaatc gctaaagtta gcgaatttga tcaaaattta ctattaccta
     9361 aaggaactta cataggctgt gctttaaaaa caagattggt aagttctatt aaaggtggaa
     9421 tcgcttgtat tgtatcaaat gatgtctatt ctgctaatgg aaatactctt ttaattgaaa
     9481 aaggtagcac tattacagga acttttaata ctggacaaat ggatgatgga atggatagat
     9541 tatttgtaat ttggcaagaa attagaacac cgaacaatat cattatccct gtttattcag
     9601 gtgctaccga tgaattaggt gcaagtggcg ttcaaggttg ggtagatcat cattacttaa
     9661 aacgatttgg ctctgctgtt ttactatcaa tgatagatga ttcactggct atcttagcgg
     9721 atcaaattgc aggtaaagat aataaaaata attatgccaa ttacactgaa aatacaagag
     9781 attctgcaaa agaaatcgca aatacagcac tagaaaaaat gattgatatt aaacctacac
     9841 tttataaaaa tcaaggtgat ttggtcggtg tttatgttaa tcgtgatatt gatttttcaa
     9901 aagtttataa acttacaagg aaaaagaatg tcaataacgc tagataaata tactcaaaaa
     9961 ttttttggag aatttttaaa agatgataat atcaatgaaa tctgctataa cggcgataat
    10021 aaaatttggg tacaaaactc taaaggatta tgggaatgta tagatactaa acttgatttt
    10081 gaacaagctg gacattttgc aactgcttca gcctcattca aaaaagataa aatagatgta
    10141 tcacgcccta ttcttagttg tattctagta ggtggagagc gtatgcaaat tgttattcct
    10201 cctgctacaa aaagcgaaca catttcaatt actattagaa agccaagcaa aactcgcttt
    10261 aaaatggaag atcatattaa aagcggactt tttgaagatt taaatcctga tgataagaat
    10321 aaaatcaaac caagcgatga agaattaatc aagctatatg aagcaagaga ttatcaaaat
    10381 tttatatcca aagctgttag ctatggtaaa aatattatta tcgctggtga aacaggaagc
    10441 ggtaaaacta cctttatgaa aactcttatt gattttataa gccttgatga taggattatc
    10501 acaatagaag atgttgaaga aatcaaattc tatgaacaca aaaatttcgt gcaattattc
    10561 tatcctagcg aagcaaaaag tacagatttt ttaaattctg caacactttt aaaatcttgt
    10621 ttaagaatga agcctgatag gattttacta gcagagctta gaggtgctga aacttatgat
    10681 tttattaatg ttttagctag tggtcatggt ggaagtatca caagttgcca tgcaggaagc
    10741 cccgaagaaa catttacacg acttgcttta atgactctac aaaatccaca aggtcaatgc
    10801 gtgccttttg aaattatcca aaaaacactt aaagacttaa tagatattgt cgtgcatatc
    10861 catgcccatc atggaaaaag gcgtattagc ggcatttatt ttaaagaaat ggagagataa
    10921 atgcaaaata ataaaagcat tcaaatgatt tttcttgcta tagcgagttt tattctcact
    10981 tacttaataa cgcccattgt ttttttcttt ttaaataaag taaaaataat gaaagcgatt
    11041 gaaatttata acataaattt tacgctacaa gcaatctcta atggttatcc aaaaatatgg
    11101 ctttctttag gtattacttt tggcatttgt tttgttgttt tttctgtttt ggtgttatct
    11161 ttaaaagcca aaaaatctca atttggcgaa gctagatttg caaattttaa tgaaattaaa
    11221 aaaatgaatt tattttcaga taatggaata attatcggaa aatacaaggg aaagatttta
    11281 agatttagcg gtcagcaatt tgtagcctta ggagcaccca caagaagtgg taaaggcgta
    11341 ggtatagtaa taccaaactt gttagagtgg cgagaaagtg ctgttgttca agatattaaa
    11401 caagaatgtt ttgactacac aagcaaatat agaaaagaga ttttaggaca agaagtttat
    11461 ttattcaatc cattttcaag acagacacat cgctataatc ctttaactta tattgatatg
    11521 agtgataaag agcattgcga tagtcaatta atggatttag gtaacatact ctacccacaa
    11581 gatggggatt ctacctcaaa atttttcaat ggcttagcac aaaacttatt tattgggctt
    11641 tgttatttat ggcgtgattt acaattaacc gattatggaa aagaatttca aagtgcgttt
    11701 gatattaatg taggagaatt taacttttac aatattttgc aactctcaaa aggtttctca
    11761 cttaaaaatg aaggaaaaac tttaaaagga tttgatgata catacaattt cttatcttat
    11821 tgtgaagttt tagatgaagc aaccataagg cgtttagaaa cttattttaa tattaactca
    11881 gatgctacta aatcaggtgt aatgagctct tttaatgctc cgcttgtgcc atttgaaagt
    11941 gaaacattaa gattaagcac agaaacaagc gattttgatt tgcgagattt gcgtaaaaag
    12001 aaaatgacaa tttatatagg aattacgcct gatcaattag caaatgcaca atttatttta
    12061 aatatttttt ggtcgcaact tattttatta aacaccaaag aattgccaca aagcaataaa
    12121 gatttaaaat atacttgttt aatggttatg gatgaattta ctgcacctgg tagaattcct
    12181 atctatcaat cagcaatcag ttttatggct ggttattggt taagatcttt gatgatttat
    12241 caatcaaatt cacaacttga aacacaacca cctttgggct atggaaaaga aggagctaaa
    12301 acactcttaa caaatcatgc ttgtcagatt ttctatgcgc caagagagca agaagacgca
    12361 gaagctatct ctaggatttt aggaaatact acttttaaaa caaaatcaag aagtattaat
    12421 acaggcaata atggaggtgg atcacatagt attagcgaag caagtagggc tttaatgttg
    12481 ccacaagaac ttagagaaat gccttttgaa aatgaactaa ttactattga tagtggaaaa
    12541 cctattttat gcaataaagc attttattat tcagattctt attttatgga taaatttaaa
    12601 gctgtttcga aaagtttatc aacaataaga aaaatccctt cacgcaaaca attagaagat
    12661 gcgatcttaa agggagaatg taaagtaaaa attcaaatta taggagaaaa caatgataaa
    12721 aaaatcgctt gacaatttag tcataatggc tttagttttt ataatggtgg gttgctctac
    12781 agccccaaaa ccaaaagaat tggatgataa ttctgcattg agtatcaata attctatttt
    12841 ggagaaaaaa tatagctttg ttcctaaaga tccttatttg agcggattta attggactta
    12901 tcatatcgtg gttgagaaaa aaactataga tgatgatttt attaaaaatg atcttattac
    12961 taaaactttt ttactcgcac acaattctac aaaaatcatt ttagtaggta gaaaagattt
    13021 aattgaacaa tataagcaat actttgaaaa aaatcaagtt ttagcaccta tagaattaca
    13081 gcctgtcaat cctattgagc gtgattttaa caaagttaat attttatttt ttaataaaac
    13141 aaatttttaa aggagagaaa aatgaaaaaa atattattcc cattttgtgt ttttggtgta
    13201 ataaatagtg ttaatgcttt agatttgcaa ttactatctg gtgatactag aacttcttgc
    13261 gaagtaattc tttgtttagc aagtccagtt aaaccacctg aatgtgcatc ttctttagca
    13321 aaatatttta gcattcactt taaaaaacct tggaaaacta tccaagcaag gaaagaattt
    13381 ttaaatttgt gtcctattga cacaacaaat gatccagaaa tgtataaata taaaaatgat
    13441 attttagtta acttagatgg agaatgctct acaactgcat taaatcaaag aattgaaaaa
    13501 tcaaaacaac ctttaaaagt tgaaaaaata tgcactggtg gtgggcataa tggatcaaga
    13561 gaatgcgtag aaataaaaac ttatggattt agaataaatc ctgaacttac aaactcttgc
    13621 aaacttttag cttcatcaaa atacacagat tatcatttaa aatatacttg cgataagaaa
    13681 ttttatgagc aaaaagattg ggaaagaggt tatgaattaa aagaagtatc acaagaaatt
    13741 tataatgctt tacctgtatc gcaaagagaa caaggagaaa aattaactcc tataagttat
    13801 ggagaattta ttaaactacc tgctaataaa agaaaacaag aaggatttgg caagtattat
    13861 agaatcgata ttgcttatta tcaaaaaata attattaaaa aagattgctg gataaacgag
    13921 aaataacaat gaatgaagaa attaattcta acgaaaataa tctttttgaa atagttaatg
    13981 aagataattc aaaaaatata gctatgcaaa actataatga attattggaa aaatttgaaa
    14041 atcttataaa aataattatt gctaaaatta atgttggtaa gcaaaatgca caaaataata
    14101 cagaagatgg tatttttaaa gatttagaaa gcaatattat agagctagat aatacctatt
    14161 tagctcttat ttcttatttt aaaaatcctc ctaatgatga agagaaagaa attattaata
    14221 aaaccatttc tattaaaaaa acaatggaag attttgctaa atttgctaat gaaattcaaa
    14281 aaatatcatt ggatgataaa cttaaacaat ataacgagca aattaataaa ttttgcgaaa
    14341 tagtagaata taaactttct cataatgcaa aaaattataa tacttttctt gatcattttg
    14401 ttgaagatgg aaaacaaaaa ttgaatacat tttcagaaat ttttacaaaa atgacaaaaa
    14461 atacaaaatg gtatcttata ttttttagtt ttacttctat agggttaggt atagctcttg
    14521 gcattttaat tttgcttact tatataaaat attcagaata taacaattta aaagaaagag
    14581 taagcacaat cactcaaggt ttagccacta tctctattga tgaaaatagt aaaggaagct
    14641 ttaccttgag ctttgcaaaa aacaaaaaaa ctattttcaa tgagaataaa aatagtattc
    14701 aaatcacact acaaggaggt gaatgaacag aacaattata tacaaaaaaa tgcaaaaaac
    14761 aaaaacaaat cataaaaaat ttaaaaagga gaaaaaatgg catttggaaa attagtaaat
    14821 gataagattg ttattgatac caataatgct ttaaactaca agaataaaga aggtgatatt
    14881 caacaaagaa aagtagatac tgctttaatc gatgttatta aagaagctgg acaagttgct
    14941 gcaatggaac acggagctgt gcttttttca gcaaaaataa atgatgagtg gaaaaactat
    15001 tttgttaata gagatgaaaa aactcacaat atagttttaa aacctacaaa ttcacaaaat
    15061 agagatgatt tcatatatat caactctaac ataaatgagc aaggttattt ttactacaca
    15121 attaatcaaa agcgagaagc tgcaaaagaa ttaattgaag gaattgggat tatagaacac
    15181 caaaaccaag atggaactaa aagtcactat ttagaaacta atgtaaggct ttacaatgaa
    15241 gaattaaaac aggaacttaa agaaaaaggt aatgagttta tagctgtaat ttcaaatgct
    15301 ggaattagaa ttgttaatga agctgaaatg aaagcacaaa aacaagaaca acaaatacag
    15361 caaactcaag aaattaaaga gcctgaaaaa actcaaaacc aagagtttgg aagataaaaa
    15421 tatgcacctc ataaaggtgc atatttatag tt
//
LOCUS       DAPIWQ010000027        15181 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.027, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000027 DAPIWQ010000000
VERSION     DAPIWQ010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15181)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15181)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15181
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.027"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..1191
                     /locus_tag="RJ267_000598"
     CDS             <1..1191
                     /locus_tag="RJ267_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388475.1"
                     /translation="WGVFCECEFSSNLSEFEKINEENFNTFLNLAFDLLSQEKKIYLK
                     DKNGIYEFSLFKNEFIGDFLLPCDIKAINSVFVCSNENLKLLASLEKPLMKLRLNAIF
                     RKNHNLDFNDFKIRLARDLFCFALGLKLFENEYKFLSVKKIEEYQKDFYISALDEQVV
                     VLEGFEFINAKARELIFSKEDKNMARISYLVSRYKEKAFILELSKDDEDILLINKELN
                     LLKLCLPKHSKELYEEIKKDEIGARLLENFSKEFPLLDENFELQNNFYSLFGLVGRVL
                     NLGKNLQESVSELLKIADESKMPRGVKIDYRLKEDKSFDYTRTLRSAMSFMLAGVDSA
                     NIAYGAVESLAYFLRDTYDELREKKQSDLALISGSLFEHKSLLKNTLKHLKNCQLSDV
                     PLRI"
     gene            1172..3361
                     /gene="hypF"
                     /locus_tag="RJ267_000599"
     CDS             1172..3361
                     /gene="hypF"
                     /locus_tag="RJ267_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HDV7388476.1"
                     /translation="MCHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGVE
                     IILACTQKECENFIENLKNHLPPLARIDQLIITQISISNYENFSITPSLENTKSTPML
                     SDFALCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRAHTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFIQSAKFLKEGKILA
                     IKGMGGFHLMCDAFNEEALKTLRLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKGSLVATSANLSGESI
                     IKDEFNLRQKLDKVFDFYLDYDREIINASDDSIAQVVNGKTMFLRTSRGLNPFYLERN
                     FNKKGTFLALGAELKNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLK
                     FDAILCDKHPHFSYAKEFEERIKISHHYAHFCAAYFEYEENFAKDEKALAFICDGTGY
                     GEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLEDKAKDF
                     LAKIPKIKLKNLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYD
                     KNLDFSYKLFVEKGQVNFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLL
                     SGGVFQNKTLLEILKAKNFDFFVPLKYPCNDSSIALGQMVHFLNLEK"
     gene            3438..4181
                     /gene="hypB"
                     /locus_tag="RJ267_000600"
     CDS             3438..4181
                     /gene="hypB"
                     /locus_tag="RJ267_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HDV7388477.1"
                     /translation="MCKDCGCSINSSHTHDHHHDHHHENPSLKESKTIEVISKILSKN
                     DEEAKHNRAHFNETNTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     AIRVKNAGALAYQITTGQSCHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSVTEGSDKPQKYPVMFKKADIVLITKADLAHHFDFDVKEATRLIKELNP
                     RADIITLDAKNDTNMELWYKVLKLKKELF"
     gene            4181..4462
                     /locus_tag="RJ267_000601"
     CDS             4181..4462
                     /locus_tag="RJ267_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HDV7388478.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            4446..5537
                     /gene="hypD"
                     /locus_tag="RJ267_000602"
     CDS             4446..5537
                     /gene="hypD"
                     /locus_tag="RJ267_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HDV7388479.1"
                     /translation="MNFIDEFRDKKSILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLEIAKQNLNKNIIFFAIGFETTTPMSALLLQKLIEEKIN
                     NVFFHINHITVPAPVEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFKVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCAVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNA"
     gene            5534..6508
                     /gene="hypE"
                     /locus_tag="RJ267_000603"
     CDS             5534..6508
                     /gene="hypE"
                     /locus_tag="RJ267_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HDV7388480.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNANNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIISKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEANVKSDCKALDKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEVLGLCELFGYEAYELANEGTFILCVEKEDGLKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            6508..6852
                     /gene="hypA"
                     /locus_tag="RJ267_000604"
     CDS             6508..6852
                     /gene="hypA"
                     /locus_tag="RJ267_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HDV7388481.1"
                     /translation="MHELSIVESLIELCEENALNNKACNVQEIYVKIGRLSGIEVDLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDQTSILEENVFKCPKCQSIEYKITQ
                     GEDLHLMRLVME"
     gene            complement(6874..7917)
                     /locus_tag="RJ267_000605"
     CDS             complement(6874..7917)
                     /locus_tag="RJ267_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction enzyme HsdR N-terminal
                     domain-containing protein"
                     /protein_id="HDV7388482.1"
                     /translation="MDFENQLNAIVETIAERKTLVNTEEATKMTFIMPFLKTLGYDVF
                     NPSIVVPEYTADIGTKKGEKVDYAIFKDSKPFILIEAKNHTENLDNHNNQLVRYFNTN
                     PSIKFAILTNGIEYRFFTDIEQQNLMDKIPFLVVNLEKLKPRDIKDLKRFICTDLNLD
                     EILSIAMEKKYYRSIQEIFKSEIENPSDEFTSFFAKQMTEKRMTSAVLEEFKNYIKKS
                     FKEIINDLAYEKITSIKNNLQNINDDENDEQIDESKDIVTTEEELQGFYIVKSILASV
                     SANLEDVSYKDTLSYFSILYQGKVTKWICRLYFNTSKKSISFPDGASYNIEKLEDIYQ
                     YKADIIKAFESRK"
     gene            complement(8010..8975)
                     /locus_tag="RJ267_000606"
     CDS             complement(8010..8975)
                     /locus_tag="RJ267_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HDV7388483.1"
                     /translation="MYRKELQILLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDE
                     TLKLFFEEYNFTRASDFLSAGSLFSEKKLLEIKTSKKIPTKDLKVLVDLCKNNADNFF
                     LLELYDESSKQSDIEKIFSPHFVRFFKANGAKEGVELLSIKAKQLGVEITQNALFTLF
                     TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFESFFEKILKKQDFKSELEK
                     ILDNFNEIALINSLYNSFYRLFKIALYAKVNGKIDFKDLLGYTPPPQVGQNLSSQAFS
                     LKIEQYKEIFTLLLKSEYELKTNSKLVKKEFLISNLLKLARILKS"
     gene            complement(8968..10902)
                     /locus_tag="RJ267_000607"
     CDS             complement(8968..10902)
                     /locus_tag="RJ267_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacB/RNase II family 3'-5' exoribonuclease"
                     /protein_id="HDV7388484.1"
                     /translation="MKEFLNSLSYGISSHEVNNEFKQIFRELLTNHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLMITKRYGQAVLGMNIKTGLSTALKASQKSLKALPLGTILKIEN
                     ENNNIIEVLGHIDDESVDEKISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDL
                     RALPFCTIDPIHAKDFDDAIYFDTQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY
                     FPHIAIPMLPRPLSENICSLKPHLDRLAYCFKITLNHENKVIKEELFEGIINSKRRFN
                     YDEVDEILIQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDENLSLKS
                     TVFEKDTPSHNLIEDCMLLANKAAAKLIDIGVFRNHLSADVRKIDKLLNELRELGIDV
                     NFKPNLPELIRDIQALADELNLRAEVDKLIIKAQKKAEYSSVNAGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIESTCENLSTLEREADKVAFDFMDRK
                     FARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKGADIILYDTRVNLLENVEVQIMEAD
                     IVMAKIYAKITQRLIKEENV"
     gene            11021..12043
                     /gene="ilvC"
                     /locus_tag="RJ267_000608"
     CDS             11021..12043
                     /gene="ilvC"
                     /locus_tag="RJ267_000608"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HDV7388485.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     TIGLREGSVSAVKAKNAGFEVVSVSEASKIADVIMILAPDEIQADIFNVEIKPNLSEG
                     KAIAFAHGFNIHYGQIVVPKGVDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIITEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
     gene            12047..13129
                     /locus_tag="RJ267_000609"
     CDS             12047..13129
                     /locus_tag="RJ267_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HDV7388486.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVSSVKP
                     DYFIDKQEDLISLNKDHYEIGIFQENEFDNNKSVSILEQKIQEIDDLNTSLNEQNLSS
                     VEQNLSLEQNQSLEQNFILKDTNLTQDQNLTFNEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGLKALNLKLNPSFFPPDKNHSETPKLALKFDFYMVHLPLAAINYNKPEIDTLNPN
                     DSKERIFKKIKQIKKDFKDLRYINNHTGSLFTSNEEAMRKLYEALKNQNIFFVDSKTI
                     GNSKANKIAKELSMPYIQRDVFLDNEDDVNYVKKQLESAVKLAQKKGFVIAIGHPRKN
                     TFKALEQSKDLLKGVDLVYLSEIYGK"
     gene            13119..13892
                     /locus_tag="RJ267_000610"
     CDS             13119..13892
                     /locus_tag="RJ267_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HDV7388487.1"
                     /translation="MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSR
                     RMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITASMAAMPNTIGIFANGLDQIYPR
                     TNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
                     AKLALELNKPLYVLPQRLEESTGTNFLLKENKSKLICDFKEFVSEFASIDINQDEFLE
                     FCKKGVSVDEALKIYGQKVYEYELEGKISIEGLFIRVLA"
     gene            13889..14272
                     /gene="ruvX"
                     /locus_tag="RJ267_000611"
     CDS             13889..14272
                     /gene="ruvX"
                     /locus_tag="RJ267_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HDV7388488.1"
                     /translation="MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKN
                     LLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV
                     ANTRKKDGKLDSLSAFIMIKDYFAL"
     gene            14301..15140
                     /locus_tag="RJ267_000612"
     CDS             14301..15140
                     /locus_tag="RJ267_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HDV7388489.1"
                     /translation="MQNILSSFAQEKNVCVFANTLKTSIEELEKEFLKQNLKFKKINV
                     YCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQSVLDMCAAPGGKSI
                     NLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKIL
                     LDAPCSTFAKIGFDLEKSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEEN
                     EEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDYDGFFIAKLR
                     KLC"
BASE COUNT         5284 a         1966 c         2674 g         5257 t
ORIGIN      
        1 tggggtgtgt tttgtgagtg tgaattttca agcaatttat cagaatttga aaaaatcaat
       61 gaagaaaatt tcaatacttt tttaaatctt gcttttgatt tgttaagtca agaaaaaaag
      121 atttatttaa aagataaaaa tggcatttat gaattttctt tgtttaagaa cgaatttata
      181 ggagattttt tacttccttg tgatattaaa gctataaatt cagtttttgt ttgttcaaat
      241 gaaaatttaa aacttcttgc aagtttggaa aaacctttga tgaagctaag gcttaatgcc
      301 atatttagaa aaaatcacaa tcttgatttt aatgatttta aaatcagact tgctagggat
      361 ttgttttgtt ttgctttagg tttaaaactt tttgaaaatg aatataaatt tttaagcgta
      421 aaaaagatag aagaatatca aaaagatttt tatatcagtg ctttagatga gcaagtggtg
      481 gttttggaag gctttgaatt tatcaatgct aaggcaagag agcttatttt ttctaaagaa
      541 gataaaaata tggcaagaat ttcttatctt gtaagccgtt ataaagaaaa ggcttttatt
      601 ttagagctaa gtaaagatga tgaagatatt ttgcttatca acaaagagct taatttgctt
      661 aaactttgct taccaaaaca cagcaaagag ctttatgaag agatcaaaaa agatgaaatt
      721 ggtgcaaggc ttttagaaaa ttttagcaag gaatttcctc ttttagatga aaattttgag
      781 cttcaaaaca atttttattc cttgtttggc ttagtaggaa gagtgctaaa tttgggtaaa
      841 aatttacaag agagtgttag cgagctttta aaaatcgctg atgagtcaaa aatgcctcgt
      901 ggagtaaaga ttgattatcg tttgaaagaa gataaaagtt ttgattatac aagaacttta
      961 agatctgcta tgagttttat gttagcaggt gtggatagtg ctaatatcgc ttatggagcg
     1021 gttgagagtt tggcttattt cttgcgtgat acttatgatg aattaagaga gaaaaagcaa
     1081 agcgacttag cgcttataag cggctctttg tttgaacata aatctttact taaaaatact
     1141 ttaaaacatc ttaaaaattg tcagttaagc gatgtgccac ttaggatata agatcaaaat
     1201 ttcaggtcta gttcaagggg tgggttttcg ccccttagtt tatgaactag ctttgaaatc
     1261 aaagcttttt ggagaagtaa gaaatgatgg ttttggggta gaaatcatcc ttgcttgcac
     1321 tcaaaaagaa tgtgaaaatt tcatagaaaa tttaaaaaat catctcccgc ctttagcaag
     1381 aatagatcag cttataatca cgcaaatttc tatttcaaac tatgaaaatt ttagcattac
     1441 tccttcttta gagaatacaa aaagcacgcc tatgttaagc gattttgcgc tttgtaagga
     1501 gtgtaaaaaa gaattttttg atgaaaaaaa tccacgcttt ttgtatccct ttatcacttg
     1561 cacacattgt gggccacgct ttagtattat aaaaagtctt ccttatgata gagcccatac
     1621 ttccatgcaa gaattattga tgtgtgagtt ttgtaaaagc gaatacgaag atcctaaaaa
     1681 taggcgtttt catgcccagc ctattagttg tcctaagtgt aaaatcaatg tttttcttaa
     1741 aaatccaaag ggtgaaattt tagccaaaga tcaagaagct tttatacaaa gtgcgaagtt
     1801 tttaaaggaa ggtaaaattt tagccattaa aggcatgggc ggttttcatc tcatgtgtga
     1861 tgcttttaat gaagaagctt taaaaactct aagacttaga aaaaatcgcc ctaaaaaacc
     1921 ttttgctttg atgtgtaaag atttacaaag tgctaaagaa cttgccttta tagatgaaaa
     1981 agaagaagct ttgcttggtg gggttttagc tcctattgtg attttaaagg caaaaaaagc
     2041 cttttcttta atcgctcctg atgttgataa aatcggcatt atgttagctt atacaccttt
     2101 acatcttttg ctttttgagt attttaaagg aagccttgta gcaacgagtg caaatttaag
     2161 cggagaaagt atcattaaag atgagtttaa tttgcgtcaa aaacttgata aagtttttga
     2221 tttttatttg gattatgata gggaaattat caatgcaagt gatgacagca tagctcaagt
     2281 ggtaaatggc aaaactatgt ttttacgcac ttcaaggggt ttaaatccct tttatttgga
     2341 aagaaatttt aataaaaaag gcactttttt agctttgggt gcggaactta aaaatgaatt
     2401 tgtgattttt tatgaaaata aacttttaat ttctccttat ataggggatt tgaaaagtct
     2461 tgatgtgcat gagagatttt ttaaactttt agaatttttt aaacaaaatt atgatttgaa
     2521 atttgatgcg attttgtgcg ataaacaccc gcattttagc tatgcaaaag aatttgaaga
     2581 aaggattaaa atttctcatc attatgcgca tttttgtgcg gcttattttg aatacgaaga
     2641 aaattttgca aaagatgaaa aggctttagc ttttatttgt gatggaacag gttatggcga
     2701 agatggtaaa atttggggtg gagaagtttt tgtaggaaat ttaaaagaat atgaaagaat
     2761 tgcacatttt gaaaatttca ctcttataaa tagtgatatt aaaaatatac aaaatttggc
     2821 tctaagtctt atttttcatt atgatttaga agataaggct aaggattttt tagcaaaaat
     2881 tccaaaaatt aaacttaaaa atcttaaaaa aatttattct cattctaact tacaaacaag
     2941 ttctttagga cgcattatcg atgcttttgg aagtattgtt tttaacttag aaaaaagttc
     3001 ttatgaagct caagttggct taatgtgtga agctttttat gataaaaatc ttgatttttc
     3061 ttataagctt tttgtagaaa aagggcaggt taattttaaa aatttaatcc taggggcttt
     3121 gcaagatgaa aaaactaagg caattacagg tatgtttaat gccttagcaa attttatcat
     3181 agattttagc aaagattatg atttaaaagt gcttttaagt ggaggagttt ttcaaaacaa
     3241 aaccttgctt gaaattttaa aagctaaaaa ttttgatttt tttgtacctt taaaatatcc
     3301 ttgcaatgat agctccatag ccttaggaca aatggtacat tttttaaatt tagaaaaata
     3361 aagcaaatat tctaaaaact cataattttt taatgctttt aaggttaaaa tgaaacaaaa
     3421 aatataaagg aaagaaaatg tgtaaagatt gcggctgttc tataaattca agccatacgc
     3481 atgatcatca tcatgatcac caccatgaaa atccaagctt aaaagaaagt aaaaccatag
     3541 aagtgatttc taaaatttta agcaaaaatg atgaagaagc taagcacaat agggcacatt
     3601 ttaatgaaac caacacgctt tgtatcaatt taatgagttc tccaggtagt ggaaaaacta
     3661 cgcttttaga aagcacgatc aaggctttga aaaatgagct taaaatcgct gtgattgaag
     3721 gggatttgga aaccaataat gacgctataa gagtaaaaaa tgctggagct ttagcgtatc
     3781 aaatcactac agggcaaagc tgtcatttgg acgcttttat ggtgcatgag gctttgcatc
     3841 atttagccat tgatgatgtg gatttgcttt ttatagaaaa tgttggaaat ttagtctgtc
     3901 ctgcaagtta tgatttagga gagcatttaa atgtggtttt gctttcggta actgaaggaa
     3961 gtgataaacc gcaaaaatac cctgtgatgt ttaaaaaggc tgatatagtt ttaatcacaa
     4021 aggcagattt agctcatcat tttgattttg atgttaaaga ggcgactagg ttgattaaag
     4081 aattaaatcc tagagcagat attatcaccc ttgatgcaaa aaatgacacc aatatggagc
     4141 tttggtataa ggtgcttaaa cttaaaaagg agctttttta atgtgtttgt ctataccttc
     4201 tgaaatttta gaaatcgatg agttaaacaa tgctttagtg caaactttag gcgtgaaaag
     4261 aaaagtgaat ttagatttga ttgatgagcc tttaaaacaa ggcgattatg tcttaatcca
     4321 tgtaggcgtt gccatggaaa aaatcgacaa agaagctgca ctagaaagca ttaaaaccta
     4381 tcaagaaata gtagaaaaaa tgaatagtgg agagataaaa agtgatgagg gggatttagg
     4441 tttaaatgaa tttcatcgat gaatttagag ataaaaaaag cattttagct ttaaaaaaac
     4501 tcatagaaca agaacttaaa aatcctatca acatcatgga aatttgcggt gggcatacgc
     4561 atagcatcat gaaatatgcc ctgccttcta ttttgccaaa ggaaattaac ttcatccatg
     4621 ggccaggatg tcctgtttgt gttatgccaa gagttcgcat tgatacagct atcaagttag
     4681 cctctatgaa agatacgatt ttttgtactt taggagatct tttaagggtg cctggaagtg
     4741 aaatttcttt actggattta agagctaaag gggctgatgt tagagcgctt tattctccgc
     4801 ttgaggtttt ggaaattgct aagcaaaatt taaacaaaaa tatcatcttt tttgctatag
     4861 gttttgaaac cactacgcct atgagtgctt tacttcttca aaagcttata gaagagaaaa
     4921 taaataatgt ctttttccat atcaatcata tcacagttcc agcacctgta gaagcgatca
     4981 tgaatgatga aaatgtaaaa atcaatgctt ttttaggtcc ttctcatgtg agtgtgatta
     5041 caggttatgg tatttatgag cctttagcag caaagtttaa aacccctata gcggtgagtg
     5101 gttttgaacc agttgatatt ttagaaagtg tgttaaatat cataaaacaa agcaatgaag
     5161 gcacttttaa agtgtataat caatacaaaa gagccgtaag taaagaaggt aatgttaaag
     5221 cacaaaattt agtaaaaaaa tactttaagg tgtgtgattt tgaatttcgt ggcttaggac
     5281 ttattaaaga tggaggcttg gagttaaaag aagaatttag cgcttatgat gcgagtaaaa
     5341 aattcgattg cgcggtgcaa agcaaaaatg aaagcaaagc ctgtatttgt gggcaaattt
     5401 taagaggttt ggccaagcct tatgattgta aagtttttgg caaggcttgt acgccaagaa
     5461 gtcctatagg aagttgtatg gtttctggcg agggtgcttg tgcggcgtat tataaatact
     5521 caaaggtgaa tgcatgaaaa atatttcctt agcccacgga ggcggtggag aagagatgaa
     5581 tgagctttta actaagcttt ttaagatctt tgataatgaa attttaaacg caaataatga
     5641 tgcagcgatt ttgggaaatt tggctttaag cacggattct tttgttttaa gtccgatttt
     5701 tttagatgaa gaggttaata taggtaaact ttgtgtttgt ggttctatta atgatgtttt
     5761 gatggtgggt gctaagccaa aatatctaag cttagggctt atcttagaag aaggttttga
     5821 gctagaaaaa ctagaacgca ttttaaaaag cattaaagaa gaatgtgaaa aatgtggagt
     5881 tatgttagtt tgtggcgata ctaaagttgt tcctaagggt aaagcagatg aaatttatat
     5941 caacactaca gccttaggtg aaattatttc taaaaaagaa agtaaaaata tcaaagcagg
     6001 gcttagcata cttctttcag gtgatatagg aaggcatgga gctagtgttt taatcaaaag
     6061 aaatgagtta gaagctaatg ttaaaagtga ttgtaaggct ttagataaag aggttttaga
     6121 gcttttagaa aaagatataa aggttgtagc aatgagagat gctactcgtg ggggacttag
     6181 tgcggtttta aatgagtggg caaagcaaag tggaaatgat cttttgatct ttgaagaaaa
     6241 aatcatcgtt caagatgagg ttttaggact ttgcgagctt tttggttatg aagcctatga
     6301 gcttgcaaat gaaggcactt ttatactttg tgtggaaaaa gaagatgggt taaaagcctt
     6361 ggaaattcta aaaaaataca atgtaaatgc gagtattata ggagaagttt tagaagagaa
     6421 aaaagcacgc gtgatcttac aaaacgctta tggagcaaaa cgctttttag aaagccctaa
     6481 aggcgaactt ttaccaagaa tttgctaatg cacgaattaa gtatagtaga atctttaatc
     6541 gaactttgtg aagaaaatgc cttaaacaat aaggcttgta atgtgcaaga aatttatgta
     6601 aaaatcgggc gtttaagcgg tatagaagtt gatcttttta agcgttgttt tgaaactttt
     6661 aaagaaaact caaatatttg taaaaatgct aaacttttta tagaacttgc tccgcttgaa
     6721 attttatgct taaaatgcga tcaaacaagt attttagaag aaaatgtttt taagtgtcct
     6781 aaatgtcaaa gtatagaata taaaatcaca caaggtgagg acttacatct tatgcgactt
     6841 gtgatggagt gaaagtaaaa tcaataaatg attttacttt ctgctttcaa atgctttgat
     6901 aatatctgct ttatattgat aaatatcttc taatttttct atattataac ttgctccatc
     6961 cggaaaacta atagattttt tgcttgtatt aaaatataat ctacatatcc acttagtaac
     7021 tttgccttga tataaaatac taaaatagct taaagtatct ttgtaactta catcttcaag
     7081 attggcgctg acactagcaa gaattgattt tactatatag aaaccttgta attcttcttc
     7141 tgttgtgaca atatctttac tttcatcaat ttgctcatca ttttcatcat cgtttatgtt
     7201 ttgaagattg tttttaatgc ttgtgatttt ttcataagct aaatcattaa taatttcttt
     7261 aaaagatttt ttaatgtaat ttttgaattc ttctaaaaca gcactagtca ttcttttttc
     7321 tgtcatttgt ttagcaaaaa aacttgtaaa ttcatcgctt ggattttcta tttcactttt
     7381 aaaaatttct tgtatacttc ggtaatattt tttctccata gcaatgctta gaatttcatc
     7441 taagtttaag tcagtgcaaa taaaacgttt tagatcttta atatctctag gtttaagttt
     7501 ttcaagatta acaactaaaa atggtatttt atccataaga ttttgttgtt caatatctgt
     7561 aaaaaatcta tattcaatac cattggtaag aatggcaaat ttaatactag gattagtgtt
     7621 aaaatatctt acaagctgat tgttatgatt atctaaattt tcagtatgat ttttagcttc
     7681 aattaaaata aaaggttttg aatctttgaa aatagcataa tccacttttt cgcctttttt
     7741 agttcctata tctgctgtat attctggcac aacaatacta gggttaaaaa catcataacc
     7801 taatgttttt aaaaaaggca ttataaaagt catttttgta gcttcttcag tattgacaag
     7861 tgttttgcgt tcagctattg tttcaacgat agcatttaat tgattttcaa aatccatttt
     7921 cattcctttt gtttttatta aaagtattat agcaacattt tttagtttta taataaaaaa
     7981 agtgatttta atttttataa ttttactatt tagcttttca aaatccttgc aagtttaagc
     8041 aaatttgaaa tcaaaaattc tttttttacg agcttagaat tggttttaag ctcgtattcg
     8101 cttttaagca aaagagtgaa aatttcttta tattgttcga tttttaaact aaaggcttga
     8161 gagcttaaat tttgtcccac ttgaggaggt ggagtatagc ctaaaagatc tttaaagtca
     8221 attttaccat tgactttagc ataaagtgcg attttaaaca aacgataaaa agaattatac
     8281 aaagagttga ttaaagcaat ttcattaaaa ttatctaaaa ttttttcaag ttcgctttta
     8341 aagtcttgtt tttttaaaat tttctcaaaa aagctttcaa aacttcctgt attcaaacta
     8401 tagcagtatt gttctatggt tttttcatct actcttaaac cactaaattt attaagctca
     8461 ctcgcagcaa gatataagtt ttcatcaaaa cttgtaaaaa gagtaaataa agcattttga
     8521 gtgatttcaa cccctagttg ttttgctttt atgcttaaaa gttccacgcc ttctttagct
     8581 ccgttagctt tgaaaaatct tacaaaatga ggagagaaaa ttttttctat atcgctttgt
     8641 ttagaacttt catcataaag ctctaaaaga aagaaattgt ccgcattgtt tttacaaaga
     8701 tctactaaaa ctttaagatc ttttgttgga atttttttag aagttttgat ttctagtaat
     8761 tttttttcgc taaaaagcga tcctgcgctt aaaaaatcac tcgcacgagt gaagttgtat
     8821 tcttcaaaaa aaagtttcaa agtttcatcg ggcttatatt tttcttttat aaattcagca
     8881 taaagttcgc tttgaaaatt atctgctcca taaagaaaga aaaaattagg tattgaatct
     8941 ttagaaagta agatttgaag ctcttttcta tacattttct tcctttataa gtctttgggt
     9001 gattttagca taaatttttg ccataactat atccgcttcc atgatttgta cttcaacatt
     9061 ttctagcaaa tttacacgcg tatcataaag gattatatcc gctcctttga tttcatcatc
     9121 tagtttggct atgcaaactc catcattttg gacaactaaa gctttaaatt ttttgcctat
     9181 atttttagct gcccatctag caaattttct atccataaaa tcaaaagcaa ccttatccgc
     9241 ctctctttca agtgtgctaa gattctcaca agtgctttct atgtttaaaa gtagataatt
     9301 aaaaagtttt tcatcgtttt tttgcttggc ttttaaaagt ctgtgcaaaa taagatcaga
     9361 ataccttctt atagggcttg taaaatgtga gtatttatca aaacctaagc caaaatgtcc
     9421 cgcattgacg ctagaatatt ccgctttttt ttgtgctttg atgatgagtt tatctacttc
     9481 tgctcttaaa tttaactcat cagctaaagc ttgtatgtcg cgtatgagct caggaagatt
     9541 gggcttaaaa tttacatcga tgcctaattc gcgtaattca tttaaaagct tatcgatttt
     9601 tcttacatca gcacttaagt gatttctaaa aacacctata tctatgagtt ttgctgcggc
     9661 tttattggct aaaagcatac aatcttcgat caaattatgc gaaggcgtgt ctttttcaaa
     9721 aactgtactt tttagactta aattttcatc taaattcatt cttaattctt cggtgcgaaa
     9781 ttcaaaggca tttttaagac gcattttgcg taaatttttt gtgatttcaa aaagctcata
     9841 aagccatgaa agctctttta aatcaggttt ttgtattaaa atttcatcaa cttcatcata
     9901 attaaaacgg cgttttgagt tgataatacc ttcaaaaagt tcttctttta tgactttatt
     9961 ttcatgattg agtgtgattt taaaacaata cgctaagcga tctaaatgag gttttaaaga
    10021 acagatattt tcacttaaag gacgaggtag cataggtata gcaatatgtg gaaaataaat
    10081 agaaaatcca cgatttcttg cttctttatc tatagcacta taagcataaa catattcgct
    10141 aacatcagca atagctacat aaatttctcg tttttgagtg tcaaaataaa tcgcatcatc
    10201 aaaatctttt gcatgtatag gatctatggt gcaaaaaggc aaggctctta aatccatgcg
    10261 attttcatac atactcgcat caacactatc gccgtttgct agagcttctt tgatgcaagc
    10321 gtcgctaaat tcgttatttt tattaaaaag agctaaggag attttttcat ctacgctttc
    10381 atcatcgata tgtcctaaaa cttctatgat attgttattt tcattttcta tttttaaaat
    10441 tgtccctaaa ggcagtgctt ttaaggattt ttgagaagct tttaaggcag tgcttaatcc
    10501 tgttttgata ttcattccaa gcacggcttg gccatacctt ttggtgatca ttaaagaggt
    10561 ttcattggct ctttttagaa ccaaaatcac ctttgcactg gggcgttttt tctttaaagg
    10621 tagaagtttt actgcgacta tatctttata gtttgcgcct tttaggtttt tgttttctat
    10681 caaaagatct tttttgaaac tttcatcaaa gcattgtaaa aaacctgtgc ctttactcga
    10741 aatatcaagt actccaaagg caaaaccatt gttaagatag tatttgtttt tgtgttcttt
    10801 aatgatatga ttagttaaaa gttctctgaa aatttgttta aattcattgt ttacttcgtg
    10861 agagctaatg ccataactaa gactgtttaa aaattctttc acttttgata ctttatgatt
    10921 ttttgtaaaa ttcttacata aagtttataa aaaaaatatg aaatttatac tttaattgct
    10981 ataataatac ctttaatttt tgaattttta aggagtgaat atggctatta cagtatatta
    11041 tgataaagat tgtgatttaa atttaatcaa atcaaaaaaa gtagcaatta taggctttgg
    11101 ctctcaaggg cacgctcatg cgatgaattt aagagataat ggcgtaaatg taactatcgg
    11161 acttcgtgaa ggtagtgtaa gtgctgttaa agcaaaaaat gctggttttg aagtggtgag
    11221 tgtgagtgag gcttctaaga tagcggatgt gattatgatt ttagctcctg atgaaattca
    11281 agcagatatt tttaatgtcg aaataaaacc aaatttaagt gaaggcaagg ctatagcttt
    11341 tgcacacggt tttaatatcc attatggtca aattgttgtt ccaaaaggtg tagatgttat
    11401 catgatagca cctaaagcac caggtcatac agtaagaaat gaatttactc taggtggtgg
    11461 cactccttgt ttaatagcta tccatcaaga tgaaagcaaa aatgctaaaa atttagcctt
    11521 aagttatgca agtgcgatcg ggggtggacg tacaggtatt atagaaacaa cctttaaagc
    11581 cgaaacagaa acagatcttt ttggtgagca agctgtgctt tgtggtggac ttagtgcttt
    11641 gattcaagca ggttttgaaa ctttggttga agcaggttat gaacctgaaa tggcttattt
    11701 tgagtgtttg catgaaatga aactcattgt ggatttgatt tatcaaggtg gtattgcaga
    11761 tatgcgttat tctatttcaa atactgcaga atacggcgat tacatcacag ggccaaagat
    11821 tatcactgaa gagactaaaa aagcgatgaa aggtgtttta aaagatatac aaaatggtgt
    11881 ttttgcaaaa gattttatct tagaacgccg tgcaggtttt gctagaatgc atgcagaacg
    11941 caaaaatatg aatgattctt tgatagaaaa aacaggacgc aatttgcgtg ctatgatgcc
    12001 ttggatcagt gctaaaaaat tagtagataa agataagaac taaacattgt caaagaaaaa
    12061 attagttcaa attcagcgtt atttaatcat agctatactt tttttacttt gcatagcttt
    12121 agctttggga attttagtaa aatatcaaaa ttcccaagat gtttcttctg ttaagccgga
    12181 ttattttatt gataagcaag aagatttaat ttcattaaat aaagatcatt atgaaattgg
    12241 tatttttcaa gagaatgagt ttgataataa taaatctgta agtattttag agcaaaaaat
    12301 tcaagaaatt gatgatttaa atacaagttt aaatgagcaa aatttaagca gtgtggagca
    12361 gaatttaagt ttagagcaaa atcagagttt agaacaaaat tttattctaa aagatacaaa
    12421 tttaacccaa gatcaaaatt taacttttaa tgaagatatt catttaaata aaatttctaa
    12481 aaaaccaaaa cttgccatta ttatcgatga tatggcaaat gcaagtcagg ttagaggttt
    12541 aaaagcttta aatttaaagt taaatccttc tttttttccg ccagataaaa accatagcga
    12601 aacgccaaaa cttgctttaa aatttgattt ttatatggtg catttacctt tagcagcaat
    12661 taattacaat aaaccagaaa ttgatacttt aaatccaaat gatagcaaag aaagaatttt
    12721 taaaaaaatc aagcaaatta aaaaagattt taaggattta agatatatca ataatcacac
    12781 aggaagttta tttacaagca atgaagaagc tatgagaaag ctttacgagg ctttaaaaaa
    12841 tcaaaatata ttttttgtag attctaaaac tataggaaat tctaaggcaa ataaaatcgc
    12901 taaagaactc agtatgcctt atatacaaag agatgtgttt ttggataatg aagatgatgt
    12961 taattatgtt aaaaaacaac ttgaaagtgc ggtaaaactt gcacaaaaaa aaggttttgt
    13021 tatagccata ggacatccta ggaaaaatac ttttaaagct ttagagcaaa gtaaggattt
    13081 gttaaaaggc gttgatcttg tgtatttgag tgaaatttat ggcaagtgaa attttgcctg
    13141 atgaattttt agaacttttt aaagatttaa aaaagcctcc taaaaaatta cactataaag
    13201 gaaatttatc tttattaaaa caagataaaa tcgctattat aggttcaagg cgtatgagtg
    13261 tttatacgaa aaattgtgtt ttttccttag cgagtatgct taaaaatgct catctttgcg
    13321 tggtaagtgg cggtgctttg ggtgtggata tcaccgcaag tatggcagct atgccaaata
    13381 ctataggtat ttttgccaat ggtttagatc aaatttatcc aagaactaat gaaaaaatca
    13441 ttaaacaaat ttatgaaaat gctttagctt taagtgaata cgaagatgat tatttgccaa
    13501 aaaattatga ctttttacta agaaatcgtt tggttattgc tttaagcaag gccgttgtgg
    13561 ttgcacaagc agatataaaa agtggttcta tgcagagtgc aaaacttgct ttagaactca
    13621 ataaaccttt atatgtttta ccacaaagac tagaagaaag cacaggaact aattttcttt
    13681 taaaggaaaa taaatcaaag ttaatttgtg attttaaaga atttgtaagt gagtttgcaa
    13741 gtatagatat aaatcaagat gagtttttag agttttgtaa aaaaggtgtg agtgttgatg
    13801 aggctttaaa aatttatgga caaaaagttt atgaatatga acttgaggga aaaatttcca
    13861 tagaagggct ttttataagg gttttagcat gagagctttg gctttagatg taggtttaaa
    13921 acgcataggt gtagcgcttt gcatagataa aaagatcgct ttgcctttag atgcagtttt
    13981 aagaaaaaat cgcaatcaag ccgctaatga aatcaaaaat ttacttaaaa tacttgaaat
    14041 ttctttactc attgtaggca ttcctaaggg tggatcaagt gaagaagaaa tgacaagacg
    14101 cattaagcat tttgtttctt tgcttgaatt tgataaagaa atttgctttg tagatgaaag
    14161 cggaacaagc aaagaagctt taggatacgg cgtagccaat acacgcaaaa aagatggtaa
    14221 attagactct ttatccgctt ttatcatgat aaaggattat tttgctctct agaatagaaa
    14281 aactttatac caaagatgaa atgcaaaata ttttatcttc ttttgctcaa gaaaaaaatg
    14341 tttgtgtatt tgcaaatact ttaaaaacta gcattgaaga attagaaaaa gaatttttaa
    14401 aacaaaattt aaaatttaaa aagatcaatg tttattgtta tttgtttgat gccaaagata
    14461 aggctatctt aagttctatg aaagctttta atgaggcgca cttttatata caaaattatt
    14521 cttcttattt gtgtgcttta aatttagagg tcaaagcagg gcaaagtgtt cttgatatgt
    14581 gtgcagctcc gggtggcaaa agtatcaatc ttgcaaattt tatgcaaaat acaggttatt
    14641 tagcttgcaa tgagatgagt agggatagat tttttatttt gcaaaaaaat cttaaaaatt
    14701 acggcgtgaa tgctaaagtt tttatgaaag atggtaaaaa tataggcaat ttatgccctt
    14761 taaaatttga taaaatctta cttgatgcac cttgttcaac ttttgctaaa ataggttttg
    14821 atttggaaaa aagttataaa gaaatcaaaa atattgcaaa aactcaaaaa aaacttctac
    14881 attctgcttt aaaggcatta aaaataggcg gagagcttgt atatagtact tgcaccttta
    14941 ccaaggaaga aaatgaagaa gtgatagaga atgctttaaa aagtgagttt aaattagagc
    15001 ttttagatat tgatttggaa aatgttgagg ctaaagcagg gcaaagtgaa gaatttgctg
    15061 aaatttcaaa atgcagacgg attttaccaa gcttagacta tgatggattt tttatagcta
    15121 agcttaggaa attatgttaa ttgataaaat tattcacatt taaatacaaa ttcataaaaa
    15181 a
//
LOCUS       DAPIWQ010000028        15110 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.028, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000028 DAPIWQ010000000
VERSION     DAPIWQ010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15110
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.028"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            11..1417
                     /gene="aspA"
                     /locus_tag="RJ267_000613"
     CDS             11..1417
                     /gene="aspA"
                     /locus_tag="RJ267_000613"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HDV7388490.1"
                     /translation="MGTRKEHDFIGELEISDEVYYGVQTFRAVENFDISHDRLKDFPR
                     FVRALARVKKAAAMANHELGLLDKNIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTS
                     TNMNANEVIANIGLELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDL
                     AKAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMIGEDIQRVLEA
                     RKLILEINLGGTAIGTGINSHPDYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQ
                     ISGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVN
                     QVCYFVIGADVTVTFACEGGQLQLNVFEPVVAYSLFNSVVMLEKAMYTLADKCIDGIT
                     ANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLSKEQI
                     DEILTPSNMLNPHMEAKK"
     gene            1433..2770
                     /locus_tag="RJ267_000614"
     CDS             1433..2770
                     /locus_tag="RJ267_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDV7388491.1"
                     /translation="MDIMIILQVIVLLGAIFIGIRLGGIAIGYAGGLGVVILGLVLGM
                     KPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWLL
                     TILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSGV
                     LEPLGWNYPTLIGIWISTTFVACMLAAFIVSLITPMDLSKDSVYQERLKAGLVKDAGA
                     VLHGEDKPGAKLSVVIFLITVLAVVLYATAISSNIKWIDPVVVSRDAAIMSFLLTAAT
                     LITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASIKEVAGDWVKQT
                     PAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALFV
                     LPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFIPGVLAIAIAVALGFVLAPMLI"
     gene            2878..4239
                     /locus_tag="RJ267_000615"
     CDS             2878..4239
                     /locus_tag="RJ267_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7388492.1"
                     /translation="MKIKVGLIFSGIACLFLTACVNQVKQNTTFENTLTQKYCGDDFF
                     NQNLEKIKKNDDVIYTGLNAGLIARNCGDFNKSNVFFDAVEESYKYDVDLENVSPKAA
                     KFIGTTLLNDNIVDYDGSLYERIMVNIYKALNYMEEDDYENARVEFNRVLMRQDKAKE
                     YFAKEIEKNRADLDKAKEDKNYDKNMNENSKVIEAQYDNLFKEFDTTKNFINPYATYL
                     ASIFFFMDKDYRKAADLFREVAIIYPKNKTIKKEAKIFKEYATKIKVKKAKKYVFVVY
                     ENGFGVVKDEFALTLPFIVDKKIISTNIALQTLKKREASFANLNINGQNTNDFVDLDN
                     IVATEFKINMPAMIAKALAQTIIKTTLNVAVANNDSTGGWLSLATAVATAATNKADVR
                     SWRGLPKSIAIATIENDGNLEIKDPQGNILFQKSLDKNKNALVIVRSFAPYLPASVAI
                     MEK"
     gene            4249..4617
                     /locus_tag="RJ267_000616"
     CDS             4249..4617
                     /locus_tag="RJ267_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HDV7388493.1"
                     /translation="MKKNILFILMFLLSACAPSYQINSNQNTVILGSNLPKSLVKQFQ
                     KRINSNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVIL
                     RKLASDTRANDFRLEIKAKN"
     gene            4641..5264
                     /gene="lpoB"
                     /locus_tag="RJ267_000617"
     CDS             4641..5264
                     /gene="lpoB"
                     /locus_tag="RJ267_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HDV7388494.1"
                     /translation="MKKTKILGTALIGALLFSGCAQTAYTDGKASQVKKGDALTLGLD
                     RQDFESAAETMINSMLSDPAFANIKPGTRKVIAIGRVVNDTPQRIDTEKLTAKITSAL
                     RKSGKFVLTSAVAAGGALDSMSEDVRELRDNDEFNQKTIAKKGTLVSPDFSLAGKIRQ
                     DNVKLSNGKTQVEYFFLLRLTDLTSGLVYWEDEQTIDKTGSSKSVTW"
     gene            5325..6683
                     /locus_tag="RJ267_000618"
     CDS             5325..6683
                     /locus_tag="RJ267_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004276598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388495.1"
                     /translation="MIFKRIRNEKILFIGSLVMASLLYAQGSQPVEITQQDINTQNEM
                     SDASTKDITPKSIEDFFEEFADNFGIEYGITKDGKTFYTGKSTVAVNDTDPQFAQALQ
                     NAYQKAMLNLQSEFIRDAFGRIATSKIQNYEADNSTNAKEFDELPKGDKVDQILNKLT
                     QLAGAQLDKALKDLGIDTNSLSEDRKKTLLKQEFLNKTMTNAIGSMSGLVPVQTIVTQ
                     RRGEYDVGVVAVISNKTRQLAKDMALARQSAIKGKGKAISEYLPKDTKGFLNEYGIRL
                     VYDENGAPIILSYGNWGYVADPSNAKKTNILEDRAKETALTMADAAIIEFINTNLSLK
                     DERTTGDTYEEIIKQSINVNDSSTQEQTQNITNIIDKVNSKIKASASGKIRGIRTLKK
                     WSYTSENGIEHVGAVRFYSYENLANTNEALNSKSNATKNEAKKSSSIQRSSNVVNSMD
                     DF"
     gene            6693..7895
                     /locus_tag="RJ267_000619"
     CDS             6693..7895
                     /locus_tag="RJ267_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388496.1"
                     /translation="MKIIKILFLGLFLSLSLNAKVITTTSTKSSTGEGTGLTREDAIN
                     NAIIEAIGKMSGVSINSLKKSNTSVSTDNSGSNIQDNYSEQISKATKGRADTYEINSV
                     EQDANGKYTANVTIFKTTTTKKYQAPGLSADNRRSITVFDSTPDAAKRGIGSALQQKI
                     ISDLLQSRKFNVLDRDSSGYYEMEKALIKSGDAASDEVYKLKNMLATDYILLFSISGL
                     EGKQKTSNLTGKSKTEIEVIVDYRVLLFATRQIKFSNTLSMKVNLKDNSLSANETALK
                     QIANRIAGDILNAIYPLKVASVENNEVIFSQSLNQGDVYECFALGKVIKDTYTKENTG
                     RVESKTGSIEITRTSPKFSYAKITEGSVKVGDICRPLSNTGSGNGYTIGRDANYQTQE
                     GGGVNLGF"
     gene            8054..8362
                     /gene="rplU"
                     /locus_tag="RJ267_000620"
     CDS             8054..8362
                     /gene="rplU"
                     /locus_tag="RJ267_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HDV7388497.1"
                     /translation="MYAIIKHSGKQYKVSVGDELKLDHFEAESKASIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            8373..8627
                     /gene="rpmA"
                     /locus_tag="RJ267_000621"
     CDS             8373..8627
                     /gene="rpmA"
                     /locus_tag="RJ267_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HDV7388498.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            8734..9786
                     /gene="obgE"
                     /locus_tag="RJ267_000622"
     CDS             8734..9786
                     /gene="obgE"
                     /locus_tag="RJ267_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HDV7388499.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDAQTNE
                     ILLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVNEYNSFVMADIPGIIE
                     GASGGKGLGLAFLKHIERTSFLLFVLDPMRQMPLKEQFIVLRKELEKFSNELFGRKFG
                     IMISKSDSVRLGEEFAEQIALNINELDNYLKEINNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKTLRNNKKNLTI"
     gene            9891..10646
                     /gene="proB"
                     /locus_tag="RJ267_000623"
     CDS             9891..10646
                     /gene="proB"
                     /locus_tag="RJ267_000623"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDV7388500.1"
                     /translation="MKRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVT
                     SAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFD
                     SRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVI
                     LSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLL
                     EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE"
     gene            10720..11637
                     /locus_tag="RJ267_000624"
     CDS             10720..11637
                     /locus_tag="RJ267_000624"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HDV7388501.1"
                     /translation="MKKIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQI
                     LTPSDTKAFLSQNYPSIPIFTPSSLKDKNIIREIKDLNPDFIVVAAYGKILPKAILDL
                     APCVNLHASLLPKYRGASPIQSAILNKDEKSGVCTMLMEEGLDTGAILESLECDIKDK
                     NSSEVFELLANLAAKIILSTLLNFDKITPKKQEESLATLCRKIKKEDGLINLQNAREL
                     YQKYLAFTPWPGVFLENGLKFLELELVDELKQNAKMGEILELEKESFLLACKQGVLRI
                     KKLQESGKKALDGRTYLNGKRLKSEDSLC"
     gene            11600..12253
                     /locus_tag="RJ267_000625"
     CDS             11600..12253
                     /locus_tag="RJ267_000625"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HDV7388502.1"
                     /translation="MEKGLKVKIVCVESIDSTHLFLCKQIRNGKIDENFAIYALEQIN
                     GVGSRENSWQSSKGNLHLSFCIKEEDLPKDLPLASVSIYFAYLLKEVLQEKGSKIWLK
                     WPNDLYLDDKKAGGVISAKISNFIIGGMGLNLKFAPQNTALCDIEISLKDLVSEFLQK
                     VEKKILWKNIFSKYMLEFEKSRKFSVHHEGKVFSLENSFLYEDGSILLGDKRVYSLR"
     gene            12250..13035
                     /locus_tag="RJ267_000626"
     CDS             12250..13035
                     /locus_tag="RJ267_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HDV7388503.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMLLKNQIQEVIDEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINSKLRVRGFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSVAYQNLAYSILG"
     gene            13041..13877
                     /locus_tag="RJ267_000627"
     CDS             13041..13877
                     /locus_tag="RJ267_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HDV7388504.1"
                     /translation="MGLNKDRGLSSLISDMDTVYSKELGFDKNQSTMIEIDQISPNPF
                     QPRKNFDQEALDELANSIKEFGLIQPIIVFKKNNKFILIAGERRLRAVKALGKKEILA
                     FIADIDENKLRELALIENIQRENLNPIELANSYKDLMQVHKITQENLAELIHKSRTQI
                     TNTLRLLNLDIRTQELIASGKISQGHAKVLVGLDQKDEKMLVDSIIGQKLNVRDTEKI
                     VKKIKNNESLPNQEFEDEIKKLKQILNRFGFDCKNKNNDFVIHLENIDKIKKLIKMLE
                     KL"
     gene            13938..14363
                     /locus_tag="RJ267_000628"
     CDS             13938..14363
                     /locus_tag="RJ267_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B'"
                     /protein_id="HDV7388505.1"
                     /translation="MFEDMHPSIMLATMAIFLAMIVILNSMLYKPLLKFMDERNDSIK
                     NDENKVKENSQEVLGVNDELEAIHINTREEIQKIKQSAIAAAKEEAEQILRSKKEELE
                     RKMASFYADLAVQKKELQEHLNIHLSELKQALQNNIKKI"
     gene            14374..14886
                     /locus_tag="RJ267_000629"
     CDS             14374..14886
                     /locus_tag="RJ267_000629"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HDV7388506.1"
                     /translation="MSKLFFIIFLLPLYAFGASNGSGEYDIIPRTINFLIFVAILYYF
                     VATPFKNFYKNRIVKISSKLDEIQKKLLESKAKKLDTMKKLEEAKASAAAALITAKKE
                     AEILVQNIKKETQDELDLLQKHFEEQKDYEFRKMEKELVSNTLNEIFSDPNMTLKQSE
                     IIELMMKKVS"
     gene            14889..>15110
                     /locus_tag="RJ267_000630"
     CDS             14889..>15110
                     /locus_tag="RJ267_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HDV7388507.1"
                     /translation="MENIIARRYAKAIASRADINDFYQNLCILNSAFVLPKFKNIIES
                     NEIKKERKMEFLDSFFDIKNSSFQNFLRLL"
BASE COUNT         5599 a         1957 c         2762 g         4792 t
ORIGIN      
        1 aaggttcaaa atgggaacaa gaaaagaaca tgattttatt ggggaattgg aaatctctga
       61 tgaggtttat tatggagtgc aaacttttag agctgttgaa aattttgata tttctcatga
      121 tagattaaaa gattttcctc gctttgttag ggctttggct agagtaaaaa aagctgcagc
      181 tatggcaaat catgaattag gtcttttgga taaaaatatc caagatgcga ttattaaagc
      241 gtgtgataaa attttagaag gtgggtatta tgatcaattt gtagtagata tgatccaagg
      301 aggtgctgga acaagtacaa atatgaatgc taatgaagtt atagcaaaca taggacttga
      361 acttatgggt cataaaaaag gtgaatacca atatcttcat ccaaatgatc atgttaattt
      421 aagccaaagt actaatgatg cttatcctac agctttacac cttgccttgc atgattattt
      481 aagtgatttg gcaaaagcta tggaacatct aaaaaaagct tatgagagaa aagctgaaga
      541 atttaaagat gttcttaaaa tgggtagaac ccaactgcaa gatgctgtac ctatgacttt
      601 aggtcgtgaa tttaaaactt ttgccgtaat gataggtgaa gatatacaaa gagtattaga
      661 agctagaaaa ttgattttag agatcaattt gggtggaact gctattggaa caggaattaa
      721 ttctcatcct gattatccga aggttgtaga aagaaaaata agagaagtga caggttttga
      781 atatactgtg gctgaggatt taatcgaggc gactcaagat acgggagctt atgtacaaat
      841 ttcaggtgtt ttaaaacgtg ttgcaacaaa actttctaaa gtatgtaatg acttaagact
      901 tttaagtagt ggtccaaaat gtggtcttaa tgagattaat cttccaaaaa tgcaaccagg
      961 tagttctatc atgccaggta aggtaaatcc tgttattcct gaagtagtta atcaagtttg
     1021 ttattttgtt attggagcag acgtaactgt aacttttgct tgtgagggtg gacaattaca
     1081 acttaatgtt tttgaaccag ttgtagcata tagcttattt aattctgttg taatgctaga
     1141 aaaagcaatg tatactttag ctgataaatg tatagatggt attaccgcaa atgaaaaaat
     1201 ttgttcagac tttgtctata attcagtagg tatagtaaca gctttaaatc cttatattgg
     1261 ttatgaaaat tcagcttcta tagccaaaga ggcaatgaac actggaaaaa gagtggctga
     1321 tattgcgctt gaaagagggc ttttaagcaa agaacaaatt gatgaaattt taactccatc
     1381 aaatatgcta aatcctcaca tggaagctaa aaaatagcac ttaggattta atatggatat
     1441 aatgataatt ttgcaagtaa tcgtccttct tggggcgatt tttatcggta ttcgcctagg
     1501 tggtattgct ataggttatg ctggaggatt aggtgtagtt atattagggc ttgttttagg
     1561 tatgaaacct ggtaatattc cttgggatgt tattttaatt attgccgcag ctattgcagc
     1621 aatttctgct atgcaacaag caggtggact tgattacatg gtaagggtga cagaaaaaat
     1681 tttaagatca agtcctaaat ttataaatta tttagctcca gcttgtgggt ggttgcttac
     1741 aattttagca ggaacaggaa atgcggtatt ttctttaatg cctgttgtag ttgatgttgc
     1801 aaaatctcaa aacataaaac ctagtgttcc actttcatta atggttgttt cttcgcaaat
     1861 tggaatcact gcttctcctg taagtgcagc tgtggtttat atgagcggag ttttagagcc
     1921 acttggatgg aattatccaa ctttaattgg aatttggatt agcacaactt ttgtagcttg
     1981 tatgcttgca gcttttatag tgagtttaat cactcctatg gatttgagta aggatagtgt
     2041 ttatcaagaa cgattaaaag caggacttgt aaaggatgca ggagctgttt tgcatggcga
     2101 agataaacca ggtgctaaac tttcagtggt aattttcttg atcactgttt tggcagttgt
     2161 actttatgca accgcaattt caagtaatat taaatggatt gatcctgttg tggtttcaag
     2221 agatgcagct attatgagct ttttacttac tgcagcaact ttgatcactt ggctttgtaa
     2281 agttgaacca ggtaaaattc ttgacactag tgtatttaaa agcggtatga ctgcttgtgt
     2341 ttgtgttttt ggtgtagcat ggcttggaaa tacttttgtt gcaggacacg aagcttctat
     2401 caaagaagta gcaggcgact gggttaaaca aacccctgct atgttagcag ttgcattttt
     2461 ctttgcaagt atgcttttat attctcaagc agcaaccgca aaggccattg tacctgtaat
     2521 tatcactgct ttaggaattt cagcagcaaa tccgcatgat tcttatatgc ttgtagcttg
     2581 ttttgcagca gtttcagcac tttttgtact tccaacttat ccgactttgt taggtgcagt
     2641 gcaaatggat gatacaggaa cgactagaat tggtaaattt atatttaatc actcattctt
     2701 tataccaggg gttttagcta ttgcaattgc tgtagcatta ggctttgtat tagctcctat
     2761 gcttatttaa atcaaaccct aggtttttct ctcctagggt taaaattttt tcattagttt
     2821 ttaagtatat actacgctat aatattcatt tttaattttc tttaagaaag gaatttaatg
     2881 aagataaaag ttgggttgat tttttcaggt attgcttgcc tttttttaac agcttgtgtt
     2941 aatcaggtta aacaaaatac aacatttgaa aatactttaa cacaaaaata ttgtggtgat
     3001 gattttttca atcaaaattt agaaaaaatt aaaaaaaatg atgatgtcat ttatacagga
     3061 ttaaatgcag gtttgattgc tagaaattgt ggtgatttta ataaaagtaa tgtatttttt
     3121 gatgctgtag aagaatctta taaatatgat gtggatttag aaaatgtaag ccctaaagca
     3181 gctaaattta ttggtacaac cttgcttaat gataatatag tagattatga tggttcttta
     3241 tatgaaagaa ttatggttaa tatatataaa gctctaaact atatggaaga agatgattat
     3301 gaaaatgcaa gagttgagtt taatcgtgtt ttaatgcgtc aagataaggc aaaagaatat
     3361 tttgctaaag aaattgaaaa aaatcgtgct gatttagata aggcaaaaga agataaaaat
     3421 tatgataaaa atatgaatga aaattcaaaa gttatagaag cgcaatatga caatttattt
     3481 aaagaatttg atacaacaaa aaatttcata aatccttatg cgacttatct tgcttcaata
     3541 tttttcttta tggataaaga ttatagaaaa gctgcagatt tatttagaga agtagctatt
     3601 atttatccaa aaaacaaaac tatcaaaaaa gaggctaaaa tttttaaaga atatgccaca
     3661 aaaataaaag tcaaaaaagc taaaaaatat gtttttgtag tttatgaaaa tggatttggt
     3721 gtagttaagg atgaatttgc tttaacctta ccttttatag tggataaaaa aattattagc
     3781 acaaatattg ctttgcaaac cttgaaaaaa agggaagctt cttttgcaaa tttaaatata
     3841 aatggtcaaa atacaaatga ttttgtagat ttagacaata ttgtcgctac tgaatttaaa
     3901 ataaatatgc ctgcaatgat tgctaaagcc ttagctcaaa ctataattaa aaccacttta
     3961 aatgtagctg ttgcaaataa tgactctaca ggtggatggc taagtcttgc aacagcagta
     4021 gcaactgctg caaccaataa agctgatgtg cgttcttgga gaggtttacc aaaaagtatt
     4081 gccatagcaa caatagaaaa cgacggaaat ttagaaatca aagatccaca aggcaatatt
     4141 ttgtttcaaa aatcattgga taaaaataaa aatgctcttg tgatagtgcg ttcttttgct
     4201 ccgtatttac ccgcaagtgt tgctatcatg gaaaaataag gctaaaagat gaaaaaaaat
     4261 attttattta ttttaatgtt tttacttagt gcttgtgcac caagttatca aataaattca
     4321 aatcaaaata ctgtaatttt aggttcaaat ttaccaaaaa gtttagtaaa acaatttcaa
     4381 aagcgtataa atagcaatgg ttatttagaa tttgaagtga ttttgcgcag tacttttgct
     4441 aaagatgtaa tttataaagt agattggtta gataaagatg gttttgtgct aagagatgtt
     4501 ttaaatgagg actatcaagc ccttagaatt ccagcaggac aagaggtaat tcttcgtaaa
     4561 cttgcatctg atacaagagc gaatgatttt agattagaaa ttaaagcaaa aaattaatct
     4621 cattttagga aggataaatc atgaaaaaaa caaaaatttt aggaacagct cttattggag
     4681 ctttgctttt tagtggttgt gcgcaaacag cttatacaga tggaaaggca agtcaggtaa
     4741 aaaaaggcga tgctttaacc ttgggtcttg atagacaaga ttttgaaagt gcagctgaaa
     4801 ctatgataaa tagtatgtta agcgatcctg cttttgcaaa tattaaacca ggtacaagaa
     4861 aggttattgc tattggtagg gttgtgaatg ataccccgca aagaatcgat actgaaaaac
     4921 tcaccgcaaa aatcacttct gcattaagaa aatcaggtaa atttgttcta acttcagcag
     4981 ttgctgcagg cggagcactt gatagcatga gtgaagatgt aagagaatta agagataatg
     5041 atgagtttaa tcaaaaaacc atagcaaaaa aagggacatt ggtatcgcct gatttttctc
     5101 ttgcgggtaa aattagacaa gataatgtaa aacttagcaa tggtaaaact caagtagaat
     5161 actttttctt actaagactt actgatttaa catcaggttt agtttattgg gaagatgaac
     5221 aaactattga taaaaccggt tctagtaaat cagttacttg gtaaaataaa aattaattta
     5281 tgaataaaat tttttagctc aagtgtttag cttgggcttt ttttatgatt tttaaaagga
     5341 tacgaaatga aaaaatatta tttatcggct ctttagttat ggcaagttta ctttatgcac
     5401 aaggttccca gcctgtagaa attacacaac aagatataaa tactcaaaat gaaatgtctg
     5461 acgcaagtac taaggatatt accccaaaat caattgaaga tttttttgaa gaatttgcgg
     5521 ataatttcgg tatagaatat ggtataacca aagatggaaa aactttttat acaggaaaaa
     5581 gtactgttgc tgtaaatgat actgatccac aatttgcaca agctttacaa aatgcttacc
     5641 aaaaagcaat gttaaatttg caaagcgaat ttataagaga tgcttttgga agaattgcta
     5701 caagcaagat tcaaaattat gaagcagata attctacgaa tgctaaggaa tttgatgaat
     5761 tgccaaaagg tgataaggtt gatcaaattt taaataaact tacacaatta gctggtgctc
     5821 agcttgataa ggcattaaaa gatttaggta tagatacaaa ttctttaagc gaagacagaa
     5881 aaaagacttt attaaagcaa gaatttctta ataaaactat gacaaatgcc ataggttcta
     5941 tgagtggact tgttcctgtg caaactatag ttacacaaag aagaggtgag tatgatgtag
     6001 gtgttgttgc tgttatttcc aataaaactc gccaattagc aaaagatatg gcactagcaa
     6061 gacagagtgc tattaagggt aaaggcaagg caataagtga gtatctgcca aaagatacaa
     6121 aaggcttttt aaatgaatat ggaattcgct tagtttatga tgaaaatggt gcacctatta
     6181 ttttaagtta tggaaactgg ggttatgtag cagatcctag caatgctaaa aaaacaaata
     6241 ttttagaaga tagagccaaa gaaacagcac ttactatggc tgatgctgct attatagagt
     6301 ttattaatac aaatttaagt cttaaagatg aaagaacaac tggtgatact tacgaggaaa
     6361 tcatcaaaca aagtattaat gttaatgata gttccactca agaacaaact caaaacataa
     6421 caaatattat tgacaaagta aatagtaaaa taaaagcaag cgcaagcggt aaaattcgtg
     6481 gtattcgtac tcttaaaaaa tggagctata caagtgaaaa tggtattgaa catgtaggag
     6541 ctgtgagatt ttattcttat gaaaatttag ctaacacaaa tgaggcttta aattcaaagt
     6601 caaatgcaac aaaaaatgaa gctaaaaaat cttctagcat acaaagaagt tctaatgttg
     6661 taaatagcat ggatgatttt taaaggtaaa agatgaaaat aattaaaatt ctttttttag
     6721 gcttattttt aagcctaagt cttaatgcta aagttataac cacaacttca acaaaatcaa
     6781 gcacaggtga aggcacaggc ttgactaggg aagatgcgat aaacaatgcc attatagaag
     6841 ctataggaaa aatgagtgga gtaagcatca attctcttaa gaaatctaac actagcgttt
     6901 caactgataa ttcaggttca aatatacaag ataattacag cgagcaaatt tcaaaagcca
     6961 ccaaaggtag agctgatact tatgaaatca atagtgttga acaagatgca aatggtaaat
     7021 atacagccaa tgtaacgatt tttaaaacca caacaacaaa aaagtatcaa gctccaggtt
     7081 taagtgcaga taatagaaga agtattactg tttttgattc tactccagat gctgcaaaaa
     7141 gaggtatagg ctcagctttg caacaaaaaa tcatttctga tttattgcaa agtcgtaaat
     7201 ttaatgtttt agaccgtgat tctagtggct attatgaaat ggaaaaagct ttaatcaaaa
     7261 gtggcgacgc agctagcgat gaagtttata aacttaaaaa tatgttagca acagattata
     7321 ttttattgtt ttctatttca ggacttgaag gtaaacaaaa aacaagcaat ttaacaggaa
     7381 aaagcaaaac tgaaattgaa gttatcgtag attatcgtgt gcttttattt gctacaagac
     7441 aaattaaatt ttctaatact ttaagcatga aagtcaatct taaagacaat agtcttagtg
     7501 ccaatgaaac cgcactcaaa caaattgcaa atcgtatagc aggagatatt ttaaacgcaa
     7561 tttatccttt gaaagttgca agtgttgaaa acaatgaagt aatattttct caaagcttaa
     7621 atcaaggtga tgtttatgaa tgttttgctc ttgggaaggt tataaaagat acttatacaa
     7681 aagaaaatac aggaagagta gaaagcaaaa caggaagtat tgaaatcact cgcacaagcc
     7741 ctaaattttc ttatgcaaaa atcacagaag gtagtgtaaa agtgggcgat atttgcagac
     7801 ctttaagtaa tactggtagt ggaaatggct acactatagg tcgtgatgca aattatcaaa
     7861 cccaagaagg cggcggagta aatctaggct tttaaatttt tagagtttga tttttctcaa
     7921 actctaaact ctttcttaaa ttcatcaaaa attaaagaaa aattttgtaa aatcgaaatt
     7981 ttattaaacc actaaagctt ttaaatccgt tattacggtg ctttatggta ctaccaattt
     8041 ataaggaaaa gcaatgtatg ctattatcaa acacagcgga aagcaataca aagtaagtgt
     8101 tggcgatgag ctaaaactag atcactttga agctgaaagc aaagcaagta ttgaagtaag
     8161 cgaagttctt gctatcaatg ataaagaatt aaaggtaggt gcgcctttcg tagcaggtgc
     8221 aaaagttgtt ttggaagtga tcaatcacgg aaaagataaa aaagttgtga tttacaaaaa
     8281 aagacgcaga aaagattcta aactcaaacg cggttttaga agacaattta ctcgcgttgt
     8341 agtaaaagat atcaaagctt aaggagtaaa gaatggcaca caagaaaggt caaggttcaa
     8401 ctcaaaataa ccgcgattcc ataggtcgtc gtttaggtgt taaaaaattt ggtggcgagt
     8461 ttgttagagc tggaaatatc atcatccgcc aaagaggaac tgcaactcat gcaggtaaca
     8521 atgtaggcat gggaaaagat catactatct ttgctctaat tgatggtttt gtaaaattcg
     8581 aaagaaaaga caaagataga aaaaaagttt ctgtatatcc tgcataagtt tttaggacgc
     8641 tttttagcgt cttgaaaact ttaaatttat aaatttaact tcttttattt actcaaattt
     8701 agctttataa atttaaagtc aaaggcaatt taaatgttta ttgatagtgt taaaattact
     8761 ttagcttcag gcgatggtgg caaaggtgct gtaagttttc gccgtgaaaa acatgttcca
     8821 cttggtggcc ctgatggagg agatggtgga aatggtggtg atattatttt cgtatgtgat
     8881 aataataccc acactcttgt aaatttcaaa ggcaaaagag aattacgcgc gcaaaatggt
     8941 gctggtggaa tgggacgcaa taaaaatggc aaaaagggtg aaaatttaga acttatagtg
     9001 cccgaaggaa cgcaagttat cgatgcacaa accaatgaaa ttttacttga tcttaccaaa
     9061 gaaggacaaa gagagctttt tttaaaaggt ggaaaaggtg gacttggcaa cacccatttt
     9121 aaacacgcca ccaatcaacg ccccgattac gcacaacctg gtataaaagg agaaagtcgc
     9181 ttagtcagac ttgaacttaa acttattgcc gatgtagggc ttgtgggctt tccaaatgtg
     9241 ggaaaatcta ctcttataag cgttgtttca aatgcaaaac ctgaaattgc aaattatgaa
     9301 tttaccaccc ttactccaaa acttggactt gtagatgtaa atgagtataa ttcctttgtt
     9361 atggctgata ttccagggat tatcgaagga gcaagtgggg gtaaaggctt aggacttgcc
     9421 tttttaaagc acatagaaag aacgagcttt ttacttttcg tgctagatcc tatgaggcaa
     9481 atgcctttaa aagaacaatt tatagtacta agaaaagaac ttgaaaaatt ttccaatgaa
     9541 ctttttgggc gtaaatttgg catcatgatt tcaaaaagtg atagtgttcg tttaggagag
     9601 gaatttgctg agcaaattgc tttaaacatt aatgagttag acaattatct caaagaaata
     9661 aataatccac aaagcttttt aatcaaagtc tcaagccttg aaaaaacagg acttaaagaa
     9721 cttaaattca tgcttttaga agaaattaaa actttaagaa ataacaaaaa aaatttaaca
     9781 atctaggaag tgttttatat taaaaatttc aaacactccc tattttttca aaaataacta
     9841 gtttatatga aattttggct aaaattataa aaatttttca aggaataagc atgaaaagaa
     9901 tagttgttaa agtgggttct catgtgatta gcgaagaaaa cactttaagt tttgagcgtc
     9961 ttaaaaattt agtcgcattt ttagctaaac tcatggaaaa atatgaagta attttagtaa
    10021 cctcggcggc tatttcggca ggacacacca aactagatat cgatagaaaa aaccttatta
    10081 ataaacaagt tttagctgct attggacaac cttttttaat cagtgtttat aacgagcttt
    10141 tagccaaatt taacaaacta ggcggacaaa ttttacttac aggcaaggat tttgactcta
    10201 gaaaagctac taaacacgca aaaaatgcta tcgatatgat gataaattta ggaattttgc
    10261 ctattatcaa tgaaaatgac gctacagcta tagaagaaat tgtctttggt gataatgata
    10321 gtttaagtgc ttatgctacg catttttttg atgcggattt gcttgtgatt ttaagcgata
    10381 ttgatggatt ttacgataaa aatcctagtg aatttagtga tgcaaagcgt ttagaaaaaa
    10441 tcactcatat taaagaagaa tggctacaag caaccataaa aacaggtagt gagcacggaa
    10501 caggtggtat agtaaccaaa cttaaggcag ctaaattttt acttgaacac aataaaaaaa
    10561 tgtttttagc aagtggcttt gatttaagtg tggcaaagac atttttatta gaagataaac
    10621 aaataggtgg aactttgttt gagtgattaa tttattaaat tctcttttaa aatcaaataa
    10681 gctataatta aaacttttaa tttcacacaa agcgaaaaaa tgaaaaaaat tatttttatg
    10741 ggcactccat cttacgcaac ttgtatttta aaagcactag tagaaaatga aaattttaaa
    10801 ctcgtagcac tttttactca gcctgataaa gccgtaggta gaaagcaaat tttaactcca
    10861 agtgatacta aggctttttt aagtcaaaat tatcctagta ttcctatttt tactccaagt
    10921 tctttaaaag ataaaaatat tataagagag attaaggatt taaatcctga ttttatcgtg
    10981 gttgctgcct atggaaaaat tttacctaaa gccattttgg atttagcgcc ttgtgtgaat
    11041 ttgcacgctt ctttacttcc aaaataccgt ggtgccagtc cgatccaaag tgcgatttta
    11101 aacaaagatg aaaaaagtgg agtttgcacc atgctcatgg aagaagggct tgacacaggt
    11161 gctatacttg aaagcttaga atgtgatata aaagataaaa attcaagtga agtttttgaa
    11221 cttttagcaa atttggccgc taagatcatc ctctctactc ttttaaattt cgataaaatc
    11281 acccctaaaa aacaagagga aagtctagca acactttgta gaaaaatcaa aaaagaagat
    11341 gggcttataa atttgcaaaa tgcaagagaa ctttatcaaa aatatctagc tttcacccct
    11401 tggcctggag ttttcttgga aaatggactt aaattcttag aacttgaact tgtggatgaa
    11461 ttaaaacaaa atgctaagat gggtgaaatt ttagaattag aaaaagaaag ttttttgctt
    11521 gcttgcaaac aaggagtttt gcgtattaaa aaacttcaag aaagtggaaa aaaagctctt
    11581 gatggtagga cttatttaaa tggaaaaagg cttaaaagtg aagatagttt gtgttgaaag
    11641 tatagactca actcatcttt ttttatgcaa gcaaatacgc aatggaaaga ttgatgaaaa
    11701 ttttgctatt tatgctttag aacaaataaa tggagttgga agtagggaaa attcttggca
    11761 gagctctaaa ggaaatttac atctttcttt ctgtattaaa gaagaagact tgccaaaaga
    11821 tttaccttta gcttctgtga gtatttattt tgcttattta cttaaagaag ttttacaaga
    11881 aaaaggttct aaaatttggc ttaaatggcc taacgatcta tatttagatg ataaaaaagc
    11941 tggaggggtt ataagtgcta aaatttcaaa ttttatcata ggcggtatgg gtttaaatct
    12001 gaaatttgca ccccaaaata cagctttatg cgatatagaa atttcgctta aagatttagt
    12061 gagtgagttt ttgcaaaaag tagaaaaaaa aattttatgg aagaatattt ttagcaagta
    12121 tatgttagaa ttcgaaaaat caagaaaatt tagcgtccat catgaaggta aagttttttc
    12181 acttgaaaat tcttttttgt atgaagatgg ttcaatttta ctaggcgata aaagggtgta
    12241 tagtttaaga tgagcgaaat tattacaata gcaaatcaaa aaggtggagt aggaaagact
    12301 acaacagcag taaatttagc cgcttctttg gctgtggctg aaaaaaaagt acttttgatt
    12361 gatgttgatc cgcaagctaa tgcgactaca ggacttggtt ttaatcgtaa taattatgag
    12421 tataatattt accatgtttt tataggaaga aaaaagcttt cagatattat tttaaaaaca
    12481 gaattgccac aacttcattt agctccttca aatataggtc ttgtaggtat agaacaagag
    12541 cttgctaaag gtgaaaataa tgagaaaaaa atgctgctta aaaatcaaat tcaagaagtg
    12601 attgatgagt atgattttat tattattgat tctccgcctg ctcttggaag tattactata
    12661 aatgcttttg cagcaagtga tagtgtaatt atccctatac agtgtgaatt ttatgcgctc
    12721 gagggtgtag ctatggtttt aaatacaatt aaaattatca aaaaaactat taattctaaa
    12781 ctcagggttc gtggattttt accgacaatg tatagctctc aaaataatct ttctaaagat
    12841 gttgtagatg atttgaaaca aaattttaaa aaacaacttt ttactattaa tggaaacgaa
    12901 gatgacttta ttgtgatccc tcgcaatgta aaacttgcag aaagtccaag ttttggaaag
    12961 cctataattc tttatgatat taaatcacca ggttctgttg cttatcaaaa tttggcgtat
    13021 tctatattag gataattata atggggttaa ataaagatag gggtttaagt agtttaatca
    13081 gtgatatgga tactgtttat agtaaagaat tgggttttga taaaaatcaa agcactatga
    13141 tagaaattga tcaaatttca cccaatccat ttcagccaag aaagaatttt gatcaagaag
    13201 ctttagatga acttgctaat tctatcaaag aatttggact tattcagcct attattgtat
    13261 ttaaaaaaaa taataaattt attttaattg ctggggaacg tcgcttaaga gcagtgaaag
    13321 cattaggaaa aaaagaaatt ctagctttta ttgctgatat tgatgagaat aagcttagag
    13381 aattggctct tattgaaaat atacaaagag agaatttaaa ccctattgag cttgctaatt
    13441 cttataagga tttaatgcaa gttcataaaa ttactcaaga gaatttagca gaacttattc
    13501 ataagtctcg tactcaaata acaaatactt taagacttct gaatttagat attagaactc
    13561 aagagttgat tgcttctgga aaaatttctc agggtcatgc taaagttttg gttggtttag
    13621 atcaaaaaga tgaaaaaatg ttggttgata gcataatagg tcaaaaactt aatgttagag
    13681 atactgaaaa aatagttaaa aaaataaaaa ataatgaaag cttacctaat caagaatttg
    13741 aagatgaaat aaaaaaatta aaacaaatac taaatcgctt tggatttgac tgcaaaaata
    13801 aaaataatga ttttgtaatt catttagaaa atattgataa aattaaaaaa ttaatcaaaa
    13861 tgcttgaaaa gctttaacca aaatcttagc ttttttatgg taaaatagtc cttcaaaaat
    13921 tctaaccaag gagaattatg tttgaagata tgcatccttc cataatgctt gctactatgg
    13981 ctattttttt agctatgata gttattttaa atagtatgct gtataagccg cttttaaaat
    14041 ttatggatga aagaaatgat tctataaaaa atgatgagaa taaagtaaaa gaaaattctc
    14101 aagaagtttt aggtgtgaat gatgaattag aagctattca tattaacact agagaagaaa
    14161 ttcaaaaaat taaacaaagt gctatagctg ctgctaaaga agaggcagag caaattctta
    14221 gaagcaagaa agaagaatta gaaagaaaaa tggccagttt ttatgcagat ttagccgttc
    14281 aaaaaaaaga gttgcaagaa catttaaaca tacatttatc tgagcttaag caagctttgc
    14341 aaaataacat aaagaaaatt taagaggaga gaaatgagta agttattctt tattatattt
    14401 ttgctacctt tgtatgcttt tggtgcatca aacggtagtg gagaatatga tattattcca
    14461 aggactatta attttctaat ttttgtagct atattgtatt attttgttgc aactccattt
    14521 aaaaattttt acaaaaaccg tattgtaaaa atttcttcta aacttgatga aattcaaaaa
    14581 aaacttttag aaagtaaagc taagaaatta gacacgatga aaaaacttga agaagctaag
    14641 gcaagtgctg ctgccgcttt aattacagca aaaaaagaag ctgaaatttt agttcaaaat
    14701 attaagaaag agactcaaga tgagttagat ttacttcaaa aacattttga ggaacaaaaa
    14761 gattatgaat ttagaaaaat ggaaaaagaa ttagtatcaa atactttaaa tgaaattttt
    14821 tctgatccaa atatgacatt aaaacagagt gaaataatag aacttatgat gaagaaggta
    14881 tcttaaatat ggaaaatata attgcaagaa gatatgcaaa agcgatagct tcaagagctg
    14941 atataaatga tttttatcag aatttgtgta ttttaaattc tgcttttgtt ttgccaaaat
    15001 ttaaaaatat tatagaatct aatgagatta aaaaagaaag aaaaatggaa tttcttgatt
    15061 ctttttttga tattaaaaat tctagttttc aaaatttttt aagacttttg
//
LOCUS       DAPIWQ010000029        15046 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.029, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000029 DAPIWQ010000000
VERSION     DAPIWQ010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15046)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15046)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15046
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.029"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(142..1338)
                     /locus_tag="RJ267_000631"
     CDS             complement(142..1338)
                     /locus_tag="RJ267_000631"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HDV7388508.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     NPHELGVDIKTQVTIDYGTKANFENCKPQSIHTIVVSAPCVESMKIEDLRSLVMKLIL
                     DSNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVN
                     DDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALE
                     QFKKLL"
     gene            1479..2702
                     /gene="sstT"
                     /locus_tag="RJ267_000632"
     CDS             1479..2702
                     /gene="sstT"
                     /locus_tag="RJ267_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HDV7388509.1"
                     /translation="MFSKIIQSYAKGNLIVQICIGIALGILIGISSKEISEIANLLGI
                     LFTSALKAIAPMLVFILILTSICTKDFSQSGAKIKNIIILYIVGTFFASACAVLANFF
                     FPVKLVLDGVQTATNSSPTHMSDIFKDLLFKIVDNPINALSSGNYLGILTWAIAGGIA
                     LKHCSNEAKQVFIDINEGVLKIVKFVVKLAPFGIFGLVANSVAQTGAQGLLSYVKLLI
                     LLVATMLFVTFVINALIVFFYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGIDKEFYGISIPLGATINMAGAAVTIAILSLTAANTVGIEISLLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVIQDSVETALNSSTDVL
                     FTAICSKNELNYNIK"
     gene            2712..3599
                     /locus_tag="RJ267_000633"
     CDS             2712..3599
                     /locus_tag="RJ267_000633"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HDV7388510.1"
                     /translation="MRHLITTKDFNKVEIMELFKEASDFLDEKPRTFLEGKSITTIFF
                     ENSTRTLSSFESAARRLGARVLRLDVSRSSSSKGETLYDTAANLDAMSPNAIVVRHAN
                     SGVPLILAKHMHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGNVEGKKICIVGDIKNS
                     RVAASNIELLSRFNLDITLVAPPHFMPNTHLKKHYKLDENIIANSDIIMSLRTQTERH
                     NKTVYASLKDYANDFCIQKSLVKDKKLILLHPGPVNRNIDISDEMMSNERTLVLKQVK
                     NGVAIRMAVLKKLILENEG"
     gene            3603..5324
                     /locus_tag="RJ267_000634"
     CDS             3603..5324
                     /locus_tag="RJ267_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HDV7388511.1"
                     /translation="MLEWDLSALFHDKEALQNFTQDQIQQSLNFKKNYENKLYTLNAN
                     EFLQALKDYENLNQALGKMMTYAYLLFAKNTQNGSFYAQYEEECKKIEENLLFFELEF
                     CELAPEKSREFTTFCKDYDFYLSNLLQNKRYNLSKNEERIMLYLSNTGANAFSRLFDE
                     SMSALKIPFEGKKLSEEEILSKMYDENRKIRKKAAKKFSKVLQKNSRLLSFIINMIKT
                     ERKNISLLRGYENAEISRHISNQISQKSVDSLIASAQKHFNLVSQFYKRKKQILGYDE
                     LKDYDRYAPIGKEASFDFKTSKNIVLEAFQAFSPQFYDIAKNAFDQGWIDVYPQENKQ
                     GGAFSHSATSDAHPFVLLNYTNKRRDLFTLAHELGHTIHQKLSYNVSYLNQNTPLTTA
                     ETASVFAEMLVFDFIKDKLKKEELLSLYANKIEDIFATFYRQINFTCFERRLHAQENE
                     LSTEEINKIWMEESQKMFQDSVKLTKNYASWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSKKCENFKELYIKMLSLGGSVSPKELVGMFGFDIEDENFWEIGIKEIQKLINE
                     FMELQSC"
     gene            5318..5755
                     /locus_tag="RJ267_000635"
     CDS             5318..5755
                     /locus_tag="RJ267_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388512.1"
                     /translation="MLETILKNENFIHTMQKHCYEVISHLIEENIEFSIVANTNFIDF
                     NPELPKELDIKQNPYALFALGGYTFESIQLNKDFIQFHAGFGNDDFDSFVKVDLGAIT
                     QIQVENSILFVNFSLYKREDSKNLQKSKNIFLNNPKNKDIFKK"
     gene            5752..7827
                     /locus_tag="RJ267_000636"
     CDS             5752..7827
                     /locus_tag="RJ267_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HDV7388513.1"
                     /translation="MNLFEDLNDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLI
                     GEVGIPSHNTLTLTFTNKAASVMRHRALNFLQGNHNPLLCTFHKFGLLFLKLHFERLE
                     RKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIQYISYCKNEGKRVSNVFEDLNLLKE
                     HNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNY
                     ITVDEYQDTNTLQYKILKNLCCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNV
                     KLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLICTKDTGENIKILKNENEKDEGLY
                     IAQEVKKLLNSGVEAKEIAILFRVNALSRAIEEAFMKKQISYKLLSGMRFYERLEIKD
                     LISYLRLILNPSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGV
                     GILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGDERIRNL
                     DEFYANLREKLKEDPKASLEDLLSEISLLSDQDNLDEECVCLMSIHASKGLEFDYVFI
                     IGFDEGFFPLNSEENLEEERRLAYVGITRAKKFLTISVANSRFYHGSRANINPSRFLE
                     ESKLINEKSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNINFGGIMRVI
                     MASFVEKAV"
     gene            7824..8642
                     /gene="truB"
                     /locus_tag="RJ267_000637"
     CDS             7824..8642
                     /gene="truB"
                     /locus_tag="RJ267_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HDV7388514.1"
                     /translation="MNKIFAAFKPKGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLSLDDQNIKEIQNIKEFDLANLKQII
                     DQMQGIISYTPPQFSAKRINGTRAYELAKKGIEANLKPCQMEVFDCKILSYNHPFLNI
                     EITVSEGAYIRSYCELFARKLGINATLSSLERIKEGKFVYNNEKSLNVLKYINLKPNF
                     IKDLNKLENGAKIFVEELEFHDEGDYYIETEKYFSIINIKENTVKYLLNKVEKC"
     gene            8636..8863
                     /gene="csrA"
                     /locus_tag="RJ267_000638"
     CDS             8636..8863
                     /gene="csrA"
                     /locus_tag="RJ267_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HDV7388515.1"
                     /translation="MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILR
                     KELVQQVKDENLHSVVQNDIKLDDLSKKLIK"
     gene            8860..9627
                     /locus_tag="RJ267_000639"
     CDS             8860..9627
                     /locus_tag="RJ267_000639"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HDV7388516.1"
                     /translation="MKAYAKANIFLKLTGFDSRKYHLLESRFILLKDVFDELELIDKE
                     SDSKKEFEIISNFKCENNIIQKAYLLLSRRYNNELKELFSKKSLKLTKNIPVCAGLGG
                     GSSDCASFLLLINETLNLKLNLQELINLSIQLGSDIAFFLSGFHSANVSSCGEIIEEF
                     EDDIPNLKWTFPQISCQTKAVYDEFDRGIFDFQKNNNQAQIYKKLSTKELLQNFKNKE
                     LNDLFTPCATLYPKMKSYLQEDFFLSGSGSSVFKVDR"
     gene            9624..10076
                     /gene="smpB"
                     /locus_tag="RJ267_000640"
     CDS             9624..10076
                     /gene="smpB"
                     /locus_tag="RJ267_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HDV7388517.1"
                     /translation="MKIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDS
                     FVRIIKNEIFLLNSHISLLHTTHSFYKHKERGARKLLMHRKQIDKLLGKVSIEGYTIV
                     ALDLYFNTKNKVKATLALAKGKNLHDKRETLKKKQADLEARAAMKNYK"
     gene            10087..10689
                     /locus_tag="RJ267_000641"
     CDS             10087..10689
                     /locus_tag="RJ267_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HDV7388518.1"
                     /translation="MKKISALFLISLAFFLNACSKEEEIQNDFMFEEYHKGDKIVLNS
                     VNGGSKTLIRTDKGFVVEGEEGKVLMFDFFGTFCTPCKEEALDLSKLWKNNSSKFIII
                     GLTHFEDVSDETVKKFAGDYGAYYFLSNGSSNDRIIAQILKDIDYQNMEQLPFKVVLK
                     NGIYQKISDYWNNNTPTNFYLGKIPTELMQEDLNKIYKGK"
     gene            10689..10979
                     /locus_tag="RJ267_000642"
     CDS             10689..10979
                     /locus_tag="RJ267_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HDV7388519.1"
                     /translation="MPKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQN
                     LEKASQTMLEIHHNGSGICGIYTQEIALSKQKKVMDAAKLANFPLQAKVEEE"
     gene            10976..13105
                     /locus_tag="RJ267_000643"
     CDS             10976..13105
                     /locus_tag="RJ267_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7388520.1"
                     /translation="MKYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSTDFKD
                     IFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISVVLDEILLSSKNKNNEIKIID
                     FLEKLIQDSRSYSSYLLKKHNINLNKIQELQNHENIQNLNNHTSDLTLLAQNGKIDPL
                     IGRKFELERMMQILSRRKKNNPILVGEAGVGKTAIVEGLALAIAEKKVPKNLQNAKIF
                     SLDMASILAGTKYRGDFEKRIKEILSELEKIPNAILFIDEIHTIVGAGSTGESHTDFS
                     NLLKPALSNGTLKCIGATTFMEYKNTFDKNKPLSRRFAKINVDEPSQEESLQILKGLK
                     NKYEEFHHIKLNDEILQYAVIWGKKFFNDKFLPDSAIDLIDELGASFALNPRAKKNAN
                     LKDLENVLAKMTHHHKMFEFDQNKALMNLKTNLKAKIFGQDEVIDSLVSSLKQSFAGF
                     KNSNTPRGVFLFTGSSGVGKTELCKALAEFLGLNLERFDMSEYAEKHAISKLIGSPAG
                     YIGFEEGGLLSNAIRKNPFSLVLFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKVDFK
                     NTIIIMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKILHFNDLNDAIL
                     VKIIEKELDEISKNLNNIKLSVDDKAKIYLAKKAYNKEFGVRLLKRIISEEIGEKISD
                     EILFGKLKKGGIAKIKLGKNEKLEFIF"
     gene            13080..13727
                     /locus_tag="RJ267_000644"
     CDS             13080..13727
                     /locus_tag="RJ267_000644"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HDV7388521.1"
                     /translation="MKSSNLYSKLLNAPKNAPVFLSQNLEADFIVKAYTFGLFPWTSK
                     PVTWWCPDPRCILIPNQIHIQKNMKKFINLYQIKLDYDFLKLITLCRDTRSQSWIDDE
                     FITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVFFGESMVSIKKNASKVAMIKL
                     CDLLKPYDFIIDCQVYNQHLEFMGAHNISRKEFLNILKEKCNQESGFKNFKDLIT"
     gene            complement(13749..15038)
                     /gene="cetZ"
                     /locus_tag="RJ267_000645"
     CDS             complement(13749..15038)
                     /gene="cetZ"
                     /locus_tag="RJ267_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetZ"
                     /protein_id="HDV7388522.1"
                     /translation="MFGAKKNNTKIIEQLEKKCNGLGDILRSIGNTMAVIEFTTDGVI
                     LEANQNFLTTMKYSLSEIKGKHHSMFCLPEVVNSSAYSDFWKDLRDGKARSGLFRRIA
                     KGGIDVYLEANYLPISDNNGHVYKIIKFANDITQRHYEMLDLRNTIAAANRSMAIIEF
                     KPDGTIITANENFLRTMDFNIDEIKGKHHSMFCDSNYRHSKDYVQFWEDLREGKFQSG
                     KYIRYGRNNKKVYLEASYNPVKNDDGKIYKVIKFATDISEQVKKDQEKLCLISELAEK
                     NDNLTQDGDRVIENTVSNVQNIADMMSQSSNLVSSLNQQSDEIKSIIQTISDIADQTN
                     LLALNAAIEAARAGEHGRGFAVVADEVRNLAERTGHSVNEITTTINSIRNVTSQVVES
                     IKSGLEDVNQSVELAKEARECMEKIRESSAEVAKAMS"
BASE COUNT         5610 a         2255 c         2258 g         4923 t
ORIGIN      
        1 aattaattta gcttccttcc taacttttat atttatgagg gatattgaaa aatatccctc
       61 taagtcaaaa attaatataa ctttattaat tctttataat tatacaagcc ttgtttaagc
      121 ttgtataata ttgttaattt tttaaagtag ctttttaaac tgttctagag catcaagttt
      181 ttcccaagga tagtcctttt gtcctacttg cccacgagct gctacatccg cataaagaaa
      241 agtttcttta cttggtttat ccagatgaaa tttatcacgg atccaatttg gcgttaaaga
      301 gaaattttgc attacaaaat cacttaaaac atcgtcattt acactggtat ttgtgcccat
      361 acaatccacg cttaccgaag taggttttgc aacacctata gcataactaa gttgaactat
      421 acatttttta gcaagccctg ctgcaactat gtttttagct aaccatctac ctgcataaag
      481 tccacttcta tcaactttag tataatcttt gctcgattgt gcgccaccac ctattggaga
      541 ataacctcca aaactatcta ctataagttt tcttcctgtt aaaccactat catgtaaaga
      601 agaatgatta acatatttac cagttggatt gattaaaatt ctagtcttat taggatcaaa
      661 aagttctttt ggtaaattac tatctaagat aagtttcatc actaaagatc ttaaatcttc
      721 tattttcata ctttcaacac aaggtgcaga aactactata gtatgaatac tttgcggttt
      781 acaattttca aaattcgcct tagtgccata atctatagtc acttgagttt taatatccac
      841 tccaagttca tgtggatttg cttttgcata agcataaact ctatcacata gcattcttgc
      901 ataactaata gctgctggca tatattcctc agcttcacaa cttgcaaaac caaacataat
      961 gccttgatca cctgctcctg tttcgccatc ttcttgatcg acaccttggt tgatatcagg
     1021 gctttgttca tttaaaaaca ccataacatc aacctcatca ggatgtaaac actgctcttt
     1081 gctaaaatgg cctgctccgt cataaccaat gttttttaaa acatctttaa ctaaattatc
     1141 gtaatcagct ttactaagtt tgtgatttga cttaacttcg cctcctatca caaccttatt
     1201 tcctgcgaca aaaacctcac tcgccaccct tgaatttttg tcatttttca agagtatatc
     1261 cactatcgta tcagcgatta tatcagcgca cttgtctgga tgacctgcac ttacgacttc
     1321 tgaagtgaat agatacataa aaagtccttt catttaaaat gaaccacaat tgtatccaaa
     1381 taaacttatc aaagcttgat aaattaaaaa ttctctaaaa ttaagcaaaa gttagttaaa
     1441 atcaactttt gatataaaaa atatttaata aggtttttat gttttctaaa atcattcaaa
     1501 gctacgctaa aggcaacctc atagttcaaa tttgcatagg tatagcacta ggaatactta
     1561 taggcattag ctctaaagaa atatctgaaa ttgcaaattt acttggaata ctttttacaa
     1621 gtgccttaaa agctatcgct cctatgcttg tttttatttt aattttaacc tcaatttgca
     1681 ctaaagattt ttctcaaagt ggtgctaaga tcaaaaatat tatcatttta tatatagtag
     1741 gcaccttttt tgcttcagct tgtgcagttc ttgctaattt tttcttccct gtaaagcttg
     1801 ttttagatgg agttcaaact gctacaaact catctccaac ccacatgagt gatattttca
     1861 aagatctttt atttaaaatt gtcgataatc ccataaatgc tctttcaagc ggaaattatt
     1921 taggaatttt aacttgggca atagctggag gtatagcatt aaaacactgt tctaacgaag
     1981 caaaacaagt ttttatagat atcaatgaag gggttttaaa aatcgttaaa tttgtagtaa
     2041 aacttgcccc ttttggaatt tttggacttg tggctaattc tgtagcacaa acaggagcac
     2101 aaggtttgct aagctatgta aaacttttaa ttttacttgt agctactatg ctttttgtta
     2161 cttttgttat caatgcctta atagtctttt tttatacaag aaaaaatcct tttcctttaa
     2221 tttttatctg cttaaggcac agtgcatttt ttgccttttt tacaagaagt tcagcggcaa
     2281 atattcctgt aaatatggca ctttgcgcta aacttggcat agataaagaa ttttatggca
     2341 tttctatacc tttaggagct actatcaaca tggcaggagc agcagttact atagctattt
     2401 taagtcttac tgcagccaat accgttggta tagaaatcag tcttttacaa gcctttttat
     2461 taagcattat tgccaccttt gcagcttgtg gggctagcgg agttgcgggc ggatctttac
     2521 tgcttatacc tttggcttgt tctttattta atatagacta tgatattgct atgaaggtag
     2581 ttgccatagg ttttattata ggggttattc aagatagtgt tgaaactgct ttaaatagtt
     2641 ctacagatgt tctttttaca gcaatttgtt ctaaaaatga attaaattac aatatcaaat
     2701 aaggtaaaaa catgcgtcat ctcatcacta caaaggattt taataaagtc gaaattatgg
     2761 agctttttaa agaagcaagt gatttcttag atgaaaaacc taggactttt cttgaaggaa
     2821 aaagcatcac gacaattttt tttgaaaact ctacacgcac cctttcatct tttgaaagcg
     2881 ctgcaagaag attaggtgct agggttttac gccttgatgt ttcaagatca agctctagca
     2941 aaggagaaac tctttatgat actgctgcta atttagatgc catgagtcct aatgctattg
     3001 ttgtaagaca cgcaaactca ggagttcctt tgatattagc aaagcatatg cattgtccag
     3061 ttgttaatgg aggagatgga aaacacgccc atcctaccca agctttactc gatttgttta
     3121 cgatttataa tcattttcaa ggtaatgttg aaggtaagaa aatttgcatc gtaggtgata
     3181 tcaaaaattc ccgcgttgca gcgtccaata tagagctttt aagtagattt aatcttgata
     3241 ttaccctagt agctccacca cattttatgc ctaataccca tcttaaaaaa cattataagc
     3301 ttgatgagaa tatcatagca aattcagata ttatcatgag tcttagaaca caaacagaaa
     3361 gacataataa aaccgtttat gcttcactta aagactatgc aaatgatttt tgcattcaaa
     3421 aaagcttagt aaaggataaa aagcttattt tactacatcc aggccctgta aatcgcaata
     3481 ttgacataag cgatgaaatg atgagcaatg aaaggacttt agttttaaaa caagttaaaa
     3541 atggagtggc tattagaatg gctgttctta aaaaactcat actagaaaat gaaggataaa
     3601 aaatgttaga atgggattta agtgctttat ttcacgataa agaagcattg caaaatttta
     3661 cacaagacca aatccaacaa agtttaaatt ttaaaaaaaa ctatgaaaat aaactttata
     3721 cattaaatgc taatgagttt ttacaagctt taaaagatta tgaaaattta aatcaagccc
     3781 ttggcaaaat gatgacttat gcttatttgc tttttgctaa aaacactcaa aatggttctt
     3841 tttatgcaca atacgaagaa gaatgcaaaa aaatagaaga aaatttactc tttttcgagc
     3901 ttgaattttg cgagttagct cctgagaaaa gtcgagaatt tacaactttt tgcaaagatt
     3961 atgattttta tctttctaat ttattgcaaa acaaacgcta taatcttagc aaaaacgaag
     4021 aacgcattat gctttatctt tccaatacag gtgcaaatgc ttttagtaga ctttttgatg
     4081 aaagtatgag tgctttaaaa atcccttttg aaggtaaaaa acttagcgaa gaagaaattc
     4141 taagcaaaat gtatgatgaa aatagaaaga tacgcaaaaa agctgctaaa aaattcagta
     4201 aagtcttaca aaaaaatagc agacttttaa gttttattat caatatgata aaaacagaaa
     4261 gaaaaaatat aagcttatta agaggttatg aaaatgctga aatttcaaga catatcagca
     4321 atcaaatttc acaaaaaagc gttgattctt tgatagcaag tgcgcaaaaa cattttaact
     4381 tagtatcgca attttacaaa agaaaaaaac aaattttagg ctatgatgag cttaaagact
     4441 atgacagata tgcacccata ggaaaagaag caagttttga ttttaaaaca agtaaaaata
     4501 ttgttttaga ggcatttcaa gctttttctc ctcaatttta tgatatagca aaaaatgctt
     4561 ttgatcaagg ttggattgat gtttatccgc aagaaaataa acaagggggt gctttttcgc
     4621 attctgcaac ttctgatgca catccttttg ttttattaaa ctacaccaat aaaagacgcg
     4681 atctttttac acttgcacat gaattaggac acactatcca tcaaaaactt tcttataatg
     4741 taagctattt aaatcaaaat acacctttaa ccaccgcaga aacagcttca gtttttgctg
     4801 aaatgctcgt atttgatttt attaaagata agttaaaaaa agaagaactc ttatctttat
     4861 atgcaaataa aatcgaagat atttttgcaa ctttttatag acaaattaat tttacttgtt
     4921 ttgaaagacg cttacatgct caagaaaatg aacttagcac tgaagaaatc aataaaattt
     4981 ggatggaaga atctcaaaag atgtttcaag acagcgtaaa acttacaaaa aattatgctt
     5041 cttggtggag ttatattcct cattttatcc attctccttt ttactgctat gcttatgctt
     5101 atgcacaact tttagtttta gctctttatg gactttacaa aagtaaaaaa tgtgaaaatt
     5161 ttaaagaact ttatatcaaa atgctttctt taggtggaag cgtgagtcca aaagaactag
     5221 taggaatgtt tggatttgat atagaagatg aaaatttttg ggaaataggc ataaaagaaa
     5281 ttcaaaaact catcaatgaa ttcatggagt tacaatcatg ctagaaacaa tcttaaaaaa
     5341 tgaaaatttt atccatacca tgcaaaagca ttgttatgaa gttatttcac accttataga
     5401 agaaaatata gaattttcca tagttgcaaa tacaaatttc atagatttta accctgaact
     5461 tcccaaagag cttgatatta aacaaaatcc ttatgctctt tttgctcttg gaggatacac
     5521 ctttgaatcc atacaactaa ataaagattt cattcaattt cacgcaggtt ttggaaatga
     5581 tgattttgat agttttgtaa aggttgattt aggagctatc acgcaaattc aagtagaaaa
     5641 tagcatttta ttcgttaatt ttagtcttta taaacgtgaa gatagcaaaa atttacaaaa
     5701 atctaaaaat atatttttaa ataatccaaa aaataaagat attttcaaaa aatgaatcta
     5761 tttgaagatt taaatgatag tcaaaaacaa gcggtaagcc acattgatgg agccatgctt
     5821 atcctagcag gcgcaggtag tggaaaaacc aaaactatca ccactcgtct tgcttatctt
     5881 atcggtgaag taggcatccc ctcacataac actcttactc ttacttttac aaataaagca
     5941 gctagtgtta tgcgtcatag agcattaaat tttctacaag gcaatcacaa tcctttgctt
     6001 tgcacctttc ataaatttgg acttttattt ttaaaactcc attttgaaag attggagcgt
     6061 aaaaatagtt ttattgttat cgatacagat gatacaaaaa aaataattaa agacttaatc
     6121 catgataaaa acaaagataa tgtctatgat attatccaat acatatctta ttgcaaaaat
     6181 gaaggcaaaa gagtaagcaa tgtctttgaa gatttaaatt tactaaaaga acataatttt
     6241 gaaaaatatc aaaatgaata caaatttgcc aactattacc gtgcttatga agaatactta
     6301 ttaaaacaaa attttgtaga ttttgatgat cttttattgc taagcaatct cattttagaa
     6361 aatgatataa attttgccaa agaacaaagc ttactttata attacattac agttgatgag
     6421 tatcaagata ctaatacctt gcaatataaa attctaaaaa atctatgttg tatgcatgaa
     6481 aatatcacag ttgttggtga tgatgatcaa agtatttata gttggcgtgg agcaaaaatt
     6541 gaaaatattt taaattttca aaatgatttt aaaaatgtta aacttgtaaa acttgaacaa
     6601 aactatcgtt cagtagggac tattttacaa gcagcaaata atctcatatc tcacaatgag
     6661 caacgacttg gaaaaacttt aatctgcact aaagatactg gggaaaatat taaaatatta
     6721 aaaaacgaaa acgaaaaaga tgaaggttta tatatcgctc aagaagtgaa aaaattgcta
     6781 aattctggag tagaagctaa agagatcgcc attttatttc gagttaatgc actatcaaga
     6841 gcaatagaag aagcatttat gaagaaacaa atttcttata aactacttag tggtatgcgt
     6901 ttttatgaga gattagaaat aaaagattta atctcgtatc ttagacttat cttaaatcca
     6961 agcgatgatt tgtcgtttaa acgtattatt aatcgcccca aaagatccat aggagaaaaa
     7021 gccctaaaaa atttagaaga atatgcaaaa aaacgtcaaa tttcactttt tgatgcccta
     7081 tgcgaaagcg atggtggtgt aggaatttta acaacaaaaa aagcacaaaa tgaagcaaat
     7141 atttttatac aaaatattca cactctaaaa agctacgata atgcaaaaaa ggtttttgac
     7201 aatatagaag aattatttaa aatcaaagat tatttttcag agcaagatga tggagatgaa
     7261 agaatcagaa atcttgatga gttttatgct aatctaagag aaaaactcaa agaagatccc
     7321 aaagcttctt tagaagatct acttagtgaa atttctttat taagcgatca agataattta
     7381 gatgaagaat gtgtttgctt gatgagtatt catgctagca aaggtttgga atttgattat
     7441 gtttttataa taggctttga tgaaggattt tttcctttaa atagcgaaga aaatctcgaa
     7501 gaagaacgcc gtcttgctta tgttggcatc actcgcgcca agaaatttct cacaataagt
     7561 gttgcaaatt ctcgttttta tcatggttca agagcaaata tcaatcctag tcgcttctta
     7621 gaagaaagta aattaatcaa tgaaaaatca aaaaatcaaa atatacaaaa aactagtttt
     7681 tgcaaaggag atctagttaa acataaaatt tttggcattg gcagggttgt tgaagttaat
     7741 aaaagcggaa aagaggaaaa gcttaatatt aattttggtg gtataatgcg tgtaatcatg
     7801 gcaagctttg tggaaaaagc agtatgaaca agatctttgc agcctttaaa ccaaagggtt
     7861 tgagttctaa tgccttttta agtactttaa agaaaaaata taaaaataaa aaagcaggat
     7921 attctggcac tcttgatcct ttcgccaaag gggttttaat cgttgcattt ggacaataca
     7981 caaaactttt ccgtttttta aaaaaaaccc caaaaaccta taaagctact ttatggcttg
     8041 gagtttactc cttaagtctt gatgatcaaa atataaaaga aattcaaaat ataaaagaat
     8101 ttgatcttgc aaatttaaaa caaatcattg atcaaatgca aggaattatc tcctatacac
     8161 cacctcaatt tagcgccaaa agaatcaatg gaactcgcgc ctatgaactt gcaaaaaaag
     8221 gtatagaagc aaatttaaaa ccttgtcaaa tggaagtatt tgattgtaag atcttaagct
     8281 ataatcatcc ttttttaaat attgaaatca cagtcagtga aggtgcttac ataagatctt
     8341 attgtgaact ttttgctaga aaactaggta ttaatgcgac tttaagctct ttagagcgca
     8401 ttaaagaagg caaatttgtt tataataatg agaaaagctt aaatgtgtta aaatacatta
     8461 acctaaagcc aaattttatc aaggatttaa ataaactcga aaatggtgct aaaatttttg
     8521 tcgaagaatt agaatttcat gatgaaggag attattatat tgaaacagaa aaatatttta
     8581 gcataattaa tattaaagaa aatacagtaa aatatcttct aaataaggtt gaaaaatgtt
     8641 aatattatca agaaaagaaa atgaaagtat aattatcgga gaaggtatag aaatcaaagt
     8701 cgttcaaaca gggaaaggat atgccaaaat aggtatagaa gctccaaaat cccttatgat
     8761 acttagaaaa gaacttgttc aacaagtaaa ggatgaaaat ttgcattctg ttgttcagaa
     8821 tgatattaaa cttgatgact taagcaaaaa actaatcaaa tgaaagctta cgctaaagca
     8881 aatatttttt taaaacttac cggttttgac tcaagaaaat atcatctttt agaatcacga
     8941 tttatacttt taaaagatgt ttttgatgag cttgagctta ttgataaaga atcagattct
     9001 aaaaaagaat ttgaaatcat tagtaatttt aaatgcgaaa ataatattat tcaaaaggct
     9061 tatttgctac tttctagaag atataataac gaattaaaag aattatttag caaaaaaagt
     9121 ctaaaactca caaaaaatat cccagtatgt gctgggcttg gtggtggaag tagcgattgt
     9181 gcgagttttt tactactaat aaatgaaacc ctaaatttaa aattaaacct acaagaactt
     9241 ataaatttaa gcatacaact aggaagtgat attgcctttt ttttaagtgg ctttcactct
     9301 gctaatgtaa gtagctgtgg cgaaattata gaagaatttg aagatgacat acctaattta
     9361 aaatggactt ttccacaaat atcttgccaa actaaagctg tttatgatga atttgataga
     9421 ggaatatttg actttcaaaa aaacaataat caagcgcaaa tctacaaaaa actcagcaca
     9481 aaagagttgt tacaaaactt taaaaacaaa gaattaaatg atttatttac tccttgtgca
     9541 actttatatc ctaaaatgaa gtcttacttg caagaagatt tttttctaag cggtagcggt
     9601 agtagtgttt ttaaggttga tcgatgaaaa ttattgcgag aaataaaaaa gctttatttg
     9661 attatagcat catagaacgc tttgaagccg gaattgtcct taaaggaagt gaagttgtag
     9721 ccttaagagc aggaagagca aatcttaaag actcttttgt tcgcattata aaaaatgaga
     9781 tttttttact taattctcat atttcattgc ttcatactac acattctttc tataaacaca
     9841 aagaaagagg tgctagaaag cttttaatgc atagaaagca aattgataaa ttattaggta
     9901 aagtaagtat agaaggatat actatcgttg cattagatct ttattttaac acaaaaaata
     9961 aagtaaaagc tacccttgct ttagctaaag ggaaaaattt gcacgacaag cgtgaaactt
    10021 taaagaaaaa gcaagccgat ttagaagcta gagctgctat gaaaaattac aaataaagga
    10081 aaataaatga aaaaaatttc agccctattt ttaataagtt tagcattttt tcttaatgct
    10141 tgctccaagg aagaagaaat tcaaaatgat tttatgtttg aagagtatca caaaggagat
    10201 aaaatagtct taaatagtgt aaatggtgga agcaaaactt taataagaac agataaaggt
    10261 tttgtggtgg aaggagagga aggaaaagtt ctaatgtttg atttttttgg cactttttgc
    10321 accccatgta aagaagaagc tttagatctt agcaaacttt ggaaaaataa ttctagcaaa
    10381 tttatcatta taggacttac acattttgaa gatgttagcg atgaaacagt taaaaaattc
    10441 gcgggtgatt atggtgctta ctattttcta agcaatggca gctctaatga tcgtattatt
    10501 gctcaaattt taaaagatat agactatcaa aatatggagc aacttccttt taaagttgtt
    10561 ttaaaaaatg gaatttatca aaaaataagc gattactgga ataataatac tccaacaaat
    10621 ttttatcttg gtaaaattcc aacagaactc atgcaagaag atttaaataa aatctacaaa
    10681 ggaaaataat gccaaaaacc caaactctag agcaaacaaa acttagtgaa ccaaaaatgt
    10741 ataaagttat actcttaaat gatgatgtaa caaccatgga ttttgtcata gaaattttga
    10801 tgaatatttt tcatcaaaac cttgagaaag caagtcaaac aatgttagaa attcatcaca
    10861 atggttctgg aatttgtggc atttacaccc aggaaatagc tctttcaaaa caaaaaaaag
    10921 ttatggatgc ggctaaactt gctaattttc cactacaagc aaaggtggaa gaagaatgaa
    10981 ataccaagaa aatttacaaa aatatcttga taatgccaaa aatctaagct taataaatca
    11041 ccatgaattt gttacctgtg agcatgtact gtttgcatta ctaaaactaa gcactgattt
    11101 taaggatata tttgaagaat tttcagatgg agatcttgaa cttctagaaa ctgaattaaa
    11161 aaattacatt tctcaaaaca atcaagttat taaacaagaa atagaaccta caatatctgt
    11221 tgttttagat gaaatcttac tttcatctaa aaataaaaat aatgaaatta aaattataga
    11281 ttttttagaa aagctcatac aggattcaag aagttattct agctatctct taaaaaaaca
    11341 caacataaat cttaacaaaa ttcaagaact tcaaaatcat gaaaatatac aaaatttaaa
    11401 caaccacaca agtgatttaa cacttttagc tcaaaatggc aaaattgatc ctttaatagg
    11461 aagaaaattt gaacttgaaa gaatgatgca aattctttca cgtcgcaaga aaaataatcc
    11521 tattttagta ggagaagcag gagttggaaa aacagccatt gtagagggat tagcattggc
    11581 tattgcggaa aaaaaggtgc ctaaaaactt acaaaatgca aaaattttta gtcttgatat
    11641 ggctagtata cttgcgggaa caaaataccg tggagatttt gagaaaagaa ttaaagaaat
    11701 tttaagtgaa cttgagaaaa tacccaatgc tattttattt attgatgaaa ttcacactat
    11761 agtaggagct ggaagcacag gagaatctca tactgatttt tccaatcttt taaaaccagc
    11821 tctaagcaat ggaactttaa aatgcatagg tgcaacaact tttatggaat ataaaaatac
    11881 ttttgataaa aataaacccc taagtcgccg ttttgctaaa ataaatgtag atgaaccaag
    11941 ccaagaagaa agcttgcaaa ttcttaaagg attaaaaaac aaatatgaag aatttcatca
    12001 tatcaaatta aacgatgaaa ttcttcaata tgctgtaatt tggggtaaaa aattttttaa
    12061 tgataaattt ttacctgata gcgctataga tctgatcgat gaacttggcg cttcttttgc
    12121 tttaaatcca agagctaaaa aaaatgccaa tttaaaagat ttagaaaatg ttttagcaaa
    12181 aatgacccac catcacaaaa tgtttgaatt cgatcaaaat aaagctttaa tgaacttaaa
    12241 aacaaattta aaagcaaaaa tttttggcca agatgaagtt atagatagcc ttgtttcatc
    12301 acttaagcaa agtttcgcag gatttaaaaa ttccaataca ccacgcggag tgtttttgtt
    12361 tactggatca agtggagttg gaaaaacaga actttgcaaa gctttagctg aatttttagg
    12421 tttaaattta gaacgctttg atatgagtga atatgcagaa aaacatgcta taagtaaact
    12481 aataggatct ccagctggat atataggttt tgaagagggt ggacttttaa gcaatgctat
    12541 tcgcaaaaat cctttcagtc ttgttctttt tgacgaaata gaaaaggctc atcctgattt
    12601 aagcaatacc tttttacaga tttttgacaa tgctgaactc accgacaata gtggtcttaa
    12661 agtagatttt aaaaatacaa tcattattat gacatctaat ctaggactta aagaaagcaa
    12721 tgagcttggt tttttaagta aaaatgaaga aaaaagtaat cgtgctatca aagacttttt
    12781 tgctccagaa tttattaatc gcattgataa aattttacat tttaatgatt taaacgatgc
    12841 tatacttgtt aaaattatcg aaaaagaact tgacgaaatt tctaaaaatt taaataatat
    12901 aaaattatca gtggatgata aagctaaaat ttatttagct aaaaaagcct ataataaaga
    12961 atttggagta aggcttttaa aacgcataat ttctgaggaa ataggagaaa aaatcagtga
    13021 tgaaatttta tttggaaagc ttaaaaaagg tggtatagct aaaatcaaac ttggtaaaaa
    13081 tgaaaagctc gaatttatat tctaaattac tcaatgcgcc taaaaatgct cctgtatttt
    13141 taagtcaaaa tttagaagct gattttattg taaaagctta tacttttggt ctattcccat
    13201 ggacaagtaa acctgtaact tggtggtgtc cagatcctag atgcatttta attccaaatc
    13261 aaattcacat ccaaaaaaat atgaaaaaat ttattaatct ctatcaaatt aaacttgatt
    13321 atgatttttt aaaattaatt acattatgtc gcgatacacg ctctcaaagc tggatagatg
    13381 atgaatttat taccacttat tataagttat ttacccaagg ctatgcgcat agccttgaac
    13441 tttatgaaaa taatgaactt ataggtggaa tttatggttt aattttaggc aaggttttct
    13501 ttggtgaaag catggtaagc attaaaaaaa atgcatctaa agttgccatg attaaacttt
    13561 gtgatttatt aaaaccttat gattttatca tagattgtca agtttataac caacatttag
    13621 aatttatggg tgctcataat atttctagga aagaattttt aaatatttta aaagaaaaat
    13681 gcaatcaaga aagtggtttt aaaaatttta aagatttaat tacttaaaaa taagcgtgaa
    13741 aatcacgctt atgacatcgc tttagcaact tcagcagagc tttcacgaat tttctccata
    13801 cactctcttg cttcttttgc aagttcaaca ctctgattaa catcctctaa accgctttta
    13861 atactctcaa ccacttgtga tgtaacattg cgaatagaat taatcgtagt ggtaatttca
    13921 ttaaccgaat gccctgttct ttcagctaaa tttcttactt catcagcaac aacagcaaaa
    13981 cctctaccat gttcaccagc acgtgctgcc tcaatagcag catttaaagc aagcagatta
    14041 gtctgatcag caatatcact aatagtttga ataatagatt taatttcatc tgattgttga
    14101 tttaatgagg aaacaagatt tgaactttga gacatcatat cagcaatatt ctgaacattt
    14161 gaaacagtgt tttcaattac acgatctcca tcttgagtaa gattatcatt tttttctgca
    14221 agttcgctta tgaggcaaag tttttcttga tcttttttaa cttgttcgct tatatctgta
    14281 gcaaatttaa taaccttgta aatttttcca tcatcatttt taaccggatt ataacttgct
    14341 tcaaggtata cttttttatt atttcttccg tatcttatat atttacctga ttgaaatttg
    14401 ccctctctta aatcttccca aaattgaaca tagtccttag agtgtctata attagaatca
    14461 cagaacatgc tatgatgctt tcctttaatc tcatcaatat taaaatccat agttcttaaa
    14521 aaattttcat tagccgtaat aatagtccca tcaggtttaa attcaataat agccatagaa
    14581 cgattagcag cagcaatagt atttctaaga tcaagcattt cataatgtct ttgagttata
    14641 tcattggcaa atttaataat tttataaaca tgaccattat tatcactaat tggaagataa
    14701 tttgcttcta aataaacatc tatccctccc ttagctatac gtctaaaaag accacttcta
    14761 gcttttccat ctcttaaatc tttccaaaaa tcactatatg ctgaagaatt aacaacttca
    14821 ggcaaacaaa acatactatg atgcttaccc ttgatctctg aaagggagta tttcatagtt
    14881 gttaaaaaat tttgatttgc ctctaaaata acgccatcgg tagtaaattc aattaccgcc
    14941 atggtattcc caatagatct taaaatatct cctaaaccat tacatttttt ttcaagttgt
    15001 tcaattattt tagtattatt tttcttagca ccaaacataa aactca
//
LOCUS       DAPIWQ010000030        14406 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.030, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000030 DAPIWQ010000000
VERSION     DAPIWQ010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14406
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.030"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(4..198)
                     /locus_tag="RJ267_000646"
     CDS             complement(4..198)
                     /locus_tag="RJ267_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HDV7388523.1"
                     /translation="MARVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
     gene            338..985
                     /gene="rpe"
                     /locus_tag="RJ267_000647"
     CDS             338..985
                     /gene="rpe"
                     /locus_tag="RJ267_000647"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HDV7388524.1"
                     /translation="MYVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTISKLPLDVHLMVKDVSKFVDLFISLKPKFISFHMESEVHPIRLCEYI
                     RSQGIHPAIVLNPHTPIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLIHEKIKELRQM
                     IDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIFSSNDYKTAISSLKLEF"
     gene            982..1743
                     /locus_tag="RJ267_000648"
     CDS             982..1743
                     /locus_tag="RJ267_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HDV7388525.1"
                     /translation="MSLQQIDQIISILNKQSKPYDWVMQEFAKVEELKNFDLDLETFE
                     LLGLGLTLNKDNIFTLKTRTTKIKDEIFCIVDIESTGGVSKGEILEIGAVKIQNSKEI
                     GRFQSFVKVKEIPKNITELTGITYEMVENASSLAKVLSDFRLFLKDSIFVAHNVRFDY
                     SFISKALNECGFGILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENMHHRALDDAL
                     AAAEIFKYCLGKLPYHIKTTEELINFTKTARIKQK"
     regulatory      1765..1869
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            1926..3218
                     /gene="thiC"
                     /locus_tag="RJ267_000649"
     CDS             1926..3218
                     /gene="thiC"
                     /locus_tag="RJ267_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HDV7388526.1"
                     /translation="MKTQMNYAKEGIFTKEMQIVAQKENLSKDFLLENIACGKIIIPA
                     NINHKSLDPNGIGFGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFGIEAIMDLSNYG
                     KTSRFRDELVNVSKAMIGTVPVYDAVGFLEKDLKQINAKDFLDVVYHHAKSGVDFMTI
                     HAGINSRAAHIFKQSKRLTNIVSRGGSVLYAWMMMKDAENPFFEYYDDLLDICLKYDV
                     TLSLGDALRPGSTHDASDGAQISELIELSLLTQRAWDVGIQVMIEGPGHMAINEIEAN
                     MQLEKRLCKGAPFYVLGPLVTDIGAGYDHISGAIGGAVAAASGADMLCYVTPAEHLRL
                     PNLEDVREGIVATKIAAHAGDIAKLPKERARDDEMSKARQEIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQILKGEDVSLA"
     gene            complement(3210..3728)
                     /locus_tag="RJ267_000650"
     CDS             complement(3210..3728)
                     /locus_tag="RJ267_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388527.1"
                     /translation="MKDKSLEEIDLLKLIICALSFISVCTALILFLLLPTLKNYKQAN
                     LRENSQLAILKAAKSKFDFSEDKISTLRSENNKSLEQFEQNFNIGNFNIFLQKYFQNV
                     KIQETKPEKQEKYLKNRLAIKATMNNPRRLYDFIDALKNYNNLIKLDYPLNLKAGEQG
                     ISIDLTLKVYSS"
     gene            complement(3718..4245)
                     /locus_tag="RJ267_000651"
     CDS             complement(3718..4245)
                     /locus_tag="RJ267_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388528.1"
                     /translation="MTYSFIQPRKKPIFTLFDKIWLGLFGFSILFILLVYFTYTIKIA
                     LINSSIDDEKQQVIVLQNQTKQNEMLYEILFDQSQIAKNFNTQNQIVKESLRNLFDII
                     VKTDNITLESVEQDEYSLKLIGVTPTREMFTLLLETPLKSIFDQSYTTYYRLDNGWYR
                     FVSISKQIPGVADER"
     gene            complement(4242..5201)
                     /locus_tag="RJ267_000652"
     CDS             complement(4242..5201)
                     /locus_tag="RJ267_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HDV7388529.1"
                     /translation="MLFLLKKIFPQLFISIILEDKKNIVKASIYRGNKLISSNEKTFD
                     KSENLLEYIKNLSKHFLFYHTALFLDAKEQGLIPSTNIQDCEHFNIGKISLQHILLNN
                     ALVYTATEHVEYYSELFEEYRGLDFLYSPFALLYYNMQKEKQPDDQILLYGFKQGYLL
                     AIIVAKGNTILYGDFKIFEQELGLELELPSEDNQEIENNNDDTEVTLDNFNEALNNKF
                     DLLDQENNLETLDNNDNFNLDELNQFSNDMELCRYIITSIEKFYNDDKYAGVFINGIL
                     LYSESDININAIDFLESETFLEIKTKQINTLDLMIELMRKEVK"
     gene            complement(5203..5832)
                     /locus_tag="RJ267_000653"
     CDS             complement(5203..5832)
                     /locus_tag="RJ267_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HDV7388530.1"
                     /translation="MGKSFKIHCLTYIIFILQWLIFLSCKKHYKGEKVDRKAGVILFW
                     HGKLALMPFAFRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSAL
                     RAAFKVLEQNDDIVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWKFKSW
                     DKMILPKPFSKITYSLSEPLDILSLDKEKAKEFLMKQFDKISLADQFKE"
     gene            complement(5816..7117)
                     /gene="miaB"
                     /locus_tag="RJ267_000654"
     CDS             complement(5816..7117)
                     /gene="miaB"
                     /locus_tag="RJ267_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HDV7388531.1"
                     /translation="MSAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVL
                     GARNISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGY
                     TKEWYLNRALKLRELCPNVSISTDIIVAFPGESEKDFEETVDVLEKVRFEQIFSFKYS
                     KRPLTKAATMPNQIDEEIASRRLSTLQNRHSEILDKIVKKQENKTFKVLFEELRAGNS
                     IAGRTDNNFLVQVEGSEELLGQFKEVKITNAKRMVLYGEIV"
     gene            complement(7114..7356)
                     /locus_tag="RJ267_000655"
     CDS             complement(7114..7356)
                     /locus_tag="RJ267_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388532.1"
                     /translation="MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQ
                     LIALVNHFEKKGVSIYHRTVKYGLDDNDFMYEVHIL"
     gene            7484..8572
                     /gene="nusA"
                     /locus_tag="RJ267_000656"
     CDS             7484..8572
                     /gene="nusA"
                     /locus_tag="RJ267_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HDV7388533.1"
                     /translation="MEKIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEF
                     FVDPKNLNLYQKITIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENL
                     GRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRA
                     FLPRKNRIKGEKFKIGDVVKAVIRRVYTDKGIKIELSRTSPKFLECLLEAEVPEIKDG
                     YVNIIGCARIPGERAKIILQANGTNIDPVGATVGVKGVRINAVSKELHNENIDCIEFT
                     NESEILISRALAPAIVNSVKIEDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIE
                     LNELSSSQLNNAISNEEAMKNLQDLFKI"
     gene            complement(8588..9775)
                     /locus_tag="RJ267_000657"
     CDS             complement(8588..9775)
                     /locus_tag="RJ267_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7388534.1"
                     /translation="MNYIELLKNNKNIRILASVQFIVYFGAWFSQTGVFTLLVELNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLSMISIELISIFCLIFVTSLSML
                     WLLFILIFIRLCVASIYFQAEMSLLAKILTPQELKLANEMHSVIWAISYTAGMASAGI
                     FIYFLGVKTAFLFDCILILIGISFLVRLSIPDFHQKTQSRFFTMIKEGFFYVLNNKII
                     FHLILLHAFIGLTAYETLVTLLAQHQYKEVLSAALVIGFLNAVRACSLAIGPMVLSKF
                     INDKNLFYMYLGQGLGIILWALTQFNFYISFLGLIGAGFFTSALWAYTYTMIQKNADK
                     EYHGRVIAYTDMIYLSFSAIISMLMGFLFEIGLSLELITGLLGMIFIFAAFYWKWFYK
                     KYL"
     gene            9849..10895
                     /locus_tag="RJ267_000658"
     CDS             9849..10895
                     /locus_tag="RJ267_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HDV7388535.1"
                     /translation="MKRLDKKEALDLLHHASLTELGEMAYKRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISITEVLKRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRQAHKIGMKSTATMMFGTVENDEEIIDHFE
                     HLRKLQDETGGFRAFILWSFQSDNTALIQKHPEIMKQSSNKYLRLLALVRLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIRSLGEN
                     PAKRNTAYEILERF"
     gene            10895..12115
                     /locus_tag="RJ267_000659"
     CDS             10895..12115
                     /locus_tag="RJ267_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HDV7388536.1"
                     /translation="MQYLESRGIKIPFIFEKNSDFPIVVLKLVFRNCARSYDEIAGLA
                     KMFSRILNEGVDDKFFKDLEFRAINLEASSGFESLEINLSCLKENFDFALKSLEKLLL
                     KPRIEEKTLQKLKINALGELASKNSDFDYLAKNLLNAQIFKCKEFQSPNDGDEKSIET
                     LSLKDLQNFYKNFIHLSDLVVILGGDLEEKQAKEDLLKLLSKLQIGKKNTPKKYELGK
                     NIKDEILVRPESEQAYIYFATPFFADFKDKDLYLAKIALFVLGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNMSFSRVFGYLQTKNESAKEAKKIVKELFEDFIKNGMTQNELDQA
                     KNFLIGSTPLRYESLSKRLSMSFNEFYQGLNLGYYKEELKLMEKVKLETINAYIKKHQ
                     ELLNISFASIQNEN"
     gene            12105..13928
                     /gene="recG"
                     /locus_tag="RJ267_000660"
     CDS             12105..13928
                     /gene="recG"
                     /locus_tag="RJ267_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HDV7388537.1"
                     /translation="MKIKESDFEFFKKLKIRSAIDLALLLPKKIENLNPSKNPKENEI
                     CTQKITIKSVSSRKNQLFGLGFCEEWQENISFVFFHPRAWHFGICKVGKELIFNAKLS
                     HFNHTWQFNNPKILTSFEGFSPKYQILGLKDTKIAAFIHKYLNYENLKESGIEDKYIH
                     FLLNLHAYDEKSFFMFENLQNFSKDLKYIEIYNFLKRLKAKKTHFKAHQINVFNIANW
                     LKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAI
                     LMAPTSILAYQLYEEAKKFLPDFMNILFIKGGKKEKDLEQNIQKANLVIGTHALIHLE
                     SHNAVLVMIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLSMIQSELLNFS
                     FIKQMPFKKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLLSASDKIPYLSLEQ
                     AKEYWQSHYEKVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGISLPRLSMIVIVG
                     AERLGLATLHQLRGRVGRVGLKSACYLYTKLKEIPSRLKEFASTLDGFKIAELDLKNR
                     LSGDLLDGFMQHGNEFKFFDFSKDEEILEKVKKDLAKKLPN"
     gene            complement(13925..14308)
                     /gene="ctb"
                     /locus_tag="RJ267_000661"
     CDS             complement(13925..14308)
                     /gene="ctb"
                     /locus_tag="RJ267_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HDV7388538.1"
                     /translation="MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWK
                     EHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQEFFEIWLKLFEESLNIVYNEEM
                     KNVILQRAQMIASHFQNMLYKYGGH"
BASE COUNT         5064 a         1947 c         2393 g         5002 t
ORIGIN      
        1 aaattattta gaattttgtt tttttagagt tcttagagta gaagctgcaa ttctcatttt
       61 tctcgtggtg ccatcttcta aagttacacg aactgttctg agattaggta aaaagcgtct
      121 ttttgtttta ttgttagcat ggctgacatt attacccacc attggaccct tgcctgtgat
      181 ttgacatact cttgccattt ttttgtcctt atgaaaattt ttaaatggag attttatcaa
      241 aattaagctt aaaatattcc ataatttata gtttttttaa tatataagtc gataaaatat
      301 tatttatcac atttatatat agtttaaggt tttgatcatg tatgtagctc caagtttatt
      361 gtctgcaaat tttttgaaat tagaagaaga agttaaagct attgaagctg caggtgcgga
      421 tcttttacac attgatgtaa tggatggaca ctttgttcca aatttgactt tcggaccttg
      481 cgtgatcgaa aaaatttcaa ctattagtaa gttgccatta gatgtgcatt taatggttaa
      541 agatgtaagt aaatttgtag atctttttat ctctttaaaa ccgaaattta tctcttttca
      601 tatggaaagc gaagttcatc ctataaggct ttgtgaatat ataagaagtc aaggaatcca
      661 tcctgctatt gttttaaatc cacatactcc tattgattct attaaacaca tgctagaatt
      721 tgtagatatg gtgcttttaa tgagtgttaa tcctggattt ggtgggcaaa aatttttacc
      781 tttgatacat gaaaaaatca aagaattgcg ccaaatgatt gataaaaaaa atgctaaagt
      841 ttttatagag gttgatggtg gtgttaatgg tttaaatgct agtgatttag aagaatctgg
      901 agctgatatt ttggtggctg gaagttatat tttttcttcc aatgattata aaactgcaat
      961 ttcatcttta aagcttgaat tttgagttta cagcaaattg atcagattat ttctatatta
     1021 aataagcaaa gcaagcctta tgattgggtg atgcaagagt ttgccaaagt tgaagaatta
     1081 aaaaattttg atttagattt agaaactttt gagcttttgg ggttaggttt aactttaaat
     1141 aaagataata tttttactct taaaacacgc acaacaaaaa ttaaagatga aattttttgc
     1201 atagtggata tagaaagtac tggtggggtg agcaaggggg aaattttaga aattggagcg
     1261 gtaaaaattc aaaattctaa agaaattgga cgctttcaaa gttttgttaa agtaaaagaa
     1321 attccaaaaa atataactga acttacgggt attacttatg agatggtgga aaatgcttca
     1381 agtttagcaa aggttttaag tgattttagg ctttttttaa aagacagtat ttttgtagcg
     1441 cataatgtgc gttttgatta tagttttatt tctaaggctt taaatgagtg tggttttggc
     1501 attttgctta atcgtcgtat ttgcactata gaatttgcac aatgttgtat agaaagtcca
     1561 aaatataaac tagaggtttt gaaagaattt cttggcgtgg aaaatatgca tcatagagcc
     1621 ttagatgatg ctttggcagc tgctgaaatt tttaaatatt gccttggaaa acttccttat
     1681 catataaaaa ctacagaaga acttataaat tttacaaaaa ctgcacgtat aaagcaaaaa
     1741 taaatattta aagtgtataa ttaaaacata aatgacggga gcttgtgtaa caggctgaga
     1801 gtaagctaaa agcttagacc gaaccggatc tggataatac cagcgtcggg aagatttata
     1861 aatttcaata ctttaaaaat ttatactcac ccttcattta tccaaatttt ttaaaggata
     1921 aatttatgaa aactcaaatg aattatgcca aagaaggtat ttttactaaa gaaatgcaga
     1981 ttgttgcgca aaaagaaaat ttaagtaaag attttttgct tgaaaatatt gcttgcggta
     2041 aaattattat ccctgcaaat attaatcata aaagtcttga tccaaatggt ataggttttg
     2101 gactgcgtac taaggttaat gtaaatttag gagtttcaaa tgattgcgtt gattatagcg
     2161 aggaaatgaa aaaagtagag cttgctcata aatttggcat agaagcgatt atggacttaa
     2221 gcaattatgg caaaacaagt cgttttagag acgagcttgt taatgtttca aaagctatga
     2281 taggaacagt tcctgtatat gatgcggtag gatttttaga aaaagattta aagcaaatta
     2341 atgccaaaga ctttttagat gttgtatatc atcatgctaa aagtggggtt gattttatga
     2401 caattcatgc aggtattaat tctcgcgcag cgcatatttt taaacaaagt aaaagactta
     2461 caaatatagt ttcaagagga ggctctgtac tttatgcttg gatgatgatg aaagatgctg
     2521 aaaatccttt ttttgagtat tatgatgatt tgcttgacat ttgtttaaaa tatgatgtaa
     2581 ctttatcttt gggcgatgct ttgcgtcctg gctctactca cgatgcaagt gatggggcac
     2641 aaatttcaga acttatagaa ttatcactcc ttactcaaag ggcttgggat gttgggattc
     2701 aagtaatgat agaaggtcca gggcatatgg ctattaatga aatagaggca aatatgcaat
     2761 tagaaaagcg tttatgcaaa ggagcgcctt tttatgtctt aggacctttg gtaacagata
     2821 ttggcgcagg gtatgatcat attagtggtg ctattggagg agctgtggct gcagctagcg
     2881 gtgctgatat gctgtgttat gtaacacctg ctgaacactt aagacttcca aatttagaag
     2941 atgttagaga gggtatagtt gcgactaaaa ttgcagctca tgcgggagat atagctaaac
     3001 ttccaaaaga aagagcaaga gatgatgaga tgagtaaggc tagacaagag atagattggg
     3061 agaaaatgtt taaacttgct attgatggag aaaaggctaa aaaaatgttt aatgagcgtc
     3121 gccctgatga tttaaactca tgttccatgt gtggaaaaat gtgtgcaatg aatactatga
     3181 atcaaatttt aaaaggcgaa gatgtgagtt tagcttgaat aaactttgag agtaagatct
     3241 atagagatac cttgctctcc tgctttaaga ttaagtggat aatcaagctt gattaaatta
     3301 ttatagtttt ttagagcatc aataaaatca taaagtcttc taggattatt cattgtcgct
     3361 ttaatggcta agcggttttt tagatatttt tcttgttttt cgggcttagt ttcttgaatt
     3421 tttacatttt gaaaatattt ttgtaaaaaa atattaaaat ttcctatatt aaaattttgc
     3481 tcaaattgct ctaaactttt gttgttttcg cttcttagag ttgatatttt atcttcgcta
     3541 aagtcaaatt ttgatttagc agcttttaag atagcaagtt gtgaattttc tctaagattt
     3601 gcttgtttgt aattttttaa tgtcggtaaa agtaaaaata agatcaaggc tgtgcaaacg
     3661 cttataaaac ttaacgcgca aatgataagc tttaataaat caatttcttc taggctttta
     3721 tctttcatct gcaactcctg gaatttgttt gctaatacta acaaaacgat accacccatt
     3781 atctaagcga taataggttg tgtagctttg atcaaagatg ctttttaaag gggtttctaa
     3841 aagtagagta aacatttctc ttgtaggagt gactccgata agttttaagg aatattcgtc
     3901 ttgttcaaca ctttcaagag taatattatc agtttttaca ataatatcaa atagatttct
     3961 taagctttct ttaacaattt gattttgagt gttaaaattt ttcgctattt ggctttgatc
     4021 aaataaaatt tcataaagca tttcattttg cttagtttga ttttgaagca ctataacttg
     4081 ttgtttttca tcatcgatag agctattgat taatgcaatt tttattgtat atgtaaaata
     4141 tactagtaag ataaataata tactaaaacc aaaaagtcct agccaaattt tatcaaagag
     4201 tgtgaaaata ggtttttttc ttggctgtat aaagctataa gtcatttaac ctcctttcgc
     4261 atcaattcta tcataagatc taaggtgttg atttgtttcg tttttatctc taaaaaagtt
     4321 tcactttcta aaaaatcaat agcatttatg ttaatatctg attcgctata taataaaata
     4381 ccattgataa ataccccagc atatttatca tcattataaa atttttcaat gctcgtaata
     4441 atataacggc aaagttccat atcattgcta aattgattta attcatcaag attaaaatta
     4501 tcattattat ccaaagtttc aagattattt tcttgatcaa gtagatcaaa tttattattt
     4561 aaggcttcat tgaagttatc taaggtaact tcagtatcat cgttgttgtt ttcaatttct
     4621 tgattatctt ctgatggaag ttcaagctct aaacctaatt cttgctcaaa tattttaaaa
     4681 tcaccgtata aaatagtatt gcctttagca acaataattg ccaaaagata tccttgctta
     4741 aatccataaa gtaaaatttg atcatcaggc tgtttttctt tttgcatatt gtagtaaaga
     4801 agagcaaaag gggaatataa aaaatctaaa cctctatatt cttcaaaaag ctcgctataa
     4861 tattctacat gttcggtagc cgtataaaca agggcattat taagcaaaat atgctgtaag
     4921 ctgatttttc ctatattaaa gtgctcacaa tcttgaatat ttgtactagg tattaatcct
     4981 tgttctttgg cgtctaaaaa taaagcagtg tggtaaaata agaaatgctt gcttaaattt
     5041 tttatgtact ctaataaatt ttcactttta tcaaaagttt tttcattgct actgattagt
     5101 ttatttcctc tataaataga agcttttaca atattttttt tatcttctaa aataatacta
     5161 ataaaaagtt gtggaaatat ttttttaagt aaaaataaca tttcattcct taaattgatc
     5221 agctaagcta attttatcaa attgtttcat tagaaattct ttagcttttt ctttatctaa
     5281 agataaaata tccaaaggtt cacttagact ataagtaatc ttactaaaag gttttggcaa
     5341 gatcatctta tcccaacttt taaatttcca aaaacgattt gcttcatagt ttaaaattct
     5401 tatctttagt tctttttttt gagccaaaat gatagaacca tctgaaatac tatgataagg
     5461 ccctcgtgga ccatcgggcg tgataactat atcgtcattt tgttctaaaa ctttaaatgc
     5521 agctctaagt gcactgctag caccccttga agtgcttcct cttacagtat caagaccgaa
     5581 aagcttgatg atttttgcaa tttgctctcc atctttatgg tgggagatca tgacataggc
     5641 ttttttattt ttttgtctat aatgtctaaa cgcaaaaggc atgagtgcta attttccatg
     5701 ccaaaaaagt atcacaccag ctttacggtc aactttttca cctttatagt gctttttaca
     5761 gcttaaaaaa ataagccatt gtaagatgaa aattatatat gttaagcaat ggattttaaa
     5821 cgatttcccc atataaaacc atacgctttg cattagttat ttttacttct ttaaattgcc
     5881 ctaaaagttc ttcgctacct tcaacttgaa ctaaaaagtt attatctgtt cttccagcaa
     5941 tgctattgcc tgctcttaat tcttcaaata aaactttaaa agttttattt tcttgttttt
     6001 ttacaatttt atctaaaatt tcactatgac gattttgtaa ggtgctaagt cttcttgaag
     6061 ctatttcttc atcgatttga ttaggcatgg ttgcggcttt tgttaaaggg cgtttggagt
     6121 atttaaaaga aaaaatttgt tcaaaacgca ctttttccaa aacatctaca gtctcttcaa
     6181 aatctttttc actttcccct ggaaaagcta caataatgtc tgtagaaatg ctaacatttg
     6241 gacaaagttc tctaagtttt aaagctctat ttaaatacca ttctttagta tagccacgct
     6301 tcatagcttt taaaatttca cttgagccgc tttgtaaagg catatgcatg gatttgcaaa
     6361 cttttggatt attggcaaaa acttctaaaa atttatcatc catgtgcaaa ggatgtggac
     6421 ttgtaaagcg aatgcgttcc aaaccttcta tagtgctaag ttcttctaaa agatctgaaa
     6481 agtccatttt tttatgttcg tttctaaatc ttttgccata gttattgaca ttttgtccta
     6541 gcaagaaaat ctctttagcg cctttttcaa tagctttttg agcttctttg tagatgatgt
     6601 taaaaggtat ggaaatttca tctcctctag tatgtggcac tatacaataa gtgcagtgtt
     6661 tatcacaacc tatggagata ttaatatagg atttataaat actatttcta aaatctgcaa
     6721 aagcaaattc actttcatca tagtctatat ccacgcccat aaattttgga gtttttatag
     6781 cttgagtgat tttggaaata tttcttgccc ctagaacaaa atccacataa ggagcacgtt
     6841 tgaaaatttc atttcccaaa tgtgatgcag tgcatccaca aactcctatt ttagcacctt
     6901 cttttttaac tttttcaaag ccacccactt ctgagaaaag tttatgcaca ggtttttcac
     6961 gcactgaaca ggtattaata agaataagat ctgcttcttt gatatcttct gttagtgcgt
     7021 aattttcttt ttgtgttaat tctgcgatca tatgctcaga atctctgaca ttcatcgcac
     7081 aacctaaagt ttggataaaa agttttttag cactcaaaga atatgtacct catacataaa
     7141 atcattatca tcaagtccgt attttacggt tctatgataa atgcttactc cttttttttc
     7201 aaaatgattt acaagggcaa tgagttgttt gtgtgtatta tctttatcaa aataaaaaaa
     7261 cttttgtcct tctttttcta tagcctcttc gattttttct aggctaatat ttttaggttt
     7321 ttcattaatc aaagttcttg ccaattttaa ttccatagct aaatccttaa gaattttcat
     7381 tttaatctat aattttagca aattttactt ttaattaaac ttattaagga tataattttt
     7441 atctacatta tttaaatttc ccacaaaaaa ggttttataa aatatggaaa agatagcaga
     7501 tattatcgaa tctattgcta atgaaaaaaa tttaaactta gagaatgtaa gagaaaaggt
     7561 agctaccgct ttaatcaata ctgcaaaaag aatttatgga caagaatatg agttttttgt
     7621 ggatcctaaa aatttaaatc tttatcaaaa aattaccata gtagcagata atgacgagag
     7681 attgcaaaat aaaagtgaga gttttatcgc gttaagtaag gcaaaatcag aagctccaga
     7741 tgttgaaata ggagatgaat taacctatga atgttctttg gaaaatttag gaagaactgc
     7801 ggtaaatacc ttgcataaag aacttgaata tcatatacaa aaattattag aacaaactat
     7861 ttttgaaaag tataaaaaca aagtagggca aatggttttt ggtacagttg ttagagtgga
     7921 taatgaagaa aatactttta ttgaaataga tgaattaaga gcttttttac cgagaaaaaa
     7981 tcgcattaaa ggggaaaagt ttaaaatagg tgatgtggta aaagctgtga tacgccgtgt
     8041 ttatacagat aagggtatta aaatcgagct tagtcgtaca agtcctaaat ttttagaatg
     8101 tttacttgaa gctgaggttc cagaaatcaa agatggttat gtcaatatta taggatgtgc
     8161 tagaattcca ggtgaaagag caaaaatcat tcttcaggcc aatggaacaa atatcgatcc
     8221 tgtaggagct acagtaggtg ttaaaggtgt aagaattaat gcggtaagca aagagcttca
     8281 taatgaaaat attgattgta tagaatttac aaatgagagt gaaattttaa tttctcgtgc
     8341 cttggctcct gctattgtaa attctgtaaa aattgaagat aaaaaagcta ttgtaagttt
     8401 aaatagcgaa caaaaaagca aagctatagg aaaaaatggt attaatattc gccttgcttc
     8461 tatgttaagt ggttatgaaa tagagctcaa tgaattaagc tcatcgcagc taaataatgc
     8521 catcagcaat gaagaagcaa tgaaaaatct tcaagatttg tttaaaattt aaaatatttg
     8581 tgaattttca caaatatttt ttataaaacc acttccaata aaatgccgca aagataaaaa
     8641 tcatacccaa taagcctgta attagttcta aactcaagcc tatttcaaat aaaaagccca
     8701 taagcattga aataatagcg ctaaaactaa gataaatcat atctgtataa gcgatcactc
     8761 taccatgata ttctttgtcg gcattttttt gtatcatagt gtaggtgtaa gcccaaagcg
     8821 ctgaggtaaa aaaacctgca ccgattaaac ctaaaaaaga aatataaaaa ttaaattgag
     8881 ttaaagccca aagtataata cccaagcctt gaccaagata catgtaaaat aaatttttat
     8941 cattaataaa tttgcttaaa accataggtc ctatagctaa agaacaagca cgtactgcat
     9001 ttaaaaaccc tattactaaa gcagcagata aaacttcttt atattgatgt tgcgctaaaa
     9061 gcgtaaccaa ggtttcataa gcagttaaac ctataaaagc gtgaagcaag ataagatgaa
     9121 aaattatctt attgtttaaa acatagaaaa atccttcttt tatcatggta aaaaagcgac
     9181 tttgtgtttt ttgatgaaaa tcaggaatgc ttaatcttac taaaaaagaa atgcctatga
     9241 gtataagtat acagtcaaat agaaaagcgg ttttaactcc tagaaaataa ataaaaattc
     9301 ccgcacttgc catacctgct gtataagaaa tcgcccaaat gacactgtgc atttcattag
     9361 cgagtttaag ttcttgagga gttaaaattt tggccaataa actcatttca gcttgaaaat
     9421 aaatcgaagc aacacaaagt cttatgaaaa ttaaaataaa taaaagccaa agcatactaa
     9481 gacttgtgac aaaaataaga caaaaaatag aaattaattc tatgctaatc atactgagta
     9541 aaagtttttt aggtttattt ttctctacta tgacgccatt aataggagca agtaaaactc
     9601 caggtaaaaa agcaagcata gcacttgtag ctgttgccca agtaggagca ttaagttcga
     9661 ctaaaagggt aaaaactccc gtttgagaaa accatgctcc aaaatatact ataaactgaa
     9721 ccgaagctaa tattctgata tttttattat tttttaatag ttcaatgtaa ttcataagcg
     9781 aaactatagc ataatttata ttttaaatgc tataattatt ttaattatgt aaaaaacaag
     9841 gaaaaatttt gaaaagactg gataaaaaag aagctttaga tttattacac catgcaagtt
     9901 taacagaact tggagaaatg gcttataaaa gaaaattaga acttcatcct gaaaaaatca
     9961 ccacttttgt tgtggataga aatattaatt ataccaatgt ttgttgtatt gattgttctt
    10021 tttgcgcttt ttatcgccat cataaagaag atgatgctta tattttaagc tttgaagaga
    10081 taggcaaaaa gatagaagag cttgaagcta tcgggggaac acaaattctt tttcaaggcg
    10141 gggtgcatcc aaaattaaaa atagaatggt atgaagaatt agtttcttgg ataaaagaac
    10201 attatccaaa tatcactgtg catggttttt cagcagttga gatcgcttat attgcaaaag
    10261 catctaaaat ttcaatcact gaagtgttaa aaagattgca agctaaaggt ttattttcta
    10321 taccaggagc aggtgctgag gtgctaagcg atagggtgcg tgatattatc gcaccaaata
    10381 aatgtgatac agctacttgg ttagaagtac atcgccaagc tcataaaatt ggtatgaaaa
    10441 gtacagctac tatgatgttt ggaacggttg aaaatgatga agaaatcatc gatcattttg
    10501 agcatttgag aaaattacaa gatgaaacag ggggatttag agcttttatt ttatggagct
    10561 ttcaaagtga taatactgct ttaatccaaa aacatccaga gattatgaaa caaagttcta
    10621 acaaatattt aagactttta gctttagtaa gactttattt agataatttt aaaaatttac
    10681 aaagttcttg ggtaactcaa ggctcactta taggccagct tgctttaaaa tttggggcca
    10741 atgatttagg ctcaactatg atggaagaaa atgtagtaag tgctgcagga gcaagttata
    10801 gaatgaatca agatgagatg ataaggctga ttagaagttt aggcgaaaat ccagctaaac
    10861 gcaataccgc ttatgaaatt ttagaaaggt tttaatgcag tatttagaga gtaggggtat
    10921 taaaatccct tttatttttg aaaaaaattc tgattttcct attgttgttt taaagcttgt
    10981 ttttagaaat tgtgctagaa gttatgatga aatagcaggc ttagctaaga tgttttcacg
    11041 tattttaaat gaaggcgtgg atgataaatt ttttaaggat ttagaattta gagcgataaa
    11101 tttagaggca agtagtggtt ttgaaagttt ggaaatcaat ctttcttgct tgaaagaaaa
    11161 ttttgatttt gctttaaaga gtttagaaaa attgctttta aaaccaagaa tagaagaaaa
    11221 aactttgcaa aaattaaaaa tcaatgcctt aggtgagctc gcgagtaaaa atagtgattt
    11281 tgattattta gcaaaaaatt tactcaatgc tcaaattttt aaatgtaaag aatttcaaag
    11341 tccaaatgat ggagatgaaa aaagtataga aactttgtct ttaaaagatt tgcaaaattt
    11401 ttataaaaat tttatccatc ttagtgattt ggttgtgatt ttaggaggag atttagaaga
    11461 aaaacaagcc aaggaagatc ttttaaaact cttatcaaaa cttcaaatag gcaaaaaaaa
    11521 tactccaaaa aaatatgagt taggcaaaaa catcaaagat gaaattttgg tacgcccaga
    11581 aagtgaacaa gcttatattt attttgctac gccttttttt gctgatttta aagataagga
    11641 tttatatctt gcaaaaattg ccttatttgt gctagggcaa ggaggatttg gttcaaggat
    11701 tatggaagaa attcgtgtta aaagaggtct tgcatactca gcttatgcta tgcttgatat
    11761 gaatatgtct ttttctagag tttttggata tttacaaact aaaaatgaaa gcgctaaaga
    11821 agctaaaaaa atcgtaaaag agctttttga agattttata aaaaatggca tgactcaaaa
    11881 tgaacttgat caagctaaaa attttctcat aggatcaact cctttgcgtt atgaaagctt
    11941 aagcaagcgt ttatctatgt cttttaacga attttatcaa ggtttaaatt tgggatatta
    12001 taaagaagag ttaaaactta tggaaaaggt taaacttgaa accataaatg cttatattaa
    12061 aaaacatcaa gagcttttaa atataagttt tgcaagcata caaaatgaaa attaaagaaa
    12121 gtgattttga attttttaaa aaattaaaaa ttagaagtgc tattgattta gcgcttcttt
    12181 tacctaaaaa aattgaaaat ttaaatccaa gtaaaaatcc taaagaaaat gaaatttgta
    12241 cccaaaaaat cactataaaa agcgttagtt caagaaaaaa tcaacttttt ggtttaggtt
    12301 tttgtgagga atggcaagaa aatatttctt ttgtgttttt tcatcctaga gcttggcatt
    12361 ttggtatttg taaggtagga aaagagctta tttttaatgc taaactctcg cattttaatc
    12421 acacttggca atttaacaat cctaaaattt taacttcttt tgagggtttt agtccaaagt
    12481 atcaaatttt aggtttaaaa gatacaaaaa ttgctgcttt tatacataaa tatcttaatt
    12541 atgaaaattt aaaagaaagt ggcatagagg ataaatatat acattttctt ttaaatttgc
    12601 atgcttatga tgaaaaaagt ttttttatgt ttgaaaattt gcaaaatttt agcaaagatt
    12661 taaaatatat agaaatatat aattttttaa agcgtttaaa agctaaaaaa acgcatttta
    12721 aagctcatca aatcaatgtt tttaatatag ccaattggct taaagatttg cctttttctc
    12781 ttactaaaga tcagcttaat gccttaaaag acatagaaaa agatttacac tcaaaagaag
    12841 ccaaaaggcg tgtgattatg ggtgatgtgg ggtgtggtaa aaccttggtt ttacttggtg
    12901 cggctttgat ggtttatcct aagcaagcta ttttaatggc acctactagt attttagcgt
    12961 atcagcttta tgaagaggct aagaaatttt tacctgattt tatgaatatt ttgtttatta
    13021 aagggggtaa aaaagaaaaa gatttagaac aaaatatcca aaaagcaaat cttgttatag
    13081 gcactcatgc tctaattcat ttagaaagcc ataatgccgt acttgtaatg atagacgaac
    13141 aacatcgttt tggatcagct cagcgtgaga aaattcattc tttaaataaa caagaatttg
    13201 cccctcattt tatacagttt tcagctacgc ctattccaag aactttaagc atgatacaat
    13261 ctgaactttt aaattttagc tttattaaac aaatgccttt taaaaaagat attacaactt
    13321 attgcataca aaatgaaggt ttttctaagc ttagcgagaa gatcaaagaa gaaatcgcta
    13381 aaaatcatca aattatcatt atttatccct tattgagtgc tagtgataag attccttatc
    13441 tttctttaga gcaggccaaa gaatattggc agagtcatta tgaaaaagtt tttgtaactc
    13501 atggaaaaga taaacaaaaa gatgaaattt tagagcgttt tagagacgag ggaaatattt
    13561 tactaagcac tacagtggtg gaagtaggta tttctttgcc aagattgagt atgatagtga
    13621 ttgtaggagc ggaacgttta ggacttgcta ctttacatca acttcgtggc cgtgtaggtc
    13681 gtgtagggct taaaagtgct tgctatcttt atactaagct taaagaaatt ccgagtcgtt
    13741 taaaagaatt tgctagcact ttagatgggt ttaaaatagc agagcttgat cttaaaaatc
    13801 gtttgagtgg agatttgctc gatggtttta tgcaacatgg aaatgagttt aaattttttg
    13861 atttttccaa ggatgaggag attttagaaa aggtaaaaaa agatttggca aaaaaattgc
    13921 caaattaatg tccgccgtac ttgtaaagca tattttgaaa atgtgaagct atcatttgtg
    13981 cacgctgtaa aatgacattt ttcatttctt cattataaac tatatttaaa ctttcttcaa
    14041 aaagttttag ccaaatttca aaaaactctt gaggaaaagg aggtagatct aagtgctttt
    14101 ttaagggttg cccattataa tcaccttcgc ctaaaagcat gcctgcccaa aaatttccta
    14161 tttttgcttt atgttctttc cattcttcat cgcttgttcc aatagcattg ttaaaaatag
    14221 gacctaaatc cttatctttt ctaacttttt cataaaatat ttccatgagt tttgctatgc
    14281 tttcttgatt aattgtttca aatttcatat aagcctttct taaatgttaa ttttatggcg
    14341 ttaatatagc aaaaataaga taaattaaat ttaacataag ttaagaatgg aaatattata
    14401 taatga
//
LOCUS       DAPIWQ010000031        14339 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.031, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000031 DAPIWQ010000000
VERSION     DAPIWQ010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14339)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14339)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14339
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.031"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            17..331
                     /locus_tag="RJ267_000662"
     CDS             17..331
                     /locus_tag="RJ267_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HDV7388539.1"
                     /translation="MSVLVIGADEITPIRAVLHDLGAKKIEHWDARNENRVNRKPIPC
                     DTECIVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLNKEFSCY
                     KG"
     gene            334..1029
                     /locus_tag="RJ267_000663"
     CDS             334..1029
                     /locus_tag="RJ267_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388540.1"
                     /translation="MLFGFDDKQEFIPQIYRYLNNQELMLTFLTQYNASVDSALKIPL
                     LYAKNTKSLKMIFGNFLHNIMHVSFGKIQNINIKLNTYAFYFQKRKSLIFNTKISKNV
                     DLLRLLRIYLYGICFDAQILFSSYVYDKVSFQNNGKNIDQDGDLIIIDKKFAILPLCK
                     EINTHNLEIENEIYELLNLIKENNFEKFYIVCPRNKNFTHFIEIKHFLCDLNKTMLKL
                     VPYKISNQIIRRK"
     gene            1029..1520
                     /gene="fldA"
                     /locus_tag="RJ267_000664"
     CDS             1029..1520
                     /gene="fldA"
                     /locus_tag="RJ267_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HDV7388541.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIASKLGISDVFNISDIDAAKMNSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAQ
                     NLKDAGANLVGEVSTDGYTFEASDAVVDGKFVGLALDNDNQEDQTESRIDAWVEQIKP
                     YFA"
     gene            complement(1565..2095)
                     /locus_tag="RJ267_000665"
     CDS             complement(1565..2095)
                     /locus_tag="RJ267_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7388542.1"
                     /translation="MSKFALILSFFIALFMSACTNATFTQSFIQTSNEGIFIRSQKQQ
                     SFKISFQNPSQLQTTLDRDLALKLKNLGLKEVKENADYEILINLVDMKKHSYAQKITT
                     SARFFYDFDPLESDGEWMVENYYTMQVNLQINSKNHNSQKTSLLARTAYLGNKERCQL
                     SLENKIINQIVSFFYF"
     gene            complement(2101..2811)
                     /locus_tag="RJ267_000666"
     CDS             complement(2101..2811)
                     /locus_tag="RJ267_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDV7388543.1"
                     /translation="MKKLSLILVCSASLFAASNSEISDFYSKSIKAQFPNATVSVSNR
                     QKVGNTGFESVIVSVELNGQKQENILFTKDSLITPDLIDLKTGISYAQEYEMKKFQEA
                     RENFTKNAKAVAQKETMVIALGDKNKPAIYVFSDPECPYCREHLAQIDDELKNYQVNY
                     ILTPVHGKSAFEKSALIYKEAKKAKNDKEKIAILNKYYDANIKNYPKVSDAELKEVFS
                     LYEKYRSLGLSATPTIIK"
     gene            complement(2860..4665)
                     /gene="selB"
                     /locus_tag="RJ267_000667"
     CDS             complement(2860..4665)
                     /gene="selB"
                     /locus_tag="RJ267_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HDV7388544.1"
                     /translation="MKSVIIGTAGHIDHGKTSLIKALNGFEGDSLKEEQERQITINLS
                     FSNLKLKDKNISFIDVPGHKDLVKTMVSGAFGFSVCLFVVDINEGLKEQSLEHLEILK
                     ILDIKNIILVLSKCDLCENIEQKSVEILEELKNLDYPILKVFHTSIKNNQGIEELKNY
                     LYTIENKENDEELIFHYYIDRVFSLKGIGTVVTGSLNEGSITLNEKIICLDTQKELIV
                     KNIQNHDTNLEQIKACNRVALSLNCDYKELKKGYLLSKKGYFKAFKECDALVKAKNLQ
                     NSKMIFCVGSRQIECKINILKKLENDEFFVHFSFDKNVFLSFDEAFILLQNNRVIGGG
                     KVLNPLSEPLKKEQKNKFLMFLKNKDFKAAFSFLKDAHKYGFGLLSSYQRFKLSHQKA
                     LKLAKELNQVFVDEKNLNVYHLQSLEEIKNFIKFILEKNPYAMLSAHSLALRITWASE
                     NFCELGLKEMSNLLDFQNGIYFKKGIDFEKLQEKNNNQMYEILKKQGIKPEAPYNLYD
                     FLELDRKSGDNILKKLTQKGLVVRLSHNLFIEKQALEKLMQECLNLLKNQSLDVQSMK
                     EYFNLSRKYAIAYLEYLDKFPQVSKEAEKRFLTNI"
     gene            complement(4662..5984)
                     /locus_tag="RJ267_000668"
     CDS             complement(4662..5984)
                     /locus_tag="RJ267_000668"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HDV7388545.1"
                     /translation="MNKFRTFPQINTLIEDESLKSYPFYIKAFFCKKVVAKLKENFFQ
                     DEISKDKLLLEIKKEIKTFYRKDLQSVINASGVVIHTNLGRSVIHEELYEACKDIICN
                     YSNVEFDLENGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLNSLCYDKEVIS
                     SRGELVEIGGSFRVPEVIKAAGVKLCEVGTSNKTHLKDYEQAINENTALILKTHKSNF
                     ALMGFHSEVNIKDLHELAKEKELLSYYDLGSGWCENLNEKLIKNEPKIRKLVQECDIL
                     SFSGDKLFGSVQAGIILGKKELIEKLKQNQLLRMLRVDKLTLSFLNESLKAYLQKDYE
                     KIITLKLLNDDLSFIEKKALRVQKELKFQTQLKKSKSLVGGGSMPDKSLDTYILTFQG
                     DALKLQTRFRKENIIGRIENDEFVLDFRTIRENELQKLILTINQMENL"
     gene            6062..7723
                     /locus_tag="RJ267_000669"
     CDS             6062..7723
                     /locus_tag="RJ267_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HDV7388546.1"
                     /translation="MQDFVYIKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYA
                     PEINFYLKNSQDEILEQSKNVLTLYEARASVYDLGLDLEQSKEVQNRLIVADGDAQTV
                     EFLKEHEFKVIALSSAEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAEDLSVVRK
                     DFTRQSGCYNLLNFENLEVLFEFLQSKSPKYHYKTYISYNASVCQYHERRSEHCAKCA
                     EICPTVAILKDDENKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKD
                     KKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLTLLQNSGANLVFYTDFVS
                     RGSNEAIVLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNTLTTRE
                     NFAKRMQEMIKNEDFGSMESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQEN
                     ALKFNASLCTTCGYCELSCAEKDTLKLFRSGMEFRASYFEYQTMAKDELFACIECGKE
                     FATKKAVEKIANLMKPKFGNDENKIKTLYCCADCKAKVMIKAMIN"
     gene            complement(7716..8525)
                     /locus_tag="RJ267_000670"
     CDS             complement(7716..8525)
                     /locus_tag="RJ267_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDV7388547.1"
                     /translation="MKKILFLFCSFFLAFAKPSLEIPKLSKQAKQNFILENVKFNYNG
                     TIYKIFIAKNKNENSNYKYKIIYLLDGNAFFPLFLNLFNTPVKENLLIIGIGYDNNLA
                     FDTQKRTKDYTPTTNLNKQGGGSKEFRNFLITQLIPYINKMYPIDFSHQILFGHSFGG
                     LFAIDTLLYDSKIFSHYFIISPSLWWDNSEFLPNIIKLQTCPKIYIGLGSLETNSSII
                     KGVAKLNAQKLSEKISKETNCKTHFKLFKNETHGSVISKAMLWMKKLLDLN"
     gene            complement(8522..9817)
                     /locus_tag="RJ267_000671"
     CDS             complement(8522..9817)
                     /locus_tag="RJ267_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7388548.1"
                     /translation="MLNNVLPLSFIVGTRFFGLFIVLPVLSLYALKLEGANEFLVGLL
                     VGVYALTQMILQMPFGILSDKIGRKKTMLIGLIIFIIGSLICSFAENIYTMLLGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFAASMVISPLMSAKWGLSSLFD
                     LSAALSLLCIILLYTVVPKENKITHENEKTPFFHLIKQKNLALMNLTNFMQKMLMSIA
                     FLSIPIILVKHLGFASDKLWIVYSASMVAGFIAMGFAGSLGEKKGLAKQILLLGIVFF
                     ILSYLFFAFSNSIDFFIIAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLDTLNLLAIILVILALIWLVALFFLKNPADFKNLYLPLETPL
                     NFSTFGENLGVVDIYKNSKNLVVKFDSKLTSKEELEGKL"
     gene            9984..10586
                     /gene="rdgB"
                     /locus_tag="RJ267_000672"
     CDS             9984..10586
                     /gene="rdgB"
                     /locus_tag="RJ267_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HDV7388549.1"
                     /translation="MKIILATSNKHKVLELKEILKDFEIYAFDEVLMPFEIEENGKTF
                     KENALIKARAVFNALDEKQKKDFIALSDDSGICVDVLEGNPGIYSARFSGKGDDKSNR
                     DKLVNEMIKKGFKQSKAYYVAAIAMVGLMGEFSTHGTMHGKVIDTEKGENGFGYDSLF
                     IPKGFDKTLAQLSVDEKNNISHRFKALELAKIILKILNKG"
     gene            complement(10617..13088)
                     /locus_tag="RJ267_000673"
     CDS             complement(10617..13088)
                     /locus_tag="RJ267_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HDV7388550.1"
                     /translation="MFAKLLKFFISRPKSTFFGTLFICLFLSFFAFKLSVDASAESLL
                     LEDDADLKTFREISKHYKSDNFLLLAFKPYDEKPFSNENLAKLKKLHEELEKAPLVER
                     VFSIINAPLLQSSQNTDLKELLKNIPNIESQDINRTKAQNEILNSPFYKNNIISKDGK
                     VTGLIIYLKPDTVYNNLIEKRDLATDEKEKDQIRLAIKEHQDKQKVITKQSLDTIKSI
                     VRNYEKNKDTLYLGGVSMIADDMIAYIKSDLVLYGVSLVFLLGLALYYFFRSWRFVFL
                     PLFICFISLSAASGVFALLNFQITVISSNYVALVLIITLSVVVHLITHFIESTQNHPK
                     AKVERIVLETLLAKANPSLYAIVTTMIGFFSLILSNIEPIIKLGIMMSIGIGLALIFS
                     YLFLASILVLLKPKNYHKKEFKFNLLAFCAKTALDPKKRRMIYEISVLAIILALIGIS
                     KLRVENSFVNYFKDGSEIKKGLLVIDKNLGGTLPLEVIIRFPNNKNDQNASDTLDSFE
                     SEFENLATQETYWFDSKKTRIAKKVHEFLENKEFVGSVLSLNSLLTLGKNINDGKELD
                     DFALAFLNENLPAKFKQDLLSPFVSIENNELRFSMRIVDSDPNLRRNEFLIDLKKQLN
                     ELVKNDGVEVQITGIMVLYNNMLQSLFSSQFDTLIFVILAIFILFIIVFRDLKFSVAA
                     ILVNVIPLSVVFALMGLLGIPLDMMSITIAAIAIGIGVDDAIHYIYRFREEIKNKSLE
                     EAIMISHLSIGSALYYTTISIVLGFSVMMSSNFIPTIYFGILTVFVMILLLSGSLFLL
                     PSFLITIYSKKTKFPNQHKEHILKQ"
     gene            complement(13088..13657)
                     /locus_tag="RJ267_000674"
     CDS             complement(13088..13657)
                     /locus_tag="RJ267_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HDV7388551.1"
                     /translation="MKKIFLILTLFFNAFALQLDEISSTMQKNIDASLKLLQDNKEDK
                     KQAANGIFKLFDSIIDYKLMAKLSLSKNYSKLTPKEQEKFTTAFETSLKKSFTDKLSL
                     YKDQVLKVKNGELKNEKRYFLTTSMVVDGEEKNIIFKFYNDNNNWLIYDVDVLGVSIV
                     QTYRSQFGDILANQGFDALLQKLESIVIE"
     gene            complement(13667..14335)
                     /locus_tag="RJ267_000675"
     CDS             complement(13667..14335)
                     /locus_tag="RJ267_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HDV7388552.1"
                     /translation="MFFTIFAFAKEQNLDDFEQEYQNYQVNDPLSGYNKAMTSFNVAL
                     YDYGLRPVLKGYNAITPEFIRLGARNFFDNLLAPLRFVSNVLQFKFEEAGEEFKRFTA
                     NTIMGFGGLMDVASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPSNLRDTLTLPA
                     TWYASFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPFLRDAYEQRRN
                     ELSK"
BASE COUNT         4999 a         2014 c         2154 g         5172 t
ORIGIN      
        1 tcacaaagga gaatttatgt cagttttggt tattggtgca gatgaaatca ctcctattag
       61 agctgtttta catgatttag gtgctaaaaa aatagaacac tgggatgcac gtaatgaaaa
      121 tagagttaat cgcaagccga ttccttgtga tacagaatgt atagtaatgt taacaagctt
      181 tttaaatcat aatactatga aaaaaatcaa aaatgaagct aaaaagcgta aaattccatt
      241 agtttgtgca aaaagaagtg taagttgtgt gtattgtgaa tattgtaaaa tttttaatct
      301 taataaagaa ttttcttgct ataaaggtta aagatgttat ttggatttga tgataagcaa
      361 gaatttatac cgcaaattta tcgctattta aacaatcaag agcttatgtt gactttttta
      421 actcaatata atgcgagcgt tgatagtgct ctaaaaattc ctcttttata tgcaaaaaat
      481 accaagagtt taaaaatgat atttggaaat tttttgcata atataatgca tgtttcattt
      541 ggtaagattc aaaatataaa tatcaagctt aatacatacg ctttttactt tcaaaaaaga
      601 aaaagcttga tttttaatac taaaatatct aagaatgtcg atcttttaag acttttaaga
      661 atttatcttt atggcatttg ttttgatgcg caaattttat ttagctccta tgtttatgat
      721 aaggtttctt ttcaaaataa tggaaaaaat atagatcaag atggtgatct tattataata
      781 gataagaaat ttgcaatttt gccactttgc aaagagatta atacacataa tttagaaatt
      841 gaaaatgaaa tttatgaatt attgaattta ataaaagaaa ataattttga aaaattttat
      901 attgtttgtc cgcgtaacaa aaatttcaca cattttattg aaataaaaca ttttttgtgt
      961 gatttaaaca aaactatgtt aaaattagtt ccgtataaaa tatcaaatca aattataagg
     1021 agaaaataat gtcagtagca gtaatctatg gtagtgctat gggaaataca gaaggagcgg
     1081 ctaatacaat tgcttcaaaa cttggaatta gtgatgtttt taatatctca gatattgatg
     1141 cagctaaaat gaattcttac gataaattaa tttgtggaac ttcaacttgg ggaagtggtg
     1201 atttacaaga tgattgggat ggttttgatt tttcagggct tagtcttggt ggaaaaactg
     1261 tagctgtatt tggtatgggt gatagtgaaa gttattctga cactttttgt ggcggcatgg
     1321 gtaaattagc tcaaaattta aaagatgcag gtgcaaattt ggtaggagaa gtttcaactg
     1381 atggttatac atttgaagca agcgatgcgg ttgtagatgg taaatttgtt ggacttgctc
     1441 ttgacaatga taatcaagaa gatcaaactg aatcaagaat tgatgcttgg gtagaacaaa
     1501 tcaaacctta ttttgcttaa taattcttaa aatcaagagt ttttatactc ttgattgtct
     1561 tttcttaaaa ataaaaaaaa ctcactattt gatttataat tttattttct aaagataatt
     1621 gacagcgttc tttatttcca agataagctg ttcttgcaag aagacttgtt ttttgagaat
     1681 tgtgattttt agagttgatt tgtaaattaa cttgcatagt atagtagttt tctaccatcc
     1741 attctccatc gctttccaaa ggatcaaaat cataaaaaaa tcttgctgaa gttgtgattt
     1801 tttgagcata agaatgcttt ttcatatcta caagattgat taaaatttca taatctgcat
     1861 tctcttttac ttcttttaag cctaaatttt taagttttaa agccaaatct ctatctagag
     1921 tagtttgaag ttgactggga ttttgaaagg aaattttaaa actttgttgt ttttgtgatc
     1981 tgataaaaat gccttcattg cttgtttgaa taaagctttg tgtgaaagtt gcattggtgc
     2041 aagcactcat aaagagtgct ataaaaaagc ttaaaattaa agcaaattta gacattaggt
     2101 ttatttaata atagttggag tagcgctaag acctaatgag cgatattttt catataagga
     2161 aaaaacttct tttaattctg catcacttac ttttggataa tttttgatat ttgcatcata
     2221 gtatttgttt aaaattgcga ttttttcttt atcatttttt gctttttttg cttccttgta
     2281 gattagagcg gatttttcaa aagcagattt tccatgtact ggagttaaaa tataattaac
     2341 ttgatagttt ttaagttcat catcaatttg agctaaatgt tctctacaat aagggcattc
     2401 aggatctgaa aaaacataaa ttgcaggttt atttttatct cccaaagcta ttaccatggt
     2461 ttctttttgt gctacagctt tagcattttt tgtaaaattt tctcttgctt cttgaaattt
     2521 tttcatttca tattcttgag cataagaaat tcccgttttc aagtcgataa gatcaggggt
     2581 aataagacta tcttttgtaa aaagaatgtt ttcttgtttt tgtccattta attcaacgct
     2641 tacaataaca ctttcaaaac ccgtattacc aaccttttga cgatttgata cactaacggt
     2701 agcatttgga aattgtgctt taatgctttt tgaataaaaa tcactaattt ctgaattact
     2761 tgcagcaaac aaagatgctg aacagacaag aattaaactt aattttttca tagtttataa
     2821 atcctttaaa taaattatgt ttaattctat aatgattttc taaatgtttg ttaaaaatct
     2881 tttttcagct tctttactta cttgaggaaa tttgtctaag tattctaaat aagcaatagc
     2941 atattttctt gaaagattaa aatattcttt catactttgc acatcaagac tttgattttt
     3001 taataaattt aaacattctt gcataagttt ttcaagagct tgtttttcta taaaaagatt
     3061 gtgtgaaagt cttacaacca agcctttttg ggtaagtttt ttgagtatat tatctccgct
     3121 ttttctatca agttctaaaa aatcataaag attataagga gcttcgggtt taataccttg
     3181 tttttttaaa atttcataca tttggttatt gtttttttct tgaagttttt caaaatctat
     3241 acctttttta aaataaattc cattttgaaa atccaataaa tttgacattt ctttaagccc
     3301 aagttcgcaa aaattttcac ttgcccaagt aatccttaaa gctaaagaat gtgctgaaag
     3361 catggcataa ggattttttt caagtatgaa tttgatgaaa tttttaattt cttctaggct
     3421 ttgtaaatga tatacattaa gatttttttc atcaacaaat acttgattta attcttttgc
     3481 taatttcaat gctttttgat gagagagttt aaatctctga tagcttgaaa gcaaaccaaa
     3541 gccgtattta tgtgcgtctt ttaagaaaga aaaagctgct ttaaaatctt tatttttcaa
     3601 aaacattaaa aatttatttt tttgttcttt ttttaaaggt tcgcttaaag gatttaaaac
     3661 cttaccaccg cctataacac gattattttg taataaaata aaagcctcat caaaacttaa
     3721 aaatacattt ttatcaaaac taaaatgcac aaaaaattca tcattttcta gtttttttaa
     3781 tatatttatt ttgcattcta tttgtcttga acctacacaa aaaatcattt tgctattttg
     3841 taaatttttt gctttaacta aagcatcaca ttctttaaag gctttaaaat aacctttttt
     3901 acttagcaaa taaccttttt tcaactcttt ataatcacaa tttaaactta aagccacacg
     3961 gttacaagct ttgatttgct ctaaattagt atcgtggttt tgtatatttt taacaatgag
     4021 ttctttttga gtgtctaaac agatgatttt ttcatttaaa gtgatgcttc cttcattaag
     4081 actgcctgta acgacagttc ctatgccttt tagagaaaaa actctatcga tataataatg
     4141 aaaaatcagt tcttcatcgt tttctttgtt ttctatggta taaagataat tttttaattc
     4201 ttctatgcct tgattatttt ttatactggt gtgaaatact tttaaaatgg gataatctaa
     4261 attttttaac tcttctaaaa tttctacact tttttgctct atattttcac aaagatcaca
     4321 tttgctaagc actaaaatga tatttttaat atcaagaatt tttaaaattt ctaaatgttc
     4381 taaactttgt tcttttaaac cttcgttaat atctacgaca aataaacaaa cactaaagcc
     4441 aaaagctcca cttaccatag ttttaaccaa atctttatgt cctggaacat cgataaaaga
     4501 aatgttttta tcttttaatt taagatttga aaaacttaaa ttaatggtga tttgtctttc
     4561 ttgttcttct tttaaactat cgccttcaaa accatttaaa gctttaatga gtgaagtttt
     4621 tccatgatca atatgtcctg cggttcctat aataacagat ttcataagtt ttccatttga
     4681 ttgattgtaa gaataagttt ttgaagttca ttttctcgta tagttctaaa atcaagaaca
     4741 aattcatcat tttcaatgcg tcctatgata ttttcttttc taaatcgagt ttgtagtttt
     4801 aaagcatctc cttgaaaagt tagtatataa gtatctaaac ttttatcagg catagaacct
     4861 cctcctacta aacttttgct ttttttaagc tgggtttgaa attttaattc tttttgcact
     4921 cttaaagctt ttttctctat aaaggataag tcatcattta aaagttttaa ggtaataatt
     4981 ttttcataat ctttttgtaa ataagctttt aagctttcgt ttaaaaaaga tagggttaat
     5041 ttatccactc ttagcattct taaaagttga ttttgtttaa gtttttctat gagttctttt
     5101 tttccaagta taatgcccgc ttgtacgctg ccaaaaagtt tatctccgct aaaacttaaa
     5161 atatcacatt cttgcacgag ttttctgatt ttaggttcat tcttaatcag cttttcattt
     5221 aaattttcac accagccaga acctagatca taataactca aaagctcttt ttcttttgct
     5281 agttcatgta gatcttttat atttacttca ctgtgaaaac ccataagagc gaaattagac
     5341 ttgtgggttt ttaaaattag agcggtattt tcattgatag cttgttcata gtcttttaag
     5401 tgtgttttat tactagttcc aacttcgcaa agctttacac ctgcagcttt tatcacttca
     5461 ggcacacgaa aacttccgcc aatttctaca agttctcctc ttgagcttat gacttcttta
     5521 tcataacaaa gagaattaag cactaaaaaa actgccgcag cgttgttatt gaccactaaa
     5581 gcatcttcac attcaaaaag cattttaagt ttttctagta ccaaagcata gcgagagcct
     5641 ctttttccat tttctaaatc aaactctaca ttagaataat tacaaatgat atctttacac
     5701 gcttcataaa gttcttcatg gattacactt ctaccaaggt ttgtgtgtat aaccactccg
     5761 cttgcattaa tcacactttg taaatctttg cggtaaaaag ttttgatttc ttttttgatt
     5821 tctaaaagta gtttatcttt agaaatttca tcttggaaaa aattttcttt tagttttgcg
     5881 acaacttttt tacaaaaaaa tgctttgata taaaaaggat aggattttaa actctcatct
     5941 tcaataagag tgttaatttg tggaaaagtt ctaaatttgt tcatcttaag ccttaagaaa
     6001 atatttggtt attttaacat agaatttata aaatgatgtt ttaaagagat taaggaagac
     6061 aatgcaagat tttgtttata taaaaaatga tgttttaatc cctttgcctg atgctattga
     6121 aattttagat caggcaaatg ataaagaagc attaatttgc aatgataaaa atcaaaaagc
     6181 acaaatttat gcccctgaga ttaattttta tcttaaaaat tctcaagatg aaattttaga
     6241 gcaaagtaaa aatgttttaa cgctttatga agcaagagct agcgtttatg atttggggct
     6301 tgatttagaa caaagcaaag aagtgcaaaa tcgtttgatt gtcgcagatg gtgacgctca
     6361 aactgtagag tttttaaaag aacatgaatt taaggttatt gctttaagca gtgcagaaat
     6421 tttagctgtt tttggaagtg taggggagct ttgtgctgtg gttaaaaatc aaggcgaaga
     6481 agtggaaata gattttgatt ttttactttt taaagctgag gatttaagcg ttgtgcgtaa
     6541 agattttaca agacaaagtg gatgttataa tcttttaaat tttgaaaatc ttgaagtatt
     6601 gtttgagttt ttgcaaagca aaagtccaaa atatcattat aaaacttata ttagctataa
     6661 tgctagtgtg tgtcaatacc acgaaagacg cagtgagcat tgtgcaaaat gtgctgaaat
     6721 ttgtcctact gtggcgattt taaaagatga tgaaaacaaa catttggaat tttctcaagt
     6781 ggattgtttg ggttgtggag gatgtattag cgtgtgtcct agcggatcgc ttgattatgc
     6841 tcctatgcca agagaaagtt tctttaccct ttgtgagttt tataaagata aaaaaatttt
     6901 aatcattcct aaaaaaatgt ctttagaaaa tttaaatctt gctttaccaa aagatgtttt
     6961 accctttatg atagagggtg aaaaatggct ttcttctatg cattttttaa cgcttttgca
     7021 aaatagtgga gcaaatttgg ttttttatac ggattttgta tctcgtggta gcaacgaggc
     7081 tattgtactt ttaaatactt tttttgagag aaaatttcaa aaaaaagcta tttttgttgc
     7141 taaagatgaa aaagaattgc aaaatgtttt aaaagagcaa gaattcatac aagatttaaa
     7201 atatgatttt cataataaca ccttaactac aagagaaaat tttgccaaaa gaatgcagga
     7261 aatgataaaa aatgaagatt ttggcagtat ggaaagtggc gaatggttgc gttatggtaa
     7321 ggtagaaatc aatcctaaca cctgtacgct ttgtctttct tgtgtgggtg cctgtaatgt
     7381 aggagcttta atcgctgata aacaagaaaa tgctttgaaa tttaatgctt ctctttgtac
     7441 gacttgtggg tattgtgagt taagttgtgc tgaaaaagat actttaaaat tatttcgtag
     7501 tggaatggag tttagagctt cttattttga atatcaaacc atggcaaaag atgagctttt
     7561 tgcctgtata gaatgtggta aagaatttgc gaccaaaaaa gccgtagaaa aaatagccaa
     7621 tttaatgaaa cctaaatttg gtaatgatga gaataaaatc aaaacacttt attgctgtgc
     7681 agattgcaag gcaaaagtga tgataaaagc aatgattaat taagatcaag aagctttttc
     7741 atccacagca tagctttaga tatgacactt ccatgagttt catttttaaa aagtttaaaa
     7801 tgagttttac aattagtttc tttggatatt ttttcgctaa gtttttgagc attgagctta
     7861 gctacacctt tgataatact tgaatttgtt tccaatgaac ctaatccgat gtaaatttta
     7921 gggcaagttt gtaattttat gatattaggt aaaaactcac tattatccca ccataaagaa
     7981 ggtgaaataa taaaataatg actaaaaatc ttactatcat aaagaagtgt atcaatggca
     8041 aaaagtcctc caaaagaatg tccaaagaga atttgatggc taaaatcaat aggatacatt
     8101 ttgttgatat aagggatgag ttgggttatt aagaaatttc taaattcttt actacctcca
     8161 ccttgtttat ttaaatttgt tgtaggcgta taatctttag tgcgtttttg tgtatcaaaa
     8221 gctaaattat tatcataacc tattccaata attaaaagat tttctttgac aggagtgttg
     8281 aaaagattta aaaaaagagg aaaaaaggca tttccatcga gtaaataaat gattttatat
     8341 ttataatttg agttttcatt cttgttttta gctataaaaa ttttatatat tgtgccatta
     8401 taattaaatt tgacattttc taaaataaag ttttgttttg cttgttttga gagcttgggt
     8461 atctctagac ttggttttgc aaaagctaga aaaaaagaac agaataaaaa taatattttt
     8521 ttcataattt gccttctaat tcttctttac ttgtaagttt gctatcaaat ttaacaacaa
     8581 gatttttaga gtttttataa atatctacaa cccctaaatt ttcaccaaaa gtactgaaat
     8641 ttaaaggcgt ttctaaaggt agataaaggt ttttaaaatc agctggattt tttaagaaaa
     8701 ataatgccac aagccaaatt agagctaaaa ttactaaaat aatagctaaa agatttaagg
     8761 tatctagatg taaaaatatc cctccgataa taccacctat aaaacttcca ccatatccaa
     8821 aagcattaaa taaccctaat gctgcacctt tttcatgaac tttacaaaat tttgatgcac
     8881 aactttgcat aataggttcg tgtaaattaa aacctataaa aaaaatcaca actgctatga
     8941 taaaaaaatc aatagaatta ctaaaagcaa aaaaaagata agaaagtatg aaaaaaacaa
     9001 ttcctaagag taaaatttgt ttagctaaac cttttttttc gcctaaactt ccagcaaagc
     9061 ccatagcgat aaaacctgct accatagaag cgctataaac aatccaaagt ttatcagaag
     9121 caaagcctaa atgttttact agaataatag gaatacttaa aaatgctata ctcataagca
     9181 ttttttgcat gaaattagta agattcataa gggctaaatt tttttgttta ataagatgaa
     9241 aaaaaggagt tttttcattt tcatgagtga ttttattttc tttaggtaca acggtataaa
     9301 gtaaaattat acataaaaga gacaaagccg cactaagatc aaaaaggcta gataaacccc
     9361 attttgcact cattaaagga gaaattacca tagaagctgc aaaactaagt cctataaaag
     9421 aacccattac cgccatggct ttaccacgat tttcttctgt gataaaatca cttatcattg
     9481 ccgtagctac tgctccaata gctcctgcac cttggagcat tctccctaaa agcatggtgt
     9541 aaatattttc tgcaaaagag cagattaaag agcctattat aaaaataatc agtccaatga
     9601 gcatggtttt tttacgacca attttatcac ttaaaatccc aaaaggcatt tgtaaaatca
     9661 tttgggttaa ggcgtaaaca ccaactaaaa gtcccactaa aaattcatta gcaccttcaa
     9721 gttttaaagc ataaaggctt aaaactggca aaactataaa aagcccaaaa aatcttgttc
     9781 caactatgaa agataagggt aagacattat ttagcattat caatttccta ttaaatttga
     9841 aatttaaatt aggataattt tactatgaaa tggattaagc attgattaac atcgttttac
     9901 cattttgtat ttaaaagcta cgcacaagga taaattttat aaaatcatat ttttgttttt
     9961 gatattattt tggagctttt gttatgaaga ttatcctagc tacgagcaat aaacataaag
    10021 ttttagaact taaagaaatt ttaaaagatt ttgaaattta tgcttttgat gaagttttaa
    10081 tgccttttga gattgaagaa aatggaaaaa cttttaaaga aaacgccttg attaaagcaa
    10141 gagcggtttt taatgctttg gatgaaaagc aaaaaaaaga ttttatcgct ttaagtgatg
    10201 atagtggcat ttgtgtagat gttttagaag gaaatccagg aatttattct gctcgattta
    10261 gcggtaaggg cgatgataaa agtaaccgtg ataaacttgt caatgaaatg ataaaaaaag
    10321 gttttaaaca aagtaaggca tattatgttg ctgctattgc tatggtaggt ttgatggggg
    10381 aatttagtac gcatggaacc atgcatggaa aagtaataga tacagaaaaa ggtgaaaatg
    10441 gttttggtta tgatagcctt tttattccaa agggttttga taaaacctta gcccagctta
    10501 gcgtggatga gaagaataat atctctcatc gttttaaagc tttagagctt gcaaaaatca
    10561 ttttaaagat tttaaataaa ggataaaaat gaaaaatttt ttaaaatata tagctattat
    10621 tgttttaata tatgctcttt atgttggttt ggaaacttgg ttttcttaga ataaatagtg
    10681 attaaaaagc ttggtaataa gaacaaactt ccacttaaaa gcaaaatcat tacaaaaacg
    10741 gttaaaattc caaaataaat tgttggaatg aaattactac tcatcataac actaaaacct
    10801 aaaactatgc taatggtagt ataataaagt gccgaaccta tactaaggtg agaaatcata
    10861 atggcttctt ctaggctttt gtttttaatt tcttctctaa aacgataaat ataatgtata
    10921 gcatcatcaa cgcctatgcc tatagcaata gcagctatag taatactcat catatccaaa
    10981 ggaataccta aaagccccat aagagcaaaa accacactta aaggaataac atttaccaat
    11041 atagccgcaa ctgaaaattt taaatctcta aaaacaatga taaaaagtat aaaaatagct
    11101 aaaattacaa atataagagt atcaaattgc gatgaaaaaa gactttggag catattatta
    11161 taaagcacca ttatgcctgt gatttgaact tctactccat cattttttac aagctcgttg
    11221 agctgttttt taagatctat taaaaactca ttacgtctta aattcggatc agaatcaaca
    11281 atacgcatgc taaatcttaa ctcgttattt tctatactta caaaaggtga aagcaagtct
    11341 tgtttaaatt tggcaggcaa attttcattt aaaaacgcaa gggcaaaatc atccaactct
    11401 tttccatcgt taatattttt ccctagggtt aaaagactat taagacttaa aaccgaacct
    11461 acaaattctt tgttttctaa aaattcatga actttttttg caatgcgtgt ttttttagag
    11521 tcaaaccaat aagtttcttg tgtggctaaa ttttcaaatt cactttcaaa actatcaaga
    11581 gtatcgcttg cattttgatc gtttttatta tttggaaaac gaatgatcac ttctaaaggt
    11641 aaggttccac ctagattttt atcaataacc aaaagtcctt ttttgatttc actaccatct
    11701 ttgaaataat tgacaaaaga attttcaact ctgagttttg aaatgcctat taaagctaag
    11761 attatagcaa gaactgaaat ttcataaatc atgcgacgct ttttaggatc aagagcggtt
    11821 ttggcgcaaa aggctaaaag attaaattta aactcttttt tatgataatt ttttggtttt
    11881 aaaagaacta agatacttgc taaaaacaaa taactaaaga taagagctaa acctatacct
    11941 atactcatca taatgccaag ttttatgata ggttcgatat ttgataggat taaagaaaaa
    12001 aatcctatca tcgttgtaac aatggcataa aggctaggat ttgctttcgc tagtaaggtt
    12061 tcaagcacta tgcgctcaac tttagctttg ggatgatttt gggtgctttc gataaaatgc
    12121 gtgatcaaat gaacaactac acttaaggtg ataattaaaa ccaaagcaac gtaatttgat
    12181 gaaataaccg tgatttgaaa atttaaaagc gcaaaaactc cactagccgc acttaagctt
    12241 ataaaacaaa taaaaagagg taaaaaaaca aagcgccatg agcggaaaaa ataataaagt
    12301 gcaagtccta gtaaaaatac aagagaaaca ccataaagca caagatcaga ttttatataa
    12361 gctatcatat catcagcgat catgcttacg ccaccaaggt agagcgtatc tttatttttt
    12421 tcataatttc gaactatgct tttaatagta tctagacttt gtttcgtgat aactttttgc
    12481 ttgtcttgat gttcttttat ggcaagacga atttgatctt tttctttttc atcggtagca
    12541 agatcgcgtt tttctataag attattataa actgtatcag gctttaagta aataataagc
    12601 cctgttactt ttccatcttt tgagatgata ttatttttat aaaagggact atttaaaatt
    12661 tcattttggg cttttgtgcg gtttatatct tggctttcta tatttgggat attttttaaa
    12721 agttctttta aatccgtatt ttgcgaactt tgaagcaaag gggcattgat gatactaaaa
    12781 acgcgttcta ctaaaggggc tttttctaat tcttcatgaa gtttttttaa tttggctaaa
    12841 ttttcatttg aaaaaggttt ttcatcatag ggtttgaagg ctaaaagtaa aaaattatca
    12901 cttttataat gttttgaaat ttctctaaaa gtttttaaat ctgcatcatc ttctaaaagt
    12961 aaactttcag cacttgcatc tacgctaagc ttaaaagcaa aaaagcttaa aaacaggcat
    13021 ataaacaacg ttccaaaaaa agtacttttt ggacgagaaa taaaaaactt taaaagcttt
    13081 gcaaacatta ttctatgaca atactttcaa gtttttgaag tagggcatca aagccttggt
    13141 tggctaaaat atctccaaat tgtgatctat aagtttgtac tatactcaca cctaaaacat
    13201 ctacatcata aataagccag ttgttattat cattgtaaaa tttgaaaatg atattttttt
    13261 cttccccatc tactaccata gaagtggtta aaaaatagcg tttttcattt tttaactcac
    13321 catttttgac ctttaaaacc tgatctttat aaagactgag tttatcggta aaactttttt
    13381 taagacttgt ttcaaaggct gtggtaaatt tttcttgttc ttttggggtt aatttagaat
    13441 aatttttcga aagactgagt ttcgccatga gtttataatc tattatgcta tcaaaaagtt
    13501 taaaaattcc attagcagct tgttttttgt cttctttgtt atcttgtaaa agttttaagc
    13561 ttgcatcaat gtttttttgc atagtgctag aaatttcatc tagttgtaag gcaaaagcat
    13621 taaaaaataa agtcaagatt aaaaatattt ttttcattaa tttcctttat ttgctaagtt
    13681 cattgcgtct ttgctcgtaa gcatcacgca agaatggata taaattaggc gtgttgtgat
    13741 aaatttcatc aatttcatca agcctaaaac taagttcatt accaaatcca taagcactta
    13801 tagctatact tgcccaagta ggatcaatgt aagcggtaaa acttgcatac caagttgcag
    13861 gtaaagtaag agtgtctcta agattgctag gaccaagtat aggtaagaca atatgaaaac
    13921 cgcttcctac accccagtga gccaaaacgg ttcctaagtc cgcgggatgt tttttaagac
    13981 ccatttttga tgccacatcc ataagtccac caaaacccat gatggtattg gcggtaaatc
    14041 ttttaaattc ttctccagct tcttcaaatt taaactgcaa aacattgctt acaaaacgca
    14101 aaggagcaag taaattatca aagaaatttc ttgcccctaa tcttataaat tcaggagtga
    14161 tagcgttata gcccttaaga acgggacgca aaccataatc atacaaagcc acattaaagc
    14221 ttgtcatagc tttgttatat cctgaaagtg gatcgtttac ttgatagttt tggtattctt
    14281 gttcaaaatc atctaaattt tgttctttag caaaagcaaa aatagtaaaa aaaattaaa
//
LOCUS       DAPIWQ010000032        13950 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.032, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000032 DAPIWQ010000000
VERSION     DAPIWQ010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13950
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.032"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            54..1420
                     /locus_tag="RJ267_000676"
                     /pseudo
     CDS             54..1420
                     /locus_tag="RJ267_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006639.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            1562..2314
                     /gene="peb3"
                     /locus_tag="RJ267_000677"
     CDS             1562..2314
                     /gene="peb3"
                     /locus_tag="RJ267_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family glycoprotein adhesin PEB3"
                     /protein_id="HDV7388553.1"
                     /translation="MKKIITLFGACALAFSMANADVNLYGPGGPHTALKDIANKYSEK
                     TGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA
                     IILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNF
                     RNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVI
                     AKEGASKETQDFIAYLSSKEAKEIFKKYGWRE"
     gene            2411..3505
                     /locus_tag="RJ267_000678"
     CDS             2411..3505
                     /locus_tag="RJ267_000678"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HDV7388554.1"
                     /translation="MKTFLVCALEPSANLHLKEVLKAYKKDFGEFELHGIYDESLCKE
                     FDLNSKPLYSSHEFSAMGFIEVLPLIFKAKKAIKELANLSFTQKINGILCIDSPAFNI
                     PFAKALKKAGSKIPRIYYILPQVWAWKKGRIPIIESHFDILASILPFDNQFFNKSTYI
                     GHPLLDEIKEFKNQEDINHTFSKKDDEKTIAFLPGSRRSEIRRLMPIFKELSQKFKGK
                     KILCVPSFNLEKLEVYGDISEFKIESNTPKVLKKADFAFICSGTATLEAALVGTPFVL
                     AYKAKAIDIFIAKLFVKLKHIGLANIFCDFAGKEALNPEFLQDKVNVLNLYEAYNKYD
                     YKAFFAKVDFLKEYLQFGSAKNLAKILNEI"
     gene            3517..4002
                     /gene="greA"
                     /locus_tag="RJ267_000679"
     CDS             3517..4002
                     /gene="greA"
                     /locus_tag="RJ267_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HDV7388555.1"
                     /translation="MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKES
                     KYTLVGICEGNLDKGYISIASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINYEPLK
                     F"
     gene            4153..4770
                     /locus_tag="RJ267_000680"
     CDS             4153..4770
                     /locus_tag="RJ267_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HDV7388556.1"
                     /translation="MLIGEISATHEFAKPYIELLEELALKIEIIYLEGNHDFNLSCFF
                     KRVKIFNLQEQPIKLNLHTSKGNNLVLNSAFIKLAHGDIFLPPLLQFTLKTLRNHYLL
                     VFLNFLNIITRNFISNKILQNQNKKNLFYQIKDFENLAKKRYEKYENLGFWVCEGHYH
                     QNHQINKENIKYLNLASFAYERSFFVVEYQQEIKFREQKLRGQNV"
     gene            4763..5719
                     /locus_tag="RJ267_000681"
     CDS             4763..5719
                     /locus_tag="RJ267_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HDV7388557.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYAPKTDIDFGKIEKFTGTALILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGI
                     NKLEELSQIYGESLNDTLKIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIVFNSSLSN
                     EFMNEKGVQEAGGEGYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            5723..8032
                     /locus_tag="RJ267_000682"
     CDS             5723..8032
                     /locus_tag="RJ267_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDV7388558.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPVVATDSNEKSIPQAELEAPKQEIATPE
                     PEVDVNQLSDSEVEAEIERLLKVRKAEDQARRAQKKQTTNAAPKPTNNTANKPTESGE
                     KKVPASGSNASSMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFL
                     EELNQVVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGE
                     ETELDKSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVV
                     EITDDGKGLDPNGLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGR
                     GVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLA
                     SVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVA
                     ESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKE
                     IKVDIKAQLESSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEA
                     LNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRG
                     VEVGMTEYITKPYSPEYLENVVRKNLKLG"
     gene            8037..8558
                     /locus_tag="RJ267_000683"
     CDS             8037..8558
                     /locus_tag="RJ267_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-binding chemotaxis protein CheW"
                     /protein_id="HDV7388559.1"
                     /translation="MSNEKLEQILQKQQTQMAGPDVDQREDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFHLGSSKMTPQTRYI
                     VLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            8558..9181
                     /gene="serB"
                     /locus_tag="RJ267_000684"
     CDS             8558..9181
                     /gene="serB"
                     /locus_tag="RJ267_000684"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HDV7388560.1"
                     /translation="MIKLCVFDFDATLMDGETIDILATAHGKGNQTSEITRHAMTGEL
                     DFFESLQKRVSFLKGMSYKKVLELSSTLPLMRGAHELIQYLKSKNIQIVIFSGGFHEG
                     INPAMQKLGINLGFANYLHHKNDILTGLVGGEMMFSNSKGLMLQRLKSFLNLKTDEVM
                     CVGDGANDLAMFNESGLKIAFCAKEILRSQADICIDIKDLKEIIKVI"
     gene            9181..10158
                     /locus_tag="RJ267_000685"
     CDS             9181..10158
                     /locus_tag="RJ267_000685"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HDV7388561.1"
                     /translation="MKNFSLWCDFIENSFLDNEFLNLLSHGINGATSNPAIFKNAILN
                     SPIYKDKILKLKEKKTKDIYEELAISDIQKAADKLAPLFYQKNDGFISIEIDPRLHDN
                     TTLSLGEAKRLYSAIGKENIMIKIPATKASYEVMYELMKNGISVNATLIFSLEQSQKC
                     FEALNAGLVEFRKNNIALKEQNTRTPQAVISIFVSRFDRLLNPKAKEQNRIGILNANL
                     AYNNIYSKNEPNIRALFASTGVKGDDLPKDYYIKELLFENSVNTAPLDAIEAFKGKMH
                     FKKPLMNFEIYTELNQIISQSEREKACNDLLSDGLEQFCIAFEDILKAL"
     gene            complement(10159..10581)
                     /locus_tag="RJ267_000686"
     CDS             complement(10159..10581)
                     /locus_tag="RJ267_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HDV7388562.1"
                     /translation="MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFCELK
                     SLARIPKSFKNLVRRSKKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKE
                     FDEEWARSVADIILDEKFFENIPSKILKLSKNKMIKIR"
     gene            complement(10578..13847)
                     /gene="carB"
                     /locus_tag="RJ267_000687"
     CDS             complement(10578..13847)
                     /gene="carB"
                     /locus_tag="RJ267_000687"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HDV7388563.1"
                     /translation="MPKRTDIKSILLIGSGPIVIGQACEFDYSGTQAAKTLKELGYRV
                     VLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAYNYDEALKAVDEI
                     DFPLMIRASYTLGGAGSGVVYNMDEFKELTNTALALSPIHEILIEESLLGWKEYEMEV
                     IRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAINPKNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPRFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERSLSGFDRVKFEDRNDLVFKIRNANEKRLLYVAQAFREGFSVEELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILNNKALLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYVRMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNDAKDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDMGIKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAELRLYMQ
                     EAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHNNELYMIEVNPRASRTIPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYT
                     KKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKISEGRPNVEDKLKNGEIHLVIN
                     TSDSHSFKGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQSKSCLDVKSLQEWLK
                     S"
BASE COUNT         4859 a         2162 c         2373 g         4556 t
ORIGIN      
        1 gattaacatt atttaaacta taaaaatata aagttagtaa ggatggttta aatatgtttg
       61 attttttcaa acctaaggca aaagctatta aatttcctct ttaggaaatt ttacctagat
      121 attacaaaat gagaacttgg agtttaagtg gggtttttat aggatatatg ggatattatc
      181 ttgtgcgaaa taatatcact ctttcaactc catttataca aaatcaactt aatctcagta
      241 aatcagacat cggaacaatc acaggctcaa tgcttatagc ttacgggatt agcaagggtg
      301 caatgagcgt tataagcgac aaagctgatc ctaaaaaatc atggctttag gtcttatttt
      361 atgtgctctt gtaaatgttt tacttggttt ttcaaattct ttttacgctt atgtaggttt
      421 tgttatcgcg cttggggttt ttcaaggtat gggggtaggt ccttctttta tcactcttgc
      481 aaactggtat cctaaaaaag agcggggaat ttacacggcc gtttggaata tctcacataa
      541 tataggaggc gggatagttg ctcctatagt ttcgctttca ggttttgctt tggcagcatt
      601 attgggtgtg agtatggcaa attttaacga aacatattgg cacatgaatc atttttatac
      661 tcctgctgct tgtgcagtta tcattagtct ttatgcgctt tatgcagtta aaggaaacta
      721 aaaatgaagg tttggttgat attactgaaa tcaatgaaat gcgagggatt aaaacagaag
      781 aaatcaaagc tatagaaact ccaaatttaa gcagttttga aattttttat cattatgtac
      841 ttaaaaacaa aaatgcttgg tatgtggctt ggatggatac ttttgtttat atggtgcgtt
      901 ttgggcttat ttcttggctt cctatttact tgctagaaac aaaaggcttt aataaagaac
      961 aaataggtat tgccttttgg ctttttgaat gggctgctat accttctact ttacttgcag
     1021 gatatatttc agataaaatt tttaaaggct atagaatgcc tcctgctata ggcgccatgg
     1081 tgattatttt ctttatgatt attggatatt ttacttcaaa taatctttat atggttattt
     1141 tctttgcagc tatggcgggg tgtttagtct atataccaca atttttagca agtatgcaaa
     1201 ctatggaagt cgttcctgct tttgcagtag gatcttgtgt aggacttcat ggctttatga
     1261 gttatgtagt cggcgcttca cttggaacaa aagcataggt tgggctgtgg attactatgg
     1321 tagttggaat gctggtctta tcatgctcct tagtgcttgt attctttgta tactttgttc
     1381 tactttatgt cattttagcg ctaaaaagaa gcatcaataa caattttaac ttttgcttgc
     1441 aaaaatacca agcaaaagtt agattttaat aatatttttg ttacattata actatttatt
     1501 aacatacaat ttctaaaatc ttaccttcaa tcaataaaaa tttatcataa aaggaaatac
     1561 tatgaaaaaa attattactt tatttggtgc atgtgcctta gcttttagta tggcaaatgc
     1621 agatgtaaac ctttacggac caggtggccc acacacggcc ttaaaagata tagcaaacaa
     1681 atatagcgaa aaaacaggcg ttaaagtaaa tgtaaatttt ggccctcaag cgacttggtt
     1741 tgaaaaggct aaaaaagatg cagatatttt atttggcgct tcagatcaat cggctttagc
     1801 tatagcgagt gattttggaa aagattttaa tgtgagtaaa atcaagcctt tatattttag
     1861 agaagccatc atacttactc aaaaaggcaa tcctttaaaa atcaaaggtt taaaagattt
     1921 ggctaataaa aaagtaagaa tcgttgtgcc tgaaggtgct ggaaagagca atacttctgg
     1981 aactggagtt tgggaagata tgataggtag aactcaagat ataaaaacca tacaaaattt
     2041 tagaaacaat atcgtggcct ttgttccaaa tagtggaagt gcaagaaagc ttttcgcaca
     2101 agatcaagcc gatgcttgga tcacttggat tgactggtca aaaagcaatc ctgacatagg
     2161 aactgccgta gctatagaaa aagatttggt tgtttataga acttttaatg tgatagctaa
     2221 agaaggtgcg agcaaagaaa cacaagattt tattgcttat ttaagttcta aggaagctaa
     2281 agaaattttt aaaaaatacg gctggagaga ataaaccttc atacacgctt tttagcgtgt
     2341 attcttgcat aacttctttt aattaagcca aaataagata aaatgtttaa aatattgata
     2401 aggaaatttt ttgaaaacct ttttagtttg tgctttagag ccttcagcaa atttgcattt
     2461 aaaagaagtt ttaaaagctt ataaaaaaga ttttggtgaa tttgaacttc atgggattta
     2521 tgatgagagt ttatgcaaag aatttgattt aaattctaaa ccactttata gctcacatga
     2581 atttagtgct atgggtttta tagaagtttt acctttgatt ttcaaagcaa aaaaagctat
     2641 aaaagaactt gcaaatttaa gctttactca aaaaataaat gggattttat gtatagattc
     2701 acccgctttt aacatacctt ttgctaaagc tttaaaaaaa gcaggcagta aaattccacg
     2761 catttattat atcttgcctc aagtttgggc gtggaaaaaa ggtcgcatac ctatcataga
     2821 aagtcatttt gatattttag cttctatttt gccctttgat aatcaatttt ttaacaaaag
     2881 cacctatata ggccatccgc ttttagatga gataaaagaa tttaaaaatc aagaagacat
     2941 taatcataca ttttcaaaaa aagatgatga aaaaactata gcctttttac caggttcaag
     3001 gcgtagtgaa attaggcgtt taatgcctat ttttaaagaa ctttctcaaa aatttaaggg
     3061 taaaaaaatt ctttgcgttc cctcatttaa tcttgaaaaa ttagaagttt atggtgatat
     3121 tagcgaattt aagatagaaa gtaacactcc aaaagtgctt aaaaaagctg attttgcctt
     3181 tatttgtagt ggaacagcta ctttagaagc agctttagtg ggaactcctt ttgttcttgc
     3241 ttataaggca aaggctatcg atatttttat cgcaaaactt tttgtaaaat taaaacatat
     3301 aggacttgca aatatttttt gtgatttcgc tggaaaagaa gctttaaatc ctgaattttt
     3361 acaagataaa gtcaatgttt taaatttata tgaagcttac aataaatatg attataaggc
     3421 attttttgct aaagttgatt ttttaaaaga atatttacaa tttggaagtg ctaaaaattt
     3481 agcaaaaatc ctaaacgaaa tataaaagga taaatcatgc aaaaagaacc aatgagtcaa
     3541 tttggctatg ataagttagc cgcagaatta aaagatttaa aagacaatca acgccctgcc
     3601 gttgtaatag aaatcgatac agcaagaagt catggggatt tgaaagaaaa tgctgaatac
     3661 catgctgcaa gagaaaagca agctttgata gaaagtcgta ttgcagagct tagtgacttg
     3721 ctagcaagag ctcaagtgat cgatccttca agctatgagc acgatagtgt gaaatttggt
     3781 tcaagtgttg tgatcatgga tttggataca gaaaaagaaa gcaaatatac tctagtagga
     3841 atttgcgaag gaaatttaga taagggttat atttccatcg catctccaat agcaaaagct
     3901 atgcttggaa aaaaagaagg agatgatttt aaagtgcgtt tgccaaaagg tgaaagtgaa
     3961 tttgaaatcc tttctataaa ttatgagcct ttgaaatttt aaggataaaa aattttacta
     4021 caaaatggag cgattttaat cgcagatgct catgaaaatg aacaaagaaa gggattttgg
     4081 gaatttttac aagccttaaa aaaaggtaaa atttccaccc ctcaactcat acttataggt
     4141 gatattttcg atttgcttat aggcgaaatc tctgctacac atgaatttgc taaaccttac
     4201 atagaacttt tagaagaatt ggccttaaaa attgaaatta tctacttaga aggcaatcat
     4261 gattttaatc tttcttgttt ttttaaaagg gtaaaaattt ttaacttaca agagcagccc
     4321 ataaagctta atttgcatac aagtaaaggt aataatcttg ttttaaatag tgcttttata
     4381 aaattagctc acggagatat ttttttacca cctcttttac aatttactct gaaaacatta
     4441 agaaatcatt atttgcttgt atttttgaat tttttaaata ttattactcg taattttatt
     4501 tcaaataaaa ttcttcaaaa tcaaaacaaa aaaaaccttt tttatcaaat aaaagatttt
     4561 gaaaatttag cgaaaaaaag atatgaaaaa tatgaaaatt taggattttg ggtatgtgaa
     4621 ggacactatc atcaaaatca tcaaatcaac aaagaaaaca ttaaatatct taacttagct
     4681 agttttgcat atgagagaag tttttttgta gtagaatatc agcaagaaat caaatttcga
     4741 gaacagaaat tgaggggtca aaatgtttga tgaaaatatc gtgaaaacgg gttcaaatga
     4801 aatggagctt gtcgatttcc gtatctttaa gcaagggcac gataaagtct atgaaggaat
     4861 ttatggtgta aatgtttcta aggtaaggga gattataaaa atcccaagcc ttacagaact
     4921 tccaggtgta cctgattaca tcgaaggaat ctttgatctt cgtggagtgg ttatacctgt
     4981 agtcaatctt gccaaatgga tgcaaatcac tgagccagaa agcactatgc taaaacctag
     5041 agttattatt actgaattta gcaatattct tattggtttt atagttcacg aagcaaaaag
     5101 aattcgtaga ataaactgga aagatataga accagcaact ttttctacag gatcaggtgc
     5161 tttagataaa ggtaaaatta caggtgtaac acgcattgaa aatgatgaag tgttgctaat
     5221 tttagatctt gaaagtgttg ttgaagattt aggaatttac gctccaaaaa cagatataga
     5281 ttttggaaaa atagaaaaat ttactggaac agcacttata cttgatgaca gcatgactgc
     5341 tagaaaacgc gtcaaagaaa tgatgcaaca gatgggcttt caagttgttg aagctaagga
     5401 cggcgtagag ggcataaaca aattagaaga attaagccaa atttatggtg aaagtttaaa
     5461 cgatacttta aaaattatag taagcgatgt cgaaatgcca caaatggatg gtttccactt
     5521 tgctgcacgc attaaagaag atccaagatt taaagatatt cctatagtct ttaactcatc
     5581 tttatcaaat gaatttatga atgagaaagg tgttcaagaa gctggtggag aaggctatct
     5641 tgtcaaattt aacgctagcg atttcttcaa tgaaattgca aaggttatta aaaaacatca
     5701 atctcaagaa caggggtaaa atatggaaga tatgcaagaa atacttgaag actttttggt
     5761 tgaagctttt gagcttgttg agcaaatcga ccatgattta gtagagcttg aatcaaatcc
     5821 agaagattta gaattattaa atagaatttt ccgtgttgca catacggtta aaggatcatc
     5881 aagcttctta aattttgatg ttttaacaaa gttaactcac cacatggagg atgttttaaa
     5941 caaagcaaga catggcgagt taaaaataac tccagatatc atggatgtgg ttttagagtc
     6001 tattgataga atgaaaactt tacttaattc cattcgtgat aatggcaacg atactgctat
     6061 tggtatggat atagaaccaa tttgcgcaag attaacagct atttcagagg gagagtctcc
     6121 tgttgtggca acagattcaa atgaaaaatc tattccacaa gcagaactag aagcaccaaa
     6181 acaagaaata gctactccag aacctgaagt agatgttaat caattaagtg attctgaagt
     6241 tgaagctgaa atagaaagac ttttaaaagt tagaaaagct gaagatcaag ctcgtcgcgc
     6301 acaaaagaaa caaacaacaa atgcggcacc taaaccgact aacaatacag caaataaacc
     6361 tacggaaagt ggagagaaaa aagttcctgc ttcaggtagt aatgctagca gtatggatca
     6421 aaccatacgc gtggaggtaa aaagattaga tcacttaatg aatctaattg gagagcttgt
     6481 tttaggcaaa aaccgtttgc ttaaaattta cgatgatgtt gaagagcgtt atgaaggaga
     6541 aaaattcctt gaagaactta atcaggttgt aagtcaatta agtattatta caactgatgt
     6601 tcagcttgct gtgatgaaaa caagaatgca acctatagca aaagttttca ataaattccc
     6661 aagagttgtt cgtgatttaa gtcgtgaatt aggaaagcaa atagaacttg aaattacagg
     6721 tgaagaaact gaacttgata aatctatcgt agaggaaatt ggcgatccta tcatgcatat
     6781 gattagaaat tcatgtgatc atggtgttga ggatccagca actcgtgcag caaatggaaa
     6841 acctgaaaaa ggtatagtac aacttaaagc ttataatgaa ggcaatcaca tcgttgtaga
     6901 aattacagat gacggtaaag gacttgatcc aaatggctta aaagcaaaag ctatagagaa
     6961 aaatttgatt accgaaagag aagcagatca aatgacagac aaagaagctt ttgctttgat
     7021 tttcaagcct ggtttttcaa ctgcagctaa agtaacaaat gtttcaggtc gtggtgtagg
     7081 aatggatgtt gttaaaacca acatcgaaaa acttaatggg gtaattgaaa ttgatagtga
     7141 gttaggcaaa ggaagttcat ttaaacttaa aattcctctt accttggcaa tcattcaatc
     7201 tttacttgta ggaactcaag aggaattcta tgcaattcca cttgcaagcg ttcttgaaac
     7261 agttagagtg ccaattgatg atatctatac tatcgaaggt aaaaatgtat tacgcttaag
     7321 agatgaagtg ctttctcttg tgagactttc agatgtattt ggagttaaac aagtccttga
     7381 aagcggtgat caaacttatg tcgttgttat aggggtagca gaaagcaagc ttggtattat
     7441 agtagatact cttgtaggac aagaagaaat agttattaaa tctatgggtg attatttaca
     7501 aaatatccaa ggtatagcag gagctacaat ccgtggtgat ggtagagtga cattaatcat
     7561 tgatgtaggt gctatgatgg atatggccaa agaaattaaa gttgatatta aagcgcaatt
     7621 agaatcaagt gccaaaaaac ctaaagaaca accaagtgac tataaagtct taattgtaga
     7681 tgattctaaa atggatagaa ctttaatgca aaaagcttta gaaccgctag gagttagttt
     7741 aatcgaagca acaaatggtg ttgaagcatt gaatattata aaatctggcg aacatgatat
     7801 tgatgcaatg cttatagata tcgaaatgcc aagaatggat ggatacacct tagctggtga
     7861 aattagaaag tattctaaat atcgcaactt accattgata gcagttactt caagaacaag
     7921 taaaactgac cgtttaagag gtgttgaagt gggtatgact gaatatatca ctaaacctta
     7981 ttctccagaa tacttggaaa atgtggttag aaaaaatttg aaactaggat aagaatatga
     8041 gtaatgaaaa attagagcaa attttgcaaa aacagcaaac tcagatggct ggtcctgatg
     8101 tcgatcaaag agaagatgat atcatccaac ttgttggctt tgtagttgga gatgaggaat
     8161 atgcgattcc aattcttaat atacaagaaa tcatcaaacc tatagaatat actagagttc
     8221 ctagtgtacc tgattatgtt ctaggggttt ttaatatgcg tggtaatgtt atgccgctca
     8281 ttgatctagc tcaacgcttt catttaggaa gttctaaaat gacacctcaa acaagatata
     8341 ttgttttaag aggtgagaca aatggaactg gagttggagg aaatgctggt tttgttatag
     8401 atagattaac tgaagcaatt aaaattcaca gaaacagaat cgatccacca cctgaaactt
     8461 tagttaaaga caaaggtatg atttatggta taggaaaaag agatgaaaat atcttaacta
     8521 tactcaaagt agaagctttg cttaagcgcg aattttaatg attaaacttt gtgtttttga
     8581 ctttgatgct actttaatgg atggtgaaac catcgatatt ttagctacag cgcatggcaa
     8641 gggtaatcaa acaagcgaaa ttacccgcca tgctatgact ggagaacttg attttttcga
     8701 aagtcttcaa aaacgagtaa gctttttaaa aggtatgtct tataaaaaag ttttagaatt
     8761 aagtagcaca cttccactaa tgcgtggagc acatgaactt atccaatatt taaaatctaa
     8821 aaatatacaa attgttattt ttagcggtgg ttttcatgaa ggcataaatc ctgctatgca
     8881 aaaacttgga attaacctcg gttttgcaaa ttatctgcat cataaaaatg acattttaac
     8941 agggctagtt ggtggggaaa tgatgttttc aaattcaaaa ggcttaatgc tacaacgatt
     9001 aaaaagcttt ttaaatttga aaacagatga agtgatgtgt gttggcgatg gggcaaatga
     9061 tttggcaatg tttaacgaaa gtggattaaa gattgcattt tgtgctaaag aaattttacg
     9121 ttctcaagct gatatttgca tagatataaa agacttaaaa gaaataataa aggtaatata
     9181 atgaaaaatt tttctctttg gtgtgatttt atagaaaata gttttttaga taatgaattt
     9241 ttaaatttat tatcacatgg aattaatggc gctacttcaa atcctgctat ttttaaaaat
     9301 gctattttaa attctccaat ttataaagat aaaattctta aattaaaaga aaaaaaaaca
     9361 aaagatattt atgaagaatt agcaatttct gatattcaaa aagcagctga taaattagct
     9421 cctctttttt atcaaaaaaa tgatggattt ataagtattg aaatagatcc aagacttcat
     9481 gataacacaa ctcttagttt aggtgaagct aaaagacttt atagtgctat tggcaaagaa
     9541 aatataatga ttaaaattcc agctacaaaa gcttcttatg aagtaatgta tgaacttatg
     9601 aaaaatggta ttagcgtcaa tgctacctta attttttctc ttgaacaaag tcaaaaatgt
     9661 tttgaagctt taaatgcagg tttagtcgaa tttagaaaaa acaatatagc cttaaaagaa
     9721 caaaacacta gaacaccaca agctgttata agtatttttg taagtcgttt tgatagactt
     9781 ttaaatccta aggctaagga gcaaaatcgt attggaattt taaatgcaaa tttagcttat
     9841 aacaatatct actcaaaaaa tgaacctaat attcgtgcct tgtttgcaag caccggagtt
     9901 aaaggagatg atctgccaaa agactattat atcaaagaac ttctttttga gaattctgtt
     9961 aatactgctc ctcttgatgc aatagaggca tttaaaggaa aaatgcattt taaaaaacct
    10021 ttaatgaatt ttgaaattta tacagaactt aatcaaatca tttctcaaag tgaacgagaa
    10081 aaagcttgca atgatttatt aagtgatggc ctagagcaat tttgtattgc ttttgaagat
    10141 attttaaaag ctctttaatt aacgtatttt tatcatttta ttctttgaaa gttttaatat
    10201 ttttgatggg atattttcga aaaatttctc atcaagtatt atatcggcaa cacttctagc
    10261 ccattcttca tcaaattctt ttccatgctt gtttgccgaa gatgaataaa aatagccatt
    10321 tttacttaaa aaattcgcat gtttacactc tttcacaata cgaatggcct gattattggg
    10381 ataaataaaa gttgtttttt tagaacgacg tactaaattt ttaaaagatt ttggaattct
    10441 tgctaaactt tttaactcgc aaaatttcgc agaagtgatt aagcaaggct gatttttatc
    10501 tctacctttt aaagcattaa tctcttctaa atttttactt aaaaatccta ccgtagtatc
    10561 tgtttgagct aaataaatca agatttaagc cactcttgca aactctttac atctaggcaa
    10621 gatttactct gtatagcttt aatcgatttt gcacctgcta aagctgatcg taaatttgta
    10681 aaataaggta ttttaaaacg aataatattt tcacgaattt ttttcgtatc gcctttaaaa
    10741 ctgtgactat cgcttgtatt gataactaag tgaatttctc catttttcaa tttatcttca
    10801 acattggggc gtccttctga aattttatgt acaagttcgc actcaaaacc actttctaaa
    10861 atttccttgc aagttccccc tgttgccata agcttaaagc caagctttac atattctgca
    10921 gcgatttttt tggtatattt tttatcctta tcttttaagg agataaatac cacgccttgc
    10981 tctggaagat gattaaacga tgcaatttga cttttcgcat aagaatttgc aaaatccttg
    11041 cttataccca taacttcacc cgttgaacgc atttcaggac ctaattctaa atcacttcca
    11101 ctaagttttg caaatggaaa tactgcttct ttcacgctca tatattttgg agttttaggg
    11161 cgtaaaattt tagtatcaaa attaaccact ttaaaagtat cataaaattt taaagcttct
    11221 tttaaatttc cttgccacat cacacgcgtt gccacttttg ctaaaggaat acccgtagct
    11281 ttactaacaa aaggtatggt acgactagct ctaggattta cctctatcat ataaagctca
    11341 ttattatgta aagcaaattg tatatttaaa agtcctacaa ctcccaaatt taaagcaata
    11401 tctgcggttt tttgtgcaat aaattcttgc attttttcat cgatattgca aggcggcaaa
    11461 gaacaagcac tgtcacccga atgaattcct gcttcttcta tgtgctccat aattcctgca
    11521 acataaacat ctttgccatc acaaatcgca tcaacatcaa tttctgtagc attgtctaaa
    11581 aactgatcga tcaaaacagg gcttttatcg cttacatcca cagcttcttg catatagagt
    11641 ctaagttcag cctcatcatt taccacgcgc atcgcacgcc cacctaaaac ataacttggt
    11701 cttacaagca caggataccc tatatcacta gccttaagaa ccgcttcttc tacgcttgtt
    11761 gcagtagaat tttttggctg attgatacct agctttgtaa taaattcggc aaatttcttt
    11821 ctatcttctg ccatatcaat tactcttgcg ctagtaccta taatcttagc tccaaaagca
    11881 cttaaacgct tagcaaattt caaaggagtt tgtccaccaa aatgcacaat cactccatca
    11941 ggtttttcac gctcaatcac cgctcttaaa tgttcgaaat caataggctc gaaatacaaa
    12001 atatcacttg tatcatagtc agtcgaaacg gtttcaggat tacaattata cataatagtt
    12061 ttaataccca tatctttaag cgcaaaagaa gcatgtacgc aagcatagtc aaattctata
    12121 ccttgtccta tacggtttgg ccccccacct ataatcatca cttttttttc ttttttatcc
    12181 ttagcatcgt ttttactttg agtgagttcg cttacattga tacttgaata aagataagga
    12241 gttaaggctt caaattcacc cgcacaagta tccacttcac taaattctgc gatgattttt
    12301 tgcttcattc ttacataata aatatcattt tggcttaatt ctaaattatc tttcaaattt
    12361 acaagcaagg ctatcatttt atctgaaaag cccatagttt ttgcttttct caaaagagcc
    12421 ttattgttta aaatatccat atcaatttgt tcttcaaaat ctacaatttc tttaatctgt
    12481 gttaaaaacc aaggatctat tttacaaagc tcataaagtt cttctacgct aaaaccttcc
    12541 ctaaaagctt gagcaacata aagtaaacgc ttttcattgg cattgcgaat tttaaaaaca
    12601 agatcatttc tatcttcaaa ttttacccta tcaaaaccac ttaaagaacg ctcaagcgaa
    12661 caaagtgctt tttgtatact ttctttaaaa gtgcgtccta tagccattac ctcacccaca
    12721 cttttcatag ctgtacctaa agttgtattt gctcctggaa atttttcaaa ggtaaagcga
    12781 ggaatttttg ttacaatata atcaatcaca ggctcgaaag atgcaggagt tcctgtaata
    12841 tcatttttaa tctcatctaa gctaaaacct actgccaaaa gtgtcgcaac ctttgctata
    12901 ggataacccg ttgccttaga agctaaagca cttgatcttg aaactcttgg attcatttct
    12961 ataactatca ttcttccatt ttttgggttg atagcaaatt gcacattact tccgcctgta
    13021 tctacaccaa tttcacgcaa aatagcaaaa gaagcattac gcataacttg atattcttta
    13081 tctgtcaaag ttaatgctgg agctattgta atactatctc ctgtatgaac tcccatagga
    13141 tcgatatttt ctatgctaca aactatgata caattatccg ctctatcgcg tataacttcc
    13201 atttcatatt ctttccaacc taacaaactt tcttcaatca aaatttcatg aataggtgat
    13261 aaagctaaag cagtattggt aagttcttta aattcgtcca tattgtaaac cacaccactt
    13321 ccagcacccc ctaaagtata agaagcacgg atcatcaaag gaaagtcgat ttcatctacg
    13381 gcttttaaag cttcgtcata attatacgca tacatcgatt ttggcaaatc catgccaatt
    13441 tttttcatac attctttaaa aacctgacga tcttcgcctt ttttaatcgc ctcaggattt
    13501 gcgcctaaaa atttcacatc tcctaaaagt ccgctttcat aaacttccat agcaacattt
    13561 aacgctactt gtccacccat agttggcaaa attgcatcaa ttttttcttt tttaataata
    13621 cttaaaatac tttcttttgt tatgggttct atataagtcg catctgcaaa ttcgggatct
    13681 gtcatgatgg ttgcaggatt tgagttgatt aatactacac gatatcctaa ttcttttaaa
    13741 gtctttgcgg cttgagttcc agaataatca aattcacaag cttgtcctat cacaatagga
    13801 ccacttccta taagtaaaat gcttttaata tctgttcgtt ttggcataaa ttttcctaag
    13861 agcataaatt tgggctgatt ataacaaaaa ttagttttat aaactttgaa attatcgata
    13921 taattttaaa aaataaacac tctgctttta
//
LOCUS       DAPIWQ010000033        13787 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.033, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000033 DAPIWQ010000000
VERSION     DAPIWQ010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13787)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13787)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13787
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.033"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..261)
                     /locus_tag="RJ267_000688"
     CDS             complement(<1..261)
                     /locus_tag="RJ267_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HDV7388564.1"
                     /translation="MNKSSIFYTITFIFIFAGVSVILGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGVISEKEFEEQTKNYNKMDEITEAKQIRKIL"
     gene            complement(258..932)
                     /locus_tag="RJ267_000689"
     CDS             complement(258..932)
                     /locus_tag="RJ267_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDV7388565.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIVSSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            complement(1008..2426)
                     /gene="htrA"
                     /locus_tag="RJ267_000690"
     CDS             complement(1008..2426)
                     /gene="htrA"
                     /locus_tag="RJ267_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HDV7388566.1"
                     /translation="MKKIFLSLSLASALFAASINFNESTATANRVNPAAGNAVLSYHD
                     SIKDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFSQRKGKNDKEVVSS
                     LGSGVIISKDGYIVTNNHVVDDADTITVNLPGSDIEYKAKLIGKDPKTDLAVIKIEAN
                     NLSAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGYLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGKID
                     RGFLGVTILALQGDTKKAYKNQEGALITDVQKGSSADEAGLKRGDLVTKVNDKVIKSP
                     IDLKNYIGTLEIGQKISLSYERDGENKQASFILKGEKENPKGVQSDLIDGLSLRNLDP
                     RLKDRLQIPKDVNGVLVDSVKEKSKGKNSGFQEGDIIIGVGQSEIKNLKDLEQALKQV
                     NKKEFTKVWVYRNGFATLLVLK"
     gene            2626..3519
                     /locus_tag="RJ267_000691"
     CDS             2626..3519
                     /locus_tag="RJ267_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family protein"
                     /protein_id="HDV7388567.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARKYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSRNTGGVNLDDILKDLFGGGFGG
                     RSRGGFNGFSSKGFSSGFGGFGGFEEEILDSNLELHIPFEKAVKGGEHSFNFQGETIK
                     FKIPHGIKEGEKLRIRSKGKQSRNGARGDLIIIVKIEESPIYTREDDDLYQKVDISLK
                     TALFGGKINIKTLKEGKEEAIINITPNSKNNQKIRLKGYGVQNRKSDIYGDMYLILNV
                     VLPNLDTLDEKFIELLKEKLP"
     gene            3535..3909
                     /gene="hspR"
                     /locus_tag="RJ267_000692"
     CDS             3535..3909
                     /gene="hspR"
                     /locus_tag="RJ267_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HDV7388568.1"
                     /translation="MEQHYDEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDRIKLILRLTRDMGINLAGVDVILKLKNQLHEFENLIDELRLELSKQQDK
                     EAASKAVVKHKNSFDLIFYEKK"
     gene            3915..5540
                     /locus_tag="RJ267_000693"
     CDS             3915..5540
                     /locus_tag="RJ267_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDV7388569.1"
                     /translation="MDNFLEIFLITVAIAIVLNVIFKKFEIPTIIGYIAAGEIISEIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLMAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIEKLLFTSLISALILITLLFFIGKYLVDRIFRLIIHTSSQEIFIS
                     TVLFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLDVVAQNWFLIIVLTLLVMALKFGIVFGFLFLYTKKRVALKTAFAIAQIGEF
                     ALAIFSLLQAKNMLDIKTSQILIVVSILTMIITPFILNNIRKITNVVEDIALNTNAVQ
                     NIDSNIKLKNHLVVFGYGRLGQEVVQKIKNTGVPYLVLESDLNLVELGVSRGENVVFA
                     NAAQEETLKIANIEECAVAIITVTNEAKLEILCQVLANYPKPIDTIIHVNGTLKKMLF
                     SSIDENIRIIRSEKVIARNLVQEALECRIHKNT"
     gene            5550..5882
                     /locus_tag="RJ267_000694"
     CDS             5550..5882
                     /locus_tag="RJ267_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388570.1"
                     /translation="MTKNEEKALRVKYLRNLEKFFNGAISALKKEDFDKTKFEERMLK
                     NAKFFEKNPAVNLNSTYAKNLEFFVNACLDFSKEKSELLNLANALDKQKKQGEKKEKH
                     KNYLKDYE"
     gene            5879..6499
                     /locus_tag="RJ267_000695"
     CDS             5879..6499
                     /locus_tag="RJ267_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDV7388571.1"
                     /translation="MINVFFDMDGTLIDSANAISCAVNEIRQDLNLAPLSREIIMQTI
                     NTPNIDWAKELYNIENFHHSSFKEGYEKYFVKHYEQSVVLFEGVKELLEFLKSKNCFL
                     AIATNAPQSSLSNILKKHDIIPYFDKILGVSLGIEPKPHPMMLELLKSEAPYKTSVFI
                     GDSQKDKECAKNANLPYFHAKWYQKNLKENEFSNASELKGFLQKYL"
     gene            6555..8549
                     /locus_tag="RJ267_000696"
     CDS             6555..8549
                     /locus_tag="RJ267_000696"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HDV7388572.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWNNVLEEYRLVSDFKF
                     YYTPRRLVFFHENFADKQEDSFAEFIGAPKNVAYKDGVLTPAGQSFLQKARISENELS
                     FKEIKGKEVLYHQKAIKGLQSQEILGEMVEKFLKSLSFGKSMRWGANSFEFIRAIRSI
                     ACILNDELVNFQSYGVKSTKKTFIHRSVSYDLQDFNNAKEYFELLEKNYIILDPIKRK
                     EKILEQFKLIESQKNIQIGEDEELLAEVVAITEYPNALLGSFEEEFLEIPSEVIITSM
                     RENQRYFAVFNDKGLSNHFIVVSNAVCKDYSKIIHGNERVLRARLSDAMFFYQNDLQN
                     GLKPEKLAKMTYLEGLGTMQDKSLREIKIAEILCQMLHNDKIENISTALKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYQICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKEFDIQILLEKLSNHYKSFD
                     MQILKDFIFERLYTFYTVNASFVKAVLSSQNTDLIHINQSVNALIKLSKKDNFNENFA
                     TFKRLANIATKNPHKVDESLFVQEAESKLYKAFQEKTKANSLQEKLENLFALKPFIDE
                     FFNQVMINAEDEKLKNNRQALVYEIYAEFLKIADLKELSL"
     gene            8546..9367
                     /locus_tag="RJ267_000697"
     CDS             8546..9367
                     /locus_tag="RJ267_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HDV7388573.1"
                     /translation="MKALWILLSLTLWLFGAQNLELIKGQALFLELDKKDFLSLKNND
                     KNIPTFAHPKNQEKILAIFSLPYKNPPQNTKLIAFYKDKKEEIFIKTLEGNYKSEKLQ
                     IENKKIFPPKTIQERITKELKEANAIYSSYTPKALFNGAFNIPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRATTGTPIYAANSGVVKIAKDRYFAGNSVVIDHGFGIYSQYYHLS
                     KIDVKIGQKIKKGELIGLSGATGRVSGPHLHFGILAGGKQVDPLDFVSKFNAIFQ"
     gene            9364..10314
                     /locus_tag="RJ267_000698"
     CDS             9364..10314
                     /locus_tag="RJ267_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HDV7388574.1"
                     /translation="MKFSDFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLNLIDEKILKPPLELVEIGANEGYLSRDFLAALLELRPEIFSQISFFIIEPHEKLR
                     TLQKKTLEGVEFTHKNSLKECHFKNAFFFCNELFDSFTCELIDHDKMAFVENFKLIFK
                     NMDENLITKCKALNLTKGELSLELENFFKDLNQTCERFIFAGFDYGTLNPQSFSLRIY
                     QKHEVFSPFEVSLKDFFGKSDLTYNVNFTHLQKLIKEYDFKPLAFKKQSLAFMDFGFE
                     DLLEYTKNKNIKTYESFLSQAKILFFNFDEKFHFFEFQKN"
     gene            complement(10311..11285)
                     /locus_tag="RJ267_000699"
     CDS             complement(10311..11285)
                     /locus_tag="RJ267_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HDV7388575.1"
                     /translation="MLGIDLGSNTLRAVQMDEKLNKLKEYEFVIGAAKNLNQSGEISK
                     EAIQRLKNTLSILAKEQDLSKARAVATAAFRKASNTNEIFAHLKKEFGIDFKLIDAKS
                     EAKISVLGMQSGLRRLKIWGEFAYCDLGGASCELSFGKSFKSFDFGIISFYEKNCHSY
                     YKTCISYKKLIKKYPKFIINIKDKKLKIHFLIANPYLKHLAFRAFDEVAMIKKELCSL
                     GAKTVVLNSGVPTTLSALKQNISYEKYEATKVNGKKLCHKDFLNYAIKLFHMEEKKAI
                     KEVGTMRKNYLSAGCLLFYALFDKHKLLVIDEGLREGVCLASMKNIKF"
     gene            11341..12114
                     /locus_tag="RJ267_000700"
     CDS             11341..12114
                     /locus_tag="RJ267_000700"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HDV7388576.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIVARHGDQITLHVRE
                     DRRHAQDFDLENIIKFCKSPVNLECALNDEILNLALKLKPHRVTLVPEKREELTTEGG
                     LCLNHAKLKQSIEKLQNANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYANLHNAL
                     FSNISHTAFALKELDQDKKTLQAQFEKELQNLELCAKKGLELGLKVAAGHGLNYKNVK
                     PVVKIKEICELNIGQSIVARSVFTGLQNAILEMKELIKR"
     gene            12111..13205
                     /gene="pdxA"
                     /locus_tag="RJ267_000701"
     CDS             12111..13205
                     /gene="pdxA"
                     /locus_tag="RJ267_000701"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HDV7388577.1"
                     /translation="MKKLAISIGDINSIGLEILVRSHEELSKICTPFYFIHESLLNKA
                     LKLLNLKLFNAKIVAFKDDKDYEFNFIKKENSLEIYSFCLPLGFKVDENFEIQAGEID
                     AKSGLYGFLSFKAASYFVYEKHAHALLTLPIHKKAWEDAGLKYKGHTDALRDFFKKNA
                     IMMLGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKETHFKKMGLLGFNPHAG
                     DYGVIGGEEEKIMEKAIAFVNAFLHSKKDEKFFKKALKDENLQKELLLNFKGKGVYLP
                     YPLVADTAFTKTGLKNCNRLVAMYHDLALAPLKALYFDKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKINTKSYFEAAKFAINLHSKA"
     gene            complement(13195..13779)
                     /locus_tag="RJ267_000702"
     CDS             complement(13195..13779)
                     /locus_tag="RJ267_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388578.1"
                     /translation="MLGLSLASLGALSFDELIYKDEVKPSFDCSKIKYDGKSDDELMI
                     CNKIGVRNEFDNKKLALVDNIYSSLYQNISKKADKKMKKDFKAISKKMLKERKICIKN
                     MQNTKAGENPLLSLLNASDCMQEAYIKVLLELMQRAKKDTKTKEVLEQIFKNKVDKYE
                     NLLTQSLNTNKDLQDFIDSLAKEDLIDSRAKFKL"
BASE COUNT         4991 a         2126 c         2007 g         4663 t
ORIGIN      
        1 aagaatttta cggatctgct ttgcttctgt tatctcatcc attttattat aattttttgt
       61 ctgctcttca aattcttttt cactgataac tcctgcaaaa tttaagagcc ttgcattagc
      121 tatcaaagaa tattttgtgt ttaattctct agtataattt tgctgatcat attctataag
      181 ccacaaaaag ccaagtataa cactaacccc agcaaaaata aaaataaaag ttatagtata
      241 aaaaatcgaa gatttattca ttgagtaagc ttataaccta ttccacgtat agagtgaata
      301 tattttggag tttttggatc atctcccatc ttttgacgaa ttctactgat aataacatct
      361 atacttttat tactagaatc ctcgctaata gaagaacaat tataaacaag ctcttcacga
      421 cttaccactc caccctcttt tttaatcaaa tagcttaaaa tatcaaattc agcattagtt
      481 aaagtaagct cttgtccttt catggtaata atatgcttat attgatcata aacaagatct
      541 tttacacttt ttgctatggc gctttttgta tttgaaatac gtcttaaatg acttttaata
      601 cgtgcttgta attcttttgg attataaggt tttggtaggt aatcatctgc tccaagctct
      661 aaagcattaa ccttatctgt aatatcatgt cttgcgcttg aaacaataat aggcgtatca
      721 tactttttac gaatctcttc acacacttca agcccatcaa gccctggcaa agaaaggtct
      781 aaaatgataa gctgatattc ttttaatgca agcttagaaa gacctatata aggttcatga
      841 gctatatcaa ctttcatatc aaatttttcc aaatattcag ctgtaatttc tgctaattct
      901 aaatcatctt ctatcataag aatatttgtc atagttttcc tttattttaa acttaatttt
      961 aattttaaac taaaatttat aacgaaagga aaatccttcc gttattttta tttaagcaca
     1021 agcaaagtcg caaaaccatt gcgatatacc caaactttgg taaattcttt tttattaact
     1081 tgttttaaag cttgttctaa atcttttaaa tttttaattt cactttgtcc aacacctatg
     1141 ataatatcac cctcttggaa accagaattt tttcctttgc tcttttcttt aacactatca
     1201 accaaaacac cattaacatc ttttggaatt tgcaaacgat ccttaagtct tggatctaaa
     1261 tttctcaaac tcaaaccatc aatcaaatcg ctttgtacgc ctttaggatt ttctttttcg
     1321 cctttaagaa taaaacttgc ttgcttattt tctccatctc tttcgtaact taatgaaatt
     1381 ttttgaccaa tctctaaagt tcctatataa tttttaagat caataggact ttttataacc
     1441 ttatcattaa ctttagtaac taaatctcca cgcttaagcc ctgcttcatc agcacttgaa
     1501 cctttttgaa catcagtgat taaagctcct tcttgatttt tgtaagcttt tttagtatca
     1561 ccttgcaaag ctaaaatagt cacacctaaa aatcctctat caatcttgcc tttttcaata
     1621 agttttttag ctatatcttt aaccatattt gaaggtatgg caaaacctat gccgttattt
     1681 ccaccaccac gagaaagaat agctgaatta atacctacta aatatccgcg actatccacc
     1741 aaagctccac ctgaatttcc tggattgata gaagcatctg tttgtataaa attttcatat
     1801 tgatttaaac ctatattgtc tttatttaaa gcagatatta tcccacttgt aacactaaaa
     1861 ccaactccaa aaggatttcc aagtgcaaaa acaacatctc cttccattaa atcatcagaa
     1921 tttgtaaaag taatagctga aagattatta gcctctattt ttataacagc caaatctgtt
     1981 tttggatctt tacctataag ttttgcttta tattctatgt cgcttcctgg taaattcact
     2041 gtaatcgtat cagcatcatc tacaacgtga ttatttgtta ctatataacc atcttttgaa
     2101 ataatcaccc ctgatcccaa agaactcacc acttctttat cattttttcc ttttctttga
     2161 gaaaaatcaa aatcaaaaaa ttgtttaaaa taaggatcat taaaaaaatc atccaaaggg
     2221 cttggacgat ttgctcttgt aatagttttt gaggtggaaa tattaaccac tgattttttt
     2281 gcatctttaa tagaatcatg ataagaaagc actgcatttc cagcagcagg attcacacga
     2341 ttagccgttg cagtcgattc gttaaaatta atacttgcag caaataaagc acttgctaaa
     2401 cttaatgata aaaaaatctt tttcatttca tttccttttg ttcttaaaga taaattatct
     2461 cgtaaaatat tttactgtct tcatagtata aaaccgaaaa tttacaaaat tgtaaataaa
     2521 accttgagtg ataaaaattt ataaaacttg attgacttag gctaaagttt atgttataat
     2581 ttaatcctct atataatcaa gtaaaaattt ttaaggaaat ataacatgaa tagtttatac
     2641 gaaactcttg gagttagcaa aaacgctagt gcagatgaaa taaaaaaagc ttaccgtcgc
     2701 ctagctagaa aatatcatcc tgatatcaac aaagaaaaag gtgctgaaga aaaatttaaa
     2761 gaaattaatg ctgcttatga aattttaagt gacgaaaaaa aacgagctca gtatgaccaa
     2821 tacggcgatt ctatgtttgg tggacaaagt tttcatgatt tttcaagaaa tactggtggg
     2881 gtaaatttgg acgatatttt aaaagatctc tttggaggag gctttggtgg acgctcaaga
     2941 gggggtttta acggcttttc ttcaaaaggc tttagcagtg gttttggagg atttggaggt
     3001 tttgaagaag aaattttaga cagcaatcta gagcttcaca ttcctttcga aaaagctgtt
     3061 aaaggcgggg aacatagttt taattttcaa ggcgaaacca ttaaatttaa aattccacat
     3121 ggtataaaag aaggcgagaa actaagaatt cgctctaaag gaaaacaaag cagaaatgga
     3181 gctagaggag atttaatcat tattgtaaaa atagaagaaa gtcctattta cacaagagaa
     3241 gatgatgatt tatatcaaaa ggttgatatt tctttaaaaa ctgcactttt tggtggaaaa
     3301 ataaatataa aaacactcaa agaaggcaag gaagaagcaa taattaacat aacgcctaat
     3361 tcaaaaaata accaaaaaat tcgtttaaaa ggctatggtg tgcaaaatag aaaaagtgat
     3421 atttatgggg atatgtattt gattttaaat gttgttttgc caaatttaga tacccttgat
     3481 gaaaaattta tagaactctt aaaagaaaaa ttaccttaaa gaaaggaata aaatatggaa
     3541 cagcattatg atgaacctgt atatttaatc agtgttgtgg ctaaagtttt aagcatacat
     3601 ccacaaacct taaggcaata cgaaagagaa ggattgatag agccaagtag aaccgatggc
     3661 aaaataagac tttattctca aagagatatt gaccgtatta aacttatatt gcgtttaaca
     3721 agagacatgg gaatcaatct tgctggagta gatgttatct taaaattgaa aaaccaactt
     3781 cacgaatttg aaaatttaat tgatgaacta cgcttagaat taagcaaaca acaagataaa
     3841 gaagcggcta gtaaagccgt tgttaagcat aaaaatagct ttgatttgat tttttatgag
     3901 aaaaaataaa aataatggat aattttttag aaattttttt aatcaccgtt gctatagcta
     3961 tagttttaaa tgtcatattt aaaaaatttg aaattccaac tatcattgga tatatagctg
     4021 ctggagaaat catttctgaa atttatcatt taagtggcaa aggcgaaatc actcatatag
     4081 ccgaatttgg tatagtgttt ttaatgttta ccatagggct tgaattttct tttaagcatt
     4141 taatggcaat gaaacaagaa gtttttttaa acggctcttt gcagatgctt acttgtggct
     4201 ttgtttttat gctacttgct ataggaattt taggacttgg agataaaagc gctaccatag
     4261 taggctttgc actagcgctt tcttcaaccg cagtggtgct taaaatttta aatgataatg
     4321 gcgatataaa tgagcaatat ggcagaaaag cattgggaat tttgcttttt caagatatag
     4381 ccgttattcc tttgcttttg cttgtagata ttttttcatc caacaatcaa aacatagaaa
     4441 aactcctttt taccagttta atttcagcac ttattttaat cactttatta tttttcatag
     4501 gtaaatatct agtggataga atttttagac tcattatcca cacttcttct caggaaattt
     4561 ttattagtac tgttttattt atggttattg gagcaagttt tttagcaaat tattttggat
     4621 tttcttattc tttgggtgct tttatagcag gtgctttgat agcagaaaca aaatataaac
     4681 acaaaataga agcggacttg atcccattta gagatttgct tttagggctt tttttcataa
     4741 ctgtaggcat gcaaattcaa cttgatgtag tggcgcaaaa ttggttttta atcatagttt
     4801 taacccttct tgtaatggct ttaaaatttg gcatagtttt tggcttttta tttctttaca
     4861 ccaaaaaaag agtagcgctt aaaacagctt ttgccatagc gcaaattggc gaattcgccc
     4921 tagcaatttt ttctctttta caagcaaaaa atatgcttga tatcaaaact tcacaaattt
     4981 taattgttgt ttctatttta accatgatta tcacgccttt tattttaaac aatataagaa
     5041 aaattaccaa tgttgtagaa gatatagcac ttaataccaa cgctgtgcaa aatattgaca
     5101 gtaatatcaa gcttaaaaat catcttgttg tttttggcta cggacgctta ggacaagaag
     5161 ttgtacaaaa aatcaaaaat acaggcgtac cttatcttgt tttagaaagt gatttaaatt
     5221 tagtagaact tggagttagt cggggtgaaa atgtcgtttt tgccaatgct gctcaagaag
     5281 aaaccttaaa aattgccaat atagaagaat gtgccgtagc tattatcaca gttacaaatg
     5341 aagctaaact tgaaatttta tgtcaagtgc tagctaatta tccaaaacct atagatacta
     5401 tcattcatgt aaatggaact ttgaaaaaga tgcttttttc tagcatagat gaaaatatac
     5461 gcatcattcg ctctgaaaaa gtaatcgcta gaaatttagt tcaagaagca ctagaatgcc
     5521 gcattcataa aaatacctaa ggaagaattt tgacaaaaaa tgaagaaaaa gccttacgcg
     5581 taaaatacct aagaaatctt gaaaaatttt tcaatggcgc tatatctgca cttaaaaaag
     5641 aagattttga taaaactaaa tttgaagaaa gaatgctaaa aaatgctaaa ttttttgaaa
     5701 aaaatcccgc ggtaaatctt aactcaacct atgcaaaaaa tcttgaattt tttgtcaatg
     5761 cttgtttaga tttttccaaa gaaaaaagcg aacttttaaa tcttgccaat gctttagata
     5821 agcaaaaaaa acaaggtgag aaaaaagaaa aacacaaaaa ttatttaaag gattatgaat
     5881 gattaatgta ttttttgata tggatggaac tttaatcgat agcgcaaatg ccatttcttg
     5941 tgcagtcaat gaaataagac aggatttaaa cctagcccca ctttcaagag aaatcattat
     6001 gcaaaccatc aatactccta atattgactg ggcaaaagaa ctttataata tagaaaattt
     6061 ccatcattct agttttaaag aaggctacga aaaatatttt gtcaaacact atgaacaaag
     6121 cgtggtgctt tttgaagggg tgaaagaact gttagaattt ttaaaaagca aaaattgttt
     6181 tttagctatt gctactaacg ccccgcaaag ctcactttca aacatactta aaaaacacga
     6241 tatcattcct tattttgata aaattttagg cgtaagttta ggcatagaac ccaaacctca
     6301 tcctatgatg ctagagcttt taaaaagcga ggctccatat aaaacaagcg tttttatagg
     6361 agatagtcaa aaagataaag aatgtgctaa aaatgctaat ttgccttatt ttcatgccaa
     6421 atggtatcaa aaaaatttaa aagaaaatga atttagcaac gctagtgaac ttaaaggctt
     6481 tttgcaaaag tatttataag ttttttaatg aaattttagt taaaattaga aataaatttt
     6541 aaaaagagta aattatgagt gaattattaa tagaaattgg tacagaagaa ttacctgcta
     6601 ttcctttgct aaaagaatta gctaatatag aaaaaaaatg gaacaatgtt ttagaagaat
     6661 accgcttggt aagtgatttt aaattttatt atactccgcg tcgtttagtt ttttttcatg
     6721 aaaattttgc agacaaacaa gaagatagct ttgctgaatt tataggagca cctaaaaatg
     6781 ttgcttataa agatggagtt ttaactcctg cgggacaaag cttcctgcaa aaagcaagga
     6841 tcagtgaaaa tgaactctct tttaaagaaa tcaaaggcaa ggaagttttg taccatcaaa
     6901 aagctattaa aggtttgcaa agtcaagaaa ttttaggaga aatggtagaa aaatttctaa
     6961 aaagtcttag ttttggcaaa agtatgcgct ggggtgcaaa ttcttttgaa ttcatccgtg
     7021 cgatccgttc tatagcttgc attttaaatg atgaacttgt taattttcaa agctatggag
     7081 taaaaagtac taaaaaaact ttcattcaca gaagcgtaag ttatgatttg caagatttta
     7141 acaatgcaaa agaatatttt gaactactag aaaaaaacta tatcatcctt gatccaatca
     7201 aaagaaagga aaaaatactt gagcaattta aactcataga aagtcaaaaa aatatacaaa
     7261 ttggagaaga tgaagagctt ttagctgaag tagttgctat cacagaatat cctaatgcac
     7321 ttttaggaag ttttgaagaa gaatttttag aaattcctag cgaagtaatc atcacttcaa
     7381 tgagagaaaa tcaacgttat tttgcagttt ttaacgataa aggcttaagt aatcatttta
     7441 tagtagtaag taatgcagta tgtaaggatt attcaaaaat catacatgga aatgaaagag
     7501 ttttgcgtgc aagacttagc gatgcaatgt ttttttatca aaatgattta caaaatggct
     7561 taaaacctga aaaacttgcc aaaatgacct atcttgaagg tttaggcaca atgcaagata
     7621 aaagtttaag agagattaaa attgctgaaa ttttatgtca aatgctccat aatgataaaa
     7681 tcgaaaatat cagcacagca ctaaaatacg ccaaagcaga cttagccaca caaatggttt
     7741 atgaatttac tgatttgcaa ggcattatgg gaagttatta tgcgcaaaaa atgggcttag
     7801 attatcaaat ttgcttagct atcaaagaac aatatcttcc taattccgaa caagctccac
     7861 ttccaagtac agaattttca agcatagtag cccttgcaaa caagcttgat acccttatag
     7921 gactttttag cataggaaaa attccaagcg gaacaaagga tccttatgcc ttaagaagag
     7981 ctgccaatgg gatcattaaa attgctttaa atttaaataa agaatttgat atccaaattt
     8041 tattagaaaa actttcaaat cattataaaa gctttgatat gcaaatttta aaagatttta
     8101 tttttgaaag actttatact ttttatacag tcaatgcttc ttttgtaaaa gcggttttaa
     8161 gctcacaaaa tacagatctt atccatatca atcaaagcgt aaatgctctt ataaaactta
     8221 gcaaaaaaga taattttaat gaaaattttg caacctttaa aagactagcc aatatcgcca
     8281 ctaaaaatcc tcataaagtt gatgaaagtc tttttgttca agaagcagaa agtaaacttt
     8341 acaaagcttt tcaagaaaaa actaaagcca actctttaca agaaaaactt gaaaatcttt
     8401 ttgcacttaa gccttttatt gatgagtttt ttaatcaagt gatgattaat gctgaagatg
     8461 aaaaacttaa aaataatcgc caagctttgg tttatgaaat ttatgcggag tttttaaaaa
     8521 tcgccgatct taaagagtta agcctatgaa agccctatgg attcttttaa gccttactct
     8581 ttggcttttt ggagctcaaa atttagaact catcaaaggt caagctttat ttttggaact
     8641 agataagaaa gattttttat ctttaaaaaa taatgataaa aatattccca cctttgcaca
     8701 tcctaaaaat caagaaaaaa ttctagctat tttttcctta ccttacaaaa atcccccgca
     8761 aaacaccaaa cttatcgcat tttataaaga taaaaaagaa gaaattttca taaaaacttt
     8821 agaaggtaat tataaaagtg aaaaattgca aattgaaaac aaaaagattt ttccgccaaa
     8881 aaccatacaa gaacgcatca ctaaagaatt aaaagaagcc aatgcgattt atagttctta
     8941 tactccaaaa gctttattta acggtgcttt taatatacct ttaaattctt ttatcacaag
     9001 tgattttggc aaagcaagaa cttttaatga aaaagtagca agttatcaca gcggaacgga
     9061 ctttagagct accacaggaa cacctattta tgcagccaat tcaggtgtag taaaaattgc
     9121 aaaagatcgt tatttcgcag gaaattcagt agtcattgat catggttttg gaatttattc
     9181 acaatattat catctttcta aaatcgatgt taaaatagga caaaagataa aaaaaggtga
     9241 acttatagga cttagtgggg ctacaggtag ggtaagtggg ccgcatttgc attttggaat
     9301 tttagctgga ggcaaacaag ttgatccttt ggattttgta tccaaattta atgctatttt
     9361 tcaatgaaat ttagtgactt tttccatgct tggctccatg aaagctatta taaaaatgct
     9421 gtaagtatag gaaaaaacgg agattttttt actgctgtga gcgtaggaaa tctttttggc
     9481 acacttttag ccaagcattt tttaaattta atagatgaaa aaattctcaa acctccacta
     9541 gaacttgtag aaataggcgc taatgaaggc tatttaagtc gtgatttttt agccgctttg
     9601 cttgaattaa gacctgaaat tttttctcaa atttcttttt tcatcataga accacatgaa
     9661 aaattaagaa ctttacaaaa aaagacttta gaaggagtgg aatttactca caaaaatagt
     9721 cttaaagaat gccattttaa gaacgctttt ttcttttgca atgaactttt tgatagtttt
     9781 acctgcgaac ttatagatca tgataaaatg gcatttgtag aaaattttaa acttattttt
     9841 aaaaatatgg atgaaaattt gatcacaaaa tgcaaagctt taaatcttac aaaaggcgaa
     9901 ctcagtttag agcttgaaaa tttttttaaa gatttaaacc aaacttgtga gagatttata
     9961 tttgcgggat ttgactatgg aactttaaat ccacaaagtt ttagcttaag aatctatcaa
    10021 aagcacgaag tttttagccc ttttgaagta tctttaaaag attttttcgg caaaagcgat
    10081 ctaacttata atgtcaattt tactcatctt caaaaactca tcaaagaata tgattttaaa
    10141 cctttagctt ttaaaaaaca aagtcttgct ttcatggatt ttggttttga agatttatta
    10201 gaatacacaa aaaataaaaa cattaaaact tacgaaagtt ttttatctca agctaaaatt
    10261 ttatttttta attttgatga aaaatttcat tttttcgaat ttcaaaaaaa ctaaaatttt
    10321 atatttttca tactcgctaa acaaaccccc tctcttaaac cctcatcaat gactagaagt
    10381 ttatgtttat caaacaaagc ataaaacagc aaacaacctg cactcaaata attttttctc
    10441 atcgtgccta cttcttttat agcttttttt tcttccatat gaaaaagttt aatagcataa
    10501 tttaaaaaat ccttatggca aagtttttta ccatttactt tagttgcttc atacttttca
    10561 tagcttatat tttgttttaa tgcgctaagt gtggtaggaa ctccggaatt taaaaccacc
    10621 gttttagccc ctaaagaaca aagttccttt ttaatcatag ccacctcatc aaaagcccta
    10681 aaagctagat gctttaaata gggatttgca attaaaaaat gaattttaag ttttttatct
    10741 ttaatattta tgataaattt aggatatttt tttatcaatt ttttataaga aatacaagtt
    10801 ttataataag aatggcaatt tttttcataa aaactaataa taccaaaatc aaaactttta
    10861 aaactttttc caaaagaaag ctcacaagaa gcccctccta aatcacaata cgcaaactct
    10921 ccccaaattt taagccttct taaacctgat tgcataccta aaacactaat cttagcttca
    10981 cttttggcat ctataagctt aaaatcaatc ccaaattctt tttttaaatg ggcaaaaatt
    11041 tcatttgtat tgcttgcctt tctaaaagct gcagtcgcta cagctctcgc tttacttaaa
    11101 tcttgctctt tagctaaaat actcaaagta ttttttaatc tttgtatggc ttctttagaa
    11161 atttctccac tttgatttag atttttcgct gccccaataa caaattcata ttcttttaat
    11221 ttatttaatt tttcatccat ttgtactgct cttaaagtat ttgaaccaag atctatacct
    11281 aacatgactt tccttatttg attttatagt ataatagcaa aaaagttcta aaggaaaaat
    11341 atgcttttag gtgtaaatat cgatcatatt gcagtgttaa gacaagctag aatggtaaat
    11401 gatcctgatc ttttagaagc tgcttttata gtagctagac acggagatca aatcactttg
    11461 catgtaagag aagatcgccg tcatgctcag gattttgact tggaaaatat tataaaattt
    11521 tgcaaaagcc ctgtcaattt agaatgtgct ttaaatgatg aaattttaaa tttagctctt
    11581 aaactcaaac cccaccgcgt tactttagtg cctgaaaaaa gagaagagct tactacagaa
    11641 ggggggcttt gtttaaatca tgctaaatta aaacaaagca tagaaaaact tcaaaatgca
    11701 aacattgaag tttcactttt tatcaatcct agtttagaag atatagaaaa atcaaaaatt
    11761 ttaaaagccc aatttataga gcttcataca ggacattatg cgaatttaca caacgcactt
    11821 tttagcaata tctctcatac tgcttttgcc ttaaaagaac ttgatcaaga taaaaaaacc
    11881 ttgcaagctc aatttgaaaa agaattacaa aatttagaac tctgtgccaa aaaaggccta
    11941 gaacttggct taaaagtagc cgcgggacat ggtttaaatt acaaaaatgt aaaacccgta
    12001 gtaaaaatta aagaaatttg cgagctaaat ataggacaaa gcattgtagc aagatctgta
    12061 tttacaggac ttcaaaacgc tattttggaa atgaaagaac ttattaaaag atgaaaaaac
    12121 tagccattag tataggcgat ataaacagca taggacttga aattttagtg cgttctcatg
    12181 aagaactaag caaaatctgc acaccttttt attttatcca cgaaagctta cttaataaag
    12241 ctttaaaact tttaaattta aaacttttta atgcaaaaat cgtagctttt aaagatgaca
    12301 aagactatga gtttaatttt ataaaaaaag aaaattctct tgaaatttac tctttttgcc
    12361 ttcctttagg ctttaaagtg gatgaaaatt ttgaaatcca agccggagaa atagatgcaa
    12421 aaagtggact ttatggtttt ttaagcttta aggcggcaag ttattttgtc tatgaaaaac
    12481 acgcccatgc cttacttact ctacctatac acaaaaaagc ttgggaagat gcaggactta
    12541 aatacaaagg acacaccgat gctttaaggg atttttttaa aaaaaatgcc attatgatgt
    12601 taggttgcaa agaacttttt gtagggcttt ttagcgaaca tataccttta gctaaagtga
    12661 gtaaaaaaat cacttttaaa aatttaagta tctttttaaa agatttttac aaagaaacgc
    12721 attttaaaaa aatggggctt ttaggtttta atcctcacgc tggagattat ggagttatag
    12781 gtggagaaga agaaaagatc atggaaaaag ctatagcctt tgttaatgcc tttttacact
    12841 ctaaaaaaga tgaaaaattt ttcaaaaaag ccttaaaaga tgaaaattta caaaaagaat
    12901 tgcttttaaa ttttaaaggc aagggcgttt atctacccta tcctttagtg gctgatacag
    12961 cttttactaa gactggttta aaaaactgca atcgtttagt ggctatgtat cacgatcttg
    13021 cccttgctcc tttaaaggcc ttgtattttg ataaaagcat caatgtaagt ttaaatttac
    13081 ctatcatacg cgttagcgtt gatcatggca cggcctttga taaggcctat aaaaatgcta
    13141 aaatcaacac taaaagttat tttgaagcgg ctaaatttgc aatcaattta cattctaaag
    13201 cttaaattta gccctagaat caatcaaatc ttctttagct aagctgtcta taaaatcttg
    13261 caaatcttta ttggtattta aactttgagt gagtaaattt tcatatttat caactttatt
    13321 tttaaaaatt tgctctaaaa cttctttagt ctttgtatct ttttttgctc tttgcataag
    13381 ttctaataaa accttaatat aagcttcttg catgcaatca cttgcattga gtaaagataa
    13441 aagaggattt tcccctgctt ttgtattttg catatttttt atacaaattt ttctttcttt
    13501 aagcatcttt tttgaaatgg ctttaaaatc ttttttcatc tttttatctg ctttttttga
    13561 aatattttga tataaactac tatagatgtt atctactaaa gcaagttttt tattatcaaa
    13621 ttcattacgc acaccaattt tattgcatat cataagttca tcatcacttt tgccatcata
    13681 tttgatttta gagcaatcaa aactaggttt tacttcatct ttataaataa gctcatcaaa
    13741 actcaaagcc cctaaactcg ccaaacttaa accaagcaat aaaataa
//
LOCUS       DAPIWQ010000034        13304 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.034, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000034 DAPIWQ010000000
VERSION     DAPIWQ010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13304)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13304)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13304
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.034"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..1656
                     /locus_tag="RJ267_000703"
     CDS             <1..1656
                     /locus_tag="RJ267_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7388579.1"
                     /translation="IGKTNFLRALNLFFNHNNGVEYNQNEDRPYHIQKGSTGGRKTEL
                     IGYFTKNNVTHILKVEFHKDKIVYILNGKMVEWKVARDIVESFKLLFIEASNVNMPSV
                     ISAILENDALLALDNKRKKQSEPLRTLKLFIEQSKKAIEDIEKDINIYLKQMLDFDNT
                     LKDKEIKIRFAEFEKLRDVVKTMTSVTLDDGNDHLMDHKGSGAQRIVLLSLMQYITDK
                     ITTDIIWAIDEPEAFLQPKLQKKIMEIFKNIVREKKQPIIMTTHSQYFVDFNNLVNTH
                     LFKLTKEEKIYARKKGRVFQEINTKPIYIGTAFEKLSVIKKHLGIETNDNWDIMPYNI
                     LVEGEEDKKYLQMLIEILNLSMPNIIHSGGATKIAGFLEYFNNQCSYTSFKPYFICIF
                     DNDEEGRKQYNKISKDNLYPNIKLDAKKLKRYGESIQENNRDIWEIEDFMPIKIIVDA
                     VNIILKYKQYNTITNSQISDRKKLAFKNMSILDYLEKCIADRNEEKERFILNTESRKK
                     EICQNAFRAREKYTKNDLEDYHVDFMNELIDSFNKVDLIKKDN"
     gene            1659..4754
                     /locus_tag="RJ267_000704"
     CDS             1659..4754
                     /locus_tag="RJ267_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HDV7388580.1"
                     /translation="MSKAKTSEFDLEQFVISSLLEHGWCYEKPVRATDEVLLETSLVN
                     ALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNINTTKDGESRADI
                     INLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATIN
                     SAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNK
                     SLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNK
                     AISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITDRNDLD
                     DQLFGTFASCANLLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPENDNVFECLS
                     LRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALPNATYIGF
                     TGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGKRLVNE
                     LDEKLENQDSQKAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMIVSISRS
                     VAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMR
                     NIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVV
                     DYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQMLPNDYEKYFELD
                     TGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAI
                     KARFLKFAKENENENLLNQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLL
                     EVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEA
                     LDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKLLALVSEILQ
                     IIKNNVSIDWMIKENVRARLRVAVKRVLNKYGYPPDMQQLAIDGVLAQAEILAKELAN
                     E"
     gene            4982..6058
                     /locus_tag="RJ267_000705"
     CDS             4982..6058
                     /locus_tag="RJ267_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HDV7388581.1"
                     /translation="MQYKILENNRIASKGYAMLSKDAKFTPFEFSRHAIGDNDILIKI
                     LYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVNS
                     CGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAVCVPKDA
                     PMEKVAPLLCAGITTYSPLKFSNIKEGSSVAVAGFGGLGMMAVKYAVKMGAKVSVFAR
                     NENKKADALAMGVSSFYTSCDKNAVKERFDLIISTIPTPYNPAIYLDLLKFGGEMAIV
                     GLPPHEVAPSISVITFVHKAGKKVYGSLIGGIAETQEMLDFSLKHGIYPETELITPQE
                     IDKAYENLTSGKAKFRYVIDMTKE"
     gene            complement(6060..6509)
                     /locus_tag="RJ267_000706"
     CDS             complement(6060..6509)
                     /locus_tag="RJ267_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HDV7388582.1"
                     /translation="MLELIGELSLQNYMGEWLEIARKPAFFQKSCLNSKAKYELKYKN
                     GIPYVEIENFCSKKNEISSIKGKAKIVSNRQLAVRFNIFMNLFNKVNYEIIFVDSEYK
                     VAIVGSPDKKYLWILARNIIDEKNIKELLNIAKQRGFDISDVVFDKY"
     gene            complement(6497..6844)
                     /locus_tag="RJ267_000707"
     CDS             complement(6497..6844)
                     /locus_tag="RJ267_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDV7388583.1"
                     /translation="MTKENSPCNFEECGFNYTLALINGKYKMSILYCLFRYEIVRYNE
                     LKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYSLSKRGQSLIPILQAMSK
                     WGKKDKKGKKCLN"
     gene            6944..7522
                     /locus_tag="RJ267_000708"
     CDS             6944..7522
                     /locus_tag="RJ267_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDV7388584.1"
                     /translation="MKNILLLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHI
                     DQGYDPKEEIQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHE
                     NPSKNYGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGM
                     KALPTFMCNDVVKNPQVEKYLNEYELHLKKIF"
     gene            7555..8451
                     /locus_tag="RJ267_000709"
     CDS             7555..8451
                     /locus_tag="RJ267_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDV7388585.1"
                     /translation="MTRTKYLYILLVIAMFLWGSSWPTSKILANYTDTSIITFWRFFF
                     VVLGSFFVLNFLKIPLKIEKTALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTT
                     MIPIFSYLIFMIAIFFQKNKKSTHKITKSEILGLFLGLLSGFCLLNLGSLEDLFGKFN
                     ILFLTCSFIWALMAVFNHKAKGAHPLAINFYINLISILMFSWILFDVKSYEIFHFEFK
                     FWISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNAL
                     TLLGCALAIGAIYFINIYGKKA"
     gene            complement(8448..9413)
                     /locus_tag="RJ267_000710"
     CDS             complement(8448..9413)
                     /locus_tag="RJ267_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HDV7388586.1"
                     /translation="MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANIL
                     LGNKQDEAGIELCLKGGKYEFLDENYFVLSGAEFEAKLDNQKIKTCKVYQANKGDILE
                     LDLAKIGFRGYLCVAGGFEVKSFLNSKSSDAKMGAGVFEGRALQKDDILNTHNTFIPF
                     NLEARECENPLFKSPKEPIIRVILGTNEDAFTQKGIETFLNTTYKVGLKSDRMAIYAE
                     SSESIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIATVIENDLSLL
                     AQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI"
     gene            complement(9394..10134)
                     /gene="pxpB"
                     /locus_tag="RJ267_000711"
     CDS             complement(9394..10134)
                     /gene="pxpB"
                     /locus_tag="RJ267_000711"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HDV7388587.1"
                     /translation="MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKEGEI
                     YGIDELVSAYASLLIYFNPCVLSLNSLLDFLEKIKKDIKLAEQNSSLCIEVPLCYDEE
                     FGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPR
                     AKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKA
                     ISKDEFFDIQEQVAKKVYQKEIYEYKNH"
     gene            complement(10144..10911)
                     /locus_tag="RJ267_000712"
     CDS             complement(10144..10911)
                     /locus_tag="RJ267_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HDV7388588.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDETLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     GMKIQHFKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNAKALEFVKKIKENLKKEQIQICALENFI"
     gene            complement(11053..11862)
                     /locus_tag="RJ267_000713"
     CDS             complement(11053..11862)
                     /locus_tag="RJ267_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDV7388589.1"
                     /translation="MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKGFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGKPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD"
     gene            11941..12627
                     /locus_tag="RJ267_000714"
     CDS             11941..12627
                     /locus_tag="RJ267_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7388590.1"
                     /translation="MDYIFDGFKQALFLLFNADESVISAIKTTLLSSSISIVLALLIG
                     FPLGFILGFFEFKLKRFIKLIVDTSLSFPTVAVGLILYALISSRGPLGEFGLLFTIKA
                     LILGQFILALPIVIALFSNLIENMNKKHFLLIKSFHLSPLKLVLTMIYELRFALISVV
                     ALAYGRIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLILIAFCL
                     NFITHKLKRT"
     gene            12629..>13304
                     /locus_tag="RJ267_000715"
     CDS             12629..>13304
                     /locus_tag="RJ267_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7388591.1"
                     /translation="MIEISNLFFNYQNKEVLKIKNLKLDTSKISILMGANGSGKSTFL
                     RILKFLEGDFSKNISYFGNFKPNNKQKREIYLLFPEPILLNRSVRANFLFTLKTYGIK
                     EDIEERIKESLMFLNLDESFLSKHPNELSSGQSQKIAFAIALSVRAKYYLLDEPSAFL
                     DKNTTLLFKKTILKMHENFNTGFLIASHDKHFLDSLAQKKLYLHSGEILEFENTNVFE
                     LENQGVK"
BASE COUNT         4665 a         1932 c         2217 g         4490 t
ORIGIN      
        1 attggaaaga ctaatttttt gagagcctta aatttatttt ttaatcataa taatggtgtg
       61 gagtataatc aaaatgaaga tagaccatat catattcaaa agggatcaac tggtggtaga
      121 aaaacagaat taataggcta ttttacaaaa aataatgtca cacatatttt aaaagttgaa
      181 tttcataaag ataagattgt gtatatatta aatggaaaga tggttgaatg gaaagttgct
      241 agagatattg tagaaagttt taaactttta tttatagaag caagtaatgt gaatatgcct
      301 agcgtaattt ctgctatttt agaaaacgat gctttgttag ccttagataa taaacgaaaa
      361 aagcaaagtg agcctttaag aacattgaaa ttattcatag aacaatcaaa gaaagctata
      421 gaagatatag aaaaggatat taatatatat ttaaaacaaa tgttagattt tgataacacc
      481 ttaaaagaca aggaaataaa aattagattt gccgaatttg aaaaattaag agatgttgta
      541 aaaactatga catctgttac tttagacgat ggaaatgacc acttaatgga tcataaaggg
      601 agtggtgctc aaagaatagt acttttatct ttaatgcaat atattacaga taaaattaca
      661 acagatataa tatgggcaat tgatgaacca gaagcatttt tgcagccaaa attacaaaaa
      721 aagattatgg aaatatttaa aaatattgta agagagaaaa agcagcctat aattatgaca
      781 acacattctc aatactttgt agattttaat aatttagtca atactcattt gtttaaattg
      841 acaaaagaag aaaagattta tgctagaaaa aaaggtagag tatttcaaga aattaacaca
      901 aaaccgattt atataggcac tgcgtttgaa aagttatctg ttattaaaaa acatttaggt
      961 atagaaacca atgataattg ggatattatg ccttataata ttttagttga aggagaagaa
     1021 gataagaaat atttgcaaat gctaatagaa attttaaatt tatctatgcc aaatataata
     1081 cattctggtg gtgcaactaa aatagcaggt tttttagaat attttaataa tcagtgcagt
     1141 tatacttctt ttaaaccata ttttatatgt atttttgata acgatgaaga aggtagaaaa
     1201 caatacaata aaatatcaaa agataattta tatccaaaca taaagctaga tgcaaaaaaa
     1261 ttaaaaagat atggagaatc gatacaagaa aataatagag atatttggga gattgaagat
     1321 ttcatgccta taaaaataat agtagatgca gttaatatta tacttaagta taaacaatac
     1381 aatacgataa caaactctca gataagtgat agaaaaaaac tagcatttaa aaatatgtca
     1441 attttggatt atttagaaaa atgtattgct gatagaaatg aagagaaaga aagatttata
     1501 ttaaacactg aatcaagaaa aaaagaaatt tgccaaaacg catttagggc tcgtgaaaaa
     1561 tatacaaaaa atgatttaga agattatcat gttgatttta tgaatgaact tattgatagc
     1621 tttaacaaag tagatttgat aaaaaaggat aactaaaaat gagcaaggcg aagactagtg
     1681 agtttgattt agagcagttt gttatatcat cactacttga gcatgggtgg tgctatgaaa
     1741 agcctgtaag agccactgat gaagttttgc tagaaactag ccttgtaaat gcactttgta
     1801 ggctaaatcc acagcttgat ttatcaaaag ctaatgaaat ttataaggag ctaaaaagca
     1861 aaaatcatct tagcctttta gatagcaatg aaaactttca ttataagctt gtaaatgggg
     1921 taaatataaa cactacaaaa gacggcgaaa gcagagctga tatcataaat ctaattgatt
     1981 ttaataatgc aagcaacaat gaatttatag caacaaacca gctaagcatc acagaagcta
     2041 aagaaaacaa aatccccgat gtagtgctat atataaatgg aattccgctt gttttaatgg
     2101 agctaaaaag cccaagcgat gaaaacgcca cgataaactc agcttataat caaataaaca
     2161 cttataaaca aacaatccca agtattttta catataatgc tttttgtgtg ataagcgatg
     2221 ggtattttgc tagggcgggg agtatttcgg ctgatttttc aaggtttatg gcgtggaaaa
     2281 gtagcgatgg gataaactac gctccaaaca agtctttaga aattaaaacc ttaatagatg
     2341 gtatgctaaa tccaaaaacc ttgctagata tcatttgcaa tttcatagtt tttgaaaaag
     2401 agcaaataag agatttaaat ggtattttaa gtataaaaac taccaaaaaa atcgcttgct
     2461 atcatcaata ctacgcagta aataaagcca ttagtagaac aatcacagca agtagcaaag
     2521 acggagataa aaaaggtggc gtggtgtggc atacgcaagg tagtgggaag tctttgtcta
     2581 tggtgtttta tagtgctaaa gcgataaagg ctttaaataa tcctacgatt ttgcttatca
     2641 cggatagaaa tgatctagat gatcagcttt ttggtacttt tgcaagttgt gcgaaccttt
     2701 taagacaaga gccaaaacaa gcaaacgata aagagcattt aaaagagctt ttaagggtag
     2761 ctagtggtgg agtggtattt actactattc aaaaatttag tccagaaaat gataatgtat
     2821 ttgagtgctt atcgcttaga gataatatca tcgtaattgc agatgaagca cacagaaccc
     2881 aatacggctt tgatgcaaaa gtagtagaag aaaagtcaaa aagtggcgat gtgctagggc
     2941 aaaagatagt ttatggtttc gcaaaatatc tgcgtgatgc tttgccaaat gctacttata
     3001 taggatttac aggaacgcca attgaaagcc atgatataaa cacccctgca gtttttggaa
     3061 actacataga tatatatgat atatcaagag ctgttgaaga tggtgctact gtgagtatat
     3121 attatgaaag cagacttgcc aaaatagagc taagcgaaga aggaaaaagg cttgtaaatg
     3181 aattagatga aaagcttgaa aaccaagata gccaaaaagc aaaagctact aagctagaag
     3241 ctttagtagg tagcacaagc agactaaaac aaatcgctaa agatatagta aaacactttg
     3301 aaacaaggtc tagtaagctc ggcggaaaag gtatgatagt aagtataagc cgaagcgtag
     3361 ctataaaact atatgatgaa atcataaaaa taagaccaag ttggcatagc gatgagctaa
     3421 gtagcggggc tataaaagta gtgatgactt caagctctag cgatggggta gagtttagta
     3481 aacatcatac aagtaagatt caaaagcagt ttttggcaaa tcgtatgaga aatatagacg
     3541 atgaattaaa actagttata gtggtggata tgtggctaac tggctttgat gtgccatcgc
     3601 ttcatactct ttatatagat aagcctatga aagggcataa tctaatgcaa gctatagcta
     3661 gagtaaatag ggtttataag gataaaccta gtgggcttgt ggtggattat cttgggattg
     3721 caagtgattt gaaaaaagct ttatcatttt atagtgaaag tggtggcaag ggcgatataa
     3781 tcactactca agaagacgct gtaaaagtga tgatagaaaa gcttgaaatc gtagaacaaa
     3841 tgctgccaaa tgactatgaa aaatactttg aacttgatac gggggctaaa cttgaatata
     3901 tacttgatgt agaagagcat atattatcaa atgaagatgg taagaacaga tttataaaag
     3961 aatttgcagc acttgataaa gcctacacga tagctatgcc acacgaaaaa gctttgagca
     4021 taaagaataa aatcgctttt atgtatgcga taaaggctag gtttttaaag tttgctaaag
     4081 aaaatgagaa tgaaaatttg cttaatcaag ctttgataaa gcaagtagta gataaagcta
     4141 ttgtatcatc taaagtggtg gatatttttg atgctagtgg tataaaaaag cctgatatat
     4201 ctatactttc tgatgagttt ttactagaag taaagaatat gaagcgtaaa aatttagcct
     4261 ttgaaatgct aaaaaagata ctaaatgatg agataaaagc aagagaaaag ctaagcctaa
     4321 caaaggctaa aaaattagca caaatgctta gtgatgctat caaaaaatat aacaataagc
     4381 taatctcatc aagcgaggca ctagatgagc taataaatat gagtaaaagc atagtaagta
     4441 tggaagatga ggctaagaag ttaggtttaa aagactatga atacgccttt tactcagcac
     4501 ttgcttgtaa tgatgagtat gaaaagattt taggcaatga aaaactatta gcactcgtta
     4561 gtgaaatact gcaaattatc aaaaacaatg taagtataga ctggatgata aaagaaaatg
     4621 taagagcaag attaagagta gctgtaaaaa gagtgttaaa taagtatggt tatccacctg
     4681 atatgcaaca acttgcaatt gatggagttt tagctcaagc tgaaattttg gctaaggaat
     4741 tagctaacga gtagaattta agcgatactg aaattaaatt tgtttgtatt attttctttt
     4801 atctttatta tagatagctt gatttgtcgt tgcaactatg tctttgttat aaaatttgct
     4861 taattttata caatttcact agtatccagt atttatacta atttttaaaa aattattttc
     4921 actcttgact tatagctact ctaatgtttt ataattataa aaaatcaaaa aaggagcaaa
     4981 aatgcaatac aaaattttag aaaacaatcg catcgcaagt aaaggctatg caatgcttag
     5041 caaggatgcg aaatttacac cctttgaatt tagccgccat gctattggcg ataatgatat
     5101 tttgattaaa atcctatatg caggcatttg tcatagcgat attcacaccg caagaagcga
     5161 gtggggagaa gctacttatc cttgcgtgcc tgggcatgag atagcaggag aagttatcgc
     5221 tgtgggtaaa aatgtgagta aatttaaagt aggagattac gcaggggttg gttgtatggt
     5281 aaattcatgc ggtgagtgcg atgcttgcaa acgctcacaa gagcagtttt gcgaaaatgg
     5341 caaaaccatc tttacttaca atagttgtga tgtatttcat ggcaatgaaa acacttatgg
     5401 gggctactca aacaacatag ttgtaagtga aaaatttgcc gtttgtgtgc caaaagatgc
     5461 accgatggaa aaagtcgcgc ctttgctttg tgcaggaatt accacttatt ctccgcttaa
     5521 attttcaaat atcaaagaag gctcaagcgt agcagtagcg ggatttggcg gacttggtat
     5581 gatggcggtt aaatatgctg tgaaaatggg tgcaaaggtt agcgtttttg ctagaaatga
     5641 aaacaaaaaa gccgatgctt tggctatggg tgtaagctca ttttacacaa gctgcgataa
     5701 aaacgctgta aaagaacgtt ttgatttaat catctcaacc attccaacgc cttataatcc
     5761 tgctatttat ttggatttgc ttaaatttgg cggtgaaatg gcgatagtgg gtttgccacc
     5821 tcacgaagtt gctccaagta tcagcgtgat aacctttgta cataaggcag gtaaaaaggt
     5881 ttatggctcg ttaattggtg gtattgctga aactcaagaa atgcttgatt tttctttaaa
     5941 acacggaatt tatccagaaa ccgagcttat taccccacaa gaaatcgata aagcttatga
     6001 aaatctaacc tcaggaaagg ctaaatttcg ctatgtcatt gatatgacaa aagaataatt
     6061 taatacttat caaaaaccac atcgctaatg tcaaatcccc tttgcttagc gatgtttaaa
     6121 agctctttta tatttttttc atctattata tttcttgcta aaatccaaag atatttttta
     6181 tcaggactac ccacaatggc aactttatac tcgctatcaa caaaaatgat ttcataattt
     6241 actttattaa aaaggttcat aaagatgtta aatctcactg ctaattgcct atttgaaacg
     6301 atttttgcct taccctttat acttgaaatt tcattttttt tactgcaaaa attctcaatt
     6361 tctacataag gaatgccatt tttgtattta agctcgtatt ttgcctttga atttaggcaa
     6421 gatttttgaa aaaaggccgg ttttctagct atttcaagcc attctcccat ataattttgc
     6481 aaagaaagtt cgccaattaa ttcaagcatt ttttcccttt tttgtctttc ttgccccatt
     6541 tgctcatagc ttgtaaaatg ggaattaaac tttgtccacg tttggataag ctatattcta
     6601 ccttgggtgg aatttgagcg tattcttttc tgataattaa accatcgttt tctagttctc
     6661 ttaaggtatt ggttaaagtt ttaaaagata tggagcttaa aaagcgtttg agttcattat
     6721 aacgcacgat ttcatagcga aataagcagt ataaaatact cattttatat tttccattaa
     6781 ttaatgctag agtatagtta aatccacatt cttcgaaatt gcacggagaa ttctctttag
     6841 tcatttaaca ttcctttagt atagtatatt actttatttt ctgtattgaa aatgatatta
     6901 tgctaagtta taattgtatc ataaaattta aaaaaggata aaaatgaaaa atatactctt
     6961 gcttaatggt gctaaagaat ttggaaattc aaaaggacaa cttaatttga cattgcataa
     7021 tcatgcttta gaaattttaa aaacactagg atacgaggta gatcaaactc acatagatca
     7081 aggatatgat cctaaagaag agatacaaaa atttataaaa gctgatgctg tgatctatca
     7141 aatgccagct tggtggatgg gggagccttg gatagttaaa aaatatatcg atgaagtgtt
     7201 tggtttgggt gctggagtgc tttttaaaaa tgatggaaga actcatgaaa atcctagtaa
     7261 aaactacgga aaaggtggtt tagatcatgg taaaaaatac atgttttctc tcacttggaa
     7321 tgcacctctt gaagccttta atgataaaaa tgaatttttt gaaggaaagg gtgtagatat
     7381 ggtgtattgg catttgcata aggctcatga atttataggt atgaaagctt taccaacttt
     7441 tatgtgtaat gatgtggtaa aaaatcctca agtggaaaaa tatctaaacg agtatgaact
     7501 acacttgaaa aaaatttttt aaaaaatttg acttaaaaat ttcaaggtgt aacattgact
     7561 cgaacaaagt atttgtatat cttgcttgtt attgctatgt ttttatgggg ctcatcttgg
     7621 ccaacatcta agattttagc aaattatacg gatacttcta ttattacctt ttggcgtttt
     7681 ttctttgttg tattgggttc attttttgtt ttaaacttct taaaaattcc tcttaaaatc
     7741 gaaaaaactg ccttaaaatg ggtattgata gcaggagttt taaatgggct ttatgccttt
     7801 gtatttttta ttgctataaa gcacggcttg gcaggcaaag gaggagtttt agtaaccact
     7861 atgattccta ttttttctta tttgatattt atgatagcga tattttttca aaaaaacaaa
     7921 aaatcaactc acaagatcac aaagagtgaa attctaggct tatttttagg tttattatct
     7981 ggattttgtt tgctaaattt agggagttta gaagatttat ttggtaaatt taatatttta
     8041 tttttaactt gttcttttat ttgggctttg atggcagtgt ttaatcataa agccaaagga
     8101 gctcaccctt tggcgattaa cttttatatt aatctcattt ctattttaat gttttcttgg
     8161 atattgtttg atgtaaaaag ttatgaaatt tttcattttg aatttaaatt ttggatcagt
     8221 atgtttgtcg tggctttttt atcaactatt ataggaacta gtatttatta ttatgggatt
     8281 cacattttag gaagcgttaa ggcaaattct tttgttttaa tcactcctgc tagtgcttta
     8341 atttgtagtt attttatact agatgaggtg ccaaatgcac ttaccttgtt aggttgtgcc
     8401 ttggctatag gtgctatata ttttatcaat atttatggca aaaaagctta gattaaattt
     8461 tcaaaatcaa gattgatttt ttgatccata gctttaaatt tcatttctct ttgtttataa
     8521 agttctaagg cttcttgcat gctaatgctt tgaaatttaa agctagaacc taacttagct
     8581 tgtgcgagta agcttagatc attttctata accgtggcta tttttgtata gcctcctgtg
     8641 ctttgtcttc ctgccattaa aatgatagga ataccacttt ttggcacttg tatacttcca
     8701 aaaaccgcag gatctgagat gatatctgct gagtttttat gctctatact ttcactagat
     8761 tctgcataaa ttgccattct atcgcttttt aaacctactt tataagtagt atttaaaaag
     8821 gtttctatgc ctttttgggt aaaagcatct tcatttgttc ctaaaataac gcgtataata
     8881 ggctctttag ggcttttaaa aagaggattt tcacattctc tagcttctaa attaaaaggt
     8941 ataaaagtat tatgagtatt taaaatatca tctttttgca aagctcttcc ttcaaaaact
     9001 ccagctccca ttttagcatc actggattta gagtttaaaa aactttttac ttcaaagcca
     9061 cccgctacgc ataaataccc acgaaaacct atttttgcta aatcaagttc taaaatatcg
     9121 cctttatttg cttgatatac tttgcaagtt ttgatttttt gattatcaag ctttgcctca
     9181 aattcagctc cacttaaaac aaaataattc tcatctaaaa attcgtattt tccacccttt
     9241 aaacaaagct caattcctgc ttcatcttgt ttgtttccaa gcaagatatt tgccattctt
     9301 aaagcatctt catccatagc tccacttctt gctatgccaa atttagcaaa tttttttcta
     9361 ccaaagtctt gcaaacttga atttatagat gcttcaatga tttttatact cataaatttc
     9421 cttttgatag acttttttag caacttgctc ttggatatcg aaaaattcat cttttgaaat
     9481 ggctttaaat tttaaaaaca tacccgcttt taaaagagtg ggattttttt catcttcttt
     9541 atcaaaaaat tccaaaggtg ttctagcaat gatttgccaa ccccctggac ttgatatggg
     9601 ataaactcct gtttgtttat cggctatacc tacacttcca gcttctattt ttgctctagg
     9661 gcttgaaagg cgtggggtaa aaagtctttc atctaaacct ccaagataag gaaaacctgc
     9721 cataaaacct agcataaaaa caagataata aggtttagtg tgaagagata taagctcttc
     9781 ttttgaaatt tgattgtgtt tgcacacaaa ttctaaatcc agcccaaatt cttcatcata
     9841 acaaagtgga acttctatac aaagacttga gttttgttct gcaagtttaa tatccttttt
     9901 aattttttcc aaaaaatcaa gcaaggaatt taaagaaagc acgcaaggat taaaatatat
     9961 aagcaagctt gcataagcac ttaccaactc atcaatccca taaatttcac cttcttttag
    10021 ggctttttgt atcctttgtt ctgtgcttaa aacataggca ttgatttgag gtgaaatttc
    10081 ttgctcaaaa cgcaaaagca aagctttact tccactaaaa tgcacactaa acattgctaa
    10141 aacttatata aaattttcca aagcacaaat ttgaatttgc tcttttttta aattttcttt
    10201 gattttttta acaaattcta aagcttttgc attatcccca tgaacacaaa tactatcggc
    10261 ttttaaatca atttctttgc catttatgct tgtaactttg ctttctttta tcatttttat
    10321 cacgcgtttg atagctaaat tttcatcgtg tattaacgcc ccttctaatt ttcttgaaac
    10381 taaagtgcca tcatcattat aggcacgatc tgcaaaaact tcattagcat atcttaaacc
    10441 ctttttctta gctgcttcat tcatagcaga attactaagc cctagaaaaa taatattttc
    10501 atcaaaactc gccactgcct cacaaagtgc taaggctaaa ttttcatcaa tagctgccat
    10561 attataaagc gccccatggg ctttaaaatg ctgtattttc ataccttttg ccttagcaaa
    10621 gccaaataaa gctcctagtt gatacaaggc atagttttta gcctcttcaa agcttatttg
    10681 catattgcgt cttccaaaac ccaaaagatc aggataagat ggatgtgctc ctatgcaaac
    10741 accattttgc ttggctaaat ttaaggtttc atccatcaca caaggatcac ccgcatgaaa
    10801 gccacaagcg acatttactg aacttacaaa ttttaaaatt tcttcatcca ttcccatttt
    10861 ataggcgcca aaactttccc ctaaatcact atttaaatcc actttgaaca ttatttgacc
    10921 ttgtatattt aattattgat tttattatat ctaaagaaga attttaaata agctaaaagt
    10981 tttgaaaaat aaataaaaaa gttacaataa gtaaaaaatg atattttaag caggttaaaa
    11041 cctgcttaat ttttagtctt ttcttgtttt tgcatcaatt acaaataaag gtttattaag
    11101 aagtttaaaa tcagcaatga aatttaaagt cttatcactt gttacccatt tgataaattt
    11161 actagcttct gtataattta catttttaca atgcttagga tttgtcgcta taacagaata
    11221 aaaattttta agactatcat cgccttcatt tacaatgact aagtttggtt tgcctttttc
    11281 attggcttca tatttgatat aagtaccacg atcggttaaa atcacacctt ttttttcttc
    11341 agcgatttta atgcttgcta acataccttg tccgctttgt tgataccagc tttgcttttc
    11401 aggaacaccg ccaagatttt tccaaaggct tttttcttta ttgtcagtgc ctgatttatc
    11461 gcctcttgag atgaaagtaa gcttttcatt tttgataagt tctaagcttt cttttaaatt
    11521 tttaccttta aatttagaag ctaaagattt atctgcgatg atgataaaat cattatacat
    11581 cacaggagtt ctatctacac caaagccttt tttcataaat tctttttcag cctttggaga
    11641 atgcacaaaa agcacatcag cattgcaatc ttcacccatt tttaaagccg cacctgttcc
    11701 tacggcaacc cattttaagg tattgccact ttctttttca taaagaggtt ttagagcatc
    11761 taaaagtcct gtattgtcag tgcttgttgt agttgccatt ttaagttctg ctgcacttgc
    11821 acttaaagct aaagcaaggg ctaaagaaat gatttttttc attttttttc cttataaatt
    11881 tatataaaaa aatattttag cataattatg ctaaaattac ttattttaaa aaggatattt
    11941 ttggattata tttttgatgg ttttaaacag gctttatttt tacttttcaa tgctgatgaa
    12001 agcgtaattt cagctataaa aactacactt ttaagctcaa gtatttctat agttttagct
    12061 ttgcttatag gttttccttt gggatttatc ttaggttttt ttgaatttaa attgaagcgt
    12121 tttataaaac ttatagttga tactagcctt tcttttccaa cagttgcagt aggacttata
    12181 ctttatgcac tgatttcaag tcgaggacct ttgggagaat ttggattgct ttttactata
    12241 aaggctttaa ttttagggca gtttatctta gcgcttccta tagtgatcgc acttttttca
    12301 aatttgatag aaaatatgaa taaaaaacat tttttactta taaaatcttt tcacctaagt
    12361 cctttaaaac ttgttttaac gatgatttat gaattacgct ttgctttgat tagcgtcgtt
    12421 gcactagctt atggacgcat tgtagcagaa gtaggagtag cgatgatagt aggtggaaat
    12481 atcaaatacg atactagaac cataaccaca gctatttctc ttgaaacaaa caaaggcgaa
    12541 tttgctagcg gtatagcttt ggctttggtt ttaattctca ttgccttttg tttaaatttc
    12601 atcacgcaca aactcaaaag aacataaaat gatagaaatt tctaatcttt ttttcaacta
    12661 tcaaaacaaa gaagttttaa aaatcaaaaa tttaaaactt gatacaagta aaattagcat
    12721 cttaatggga gcgaatggaa gtggaaaatc tacattttta agaatattaa aatttttaga
    12781 aggagatttt tcaaaaaata tttcttattt tggaaatttt aaacctaata ataagcaaaa
    12841 gcgtgaaatt tatttgcttt ttccagagcc tattttgtta aatcgtagtg taagggcaaa
    12901 ttttttattt accttaaaaa cttatgggat taaagaagat attgaagaac gcataaaaga
    12961 aagtttgatg tttttaaatt tagatgaaag ttttttaagt aaacatccta atgaactttc
    13021 atcaggacaa agtcaaaaaa tagcttttgc tatagcttta agcgtaagag cgaagtatta
    13081 tttacttgat gaaccaagtg cttttttgga taaaaatact acacttttat ttaaaaaaac
    13141 tattcttaaa atgcatgaaa atttcaatac aggtttttta atcgcaagtc atgataaaca
    13201 ttttttagat tctttggcgc aaaaaaaact ttatttgcac agtggagaaa ttttagaatt
    13261 tgaaaatact aatgtttttg aactagaaaa tcaaggtgtg aaat
//
LOCUS       DAPIWQ010000035        13043 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.035, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000035 DAPIWQ010000000
VERSION     DAPIWQ010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13043)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13043)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13043
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.035"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            66..965
                     /gene="hisG"
                     /locus_tag="RJ267_000716"
     CDS             66..965
                     /gene="hisG"
                     /locus_tag="RJ267_000716"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HDV7388592.1"
                     /translation="MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERQSLGENPSYKLLKKLDFG
                     YCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCTLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYESRACLIQKENALSKEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQALLPGVERPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            973..2259
                     /gene="hisD"
                     /locus_tag="RJ267_000717"
     CDS             973..2259
                     /gene="hisD"
                     /locus_tag="RJ267_000717"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HDV7388593.1"
                     /translation="MQILVYDNLDEKQKEEALKRPAISAKDEISKIVSSIIKEVQEKG
                     DKALIEQALKFDKAEISKIKITQEEITQASNRLDKDLQEAILVAYENIKKFHEAQIPH
                     EIALETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPA
                     KINDAVLFCAKLCGVDEIYQMGGAGAIAALTYGTQSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGAAIDMQAGPSEVLVIADDLANEKFVASDLLSQAEHGADSQVILVCLSQDFAK
                     KASDEVQSQLELLPRKELASKSIANSRIIIAKDLNQALEISNLYAPEHLIIQTQNPRE
                     LLKGVKHAGSVFLGAYSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMTVQEL
                     SKEGFLALGKSVEILAQNEHLDAHKNAVTFRLESLK"
     gene            2256..3314
                     /gene="hisB"
                     /locus_tag="RJ267_000718"
     CDS             2256..3314
                     /gene="hisB"
                     /locus_tag="RJ267_000718"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HDV7388594.1"
                     /translation="MSQKILFIDRDGTLIEEPKSDFQIDTLEKLRFEKDAIPTLLKLK
                     KFGFKFVMVSNQDGLGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCA
                     CRKPKTAMLEEYIKHELYDKEQSFVIGDRESDMILASNLGVRGLKYGELSWKEIENEI
                     LSSFRSASYQRTTKETDIKVKVCLNGGKVSIKTGIDFFDHMLEQIAVHGGIGLEISCK
                     GDLEIDEHHSVEDVALALGACIKKALGDKIGIARYGFALPMDECLASCAMDFCNRPHL
                     VYKAKFKKSHLGALSTEMIEHFFYSLSYAMGVSLHLKVKGKNDHHKAEGLFKAFAKAL
                     KMAVKIESENLASSKGVI"
     gene            3311..3898
                     /gene="hisH"
                     /locus_tag="RJ267_000719"
     CDS             3311..3898
                     /gene="hisH"
                     /locus_tag="RJ267_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HDV7388595.1"
                     /translation="MKIIIIDTACANLASLKFCLDRLGFNATISRDLKELESADKLFL
                     PGVGTAKEAMKNLEQFNLIDFIQNTKKPLLGICLGMQILGNFSEELNQETLKLIDFTT
                     QKFKAKEGFTFPHMGWNEVYSSHALFKGLEGAYFYFVHSYCVGLGKYTIADCEYSQKF
                     SASVMKDNFYGVQFHPERSSEAGEILISNFIKDIG"
     gene            3895..4626
                     /gene="hisA"
                     /locus_tag="RJ267_000720"
     CDS             3895..4626
                     /gene="hisA"
                     /locus_tag="RJ267_000720"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HDV7388596.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVV
                     IGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNVRLYKLIHEIFPNICIQASGGVASLKDLENLKGIC
                     SGVIVGKALLDGVFSVEEGIRCLAN"
     gene            4611..5567
                     /locus_tag="RJ267_000721"
     CDS             4611..5567
                     /locus_tag="RJ267_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG2958 family protein"
                     /protein_id="HDV7388597.1"
                     /translation="MSSKLSYKELTLEILKQSDRPLSVNEIWQKALEQGLDKKLSSIG
                     QTPIATLGARIYVDIKELQHNSLFIKASQKPTTFWLKERENELLKLDNKNEITNEKQE
                     KNKFHERDLHPLLVKFLYENLDFNLNCKTIYHEQSKKGKGGEDKWNYPDIVGVYFPYD
                     DYEKETITLLENIKQNSYKLFSFELKIALNFSNLKECYFQAVSNSSWANEGYLVVLQE
                     IDSEVLSELRRLNQSFGIGVIKLEKDISNSQILISAKEKELDIQTLNMLINKNPNFKE
                     FIDDINKQIKVGKEAKIQANFDEIKSDEEMEKYLKEKCILEK"
     gene            5568..6335
                     /gene="hisF"
                     /locus_tag="RJ267_000722"
     CDS             5568..6335
                     /gene="hisF"
                     /locus_tag="RJ267_000722"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HDV7388598.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDIAASARKERISREWVSEVAKNINISFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLITRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKHSGKSTLE
                     WVKKVQDLGAGEIVLNMMNQDGVKNGYDLEQLEAVYKICKVPLIASGGAGKMEHFLEA
                     FKLGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            6337..6960
                     /locus_tag="RJ267_000723"
     CDS             6337..6960
                     /locus_tag="RJ267_000723"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HDV7388599.1"
                     /translation="MQNFKELNEKIAWQKVDNLLPVIIQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEESGNFLNIIDLSLDCDNDTLLILANPVGPTCHTGD
                     ISCFEKISKNADFVFLARLEKLINARKNADENTSYTAKLFKSGTKRIAQKVGEEGVET
                     ALAATVKDKEELICEAADLMYHLSVLLADANLSFSDVISKLKERHKA"
     gene            complement(6985..8145)
                     /locus_tag="RJ267_000724"
     CDS             complement(6985..8145)
                     /locus_tag="RJ267_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
                     N-succinyltransferase"
                     /protein_id="HDV7388600.1"
                     /translation="MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQ
                     ASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     DGHQNIDLLKIIKDKFKDDEFSFVCLFEDKEPLSVESIYLKLYLLSTKKVPLRSINLN
                     GAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEEL
                     AKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVKLNEALH"
     gene            complement(8171..9277)
                     /locus_tag="RJ267_000725"
     CDS             complement(8171..9277)
                     /locus_tag="RJ267_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HDV7388601.1"
                     /translation="MKEQILEKLKTVKYPGFEKDIVSFNFVKDIKIQDDGVFIDIEIV
                     SANPEVANEIRKNTIEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPIAAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSKRYLMA
                     AEKIWSFIEKINNEGGADNSAIQPVMNGKSACSH"
     gene            9400..10515
                     /locus_tag="RJ267_000726"
     CDS             9400..10515
                     /locus_tag="RJ267_000726"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HDV7388602.1"
                     /translation="MSEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSF
                     YPFKKIVVTSSNITYMKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLV
                     SKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKAL
                     DQNLEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLDLPTPSFEIFTGNGFDV
                     HEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMK
                     FKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEF
                     RINVKATTTEKLGFIGRKEGMAVLSSVNLKYFDWTRL"
     gene            10512..11399
                     /locus_tag="RJ267_000727"
     CDS             10512..11399
                     /locus_tag="RJ267_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDV7388603.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDAGYSCEIINSFDEYNGEKYYDI
                     ILLSTNTNNFLKAVGQFKHSIIILLISYISTDTVSNPLKLGASDYIQKPFMIEELIRK
                     IKHYQDFRKLSILNKAYQSYIKSRLETIKIPEYNYKKLKLPLILKSNKQSSADAFVFN
                     YANECDITLSFIDLTSTNSVEKVMKLPTENNLLFLSNFQALKAAEKEKLLDFIQNKNV
                     ILHTNSNTDDLKINCINLNDNEKNINSNEILTIDEYVKYVIINYQNIFPDTDLSKKLG
                     ISRKSLWEKRKKYEISKKK"
     gene            11377..12537
                     /locus_tag="RJ267_000728"
     CDS             11377..12537
                     /locus_tag="RJ267_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HDV7388604.1"
                     /translation="MKSARKNKNIIIDQNEFGILSLIKEGLLGTCTHLMNEKEVNEII
                     KSGKFKGESFPYPLSFAPKNAEEALNDIKSGDRIDLMLDEKVVGHIDFKSQFKNNKNF
                     SDIFSPNTCSLEDMGTTCISGKIEIYNSQIEKIKENFQQIKNNLNAQKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVIFLVESFDVNGFEFELKEAYLKKFIQNYLPPDRIFIFP
                     LKNINIFHAHLNPGLESIIAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYG
                     IEVIVLPEFVFCDQCRMIVSTRSCPHGCHHHLHYNSQSLKDLLRAGIIPPAIFIRKEV
                     SSVILTSLFPNRLKNMQKIYNELFPTDGILEYKNDEEFYQKLLEIHQMSYMV"
     gene            12542..13042
                     /locus_tag="RJ267_000729"
     CDS             12542..13042
                     /locus_tag="RJ267_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HDV7388605.1"
                     /translation="MQKLFLTFFYSGSVKKASGTFGTIAALIPAFFILKYLGINTLFL
                     LSILIFVASIRVIDDYEKKTGIHDDKHIVIDEVAGVFLACAIAASVENSIVNFILAFV
                     LFRLFDITKPSIIGKIDKKVKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFNLVFWDI
                     NLKDLF"
BASE COUNT         4716 a         1921 c         2228 g         4178 t
ORIGIN      
        1 ccttgctaaa aattcaacta cttatgctaa tataagtttt taatttttaa tttcaaggat
       61 atgttatgca agaaaacact cgtttacgca ttgcgataca aaaatcaggt agactttcaa
      121 aagaatccat agagcttctt tcagaatgtg gtgttaaaat gcatatccat gaacaaagct
      181 tgatcgcttt ttctacaaat ttacccatag atattttacg cgttagagat gatgatatcc
      241 ctgggcttat ttttgatggg gttgtagatt taggcattat aggggaaaat gttttagaag
      301 aaaatgaact tgaacgccag tctttaggag aaaatccaag ctataagctt ttaaaaaagc
      361 tagattttgg atattgccgt ctttctcttg ccttacctca agaaaataaa tttcaaaatt
      421 tgaaagattt tgaaggctta aggatagcta cttcttatcc acaactttta aagcgtttta
      481 tgaaagaaaa tgggattaat tataaaaatt gtacgcttac aggttctgtt gaagtagccc
      541 ctagggcaaa tttagccgat gcgatttgcg atcttgtttc aagcggggca actttacaag
      601 caaacaatct taaagaagtt aaagtcattt atgaatctcg tgcttgtttg attcaaaaag
      661 aaaatgcttt aagtaaagaa aaacaagcct tagtggataa aattatgttg cgtgtagcag
      721 gagtaatgca agcaagagaa tctaaataca ttatgcttca tgctccaaaa gaaaagcttg
      781 ataaaattca agccctactt ccaggagttg aaagaccgac tatcttacct ttagcacacg
      841 atgaaaaaaa tgtagcttta catatggtaa gtaaagaaaa tcttttttgg gaaaccatgg
      901 aggctttaaa agaagaaggt gcgagttcga ttttagttct gcctatagaa aaaatgttaa
      961 agtgagtaaa aaatgcaaat tttagtatat gataatttgg atgaaaaaca aaaagaagaa
     1021 gcgttaaaac gccctgctat aagtgcgaaa gatgaaattt caaaaatagt aagttctatc
     1081 attaaagaag tgcaagaaaa aggcgataaa gctttgatag aacaagcttt gaaatttgat
     1141 aaggctgaaa tttcaaagat taaaatcact caagaagaaa tcactcaagc aagcaatcgt
     1201 ttagataaag atttacaaga agctatttta gtggcttatg aaaatatcaa aaaatttcac
     1261 gaagcccaaa tcccacatga aatcgctctt gaaactacaa aaggcgttaa atgtgaagtt
     1321 ttaacacgcc ctatagaaaa agtaggactt tacataccag ggggtttggc acctttgttt
     1381 tcaacggttt taatgctagc tattcctgca aaaattgcag gttgtgaaaa aatcgtttta
     1441 gcaagtcctg caaaaatcaa tgatgctgtg cttttttgtg ctaagctttg tggcgtggat
     1501 gaaatttatc aaatgggcgg tgcaggagct atagcagctt tgacttacgg tacccaaagt
     1561 gttttaaagg tggataaaat ttttggccca ggaaatgcct ttgtaaccga agcaaaacgc
     1621 caagtaagta gtgatataaa cggagcagct attgatatgc aagcaggacc tagtgaagtt
     1681 ttagtcatag ctgatgattt agctaatgaa aaatttgtag ctagtgattt gctttcacaa
     1741 gctgaacatg gtgcagattc tcaagtgatt ttagtgtgtt taagtcaaga ttttgctaaa
     1801 aaagcaagtg atgaagtcca aagtcaatta gaacttttgc ctcgcaaaga acttgcaagc
     1861 aaaagcattg ctaattcacg cattatcata gctaaagatt taaatcaagc cttagaaatt
     1921 tcaaatcttt acgcccctga acatttgatc atacaaactc aaaatccacg agaactttta
     1981 aaaggtgtaa aacacgcagg atcagtattt ttaggagctt attccccaga gtctatgggt
     2041 gattatgcaa gtgggacaaa tcatgtttta cctacttatg gacttactaa aacgcattct
     2101 agtttaggtt tggcagattt tagtaaaaga atgaccgttc aagagttaag taaagaaggt
     2161 tttttagctt taggtaaaag tgttgaaatt ttagcacaaa atgagcattt agacgcgcac
     2221 aaaaatgcag taacttttcg tttagaaagc ttaaaatgag tcaaaaaatc ctttttatag
     2281 atagagatgg cactttaata gaggagccaa aaagcgattt tcaaatcgat actcttgaaa
     2341 aattgcgttt tgaaaaagat gctattccca ctcttttaaa actaaaaaaa tttggattta
     2401 aatttgttat ggtaagcaat caagacggtc ttggaacacc aagttttcca aaggaaaatt
     2461 ttgaaatcgc tcatgaaaaa atgcttgata ttttaaaaag ttgcggtata gaatttcaag
     2521 atatttttat ttgtccgcat tttgaaaatg aaaattgtgc ttgcagaaaa cctaaaaccg
     2581 ctatgttaga agagtatatc aaacacgaac tttatgataa ggaacaaagt tttgttatag
     2641 gagatcgtga gagtgatatg atcttggctt caaatttagg cgtgcgtggt ttaaaatacg
     2701 gcgaactttc ttggaaagaa atagaaaatg aaattttaag ttcttttaga agcgcgagtt
     2761 atcaaagaac tactaaagaa acagatataa aagtaaaggt atgcttaaat gggggtaagg
     2821 ttagcattaa aacaggtatt gatttttttg atcacatgtt agagcaaatc gctgtacatg
     2881 gaggtatagg gcttgaaatt tcttgtaaag gagatttgga aatcgatgag catcatagcg
     2941 ttgaagatgt agccttagca cttggagctt gtatcaaaaa agctttaggg gataaaatcg
     3001 gcattgcaag atatggtttt gctttaccta tggatgagtg tttggcaagt tgtgcaatgg
     3061 atttttgcaa tcgtccccat ttagtctata aagccaaatt taaaaaatct catttagggg
     3121 ctttaagcac agaaatgatc gagcactttt tttattcttt aagctatgct atgggcgtga
     3181 gtttgcattt aaaagttaaa ggcaaaaacg atcatcataa agccgaaggg ctttttaaag
     3241 cctttgcaaa agctttgaaa atggcagtaa aaatagaaag tgaaaattta gccagctcta
     3301 aaggagtgat atgaaaatca tcatcatcga tacagcctgt gcgaatttag catctttgaa
     3361 attttgtcta gatagattag gttttaatgc aactatcagt agggatttaa aagagcttga
     3421 aagtgcggat aagctttttt tacctggagt gggtaccgca aaagaagcaa tgaaaaattt
     3481 agaacaattt aatcttattg attttattca aaataccaaa aaacctttgc ttggtatttg
     3541 tttaggtatg caaattttag gaaatttttc tgaagaatta aatcaagaaa ccttaaaact
     3601 catagatttt acaactcaaa aatttaaagc taaagaaggc tttacttttc cacatatggg
     3661 atggaatgaa gtttatagct ctcatgcttt gtttaaaggc ttagaagggg cttattttta
     3721 ttttgtgcat agttattgtg taggacttgg gaaatacact atagcagatt gtgagtattc
     3781 gcaaaaattt agcgcaagcg taatgaaaga taatttttac ggagtgcaat ttcaccctga
     3841 aagaagtagc gaggctgggg aaattttaat ttcaaatttt attaaggata taggatgact
     3901 caaatcatac ccgcactcga tcttatagat ggcgaagtgg tgcgtcttgt aaaaggggat
     3961 tacgaacaaa aaaaagtata taaatacaat cccttaaaga aatttaaaga atacgaaaaa
     4021 gcaggagcga aagaacttca tcttgtagat cttacaggtg caaaagatcc tagcaaaaga
     4081 caatttgctt tgatagaaaa attagccaaa gaagtcagtg tcaatttgca agtaggtgga
     4141 ggtatacgct ctaaagaaga agttaaagct ttgcttgatt gtggagtaaa aagagtagtt
     4201 ataggatcta tggcaattaa agatgcgact ttatgtcttg aaattttaaa agaatttggt
     4261 agtgaagcta tagttttagc cttagatacg attttaaaag aagattatgt tgtggctgta
     4321 aatgcttggc aagaagcaag cgataaaaag cttatggaag ttttagattt ttatagcaat
     4381 aaaggcttaa aacacatact ttgcacagat atttcaaaag atggtaccat gcaaggagta
     4441 aatgtaagac tttacaaact tatccatgaa atttttccta atatttgcat tcaggcaagt
     4501 ggtggagtag cgagcttaaa agaccttgaa aacttaaaag gaatttgtag tggggttatc
     4561 gtaggaaaag ctttattaga cggagttttt agcgtagaag aagggataag atgtctagca
     4621 aattaagcta caaagaactt actttagaaa ttttaaaaca aagtgacaga cctttaagtg
     4681 ttaatgaaat ttggcaaaaa gctcttgaac aaggcttaga taaaaagctt tctagcatag
     4741 gacaaactcc aattgctact ttaggggcta ggatatatgt tgatataaaa gaattgcaac
     4801 acaattcttt gtttatcaaa gcttcccaaa aacctacaac tttttggcta aaagaaagag
     4861 aaaatgaact tttaaagctt gataataaaa atgaaattac taacgaaaaa caagaaaaaa
     4921 ataaatttca tgaaagagat ttacacccct tgcttgtaaa atttttatat gaaaatttag
     4981 attttaattt aaattgcaaa acaatttacc atgaacaaag caaaaagggt aaaggcgggg
     5041 aagataagtg gaattatcct gatattgtag gggtttattt tccttatgat gattatgaaa
     5101 aagagaccat aacactttta gaaaatatca aacaaaatag ttataagctt ttttcttttg
     5161 aacttaaaat tgctttaaat ttttcaaatt taaaagaatg ctattttcaa gctgtaagca
     5221 attctagctg ggcaaatgaa ggctatttgg ttgttttaca agaaattgat agcgaagttt
     5281 taagtgagtt aagacgctta aatcaaagtt ttggcatagg agtgataaaa cttgaaaaag
     5341 atatttcaaa ttctcaaatt ttaattagtg caaaagaaaa agaacttgat attcaaacac
     5401 taaatatgct gatcaataaa aatccaaatt ttaaagaatt tattgatgat ataaacaaac
     5461 aaattaaagt gggcaaagaa gcaaaaattc aagctaattt tgatgaaatt aaaagcgatg
     5521 aagaaatgga aaaatatctt aaagaaaaat gtattttgga gaaataaatg cttacaaaac
     5581 gcataattgc atgtttagat gtcaaagatg gcagagtagt aaaaggaaca caatttaaaa
     5641 accataaaga tatgggagat atcatagagc ttgctaggta ttattctcaa aatggtattg
     5701 atgagcttgt tttttatgat attgctgcaa gtgctagaaa agaacgcata tcaagagaat
     5761 gggtaagtga agtagcaaaa aatatcaata tttctttttg tgttgcaggg ggtattaaaa
     5821 gcgaagaaga tgcagctgaa cttttggcta atggggcaga taaaatttct atcaattctc
     5881 ctgctttaaa tgatccaagc ctaatcacac gccttgctaa aagctttggc gtgcaatgcg
     5941 tagtagtagg gattgatagt tttaaagatg aaaatggaaa tttaaaagta tttcaataca
     6001 caggggatga aaaaacaagt aaacatagtg gaaaaagcac tttagaatgg gttaaaaaag
     6061 tgcaagatct aggtgcaggc gaaattgttt taaatatgat gaatcaagat ggtgttaaaa
     6121 atggctatga tttagaacaa ttagaagctg tatataaaat ttgtaaagta cctttaatcg
     6181 caagtggggg agcgggaaaa atggaacatt ttttagaagc ttttaaacta ggtatagatg
     6241 gggctttagc tgcttctgtt tttcatcaaa aacttataga cattaaagaa ttaaaaattt
     6301 atcttaaaaa tcaaggctta agtataagga tataatatgc aaaatttcaa agaacttaat
     6361 gaaaaaatcg cttggcaaaa agtggataat cttttacctg tcatcatcca agatgcaaaa
     6421 acttgcgaag ttttaatgct aggctttatg aataatgaag ccttagaaaa aagcttagaa
     6481 agtggcaaag tagtcttttt ttcacgcaca aaacagcgtc tttggatgaa gggtgaagaa
     6541 agtggaaatt tcttaaatat catagattta agcttagatt gtgataatga cacgctttta
     6601 attttagcaa atcctgtagg gcctacttgt catacgggcg atatttcttg ttttgaaaaa
     6661 atttctaaaa atgcagattt tgtttttcta gccagacttg aaaaacttat taatgcacgc
     6721 aaaaatgccg atgaaaatac ttcttataca gcaaaacttt tcaaaagtgg tacaaaacgc
     6781 atcgcacaaa aagttggtga agaaggcgta gaaacagctt tagcagcgac agtaaaagat
     6841 aaagaagagc ttatttgtga agcagcggat ttaatgtatc atttaagtgt tttacttgca
     6901 gatgcaaatc ttagtttctc agatgtgatt tcaaaattaa aagaaagaca taaagcttaa
     6961 agctttatgt aaaataaatt tatatcaatg caaggcttca ttaagtttga ctgctttttt
     7021 atttaaagct actatcatag caccacttat agaatcttga cggaaatgta gcccatttaa
     7081 acctttaagc tctaagcctt tgtaaatttc tttatcaaaa ttaaaataag gattaagttt
     7141 agcaagttct tcggcatctt tgagtaaaaa tttcgttcct tctagcactg caatacctgc
     7201 atcaactata caattatccc ctaaaggaat tcctgtcact gaattagccc ctaaaagaca
     7261 agccttgcct acgcttatag cattgccact tgttccactt aaaacaccta aaatcgaagc
     7321 tccgccacct acatcagaac cttctcctac tatagcactt gaactaatac gcccttcaac
     7381 catacaagct cctgttgtac ctgcattaaa attcacataa cttgcccctg gcatgatggt
     7441 tgttcctgct gctaaagacg cacccattct tactttagaa ctttctaaaa ttcttgtatt
     7501 atcctcaggg ataatatgtg ctaaaaatct tgggaattta tcaacaaaat cgatttttgg
     7561 atattgattg ctcattttta aacgcatttc atttgctctt aaatactcaa gctcgatagg
     7621 cttatcatca ctccaagcta cattgcttaa aagtccaaaa gctccattta aattgatact
     7681 tcttaaaggt acttttttag tagaaagcaa ataaagtttt agataaatac tttctacact
     7741 taaaggttct ttatcttcaa aaagacaaac aaaagaaaat tcatcgtctt taaatttatc
     7801 tttgataatc tttaataaat caatattttg atgcccatct tcttctaaaa aaggtttaaa
     7861 acaagaaagt gcaaaatcaa tatcttctaa tttcaaagtt tgcacaaact cactcgcatt
     7921 aaaatcaatc tccacgcccc tttgcataaa agcttcaagc atgattgccg ctgagccaaa
     7981 attttgctca tagttaatca aagcaaaact tgcttgtaag attttatttt tatttaactg
     8041 tcctctatca agccttgcta taccaaaagc tttaggtttt ttatagccac ttttttgctc
     8101 gatttgtttg attaaaagta aaaaatcttc tttagtatta atcattttct tttccttatc
     8161 cacttaattt ttaatgcgaa cacgcacttt ttccattcat cacaggttgt atagcagaat
     8221 tatccgcacc accttcattg ttaatttttt ctataaagct ccaaattttt tcagccgcca
     8281 ttaaataacg ctttgaactc acactttcag ggtgataaaa actcacaggc ttgccttcat
     8341 ctccaccttc tcttactatc atttctatag gaatttgtgc taagacttca cttttatagg
     8401 cttttgccat atcctcagcc gttcctttgc caaaaatatc atactcttta ccgttatcag
     8461 gacataaaaa tccactcata ttttcaatca cacccgctat aggaatgtga agtttattaa
     8521 acatatctaa agctctttta ctatcgtcta aagatacggt ttgaggcgta cttacacaaa
     8581 ctcctgcagc aataggaatg ctttgtgcag aagtaatttg cgcatcgcct gttcctggag
     8641 gcatatccaa aaacaataca tcaagctcag gccaaattac atcagctaaa agttgctcaa
     8701 ttgctttcat gatcatagct ccacgccaca taaggccttg accctcttcg atcaaaaccc
     8761 ccatactcat catataaaca ccatgagtta aaataggctt taatctctgc cctactactt
     8821 caggctgagt tttggtttca cctagcattc ttggaatatt tggcccataa atatccgcgt
     8881 ctaaaatacc tactcttttt cccattttag ccatggaaat tgctaaattt actgtagttg
     8941 tagatttacc cacaccacct tttccacttg aaaccatgat gaaatttttt acttgtggag
     9001 cgatattttt tccacttctt gaattacttt tttcttcagg aatttttgga gtaatgatat
     9061 taagttcaat attttttaaa gccaaactcg ataaagcttc aatagtattt ttacgaattt
     9121 cattagctac ttcaggattt gctgaaacga tttctatatc aatgaataca ccatcatctt
     9181 gaattttaat atcttttaca aagttaaaac tcactatatc cttttcaaaa ccaggatatt
     9241 ttacagtttt taatttctct aaaatttgtt ctttcatatt ttttccttgt cttttaaaaa
     9301 aatcaatttt actaataaaa tgataaaatt tagcttttta taagtgtata atatggtaac
     9361 attataaaaa ccaacaatat taaaaagagg aatgaaaaaa tgagtgaaat gagcctcatt
     9421 atgttagcag ctggaaattc tactcgtttt aatacaaagg taaaaaaaca atttttacga
     9481 cttggaaatg accctctttg gctttatgca acaaaaaatt taagctcttt ttatcctttt
     9541 aaaaaaatag ttgttacctc tagtaatatc acttatatga aaaaatttac caaaaactat
     9601 gaattcatag aaggtggtga taccagagca gaatccttaa aaaaagcctt agagctcata
     9661 gatagcgaat ttgttatggt aagtgatgta gcaagggtat tggtgagtaa aaatttgttt
     9721 gatcgtttga ttgaaaattt agataaagca gattgtatta cccctgcttt aaaagttgca
     9781 gatacaacac tttttgacaa tgaagccttg caaagagaaa aaatcaaact cattcaaacc
     9841 ccgcaaattt ctaaaaccaa attgcttaaa aaagccttgg atcaaaacct agaatttaca
     9901 gatgatagca cagctatagc tgcaatgggt ggaaaaattt ggtttgttga aggtgaagaa
     9961 aatgcaagaa aactaacctt taaagaagat cttaaaaaac ttgatttgcc tacacctagc
    10021 tttgaaattt ttactggcaa tggttttgat gtgcatgaat ttggagagaa tcgccctttg
    10081 cttttagcag gagtgcaaat tcatcctact atggggctta aagcacacag cgatggagat
    10141 gttttagctc actctttaac cgatgcgatt ttaggtgctg caggacttgg agatatagga
    10201 gagctttatc ctgatactga tatgaaattt aaaaatgcca actccatgga gcttttaaaa
    10261 caagcttatg ataaagtcag agaaataggt tttgaactca ttaatataga catttgcgtc
    10321 atggcacaaa gccctaaact taaagacttt aaacaagcta tgcaaagcaa tatagctcat
    10381 actttagatt tagatgaatt tagaatcaat gttaaagcca caacaacgga aaaattgggt
    10441 tttattggaa gaaaagaagg tatggcggtg cttagtagtg taaatttaaa atattttgat
    10501 tggacaagat tatgaaagtt ttaattattg aaaatgaaat ttatctagcg caaagcatta
    10561 gcattaaact aagtgatgct ggatatagct gtgaaattat taactcgttt gatgaataca
    10621 atggtgaaaa atactatgac attatactgc tttctacaaa tactaataat tttctaaaag
    10681 ccgtaggtca gtttaaacat agtattatta ttttgcttat ttcttatata agtacagata
    10741 cagtttcaaa tcctttgaaa ttaggtgcta gtgattatat tcaaaaaccc tttatgatag
    10801 aagagctgat tagaaaaata aagcattatc aggattttag aaaactttca atccttaata
    10861 aagcttatca aagctatatc aaatcaagat tagaaacaat caaaattcca gagtataatt
    10921 ataaaaaatt aaaacttcca ttgatattaa aatccaacaa gcaaagcagt gctgatgctt
    10981 ttgtttttaa ttatgcaaat gaatgtgaca ttactctttc ttttattgat ttaacatcta
    11041 caaattcagt tgaaaaagtt atgaaacttc ccacagaaaa caatctttta tttttgagta
    11101 attttcaagc attaaaagca gcagaaaagg aaaaactcct agattttata caaaacaaaa
    11161 atgttatttt gcataccaat tcaaatacag atgatttaaa aataaactgc attaatttaa
    11221 atgataatga aaaaaatatc aatagcaatg aaattttaac tatagatgag tatgtaaaat
    11281 atgttattat aaattaccaa aatatatttc ctgatactga tctttcaaaa aaattaggca
    11341 tttcacgtaa atctttatgg gaaaaaagga agaaatatga aatcagcaag aaaaaataaa
    11401 aacattatca tagatcaaaa tgaatttggc atcttatcac ttattaaaga aggtttgcta
    11461 ggcacttgca ctcatttaat gaatgaaaaa gaagtcaatg aaatcattaa atcaggaaaa
    11521 tttaaaggag aaagctttcc ctatccctta agctttgcac caaaaaatgc cgaagaagca
    11581 ctaaatgata taaaatctgg cgatagaatc gatctcatgc tagatgaaaa agtagtagga
    11641 catatagatt ttaaaagcca atttaaaaat aataaaaatt tttctgatat tttcagtcct
    11701 aacacttgct ctttagaaga catgggaaca acttgcataa gtggaaaaat agaaatttat
    11761 aattctcaaa ttgaaaaaat aaaagaaaat tttcaacaaa tcaaaaacaa tcttaatgca
    11821 caaaaaatta ctgctatagt ttcaagtttt gatcctttgc atcgtgccca tgaaagaatg
    11881 tttcgttgga ctattgataa agcagattta gttgtaattt ttcttgtaga atcttttgat
    11941 gtaaatgggt ttgaattcga acttaaagaa gcatatttga aaaaatttat tcaaaactat
    12001 cttccaccgg atagaatttt catttttcca ttaaaaaata ttaatatttt tcacgctcat
    12061 ttaaatcctg gcttagaaag tattatcgca aaaagtctag gttgtaccaa actagtagta
    12121 ggacaaaatc atacaggact tggaatgttt tatgatgata accaaccaaa aaccatactt
    12181 gatgattttt ccaaggacta tggcatagaa gtgatcgttt tgcctgaatt tgtattttgc
    12241 gatcaatgtc gcatgattgt tagcacaaga tcttgccctc atggttgtca tcaccatttg
    12301 cactataatt ctcagtcttt aaaagattta ctaagagcgg gtatcattcc tccagcaatt
    12361 ttcatacgca aggaagtatc tagtgttatt ttaacttctc tttttccaaa tagattaaaa
    12421 aatatgcaaa aaatttataa tgagcttttt ccaactgatg gaattttaga atacaaaaat
    12481 gatgaagaat tttatcaaaa acttttagaa attcatcaaa tgtcttatat ggtgtaataa
    12541 aatgcaaaaa ttatttttaa ctttttttta ttcaggttct gtaaaaaagg caagtgggac
    12601 ttttggtact atcgctgctt taatacctgc tttttttata cttaaatatc tcgggattaa
    12661 tactttgttt ttactaagca ttttaatttt tgttgcaagt attcgtgtta tagatgatta
    12721 tgaaaaaaaa acaggaattc acgatgacaa acacatagtt atcgatgagg ttgctggagt
    12781 ttttcttgct tgtgctattg cagcaagtgt tgaaaactcg atagtcaatt ttattttggc
    12841 ttttgtttta ttcagactct ttgacattac aaaaccttct attattggca agatagataa
    12901 aaaagtcaaa ggcggactag gtgtaatgct tgatgatatg ttagcaggat tgtttgctgg
    12961 acttttaagt gcggtaattt atggattttt acttaaattt aatttagttt tttgggatat
    13021 aaatttaaaa gatttatttt gaa
//
LOCUS       DAPIWQ010000036        12735 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.036, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000036 DAPIWQ010000000
VERSION     DAPIWQ010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12735)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12735)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12735
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.036"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            122..907
                     /locus_tag="RJ267_000730"
     CDS             122..907
                     /locus_tag="RJ267_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDV7388606.1"
                     /translation="MEITDLPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAVFGSYINYKKKNLNLKDGIMIGFGGLIGASFSGMLLKALSDVALTS
                     VFLAVSCIFFIKYAFGIKENIVQNQRSVWVKNVILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASVSGIISFSNSGVIDSEVIHKGILVGIASMVGV
                     FIGIKIIEKMHISAHRKILLCVYALSILGTTHSLLNKLNFINF"
     gene            980..3805
                     /gene="uvrA"
                     /locus_tag="RJ267_000731"
     CDS             980..3805
                     /gene="uvrA"
                     /locus_tag="RJ267_000731"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HDV7388607.1"
                     /translation="MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHRCGQKISSMSVSDIVSEILKFPKGAKIIIYSPLIREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLQESFGEIEIEVLNHEEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDENLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKIPFMQLNEVQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEY
                     MSEKICKDCGGHRLKPESLAVKVAKKSLGEILDMSIEDSTAFFADEKNFSYLSEQQKL
                     ISKPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCGGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVE
                     KVAKEHKKTRSYTGYYLDLELKNTQKS"
     gene            3810..4253
                     /locus_tag="RJ267_000732"
     CDS             3810..4253
                     /locus_tag="RJ267_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDV7388608.1"
                     /translation="MFDFLYNDISYLGLFMVCFLSSTLLPLASEAFVLGFIKLDFNPN
                     LVLIVATLGNTLGSLSTYALAYFGKEKILEKYFSKSLKKLENFNANFAKFGSIFAFFT
                     FLPLVGDLFALGLGFAKYSFLKTIFFILLGKLSRYTFIIFIANSF"
     gene            complement(4209..5216)
                     /locus_tag="RJ267_000733"
     CDS             complement(4209..5216)
                     /locus_tag="RJ267_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HDV7388609.1"
                     /translation="MRLILDTDIGNAIAGANTDDGLALALILSSKEIKLEMLSTVCGN
                     VPSLVAYSVAKDLFQRLNLNIPVYLGANEALKEPSKAWRQRLDESVKNFKLEYLWENI
                     KSPEILENINPDAIFKMGELVSKNPKEISICAIGPLTNIAMTMKIFKDFDINLKELFI
                     MGGSFDMPYYTKDTNFGFDPEAASIVLNSRAKITLIPYNATMQTLLTHEDLKELQGKN
                     ILCDFIVETLGVWIDYASKTRGTKGTWIHDALTIACALDSSIADFDECYADVICDSSL
                     ARGMSWRCFREPKMSMGVDLSTKNCVKILKNVDNARLLKLIKERLLKGVCYENYESIT
                     T"
     gene            complement(5213..6574)
                     /locus_tag="RJ267_000734"
     CDS             complement(5213..6574)
                     /locus_tag="RJ267_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HDV7388610.1"
                     /translation="MTNQQIDGIADKNFNTPEGRKVFKKAVFSCWLGTAMEYADFALY
                     GLAAATIFSEVFFPEQTPVIALLLSFVTYGIGFIARPIGALFFGHLGDKHGRKNVMMA
                     TIALMGISTTLIGFIPSYAVIGVWAPICLVALRFMQGFGAGAELSGGTVMLAEYAPSK
                     RRGLVSSVIALGSNSGTLLASFVWLLMVQMDEASFKEWGWRVPFMGSILIALFAVYIR
                     FHVKETPVFEKQKNEMMKLRLNNEKHMKKDERSFWQRSRAFWTMVGLRIGENGPSYLA
                     QGFIVGYVTKILLLDKSVATTAVMIASLVGFLVIPLAGYLSDKFGRCITYRMFCLLLM
                     IYAFPAFMLLDSKNEIIVILTIIVGMSLASLGIFGVQAAWGVELFGVKNRYTKMAFAK
                     ELGSILSGGTAPMVASALLAYYGSWWPIATYFVLTAGIGFVTTFFAPETRGRDLNKIE
                     DAI"
     gene            6738..9377
                     /gene="polA"
                     /locus_tag="RJ267_000735"
     CDS             6738..9377
                     /gene="polA"
                     /locus_tag="RJ267_000735"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HDV7388611.1"
                     /translation="MKTLTIVDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYSL
                     KNEYKSDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISV
                     SQEGYEADDIIASFVKTCENRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAA
                     CLEKYGVKPNQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRNLLLEGKENAFLSKKLASLYDNLEVQNLIEKATYPDEEPLLKILEILEHYELN
                     TLLKKLRQNPDNKDKNLGFKATLVQDENKLFEILNTLDKESIIAFDTETTGLDTKEAK
                     IVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAIEVIFNHFVIGHNLKYDFKII
                     QNNFDLNLPQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDT
                     NALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQMGDILFEKLKLPSGKKGKTGYS
                     TDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTA
                     TGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKL
                     LNAFANDEDIHARTAIMIFGESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEANLAK
                     SYIEKYFENFTSIKKYFEKVKNEAKQNGFIVTLSGRKRYFDFENAKPMQIAMYERESI
                     NSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIME
                     NIVKLKVKLKTSSSIAKNWGDLK"
     gene            9393..10169
                     /gene="motA"
                     /locus_tag="RJ267_000736"
     CDS             9393..10169
                     /gene="motA"
                     /locus_tag="RJ267_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HDV7388612.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVVHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKVVFKGSGVNLPERIAQLIEFAIIARRDGLLALESRTSE
                     IENEFLKNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIVFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGKKLKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPRISQFDKG"
     gene            10172..10915
                     /gene="motB"
                     /locus_tag="RJ267_000737"
     CDS             10172..10915
                     /gene="motB"
                     /locus_tag="RJ267_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HDV7388613.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRL
                     QAALDQSDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY
                     TDNSDSIIRSYELAYQRAENVLKYFIEGGANLKNISIKSYGLNNPINGNPQTLENNRV
                     EIYFKVDTADTSTQKSVLELINKIGTKAP"
     gene            complement(10921..12009)
                     /gene="flhB"
                     /locus_tag="RJ267_000738"
     CDS             complement(10921..12009)
                     /gene="flhB"
                     /locus_tag="RJ267_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HDV7388614.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTI
                     TLFMMSFMGERIVNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLIILAPIVLSIMIAG
                     VLGNIMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFI
                     VLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTGKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKGN"
     gene            complement(12128..12724)
                     /locus_tag="RJ267_000739"
     CDS             complement(12128..12724)
                     /locus_tag="RJ267_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HDV7388615.1"
                     /translation="MIVTKKALDFTAPAVLGNNEIVQDFNLYKNIGPKGAVVFFYPKD
                     FTFVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLV
                     ADLTKQIARNFDVLYAEAVALRGSFLLDADGTVRHAVVNDLPLGRNIDEMLRMVDTML
                     FTNEHGEVCPAGWNKGDEGMKANPKGVAEYLGKNEAKL"
BASE COUNT         4600 a         2104 c         2012 g         4019 t
ORIGIN      
        1 tttacgatgc ttaaagttac caaaaaatat tctattgtta taaaaaaact aagataatac
       61 ttagcttaat aagataaaat tattccgtat ttgaaatatt taatattttt taggaaaagc
      121 tatggaaatc acagatttac cttatctaat cataggaatc atttcaggta ttgcttctgg
      181 actttttggc attggtggag gtatgattat cgttccttct atgttcgcac ttggagcaag
      241 tgctcaccat gctatcggaa tttcagtatt gcaaatgatt tttgcagcag tttttggctc
      301 ttatattaat tataagaaaa aaaatctaaa tcttaaagat ggtattatga taggttttgg
      361 agggctcata ggagcaagct ttagcggaat gcttttaaaa gctttaagtg atgtagctct
      421 tactagcgta tttttggcgg taagttgtat attttttatc aaatatgctt ttggaattaa
      481 agaaaacatt gtgcaaaatc aaagaagcgt ttgggtaaag aatgtcattt tatttattgc
      541 tggagctttt actggtattt ttgctatttc tttgggaatt ggtggcggac ttttaattgc
      601 tccgatttta gcttattttt taggctatga tagtaaaaaa gttgtttcct tatccttgtt
      661 ttttgttatt tttgcttcag tctctggtat tatatctttt tcaaattctg gagttataga
      721 ctctgaagtt attcataaag gaatactagt aggtatagct tctatggttg gagtttttat
      781 aggaattaaa atcatagaaa aaatgcatat ttcagctcat agaaaaattt tactttgcgt
      841 atatgcctta tcaatacttg gaaccaccca ctctttgctt aataagctaa attttataaa
      901 tttttaactt ggatttatcc aagttctttt aatattatta tgctaaaatc ttaaatttat
      961 ttaatgttta ggaaagacta tgaacgatac cataaaaatc attggcgcaa gagaaaataa
     1021 cctaaaaaat atccaccttg aaattcccaa aaacaaactc attgttttta caggactgag
     1081 cggaagtgga aaatcaaccc ttgcttttgg aactctttat gctgaaggac aacgccgtta
     1141 tatagaaagt ttaagtgctt acgccagaca atttttagat aaggtaggca aacctgatgt
     1201 cgataaaatc gaaggtttaa ctccagccat tgccatagat caaaaaacta cttctaaaaa
     1261 tccacgctct actgtaggaa ccatcactga aatttatgat tatctaagac ttttatacgc
     1321 aagagttggc attcaacatt gtcatcgatg tggacaaaaa atttcatcta tgagtgtaag
     1381 tgatatagtc agtgaaattt taaaatttcc aaaaggtgca aaaatcatca tctactcccc
     1441 actcatacga gaaaaaaaag gaacttatgc agatttgctt gaaaatttac gcaacaaagg
     1501 ctatgtaaga gctcaaattg atggagtttt ggtaagactt gatgaagaaa ttgaactagc
     1561 caaaaccaaa aaacacacca ttaaacttgt catagataga cttgaaattc aagaagattt
     1621 actttctcgt cttgcaagcg atatagaaaa aggtttacag gaaagctttg gagaaataga
     1681 aatagaagtt ttaaatcatg aggaaataaa ccttaataaa cactatcatt ttagcgagca
     1741 ttcagcttgt tttgattgta aaatttcctt tgttccactt gagcctttaa gcttttcttt
     1801 taattctcca aaaggagcat gtgaagcttg cgatggactt ggaattcgtt atactttaga
     1861 tatgaaaaaa atcatcgatg aaaatttaag tctcgaaaac ggtgctgtta aaatcatgta
     1921 tggttttaat aaaagttatt attataaatt cctaatcgcc ttttgcgaac aaaatgaaat
     1981 tcctatcaaa atacctttta tgcaattaaa cgaagtacaa aaacgtcttg tattgtatgg
     2041 taatgccaaa actatagaat ttctttggaa aagaaatcgc ctaaaacgca cttttgaagg
     2101 cgtggttaaa atggcttatg aaatgctaaa agatgaaaaa gatttagccg aatatatgag
     2161 tgaaaaaatt tgtaaagact gcggtgggca tcgtttaaaa cctgaaagtt tagccgtgaa
     2221 agtagcaaaa aaaagcttgg gtgaaatttt agatatgagc atagaagata gtacggcctt
     2281 ttttgcagat gagaaaaatt tttcttattt aagcgagcaa caaaaactta tttctaaacc
     2341 tatcctaaaa gaaatcaacg aaagattgtt tttcttgtat gatgtggggc taggttatct
     2401 ttctttaggg cgcgatgcaa gaacgattag tgggggtgaa gcacaaagaa tccgcatagc
     2461 ttcacaaatt ggcagtggtt taagcggagt gatgtatgtc ttagatgagc ctagcatagg
     2521 acttcatgaa agagatactg caaaactgat taaaacttta agaaatttac aacaaaaggg
     2581 caatacccta attgtcgtag agcatgataa aatgaccata gaagaagcag attttattgt
     2641 agatattggt ccaaaagcag gaaaatttgg gggtgaggtt gtatttagtg gaacttataa
     2701 agaactttta aaaagcaaaa gcgaaactgc actttatatg aatggtaaaa aacaaatttc
     2761 acaacttcaa aacagaacac agaaagaatg gcttgagctt aaaaatgtaa atattaacaa
     2821 tatccaagat ttaagcgtaa aatttccttt gcaaaattta gtcgctataa caggagtttc
     2881 aggttctgga aaaagctctt tgatacttca aaccctactt ccttttgcac aagaggaatt
     2941 aaaccgtgcg aaaaaagtta aaaaacttgg cggagtacaa atagaaggac ttgaaaaact
     3001 tgataaagtc atttatcttg atcaaagccc aattgggcgc acaccacgtt caaatcctgc
     3061 cacctataca ggtgctatgg atgaaatcag aaatcttttt gccgccacta aagaagccaa
     3121 aatgcgtggt tataaagccg gacgcttttc ttttaatgtc aagggtggaa gatgtgagaa
     3181 atgtagcgga gatggagaaa tcaaaataga aatgcatttt ttacctgatg ttatggtagt
     3241 ttgtgatact tgcgggggca aacgctacaa tgatgccacg ctagaaatca aatataaagg
     3301 caaaaatatc agtgaaattt taaatatgag tgttttagaa gcgagtgaat tttttacagc
     3361 cgttcctaaa atcaaacaaa aattagatac tctagtaaaa gtgggtttag attatctaac
     3421 tctaggacaa aatgccacca ccttaagtgg aggtgaagca caaagaatca aacttgctaa
     3481 agaactaagc cgtagcgata caggaaaaac gctttatata cttgatgaac ctacaacagg
     3541 actgcatttt gaagatgtca ataaactcat cttagtttta caacatttgg ttgatcttaa
     3601 aaattctgtt tttgtgatag aacataattt agatgtgatt aaaaatgctg attatatcat
     3661 cgatatgggg cctgaaggcg gagttaaagg tggaaaagtt ataagcacag gaagcgtgga
     3721 aaaagtcgct aaagaacaca aaaaaacccg ttcttacaca ggatattatc tagacttaga
     3781 gcttaaaaat acacaaaaat cataatttta tgtttgattt tttatataat gatattagct
     3841 atttggggct tttcatggtg tgttttcttt caagcacact attaccctta gcaagtgaag
     3901 cctttgtttt aggctttata aaacttgatt ttaatccgaa tttggtactt atcgtagcca
     3961 ctttgggtaa taccttagga agtttaagta cttatgcttt agcgtatttt ggaaaagaaa
     4021 aaattttaga aaaatacttt agcaaatcct tgaaaaaatt agaaaatttc aatgctaatt
     4081 ttgctaaatt tggaagtata tttgcttttt ttactttttt acctttagtg ggagatcttt
     4141 ttgccttggg acttggtttt gcgaaatatt cttttttaaa aactatattt tttatcttac
     4201 ttggaaaatt aagtcgttat actttcataa ttttcatagc aaactccttt taaaagcctc
     4261 tcttttataa gttttaaaag ccttgcatta tctacatttt ttaaaatttt aacacaattt
     4321 ttagtgctta aatccacccc catactcatt tttggttctc taaaacaacg ccaactcata
     4381 cctcttgcca aagaactatc gcaaataaca tcagcataac actcatcaaa atctgcaata
     4441 ctagaatcta atgcgcaagc tatcgttaaa gcatcatgta tccaagttcc ctttgtacca
     4501 cgtgttttag aggcataatc aatccaaaca cctaaagttt caacgataaa atcacataaa
     4561 atattcttac cttgcaactc ttttaaatcc tcgtgtgtta ataaagtctg catggttgca
     4621 ttataaggta tgagtgtaat tttagctctt gaatttagca ctatactagc cgcctcagga
     4681 tcaaaaccaa aatttgtatc tttagtgtaa taaggcatat caaaactgcc gcccataata
     4741 aaaagctctt taagatttat atcaaaatct ttaaaaattt tcatagtcat agcgatattt
     4801 gtcaaaggtc ctatcgcaca aatagaaatt tctttaggat ttttactcac caactcaccc
     4861 attttaaaaa tcgcatcagg atttatattt tctaaaattt caggactttt tatattttcc
     4921 caaagatatt caagtttaaa atttttaaca ctttcatcaa gtctttgacg ccaagcttta
     4981 cttggttctt ttagggcttc attcgctccc aaataaacgg ggatatttaa atttaaacgt
     5041 tgaaataaat ccttagccac actataggca acaaggcttg gaacattacc gcaaactgtg
     5101 cttagcattt caagtttgat ttctttagat gacaaaatca aagcaagtgc taaaccatca
     5161 tcagtatttg ctcctgcaat agcattgcct atgtccgtgt ctaagataag tctcatatcg
     5221 catcttctat tttatttaaa tctctacctc tagtttctgg cgcaaaaaat gtagtcacaa
     5281 aacctatacc tgcagttaat acaaaatatg tcgcgatagg ccaccaagag ccataatatg
     5341 caagcaaagc agaagccacc ataggcgctg ttcctcctga aagaatagaa cctagctcct
     5401 tagcaaaagc catttttgta taacggtttt ttaccccaaa aagctccaca ccccaagccg
     5461 cttgcacacc aaaaatccct aaagatgcta aagacatacc tacaataata gttaaaatca
     5521 caataatttc atttttacta tctaaaagca taaaagcagg aaaagcataa atcattaaaa
     5581 gcaaacaaaa cattctataa gtaatacatc ttccaaattt atcacttaaa taacccgcca
     5641 aaggaataac taaaaaccct accaatgaag ctatcattac cgctgtagta gctactgatt
     5701 tgtctaaaag taaaatttta gtcacataac ctacaataaa accttgcgca agataagaag
     5761 gtccattttc gcctattctt aagcccacca tagtccaaaa agcacgactt ctttgccaaa
     5821 aacttctttc atcttttttc atatgctttt cgttattaag acgcaatttc atcatttcat
     5881 ttttttgctt ttcaaaaaca ggggtttctt tgacatgaaa acgaatatat acagcaaaaa
     5941 gagcgattaa aatacttccc ataaaaggaa ctctccagcc ccattcttta aaacttgctt
     6001 catccatttg taccatcaaa agccatacaa aagacgcaag caaagttcca ctatttgatc
     6061 ctaaagcaat cacagaagaa acaagccctc ttctcttgct aggagcatat tctgctagca
     6121 taactgttcc acctgaaagt tcagctcctg cgccaaaacc ctgcataaaa cgtaatgcaa
     6181 ccaaacaaat aggcgcccaa acaccaatca ctgcataact tgggataaaa cctatcagag
     6241 tagttgaaat tcccattaaa gctattgtag ccatcataac attttttctt ccgtgtttat
     6301 cacctaaatg accaaaaaac aaagccccaa taggtcttgc aataaaacct atgccataag
     6361 ttacaaaact aagcaaaagt gcaattactg gagtttgctc aggaaaaaat acttctgaaa
     6421 aaattgttgc agctgctaaa ccataaagtg caaaatctgc atattccata gcagttccca
     6481 accagcaaga aaaaactgcc tttttaaaaa cttttctacc ttcaggtgtg ttaaaattct
     6541 tatctgcaat tccatcaatt tgctgatttg tcattacatt ttccttacat tattcatata
     6601 aaatttttac tctactcgat attatgacta aaaattgaag tattttcgct taaatatctt
     6661 taaatttcga gacattttaa gcaaaatttt gaaataatat aaccaaaaaa tatattttat
     6721 caaaagaaga aattattatg aaaactttaa ctattgttga tacttttgga ttttttttca
     6781 gactttacta cgcattaaaa ggttttaaaa attcacaagg acaagctagt ggaatgatta
     6841 gcggttttgc aaattttatt tatagcttaa aaaatgaata taaaagtgat tatattgttt
     6901 ttgcattaga ttccaaagga aaaacttttc gtagcgaaat tgatccaaac tataaacaaa
     6961 atcgcactcc accgccacct gaacttctag aacaaattcc aatttgcata aagatgatag
     7021 aaaaaatggg tttcataagc gtttctcaag aaggttatga agctgatgat atcattgctt
     7081 cttttgtaaa aacttgtgaa aatagagata tttttgtacg tattatcact caagataaag
     7141 atctttatca actcataaaa gatggtaaaa caagcattta cagtcctatt tctaaaaacg
     7201 actatgatga agcagcgtgt ttagaaaaat acggagtaaa acctaatcaa atcagagatt
     7261 ttttagctct ttgtggggat agttctgata atattccagg cgttaaaggt ataggtgcaa
     7321 aaggagctaa aaccttgctt gatgagtttg gtagcataga gggaatttat gaaaatttaa
     7381 ccctagtacg taacgaaaga agtcgtaact tgcttttaga gggtaaggaa aatgcatttt
     7441 taagcaaaaa attagcttct ttgtatgaca atttagaagt acaaaatctc atagaaaaag
     7501 ccacttatcc tgatgaagaa cctcttttaa aaatacttga aattttagaa cattacgaac
     7561 ttaatacttt gcttaaaaaa ctgcgtcaaa atcctgataa taaagataaa aatttaggtt
     7621 ttaaagccac tttagtacaa gatgaaaaca aactttttga aattttaaat acccttgata
     7681 aagaaagtat tattgctttt gataccgaaa ccacaggact tgatactaaa gaagcaaaaa
     7741 ttgttggttt tagtttttgc atgaatgaaa atgaagcctt ttacgtgcct ttaactcata
     7801 attatcttgg agtaggtgag caaatctcat tgcaaagtgc caaaaaagct atagaagtaa
     7861 tctttaatca ttttgttata gggcacaatc tcaaatatga ttttaaaatc attcaaaaca
     7921 attttgactt aaatttacct caaaaatacg cagatacaat gattttggca tggcttaaaa
     7981 atccttcttt aagagtaaat atggatgatt tagccttaag actttttaat tacgaaacct
     8041 tgcattttga aagccttgtt aaaaaaggag aaaattttgc aagtgtagaa cttgaaaaag
     8101 cttgtaaata cgctgcagaa gatgcttata tcactttaag attttatctt tattttttaa
     8161 aaaatcttga aactccttta ttagaacttg ctaaaaactg cgaatttgat ttcattaaaa
     8221 tcattatgat gatggaagaa aatggcataa agcttgatac aaatgcactt gaaatcctta
     8281 tgaaaaaatt tgaaaatgaa atcaaaaatt taagtgaaga aatttatact ctttgcgagg
     8341 atagatttaa tctaaattca cctaaacaaa tgggtgatat actttttgaa aaactcaaac
     8401 tcccaagcgg aaaaaaagga aaaacaggat attctaccga tgaaaaagtt ttaaatatac
     8461 ttttagataa acatcctgta attgctaaaa ttttagatta tagagaactt gccaaacttt
     8521 attccactta ttgcgaacct ttgttaaaac tagcgttaaa agataaaaat tcacgcattt
     8581 attcaagttt tttacaaact ggaaccgcta caggacgtct ttcatctaag gatccaaatt
     8641 tgcaaaacat ccctgcacac ggacaatatg caaaagatta taaatcttgc tttgtagcta
     8701 aagatggatt tagttttatc tctcttgatt attctcaaat cgaacttaga atacttgcac
     8761 attttagcga agatgaaaaa cttttaaatg cttttgccaa tgatgaagat atacacgcaa
     8821 gaacagcaat aatgattttt ggtgaaagca attatgaaac cagaagtgtt gcaaaaagta
     8881 taaattttgg acttatttat ggtatgggtt ataaaacctt aagtcaaaat ttaaaaatag
     8941 aagctaattt agccaaatct tacatagaaa aatattttga aaattttact agcattaaga
     9001 aatattttga aaaagttaaa aacgaagcta aacaaaatgg ttttattgtt actttaagcg
     9061 gtcgcaagcg ttattttgat tttgaaaacg caaaacctat gcaaattgcc atgtatgaaa
     9121 gagaaagcat taattcaatc ttgcaaggct cagcagcaga tgtaatcaag cttgcaatgc
     9181 tagaaatcaa taaagaatta aatgaagata aaaagcttat tttacaaatt catgatgaat
     9241 taatttttga agtaaaagac gatttgtgtg aaaattttgt aaaaaaaact agagatatta
     9301 tggaaaatat agtaaaatta aaagtaaaat taaaaacaag ttcaagtatc gccaaaaatt
     9361 ggggcgattt aaaataatca aggagataat taatggatct ttcaaccata ttaggaatgg
     9421 tgcttgcagt tactagtatt tcggtaggag atatactaga gggaggcaat cctttgcatg
     9481 ttgtgcatct ttcttccttt ctcatagtta tgccaacagc tgcattttgc gcaatgactt
     9541 ctacgcataa aaaaattgta aaagcggcct acaaagaact caaagttgtt tttaaaggtt
     9601 ctggagtaaa tttacccgaa aggatagccc agttaataga atttgctatt attgcaagac
     9661 gagatggtct tttagcgtta gaatcaagaa ccagtgagat tgaaaatgaa tttttaaaaa
     9721 atgctatgat gatgcttgta gatggtaaaa gctttgaaga aattcacgaa agcatggaaa
     9781 tacaaaccga acaacttgaa gagcattata aagaatgcgc agaatattgg atagtatttg
     9841 gagaaacttg ccctaccatg gggcttgttg gagcggtttt tggtcttatt ctagctctta
     9901 aattgctaga caatcctcaa gcaatggcag cgggtatttc aggtgctttc acagctacag
     9961 ttacgggaat ttttggcgct tatgcacttt ttgctccttg ggggaaaaaa ttaaaagcta
    10021 atggaatgga tcttgtaaaa gagcaaattg ttattactga agctataaaa ggaattgcag
    10081 aaggtgctaa tcctagagat ttagaagcta aactttttaa cttcttaagt cacgatgatc
    10141 caagaatttc acaatttgac aaaggttaaa aatggctaaa aaacataaat gcccagaatg
    10201 tccagcaggt gaaaaatggg ctgtgcctta tgcagacttt ctaagtttgc ttttggcact
    10261 ttttattgct ctttgggcaa tttctaaaac aaaccctgct aaagtagagg ctttaaaaac
    10321 tgaatttgtt aaaatctttg attacacctc tactcaaaca gtcaaagaag agagtaaaac
    10381 ccaagaaaaa tataaaggcg cagcaaaaga agaaagcgat gaactcaaat cgttaaaaca
    10441 aatgactatg acacagcaag aaactatcaa acgtcttcaa gcagctctag atcaaagcga
    10501 taatcaggtt gctcttaacc ttccatctaa agttgaattt gaaagaggta gtgctcaaat
    10561 cgtttcagct gatatacaag attatttaaa acgtatggct gagctaacaa catatttgcc
    10621 acctcaagca aaaatagaaa ttagaggcta tacagacaat agcgactcta ttataagaag
    10681 ttatgaactc gcctaccaaa gagcggaaaa tgtattaaaa tattttatag aaggtggagc
    10741 aaatttgaaa aatattagca ttaaaagcta cgggcttaat aatcctatca atggaaatcc
    10801 acaaactcta gaaaataata gagtagaaat atattttaaa gtcgatacag cagatacaag
    10861 tactcaaaaa tcggttcttg agcttattaa caaaatagga actaaagcac cttaaaagtt
    10921 ttagtttcct ttttttactt gaccagctaa acgactctta ttatttgtat tataaacaaa
    10981 tcctagcacc tcagctacag ctttaaacat ttccctagga ataagatcat taacatcaca
    11041 agctttataa agctctcttg ctaaaggagg attttcataa actacaacat tattttcata
    11101 ggctacttgt tttatgcgaa gagcgagaaa atccactcct ttggcaacaa ccctaggggc
    11161 ttgttcttta cctgtatcat aacgaatagc tacggcataa tgcgttgggt ttgtgatcac
    11221 cacatccgca cctgcaacat cttgaaccat acgacgacgc gcagcttcca tttgaagtct
    11281 acgaattcta cctttaacct gaggatctcc ttccatttgt ttatactcat cttttatttc
    11341 ttgtttgctc atacgcaaac ctttaaaata ctgaaaacgc accaaaaaaa catctaaaac
    11401 agcaataatt aaaaaagcaa ctataacaat agctgctaaa acaatagctc tgtctcttag
    11461 ccaagtaagc tgtgcaacca tagtataaag ctcaactctt ggaagctctt gcataaattt
    11521 aagtaaaact ataaaagcta tagtaaaaac aatacccact tttaaaataa tttttatact
    11581 ttcaacaatt tttttcaatg aaaaaaggtt ttttaaacct tttagaggat tgatttttcc
    11641 taaatttggc ataataggtt tagttgtaaa aataaaacca aattgcataa tatttcccaa
    11701 aaccccagca atcataatac ttaaaacaat aggtgcaaga ataattaaaa cctcaaaaat
    11761 gcttttaatc ataatggctt gaataatacg caaatcaaat tcaacaccaa taaaactttg
    11821 atagtatcta tataaattta caattctctc gcccataaaa ctcatcataa ataaagttat
    11881 agttactcca attatcaaag ttacaatagc tgccgcatct tgagactttg gaacattacc
    11941 ttctttacgc gcatcttcta tctttttgga cgtgggttct tctgtttttt cttgatcttc
    12001 gcctgccata ttttagccta aataaaaatt ttaatatgtg tgtaaaatta tagtagaaaa
    12061 tttatgaatt tcaattaaag aataaaaatg aagaaaaagc ctcgtaaaga ggctttatac
    12121 taagaaatta aagtttagct tcgtttttgc caagatattc agccacgcct ttagggttag
    12181 ctttcatacc ttcatcgccc ttattccatc ctgcaggaca aacttcacca tgctcatttg
    12241 taaaaagcat agtatcaacc attcttaaca tttcatctat atttctacct agtggtaaat
    12301 cattaaccac agcatggcga actgttccat cagcatcaag caagaacgaa ccacgaaggg
    12361 caactgcttc tgcataaagt acatcaaaat ttctagcaat ctgcttagtt aaatcagcaa
    12421 caagtgggaa tttaacctga ccaataccac cttgatttac tggagtattt ttccaagcaa
    12481 aatgtgaaaa ttcattatct cctgaaattc caattacttc aataccgcgg tttttaaatt
    12541 cttgatatct tttgtcaaaa gctataattt ctgaaggaca aacaaaagta aaatcttttg
    12601 gataaaagaa tactaccgct ccttttggac ctatgttttt ataaagatta aaatcttgaa
    12661 caatttcatt gtttcctaat accgctggag cagtaaaatc taaagctttt ttagtaacta
    12721 tcatattttc tccta
//
LOCUS       DAPIWQ010000037        12681 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.037, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000037 DAPIWQ010000000
VERSION     DAPIWQ010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12681)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12681)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12681
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.037"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            98..382
                     /gene="gatC"
                     /locus_tag="RJ267_000740"
     CDS             98..382
                     /gene="gatC"
                     /locus_tag="RJ267_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HDV7388616.1"
                     /translation="MQIDEKLLSKLEKLSALQITKNRNETIAQLSEIVNFVEKLNELD
                     LDSQEITVSTIKGGAPLRIDEIRNSNVIDEVLDCAPKKQEHFFVVPKIIE"
     gene            450..1013
                     /locus_tag="RJ267_000741"
     CDS             450..1013
                     /locus_tag="RJ267_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HDV7388617.1"
                     /translation="MNFYWFDAFILGFTLLLGLKGIINGLIKEIFGLLGIIGGVFIAS
                     KYATQAAEFIQSTFYKIENQSLAGFAGFLAILIIFWIACLLAGNFLSKLIKLSGLGFL
                     DRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQP
                     LTENSLDHASEKLQDIVSDLNNTQKGE"
     gene            1015..1488
                     /locus_tag="RJ267_000742"
     CDS             1015..1488
                     /locus_tag="RJ267_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HDV7388618.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCGDCNNQKAKVKI"
     gene            1489..2994
                     /gene="lysS"
                     /locus_tag="RJ267_000743"
     CDS             1489..2994
                     /gene="lysS"
                     /locus_tag="RJ267_000743"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HDV7388619.1"
                     /translation="MFDNILEQQRIEKAKELKNLGINPYPHFLEKEMSLKTFKDKFSY
                     ILEQVEKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFSKDSVGEELYTIL
                     KKNLEVGDIVLVKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNVEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLIVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLDKLNLGKTIEFDGKMINFSKPFERITYKDALCKYGGLDRDLI
                     EDKEKILTKLKADGFEANEKLELGHLQAELFDNYVEEKLINPTFVIDFPISISPLSRR
                     SDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEKE"
     gene            2991..4235
                     /locus_tag="RJ267_000744"
     CDS             2991..4235
                     /locus_tag="RJ267_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HDV7388620.1"
                     /translation="MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGS
                     ILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYA
                     ALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE
                     KPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDE
                     WKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAG
                     ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDVNNEKLQ
                     ENIKQELKKLASNFIIYERAMF"
     gene            4232..4777
                     /locus_tag="RJ267_000745"
     CDS             4232..4777
                     /locus_tag="RJ267_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HDV7388621.1"
                     /translation="MISPMDMSLIKIIGDHYYIRRDKIVNKITHRGRLFFDKFERVDA
                     PLNLNVMREHAAKKIVVAHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFIN
                     FTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFASKMPVEWKVFPSMDVPREFN
                     ILILPYEVYQKERGSSWSKHM"
     gene            4791..5627
                     /locus_tag="RJ267_000746"
     CDS             4791..5627
                     /locus_tag="RJ267_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HDV7388622.1"
                     /translation="MENQKNEFDDIILEKSNKSEKVKKILLRVIALVILFLAIMIVMK
                     LINGSGDENTQNQSVLPSEPIATQDNNNDTSFESMPITDNTSAKDQFEALRKQFQDEQ
                     NTTQNTTTSSSNNNDTTNFAMPDQEVPAEPTATTSANTTPQASTPKQEVTQTAKSKEE
                     AKKQTAVKKEKESAKQTPKKEQNANDLFKNVDAKPVHPSGLASGIYVQIFSVSNLDQK
                     SKELASVKQKGYDYKLYKTTVGSKEITKVLIGPFEKADIAAELAKIRKDIAKDAFSFT
                     LK"
     gene            5624..6412
                     /locus_tag="RJ267_000747"
     CDS             5624..6412
                     /locus_tag="RJ267_000747"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HDV7388623.1"
                     /translation="MKFLAVIGDPISHSKSPRMHNNAIKALGLDSIYTRYHLRNANCL
                     REDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALG
                     FLEAIKDFDNIKKALILGAGGTALALAYALKQKGVEVYIANRSKERFKDFLAYPTYLY
                     KNLQDFDFDLVINSTSTGLKDENLPCDRELLDRILPKAKFAFEVIYGRETPFYRLCKE
                     YHLKIKDGLDMLLWQGVFAFELFFEIQDKREMIKNAMQQALILK"
     gene            complement(6487..7386)
                     /locus_tag="RJ267_000748"
     CDS             complement(6487..7386)
                     /locus_tag="RJ267_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7388624.1"
                     /translation="MKKYILLASSMLILAACGGTSSNFVNVSMPNFKPQVPTKVEPID
                     SGVSIALVPINIEQNNNYSDYFENSVLKIRIEKEIDLLKQNLEEQIKTIAQLKGYKIV
                     TTNPDYTLKSSISIYTEEKNVQKTSNFMSGDYVKSNLGINFKGKIDFIDAHNPQNSTN
                     LSSSTKLDSLVALNYPIKNDDGVNMFKTTISTVPTQLNKGLEQPAFEIDKSFLAFYKN
                     TLNTLYNNLPKATDIGKTIPNTNSGFNSFDGDATFEESLPQTNSNQNNTIENAPTQNI
                     PTNPSSTNQNNQSKNQDGVEIFE"
     gene            7476..8291
                     /locus_tag="RJ267_000749"
     CDS             7476..8291
                     /locus_tag="RJ267_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HDV7388625.1"
                     /translation="MEFWQHIYSNFNVIAFSIFGLKVHWYGIMYVIALLLALLLAKFF
                     VRKFQLDINEKHLDSYFIWVEIGVILGARLGYILIYDANTMYYITHPWQIFNPYINGE
                     FVGIRGMSYHGAIIGFLIATLLFCKKYKTNPWIFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITNVPWGIYVDGVLRHPSQLYEAFLEGIVVFIIVYLARFKQSFQGELILVYAGA
                     YSLARFICEFYREPDFGIGFVLWGMSMGQILSFIMFITALLVYICIKFKKVNI"
     gene            8361..9143
                     /locus_tag="RJ267_000750"
     CDS             8361..9143
                     /locus_tag="RJ267_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HDV7388626.1"
                     /translation="MRELIEGYLGKSIEGKKSKMPAKLDFIQSASGLFLGLFMWVHML
                     FVSTILVSEDFFNSVVHFLELKFVYDNPVMSYLTSFLAACVLVVFFVHALLAMRKFPI
                     NYRQYQILRTHSKKMNHSDTSLWWVQAFTGFIMFFLGSAHLIFIVTNADKISGDMSGD
                     RVVSHFMWLFYAVLLVCVELHGSIGLYRLCVKWGWFEGKNVKESRKKLKTAKWIISIF
                     FLVLGVLSLAAFIKIGYENYQNQTQTTAMIKNYNGANYEYTI"
     gene            9127..11118
                     /locus_tag="RJ267_000751"
     CDS             9127..11118
                     /locus_tag="RJ267_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HDV7388627.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLANGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAA
                     WGVPWTRVTKGPRTVVINAQKTVIEEKEEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRIIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLNG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIVGDYFADYCKNNGEVIDTNVVKDFLT
                     KEYQYLKSLVDKEGKHNVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKDSQD
                     VKVHCKELDCANPELEEAYRVPRMLKIALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTNTFWVEGETLPRIEYEELDIMKMEIPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKGRYEIQNALMPYELQAKYKAPNQRIGVDYE"
     gene            11111..11836
                     /locus_tag="RJ267_000752"
     CDS             11111..11836
                     /locus_tag="RJ267_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HDV7388628.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKLEERIEPEVADETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRSVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKELPLQSKIAYMRRQLVAQRNK"
     gene            11864..>12681
                     /locus_tag="RJ267_000753"
     CDS             11864..>12681
                     /locus_tag="RJ267_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HDV7388629.1"
                     /translation="MKELFQKIWQNELQFLNFDAKFQDKSKLDTAECAIILSVNKDNY
                     ERYFLLKEFQELCKKIDLRVDIFSMQNAQICILNLFKSGFISKQDLLKALKILEKISK
                     NTEIFDFILQEKVQSIDQKALFQNDFKELNTINLELQKLSFDENLKSRLQKTLEKFQN
                     LEFNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETANLTVLSYGKSEEAKIYFWDKK
                     EWQNILESSHFNADLKEFIDKLDKSVNIEDFIKDKPLIQNIALCELKNFSSAKN"
BASE COUNT         4413 a         1527 c         2460 g         4281 t
ORIGIN      
        1 agtattgtat catataaatt gcaaaatatc ctaaacaatt taaagctttt tatgatataa
       61 ttttcaaaat tttaactttt ttattaaggt ttaagaaatg caaatagatg agaaattatt
      121 aagcaagctt gaaaaattaa gtgctttaca aataacaaaa aacagaaatg aaaccattgc
      181 acagttaagt gaaattgtga attttgttga aaaattaaac gaacttgatc tagattccca
      241 agagattact gtgagtacta taaaaggtgg agctcctttg aggattgatg agataagaaa
      301 tagcaatgtt attgatgagg ttttggattg tgctccaaaa aaacaagaac atttttttgt
      361 tgttcctaaa atcatagaat gattaactta gcatttagtg cttatttgta gaataaattt
      421 aaaacaaaaa aaatcagaga gtgattgaaa tgaattttta ttggtttgat gcttttattt
      481 taggatttac cttgctttta gggcttaagg gtattatcaa tggtttgata aaagaaattt
      541 ttgggctttt gggtattatt ggtggtgttt ttattgcttc aaaatatgca actcaagcag
      601 ctgaatttat acaaagtact ttttataaga tagaaaatca aagcttagct ggatttgctg
      661 gatttttggc catattaatt attttttgga tagcttgttt gttggcaggt aattttcttt
      721 ctaagttgat taaattaagt ggcctaggtt ttttagatcg tattggtggc tttatatttg
      781 gcggggcaaa aatcttttta atttttgcaa ttttagtttt ttgtgtagca agaatcgatt
      841 ttttaaatga taaattagat aattttgcta aaaatagcta tactttgaat ttgcttaaag
      901 aaactggatc ttttattatg aatcaacctt taacagaaaa tagtctagat catgctagtg
      961 aaaagttgca agatattgta agtgatttaa acaatactca aaaaggggag tgatatgctg
     1021 atagaaaatg tggaatatga tgttttactt gagagattta aaaaaatatt aagacaaggc
     1081 ggacttaaat atactaagca aagagaagtg cttttaaaaa ctctttatca cagtgatact
     1141 cattacacac ccgaaagttt atatatggaa atcaaacaag ctgaacctga tttaaatgta
     1201 ggaattgcaa ctgtttatcg tactttaaat ttgcttgaag aagcagaaat ggtaacttcc
     1261 atttcttttg gttcagcagg taaaaaatac gagcttgcca ataaacctca ccatgatcat
     1321 atgatatgta aaaattgcgg aaaaattata gaatttgaaa atcctattat agaaagacag
     1381 caagccttga ttgcaaaaga acatggtttt aaacttacag ggcatttgat gcagctttat
     1441 ggtgtttgtg gtgattgtaa taatcaaaaa gcaaaggtaa aaatataaat gtttgataat
     1501 attttagagc agcaaagaat agaaaaagct aaggaattaa aaaatttagg gatcaatcct
     1561 tatcctcatt ttttagaaaa agaaatgtct ttaaagactt ttaaggataa attttcttat
     1621 attttagagc aagttgaaaa aagagatgaa agtgtcaatg ctgttgttgc aggacgtttg
     1681 aaacttttgc gtatagctgg gaaatcgatt tttgcaaaca ttgaagatga ggatacaaat
     1741 ttacaaattt attttagtaa agatagcgta ggcgaagagc tttatacgat tttaaaaaag
     1801 aatttagagg tgggtgatat tgttttggtt aaaggttttc cttttgtaac taaaacaggt
     1861 gagtttagtt tacatgcaag tgaagtaaaa ctcgctacaa aagctattgt tcctttacct
     1921 gaaaaatatc atggattaac agatattgag caaagatatc gtaaacgtta tgttgatatg
     1981 ataatgaatg tcgaagttag aaaagatttt ttagtgcgtt ctaaagtggt gagtttaatc
     2041 cgtcattttt ttgaaaataa aggcttttta gaagtagaaa ctcctatgat gcatccgatt
     2101 gcaggtggag caaacgctaa gccttttgta acttttcata attctttagg cgtagaaaga
     2161 tttttaagaa ttgctccaga actttatctt aaaagactta tagtaggtgg ttttgaggcg
     2221 gtttttgaaa tcaatcgttg ttttagaaac gaaggtatgg atttaactca taatcccgaa
     2281 tttacaacta tagaatttta ttgggcctat cataattata aagatttaat ggatttaacc
     2341 gaagaacttt ttgctttact tttggataaa cttaatttag gaaaaacaat agaatttgat
     2401 ggaaaaatga taaatttttc taaacctttt gaaagaataa cctataaaga cgcactttgt
     2461 aagtatggtg gtttagatag ggatttaatc gaagataagg aaaaaattct tactaaatta
     2521 aaagcagatg gttttgaagc gaatgaaaag cttgaacttg gacatttgca agctgaactt
     2581 tttgacaatt atgtggaaga aaaattgatc aatcctactt ttgtgattga ttttcctatt
     2641 tccataagtc ctttatcaag acgtagcgat gaggattctc agattgctga gagatttgag
     2701 ttgtttattt gcggaagaga attggcaaat ggttttaatg agcttaatga tcctcttgat
     2761 caatatgaga gatttttaaa acaaattgaa gctaaaaatg caggcgatga agaggcttgt
     2821 gaaatggatg aagattttgt aaatgctttg ggttatggaa tgcctccaac ggcagggcag
     2881 ggcataggta tagatagact tgttatgctt ttgacaaata aaaaatccat tcgtgatgtg
     2941 atattgtttc ctgcaatgcg tccattaaaa tcagaactaa aggagaaaga atgagtttag
     3001 aaatgtttga taaagaaatt tttgatttaa caaacaaaga gttagagcgt caatgtgaag
     3061 gtcttgaaat gatagcgagt gaaaatttca ctttacctga agtaatggaa gttatgggaa
     3121 gtatcttgac aaacaaatac gcagaaggtt atccgggtaa aagatattat ggtggttgtg
     3181 aatttgttga tgagattgaa actctagcta ttgaaagatg taaaaaactt tttaattgta
     3241 aatttgctaa tgttcagcct aattcaggtt ctcaagctaa tcaaggtgtt tatgcggctt
     3301 tgattaatcc aggtgataaa attttaggaa tggatttaag tcatggcgga catttaactc
     3361 atggtgcaaa agtaagttct tcgggcaaaa tgtatgaaag ctgtttttac ggcgtagaac
     3421 ttgatggaag aattgattat gaaaaagtaa gagaaattgc taaaaaagaa aaaccaaaac
     3481 ttatagtttg tggagctagt gcttatgcaa gagtgattga ttttgctaaa tttagagaaa
     3541 ttgctgatga aataggtgcc tatctttttg ctgatatagc acatattgca ggtcttgttg
     3601 tggcaggtga gcatccaagt ccttttccat acgctcatgt agtaagctca actacacata
     3661 aaactttgcg tggcccaaga ggtggtatta ttatgacaaa tgatgaagag cttgctaaaa
     3721 aaattaattc tgccattttt ccaggtattc aaggtggtcc tttgatgcat gtaattgctg
     3781 caaaagcagt aggatttaaa tttaatctta gcgatgagtg gaaagtttat gcaaaacaag
     3841 taagaactaa tgctcaagtt ttagctaatg ttttaatgga tagaaaattt aaacttgtta
     3901 gcgatggaac ggataatcac cttgttttaa tgagtttttt agatcgtgaa tttagtggaa
     3961 aagatgcaga tttagctctt ggaaatgcag gtattactgc aaataaaaat accgttccag
     4021 gagagattag aagtcctttt atcacaagtg gattaagact tggaactcca gcccttactg
     4081 ccagaggttt taaagaaaaa gaaatggaaa ttgtgtcaaa ttatattgca gatattttag
     4141 atgatgttaa taatgaaaaa ttacaagaga atattaaaca agaattaaaa aaacttgcaa
     4201 gtaattttat tatttatgaa agggctatgt tttgatttca ccaatggata tgtcgctaat
     4261 taaaataatt ggcgatcatt attatataag acgcgataaa attgtaaata aaattacaca
     4321 tagaggtcgc ttattttttg ataaatttga aagagttgat gctcctttaa atttaaatgt
     4381 catgagagaa cacgctgcta aaaaaattgt tgtcgctcat gatttaataa caaaagataa
     4441 taaagtagaa aatattgtct ttgattataa tggttttaat gctgaaagat tttatcaccg
     4501 tgcacaactt attttaagag aagaaggttt tataaatttc acagcctata agactaaaac
     4561 tccaggacat ttacatcttt atattcacaa aggacacacg gcgttaaacg aaggttattc
     4621 tttagcgtct aaactttcaa tgatgtttgc aagtaaaatg ccagtagaat ggaaggtgtt
     4681 tcctagcatg gatgtaccta gggaatttaa tattttaata ttgccttatg aggtttatca
     4741 aaaagaacga ggaagttctt ggtctaagca tatgtaagaa aggacaaatt atggaaaatc
     4801 aaaaaaatga atttgatgat attattttag aaaaaagtaa taaaagtgaa aaagtaaaaa
     4861 aaattctttt acgagttatt gctttagtta ttttgttttt agctatcatg atagttatga
     4921 agcttattaa tggtagtggt gatgaaaata cgcaaaatca aagtgtattg ccaagtgaac
     4981 ctatagcaac tcaagacaat aacaatgata cttcttttga aagtatgcca attacagata
     5041 atacttcagc aaaagatcaa tttgaggcat taagaaaaca atttcaagat gaacaaaata
     5101 caactcaaaa tacaacaacc tctagttcaa ataacaatga tactacaaat tttgctatgc
     5161 ctgatcaaga agttccagca gaaccaacag caactacttc agcaaatacc actccacaag
     5221 caagtactcc taaacaagaa gtaacacaaa ctgcaaaatc taaagaagaa gcaaaaaaac
     5281 aaacagctgt aaaaaaagaa aaagaaagtg caaaacaaac ccctaaaaaa gaacaaaatg
     5341 caaatgattt atttaaaaat gttgatgcta aacctgtaca tccaagtggt ttagcatcgg
     5401 gtatttatgt gcaaattttc tcagtaagta atttggatca aaaatcaaaa gaacttgctt
     5461 ctgtaaagca aaaaggttat gattataaac tttataaaac tacagttgga agtaaagaaa
     5521 ttaccaaggt tttaatagga ccatttgaaa aggcagatat tgcagcagaa cttgctaaaa
     5581 tccgtaagga tattgcaaaa gatgcttttt cttttacttt aaaatgaaat ttttagcagt
     5641 tataggcgat cctatttctc actctaaatc gcctagaatg cataataatg ctattaaagc
     5701 cttagggctt gatagcattt atacacgcta tcatttaaga aatgctaact gtttaagaga
     5761 agattttttt aaattaggac ttagtggagc taatattact ttgcctttta aggaaaaagc
     5821 tttagatatt gctgatgtga aggatgattt tgctagaaat attggctctg caaatacttt
     5881 atgcttaaaa gaagataaaa tttacgctta taatactgat gctttaggtt ttttagaagc
     5941 tattaaggat tttgataata taaaaaaagc tttgattttg ggtgctggag gtacagcttt
     6001 ggcgcttgct tatgcattaa aacaaaaagg cgtagaagtg tatatagcta atcgtagtaa
     6061 agaaagattt aaagattttt tagcttatcc aacttatctt tataaaaact tgcaagattt
     6121 tgactttgat ttggttataa attcaacttc tactggatta aaagatgaaa atttaccttg
     6181 tgatagggag cttttagata gaattttacc taaagctaaa tttgcttttg aggtaattta
     6241 tggcagagaa acaccttttt atagattgtg taaagagtat catttaaaaa ttaaagatgg
     6301 acttgatatg cttttatggc aaggagtttt tgcttttgaa cttttttttg aaatacaaga
     6361 taaaagagag atgataaaaa atgcaatgca acaggcattg attttaaagt agaatgatag
     6421 ttatttttct tgtataagaa aatcttattt tttgtgtgag aaagtttaat tttcccacaa
     6481 gttttatcat tcaaatattt ctaccccatc ttgattttta ctttgattat tttgatttgt
     6541 tgaagatgga tttgtaggaa tattttgtgt aggcgcgttt tcaattgtat tattttgatt
     6601 agaatttgtt tgaggtaagc tttcttcaaa ggtagcatcg ccatcaaaac tattaaaacc
     6661 actgtttgta ttaggtatag ttttgcctat gtctgttgct tttggtagat tgttataaag
     6721 tgtatttaat gtatttttat aaaaagctaa aaaactttta tcaatttcaa aagcaggttg
     6781 ctctaaacct ttattgagtt gagttggtac ggtagagata gtagttttaa acatattaac
     6841 cccatcatca tttttaatag gatagttaag cgcaactaaa gaatctagtt tagtgctact
     6901 tgaaagattg gttgaatttt gtggattgtg tgcatctata aaatctattt tacctttaaa
     6961 atttatacct aaattggatt ttacataatc tccactcata aaattgcttg ttttttgtac
     7021 atttttttct tccgtataaa tactgattga acttttaaga gtgtagtctg gattagtagt
     7081 aactatttta tagcctttta gttgagcgat ggttttgatc tgctcttcta aattttgttt
     7141 taaaagatca atttcttttt ctatgcgaat tttaagcact gaattttcaa aataatcaga
     7201 ataattgtta ttttgttcta tattaatagg cacaagagca atgcttactc cagaatcaat
     7261 aggttcaacc tttgttggaa cttggggttt aaaatttggc atagaaacat tgacaaaatt
     7321 actacttgta cccccacaag ctgctaaaat taacatacta ctagcaagta aaatatattt
     7381 tttcattttt tacctttatt taatgtgttt gtgttaatta tagcaagtta aagttttttt
     7441 gttatatttt tataaaagaa aattaggaaa gatatatgga attttggcag catatttatt
     7501 caaattttaa tgttatagct tttagcatct ttggtttaaa ggtgcattgg tatggcatta
     7561 tgtatgttat agctttgctt ttggctttgc ttttggctaa attttttgta agaaaatttc
     7621 aactagacat taatgaaaaa catttggata gttattttat atgggttgaa ataggggtta
     7681 ttttaggtgc aagacttgga tatattttga tttatgatgc aaatactatg tattatatta
     7741 ctcatccttg gcaaattttt aatccttata ttaatggtga atttgtaggt attcgaggta
     7801 tgagttatca tggagcaatt ataggatttt tgatagctac tttattgttt tgtaaaaaat
     7861 ataaaacaaa tccttggatt tttcttgatt tggttgcttt aagtgttcca ttggcttatg
     7921 tttttggtcg tataggaaat tttttaaatc aagagctttt tggtcgcatt acaaatgtgc
     7981 cttggggaat ttatgttgat ggagtattgc gccatccatc gcaactttat gaagcatttt
     8041 tagaaggtat tgttgttttt attatagttt atttagcaag atttaagcaa agctttcaag
     8101 gggaattgat tcttgtgtat gctggtgctt attcattggc aagatttata tgtgaatttt
     8161 atcgcgagcc tgattttggt ataggttttg ttttatgggg tatgagtatg gggcaaattt
     8221 taagttttat aatgtttata acagctttgt tagtttatat ttgtataaag tttaaaaaag
     8281 taaatattta atctatctta aagacttttg taatataatg aaatggattt tttttaattt
     8341 ctttttacaa aggagtaaag atgcgtgagc ttatcgaagg ttatttgggt aagagcattg
     8401 agggcaaaaa aagtaaaatg cctgcgaaat tagactttat ccaaagtgct tcagggcttt
     8461 ttttaggtct ttttatgtgg gtgcatatgc tttttgtttc tacaatttta gtcagtgagg
     8521 atttttttaa ttctgtagtg cattttttag aattaaaatt tgtttacgat aatcctgtta
     8581 tgagttatct tacttcattt ttagccgcct gtgttttagt ggtttttttc gttcatgctt
     8641 tacttgcaat gagaaaattt cctattaatt accgtcagta tcaaatacta agaacacaca
     8701 gtaaaaaaat gaatcacagc gatacttcgt tatggtgggt tcaagctttt acaggtttta
     8761 ttatgttttt cttaggttct gctcatctta tttttattgt aaccaatgca gataaaatca
     8821 gcggcgatat gtcaggagat agggttgtaa gtcattttat gtggcttttt tatgctgttc
     8881 ttttagtctg tgttgaactt catggaagta tagggcttta tagactttgt gttaaatggg
     8941 gttggtttga aggaaaaaat gtaaaagaaa gtcgcaaaaa gcttaaaact gctaaatgga
     9001 taatcagtat tttcttccta gttttaggtg tgttaagtct tgcagcattt ataaaaatag
     9061 gttatgaaaa ctaccaaaat caaacccaaa ctactgcgat gataaaaaac tacaatggag
     9121 caaattatga atatacaata tagtgatgct ttagtaatag gcggaggatt agcaggtctt
     9181 agagcggcta ttgaagtagc aaagagtggc caaagtgtaa cacttttaag tatttgtcca
     9241 gtgaagcgtt ctcactctgc agcggtgcaa ggaggtatgc aggcaagttt agcaaatggg
     9301 gcaaaaggtg agggtgataa tgaagatctt cactttgcag atacagtaaa aggaagtgat
     9361 tggggctgtg atcaagaagt agcaagaatg tttgctcaaa ctgcgccaaa agcagtgcgt
     9421 gagcttgcgg cttggggtgt gccttggact agagttacta aaggtccaag aactgttgta
     9481 atcaatgcac aaaaaactgt gattgaagaa aaagaagaag cgcacgggct tattaatgct
     9541 agagattttg gtggaactaa aaaatggaga acttgctata tcgcagatgc aacagggcat
     9601 tgtatgcttt atggtgtagc aaatgaagct attaaacatc aagtaaaaat tattgataga
     9661 atggaagcag taagaattat ccatgatggt aaaaaatgct taggtgtgat cgctagagat
     9721 ttaactaatg gacaactcat tgcttatatt gcaagaggaa ccatgatagc aacagggggc
     9781 tatggtagaa tttataaaca aactacaaat gcggtaattt gtgaaggaac aggtgcagcc
     9841 atcgctcttg aaacagggct ttgcagactt tcaaatatgg aagcagtgca atttcatcca
     9901 actcctattg tgccaagcgg tattttgctt actgagggct gtcgtggtga tggtggaatt
     9961 ttacgcgatg tggatggata tcgttttatg cctgattatg aaccagagaa aaaagaactt
    10021 gcaagccgtg atgtggtaag tcgtagaatg atggaacata ttcgtaaagg caaaggtgta
    10081 aaaagccctt atggggatca tttatggctt gatatttcta tacttggaag agctcatgtg
    10141 gaaaaaaatc tccgcgatgt acaagatatt tgtaaaactt ttaatggtat tgatccagca
    10201 gatgagggtc caaaaggttg ggcgccagtt cttccaatgc agcattattc tatgggtgga
    10261 attagaacta aaccaacggg tgaaagtcaa tggttaaacg gactttttgc ttgtggagaa
    10321 gcagcttgct gggatatgca cggatttaat cgtttaggtg ggaattcatg tgctgaaact
    10381 gttgtagcag gtatgatagt gggagattat tttgcagatt attgtaaaaa taatggtgaa
    10441 gtaattgaca caaatgtagt aaaagacttc ttaactaaag agtatcaata tttaaaatct
    10501 ttagtagata aagaaggtaa acataatgtt tttgaaatca aaaacagaat gaaagaaatc
    10561 atgtgggata aggtggccat ctttagaaca ggtgaaggtt tgaaagaagc agtagatgaa
    10621 cttgaaaaac tttataaaga ttctcaagac gttaaagtac attgtaaaga acttgattgt
    10681 gcaaatccag agcttgaaga agcgtataga gtgccaagaa tgttaaaaat agcactttgc
    10741 gtagcttatg gagcgctttt aagaacagaa agtcgtgggg cgcattatag ggaagattat
    10801 ccaaaaagag atgatttaaa ttggatgaaa agaaccaata ctttttgggt agaaggcgaa
    10861 accttaccac gcatagaata cgaagagctt gatattatga aaatggaaat tccaccagca
    10921 ttccgtggat acggtgctaa aggaaatatt atagaaaatc ctttaagtga aaaacgccaa
    10981 gctgaagtgg atgctatccg tgaaaaaatg gaagctgaag gcaaaggtcg ttatgaaatt
    11041 caaaacgcct taatgcctta tgaattgcaa gctaaatata aagcaccaaa ccaaagaata
    11101 ggagttgatt atgagtagaa aattgacaat aaaggcattt aaatacaatc ctttaagcaa
    11161 aatttctaaa ccacattttg tgacttatga gcttgaagaa actcctttta tgacggtttt
    11221 tgtatgtttg actttgatcc gtgaaaaaat ggatgcagat ctgagttttg actttgtttg
    11281 tcgtgcaggg atttgcggat cttgtgcaat gatgattaat ggagtgccaa aacttgcttg
    11341 taaaactttg actaaagatt atcctgatgg agtgatagag cttatgccta tgcctgcatt
    11401 taggcatatt aaagatttaa gcgtgaatac aggcgagtgg tttgaagaca tgtgtaagcg
    11461 tgttgaaagc tgggtgcata atgaaaaaga aactgatatt tctaaacttg aagaacgcat
    11521 tgagccagaa gttgcggatg aaacttttga acttgatcgt tgtatagagt gtggaatttg
    11581 tgtagcttct tgtgcaacta aacttatgcg cccaaatttc atagctgcta cagggctttt
    11641 aagaacagct agatatttac aagatccgca tgaccataga agtgtggaag atttttatga
    11701 attagtaggc gatgatgatg gtgtttttgg ttgtatgtca ttgcttgctt gtgaagataa
    11761 ttgccctaaa gaattacctt tacaaagtaa aatcgcttat atgagaagac aacttgtcgc
    11821 tcaaagaaat aaataaatct ttcccctttt taaggggaag attgtgaaag aattattcca
    11881 aaaaatttgg caaaatgaac tccaattttt aaattttgat gctaaatttc aagataaaag
    11941 caaacttgat acagccgagt gtgcgattat tttaagtgtc aataaagaca attatgaaag
    12001 atattttctc ttaaaagaat ttcaagagct ttgcaaaaaa attgatttaa gagtggatat
    12061 ttttagtatg caaaatgctc aaatttgtat tttaaatctt tttaaatcag gttttatttc
    12121 aaagcaagat ttacttaagg ctctaaaaat tttagaaaaa atttcgaaaa ataccgaaat
    12181 atttgatttt attttacaag aaaaagttca aagtatagat caaaaagctt tatttcaaaa
    12241 tgattttaaa gaattaaaca ccattaattt agagcttcaa aagctaagtt ttgatgaaaa
    12301 tttaaaatca agacttcaaa aaactttgga aaaatttcaa aatttagagt ttaatatagc
    12361 catcactggc gtgatgaatg caggaaaatc aagtctttta aatgctcttt taaaagaaga
    12421 ttttttaggg gtttcaaaca tacctgaaac agctaattta acagtattaa gctatggtaa
    12481 gagtgaagaa gcaaagatat atttttggga taaaaaagaa tggcaaaata tacttgaaag
    12541 ttcgcacttt aatgcagatt taaaagaatt tattgataag ctggataaga gtgtaaatat
    12601 agaagatttt attaaagata aacctttgat acaaaatatc gcactttgtg agcttaaaaa
    12661 tttcagttct gctaaaaata a
//
LOCUS       DAPIWQ010000038        12576 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.038, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000038 DAPIWQ010000000
VERSION     DAPIWQ010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12576)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12576)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12576
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.038"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..1044
                     /gene="ccoG"
                     /locus_tag="RJ267_000754"
     CDS             <1..1044
                     /gene="ccoG"
                     /locus_tag="RJ267_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HDV7388630.1"
                     /translation="INNKQKEYERQYFKKFLGVIIFYFISLVAVSNLLWYFIPPEDFF
                     NYIQNPGEHLLLLGILFCASLLFTLDITYLQEKFCVYVCPYARIQSVMFDHDTMQVIY
                     DEKRGGLIYDGHTKLHKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADAC
                     SKVQSKFNRPSLINWTSAKAIETRSKVHYLRFRTIAYFIVLLIALLALIIMGSKKESM
                     LLNINRSSELYNISNVKGELVISNAYTFLFQNTDSKPHEYYFTANLEGINDGIEIIRP
                     NKPFKLKAGEQVKKIVVIRATKNLANNDKKDVIFPLHIKAYAKDNEKISVFRKSIFVY
                     PKSTLIKDKNELK"
     gene            1031..1663
                     /gene="cmeR"
                     /locus_tag="RJ267_000755"
     CDS             1031..1663
                     /gene="cmeR"
                     /locus_tag="RJ267_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HDV7388631.1"
                     /translation="MNSNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNILMGFFKQQNNSYMKKNAEK
                     LAVLFCTMLKEPYHHLNVLINAPLKNKKEQKEHVEFVVNVFLNGINSSKA"
     gene            1758..2861
                     /gene="cmeA"
                     /locus_tag="RJ267_000756"
     CDS             1758..2861
                     /gene="cmeA"
                     /locus_tag="RJ267_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HDV7388632.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEAPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIENKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQNGKWDLDSIHANLNLNGETVQGKLYFIDSVIDANSGTVKAKAIFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQNQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            2861..5971
                     /gene="cmeB"
                     /locus_tag="RJ267_000757"
     CDS             2861..5971
                     /gene="cmeB"
                     /locus_tag="RJ267_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HDV7388633.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGAIGLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPSSLVPEED
                     QGLMIGIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLKDWKDRNVSADEIAMELNKKFAFDRNASSIFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAVANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKKR"
     gene            5977..7455
                     /gene="cmeC"
                     /locus_tag="RJ267_000758"
     CDS             5977..7455
                     /gene="cmeC"
                     /locus_tag="RJ267_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HDV7388634.1"
                     /translation="MNKIISISAIASFTLLISACSLSPNLNIPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSGF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKEAYKSAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNI
                     KYSYANSIVDVIKAFGGGFEQSEDTSKNIKEESKNLDMSFRE"
     gene            complement(7478..7729)
                     /locus_tag="RJ267_000759"
     CDS             complement(7478..7729)
                     /locus_tag="RJ267_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388635.1"
                     /translation="MDKAKIVQNLNALFKQRAEFYSYFDENIAKINNTEVFDFKNAKN
                     LNPEEVYKQFYHFDYAIRKLLPAIYKAYEITDADLDKDF"
     gene            7858..9204
                     /locus_tag="RJ267_000760"
     CDS             7858..9204
                     /locus_tag="RJ267_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HDV7388636.1"
                     /translation="MNLFQNLALKYSHTMMEKSLQKGFNVELLKQPEEKIPKQDKSYM
                     LYAHVPFCHTFCPYCSFHKYYYDENLAKVYFQNLREEIKIMKNKGFDFTSMYVGGGTT
                     LIDEEELLKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDET
                     LKKVARYNKFGSSKELQEKISKALGILPIFSIDLIFNLPGQNEKQLLNDLEIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVSIKDNEFTYYQIIREFFKDYTQNNGWSFSLEKNK
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKE
                     IIKYVFLTEIFSGKIEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATEFG
                     QYLFVVLMKDFYTGMDLVRAVFRDDKRLKNKDYIDIMKENIDPLNSASMEFKAETN"
     gene            complement(9201..9653)
                     /gene="hemJ"
                     /locus_tag="RJ267_000761"
     CDS             complement(9201..9653)
                     /gene="hemJ"
                     /locus_tag="RJ267_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HDV7388637.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEVVKIQERKLYYYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSTKSGKYFRIYNEFPTIMFIIIALMMVVRPF"
     gene            complement(9637..10107)
                     /locus_tag="RJ267_000762"
     CDS             complement(9637..10107)
                     /locus_tag="RJ267_000762"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HDV7388638.1"
                     /translation="MAKTFKFIFYFWGAFVLVFALDQWVKSLTLAGFRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIGVLFIYLFWQRTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            complement(10100..11437)
                     /locus_tag="RJ267_000763"
     CDS             complement(10100..11437)
                     /locus_tag="RJ267_000763"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HDV7388639.1"
                     /translation="MRLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALHPVNLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLINLKIAEKKDLDKIKGLK
                     ELKKDLENKNINTLFRYSGTENLIRLLLEARDIKLLEKEMKNVVEFFKKALNG"
     gene            complement(11531..12556)
                     /locus_tag="RJ267_000764"
     CDS             complement(11531..12556)
                     /locus_tag="RJ267_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HDV7388640.1"
                     /translation="MKVKALLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGVSTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
BASE COUNT         4506 a         2008 c         1909 g         4153 t
ORIGIN      
        1 atcaataaca aacaaaaaga atatgagagg caatatttta aaaaatttct tggagtgata
       61 attttttatt ttatatcttt agttgctgtt agtaatttac tttggtactt tattcctcct
      121 gaagattttt tcaattatat tcaaaatcct ggcgagcatc tacttttact tggaatttta
      181 ttttgtgcta gcttactttt tactttggat attacctatt tacaagaaaa attttgtgtt
      241 tatgtctgtc cttatgcaag aatacaatct gtaatgttcg atcatgatac aatgcaagtg
      301 atctacgatg aaaaacgcgg gggcttgatc tatgatggac acaccaaact tcataaaaaa
      361 ccgcctgagg gagaatgcat aggttgcgaa gcctgtgtta gtatctgtcc aactcatatt
      421 gacatacgca aaggaatgca acttgaatgt attaattgtc ttgaatgtgc cgatgcttgc
      481 tctaaggttc aaagcaaatt taatcgtcca agtttgatca attggacaag tgcaaaagct
      541 attgaaacgc gttctaaggt tcattattta agatttagaa cgatagcata ttttatagtt
      601 cttttaattg ctttactggc tttaatcatc atgggaagca aaaaagaaag catgctttta
      661 aatatcaatc gtagtagtga attatataat atttcaaatg ttaaaggtga attagtcatt
      721 tcaaatgctt ataccttttt gtttcaaaat acagattcta aacctcatga atattatttt
      781 acagcaaatt tagaaggaat aaatgatgga attgaaatca taagaccaaa caaacctttt
      841 aaattaaaag caggagaaca agtcaaaaaa atagttgtta tcagggctac aaaaaattta
      901 gcaaataatg ataaaaaaga cgtaatcttt cctttacata taaaagctta cgcaaaggat
      961 aatgaaaaaa tttcggtttt tagaaaaagt atatttgtat accctaaaag cactcttata
     1021 aaggataaaa atgaactcaa atagaacacc atcacaaaaa gttttagcca gacaagaaaa
     1081 aatcaaagca gtggccttag agcttttttt aacaaaagga taccaagaaa caagtttgag
     1141 tgatattatt aaattatctg gaggatctta ttctaatatt tatgatggtt ttaaaagtaa
     1201 agaagggcta ttctttgaaa ttttagatga catatgtaaa aaacactttc atcttattta
     1261 ttccaaaaca caagaaattg aaaatggcac tttaaaagaa attttaactt cttttggttt
     1321 agcttttata gaaattttca atcaaccaga agctgtagct tttggtaaaa ttatctattc
     1381 tcaagtttat gacaaagata gacatcttgc caattggata gaaaataatc aacaaaattt
     1441 ttcctataac atacttatgg gttttttcaa gcaacaaaat aattcttata tgaaaaaaaa
     1501 tgcagaaaaa cttgctgttc ttttttgcac tatgttaaaa gaaccttatc atcatcttaa
     1561 tgttttaatt aacgctcctt tgaaaaataa aaaagaacaa aaagaacatg ttgaatttgt
     1621 tgtaaatgtt tttctaaatg gaatcaatag ctccaaagct taaaaaataa ttttattaac
     1681 caaaattaag atataattag ccaaaaattt ttgtaataaa aattacaatt tttaatttaa
     1741 tttttcaagg caaaaccatg aaattatttc aaaaaaatac tattttagct ttaggtgttg
     1801 tgcttttact cactgcttgc agcaaagaag aagcaccaaa aatacaaatg ccgcctcaac
     1861 ctgtaacaac catgagtgct aaatctgaag atttaccact tagttttact taccctgcta
     1921 aacttgtcag tgattatgat gtcattataa agcctcaagt tagtggcgta atagaaaata
     1981 aactttttaa agctggagat aaagtaaaaa aaggacaaac attatttatt atagaacaag
     2041 acaaatttaa agctagtgtt gattcggctt acggacaagc tttgatggct aaggcaactt
     2101 tcgaaaatgc aagcaaggat tttaatcgtt ctaaagctct ttttagtaaa agtgcaatct
     2161 ctcaaaagga atacgactct tctcttgcta catttaacaa ttcaaaagct agtctagcaa
     2221 gtgctagagc acagcttgca aatgcaagaa ttgatctaga tcataccgaa ataaaagctc
     2281 cttttgatgg tactatagga gatgctttag ttaatatagg agattatgta agtgcttcaa
     2341 caactgaact agttagagtt acaaatttaa atcctattta cgcagatttc tttatttcag
     2401 atacagataa actaaattta gtccgcaata ctcaaaatgg aaaatgggat ttagacagca
     2461 ttcatgcaaa tttaaatctt aatggagaaa ccgttcaagg caaactttat tttattgatt
     2521 ctgttataga tgctaatagt ggaacagtaa aagccaaagc tatatttgac aacaacaact
     2581 caacactttt accaggtgct tttgcaacaa ttacttcaga aggttttata caaaaaaatg
     2641 gctttaaagt gcctcaaata gctgttaaac aaaatcaaaa tgatgtttat gttcttcttg
     2701 ttaaaaatgg aaaagtagaa aaatcttctg tacatataag ctaccaaaac aatgaatatg
     2761 ccattattga caaaggatta caaaatggcg ataaaatcat tttagataac tttaaaaaaa
     2821 ttcaagttgg tagcgaagtt aaagaaattg gagcacaata atgttttcta aattttttat
     2881 cgaaagacct gtttttgctt cagttgttgc aattatcatt tctttagctg gagctatagg
     2941 tcttacaaat ttacctatag aacaatatcc ttctttaacc cctcctacag ttaaagtaag
     3001 tgcaacttac acaggagctg atgcacaaac cattgcttca acagttgcaa gtcctatcga
     3061 agatgcaatc aatggcgcag ataatatgat ttacatggat tcaacttcaa gttcttcagg
     3121 aactatgagt ttgactgttt attttgatat cggtacagat cctgatcaag ccaccataga
     3181 tgttaataat agaatttcag ccgcaactgc aaaaatgcca gatgcagtta aaaaacttgg
     3241 agtaacagtt agaaaaactt cctcaacaac acttgctgca atttctatgt attcaagtga
     3301 tggctcaatg agtgcagtag atgtatataa ctatatcact ttaaatgttt tagatgagtt
     3361 aaaaagggtt ccaggagttg gagatgcaaa cgctatagga aatcgtaatt attctttaag
     3421 aatttggctc aagcctgatt tattaaataa atttggaatc acagctactg atgtaatttc
     3481 tgcggttaat gaccaaaatg cccaatacgc aactggtaaa attggcgaag aacctgtaac
     3541 ccaaaaatcc ccttatgttt attcaatcac tatgcaagga agactacaaa atcctagtga
     3601 atttgaaaac attattttaa gaacaaataa tgatggatca tttttaagac ttaaagatgt
     3661 agctgatgtg gaaataggat cacaacaata cagctcacaa ggacgattaa atggcaatga
     3721 tgcagttcca attatgatca atcttcaatc aggggcaaac gcattgcata cagcagaact
     3781 tgttcaagct aaaatgcaag aactttcaaa aaattttcca aaaggtttaa catataaaat
     3841 tccttacgat acaacaaaat ttgtaataga atcaatcaaa gaagttgtta aaacttttgt
     3901 tgaagctcta attttagtta tcattgttat gtatatgttc ttaaagaatt tccgtgcaac
     3961 acttattcct atgatagctg tacctgtttc attgttagga acttttgctg gactttatgt
     4021 tttaggtttt agtattaact tgcttacgct ttttgcttta attttagcca tagggatcgt
     4081 tgtagatgat gcgattatag ttgtagaaaa tattgatagg attttacatg aaaatgagca
     4141 aataagcgta aaagatgctg ctatccaagc gatgcaagaa gttagctctc cggttatttc
     4201 aattgttctt gtgctttgtg ctgtttttgt accagtttct tttatatcag gttttgttgg
     4261 agaaattcaa agacaatttg ctcttacctt agctatatct gtaaccatat caggttttgt
     4321 tgctcttacc ttaacacctt ctttatgtgc actctttttg cgacgtaatg aaggagagcc
     4381 atttaaattt gtaaagaaat ttaatgattt ttttgattgg agtacctctg tatttagcgc
     4441 aggagtagca tatattctaa aaagaaccat tcgttttgtt ttaatttttt gtattatgct
     4501 tggggcaatt ttttatctct ataaagctgt accaagctct ttagttcctg aagaagatca
     4561 aggtttgatg attggcatta tcaaccttcc ttcggcttca gcactccata gaacaatctc
     4621 agaagttgat cacataagcc aagaagtttt aaaaactaat ggagttaaag atgcaatggc
     4681 tatgatagga tttgatcttt ttacaagttc actcaaagaa aatgccgctg caatgtttat
     4741 aggcttgaaa gattggaaag atagaaatgt gagtgctgat gaaatcgcca tggagcttaa
     4801 taaaaaattt gcttttgatc gcaatgcttc aagtatattt ataggcctac ctcctatacc
     4861 tggattaagt atcacaggcg gttttgaaat gtatgttcaa aacaaaagcg gaaaaagcta
     4921 tgatgaaata caaaaagatg taaataaact tgttgctgtg gccaaccaaa gaaaagagct
     4981 atcaagagta agaacaaccc ttgatacaac tttccctcaa tacaagctta taattgatag
     5041 agataaatta aaacactaca atcttaacat gcaagatgtt tttaacacga tgaatgcaac
     5101 tataggcact tattatgtta atgatttttc tatgctaggt aaaaacttcc aagtaaatat
     5161 ccgcgcaaaa ggtgatttta gaaatacaca agatgcatta aaaaatattt ttgtaagatc
     5221 aaatgatgga aaaatgatac cacttgattc tttcttaact ttacaaagaa gttcagggcc
     5281 tgatgatgta aaacgattca accttttccc agcggcacaa gttcaaggtc aacccgcacc
     5341 aggttatact tcaggtcaag ctatagaagc gattgctcaa gtagcaaaag aaactttagg
     5401 ggatgattat tccatagctt ggagtggatc agcttatcaa gaagtttcta gtaaaggaac
     5461 agcaagttat gcttttgctt taggtatgat atttgtcttt ttaattctag ctgcccaata
     5521 tgaaagatgg cttatacctt tagcagttgt aacagctgta ccttttgcgg tatttggatc
     5581 atttttattg gtatatttaa ggggatttag caatgacata tattttcaaa caggactttt
     5641 gctcttgatt ggactttcag ctaaaaatgc tatcttaatc gtagaatttg caatggaaga
     5701 gcgctttaaa aaaggcaaag gagtttttga agcagctgtt gcagcagcaa aacttcgttt
     5761 tcgtcctatc ataatgactt ctttggcatt tacttttggg gtcttgccaa tgattttcgc
     5821 aacaggagca ggaagtgctt caagacactc tttaggaaca gggcttattg gtggaatgat
     5881 cgcagcatca actttagcga tattctttgt gcctttattt ttctatcttt tagaaaattt
     5941 taatgaatgg ctagataaaa aaaagaggta aggttcatga ataaaataat ttcaattagt
     6001 gctatagcaa gttttactct tttgatttca gcttgctctt taagtccaaa tttaaatatt
     6061 cccgaagcaa actatagcat tgataataag cttggagcct tatcttggga aaaagaaaac
     6121 aatagctcta tcacaaaaaa ttggtggaaa gactttgatg atgaaaattt aaataaagtg
     6181 gttgatttag cacttaaaaa taataatgat ttaaaacttg ctttcataca catggaacaa
     6241 gctgctgctc aattaggtat agattttagc agtttgttgc caaaatttga tggtagcgca
     6301 agcggaagtc gtgcaaaaac agctataaat gctccaagca atcgaactgg ggaagtaagt
     6361 tacggtaatg attttaaaat gggacttaat ttaagctatg aaatcgatct ttggggaaaa
     6421 tatcgcgata catatcgcgc ctcaaaatca ggctttaaag caagtgagta tgattatgaa
     6481 gctgcaagac tttctgttat ttcaaataca gttcaaactt attttaatct tgtaaatgct
     6541 tatgaaaatg aaaatgctct taaagaagcc tataaatctg caaaagaaat ttataggatt
     6601 aatgatgaaa aatttcaagt tggtgctgta ggtgaatatg aacttgctca agcaagagcc
     6661 aacttagaaa gtatggcttt gcaatataat gaagcaaagt taaataaaga aaattacctt
     6721 aaagctttaa aaattttaac ttcaaatgat ttaaatgaca tactttacaa aaatcaaagc
     6781 tatcaagttt ttaatcttaa agaatttgac attccaactg gaatttcaag taccatcttg
     6841 cttcaacgtc cagatattgg ctcttcttta gaaaaattaa ctcagcaaaa ttatcttgtt
     6901 ggagtagctc gcacggcttt cttacctagc ctttctttaa caggattatt gggatttgaa
     6961 agcggggatt tagatacctt ggttaaagga ggttctaaga cttggaatat aggtggaaac
     7021 tttactctgc ctatttttca ttggggtgaa atttaccaaa atgtaaattt agccaagctt
     7081 aataaagatg aagcttttgt aaattatcaa aatactttga ttactgcttt tggagaaatt
     7141 cgctatgctt tagtagctag aaaaactata cgcttacaat acgataatgc acaagcaagc
     7201 gaacaatctt acaaaagaat ctatgaaatt gctaaagaac gctatgatat aggagaaatg
     7261 tctttgcaag attatttaga ggcacgtcaa aattggctta atgctgcggt tgcttttaat
     7321 aatattaaat attcttatgc caattccata gtagatgtaa tcaaagcatt tggtggagga
     7381 tttgagcaaa gtgaagatac gagtaaaaat ataaaagaag aatcaaaaaa tttagatatg
     7441 tcttttagag aatagtttgt tctattctct aaataaatta aaaatctttg tctaaatctg
     7501 catctgtaat ttcataagcc ttgtaaatag caggcaataa ttttcttata gcataatcaa
     7561 aatgataaaa ttgcttatat acctcttctg gatttaaatt tttagcattc ttaaaatcaa
     7621 atacttcagt attattgatt ttggcaatat tttcatcaaa ataagagtaa aactctgctc
     7681 tttgtttaaa caaagcattt aaattttgaa caattttggc tttatccatt tttatatcct
     7741 ttttaaataa tttaaaaact taatcccatt ttttatttaa gaaataaaaa atttactcct
     7801 attttagcta aaaattgata aagttatgtc ttaaatattt taatatatag gccacttatg
     7861 aatttatttc aaaatttagc tttaaaatac tctcatacta tgatggaaaa atccctccaa
     7921 aaaggtttca atgtcgaact tttaaaacaa cccgaagaaa aaattccaaa acaagacaaa
     7981 agctatatgc tttatgccca tgtacctttt tgccatactt tttgtcctta ttgtagcttt
     8041 cataaatatt attatgatga aaatttagcc aaagtatatt ttcaaaatct tagagaagaa
     8101 attaaaatca tgaaaaataa aggttttgat tttacctcca tgtatgtggg tggtggtaca
     8161 acactgattg atgaagagga attattaaaa accttagaac tttgtaaaaa gttatttaat
     8221 ataaaagaaa tttcatgcga aagcgatcca aatcatattg atccaaataa gctttctatg
     8281 tttaaaggta taattgatcg tttaagttgc gggattcaaa gttttgatga tgaaactttg
     8341 aaaaaagtgg caagatataa taaatttggt tcatctaaag aacttcaaga aaaaatttca
     8401 aaagctttag gaattttacc tatttttagt atagatctta ttttcaatct tccaggacaa
     8461 aacgaaaaac aacttttaaa tgacttagaa attgctaaaa atttagcccc gcaacaaatc
     8521 acaacctatc ctttaatgaa atcaaatctt accaaagata atatcgctaa aagtctagga
     8581 gtgagcatta aagataatga atttacttat tatcaaatca tacgagaatt ttttaaagac
     8641 tatacccaaa acaatggttg gagtttttct ttagaaaaaa acaagcttaa tgacgaatat
     8701 gtcagttctc atcatgaata cctaggagta ggcagcgggg cttttagctt tttagatggg
     8761 gagcttttaa tcaatgcatt taatctaaat gattatgcta aatttataca agaaaaacaa
     8821 aatgctaata tagccaaagc ttgttttgat aaaaaagaaa ttatcaaata tgtcttttta
     8881 actgaaattt tttcagggaa aatagaaatt gataaattta ataaaactct aaattgcaat
     8941 ctcgaaaaag aacttttcat agaactttta ggacttaaaa caagtggtgc catcataaaa
     9001 gatcaaaatg ctttaatcgc aactgaattt ggtcaatatc tttttgtggt tttaatgaaa
     9061 gatttttaca caggaatgga tcttgtgcgc gcagtattta gagatgataa gcgtcttaaa
     9121 aataaagatt atatcgatat catgaaagaa aatattgatc cgcttaactc cgctagtatg
     9181 gaatttaaag cggagacaaa ctaaaaggga cgaacaacca tcattaaagc gatgataata
     9241 aacattatag ttggaaattc attataaatt ctaaaatatt ttccactttt agtagaagta
     9301 tcatttgcta aagcttttaa acaataataa ttatgtatat gaaaaataat caaaagtgta
     9361 acacaggtaa gtttaacatg cataaaaccc gcacctacca ttaaaacttc cttatgagca
     9421 tgcaacatta aacttcctgt gattaaagtc acaatcattg caggagtttg tatataataa
     9481 taaagctttc tttcttgaat ttttacaacc tcgacaaaac ctttattgtc tttatgttca
     9541 gcatgataca caaaaagacg aggtaaataa aaaagacccg ccatccaaga aacaaatgcc
     9601 aaataatgca cccatttaat ccaaaaataa taatcattaa tccattctgt catctttttt
     9661 ccttttttta aatatttctt gtattaaaat caaagccaca cttatattta tcatgacatc
     9721 tgcaacatta aaaatagcaa aattaaacca tttatgccaa aaaaacatat ccactacacc
     9781 tccatgtata aaacgatcca ataaatttga aacgccggca ccaagcatca ttccaaaagc
     9841 tatgctatga gtttttaaaa gtgttctttg ccaaaaaaga taaataaaaa gcacgccaat
     9901 taaagcaaga tgtaaatatt ttaaattatg ttctaaaaaa ctcaacattg aaaaagctac
     9961 gcctgtattt agagcataag ttaaatctag gtattcactc tgccatctaa atcctgctaa
    10021 agttaaggat tttacccatt gatcaagggc aaaaaccaaa acaaaggcac cccaaaaata
    10081 aaaaataaat ttaaaagttt tagccattta aagctttctt aaaaaactcc acaacatttt
    10141 tcatttcttt ttctaagagc ttaatatctc tggcttctag taaaagtctt atcaaatttt
    10201 ctgttccaga atagcgaaat aaggtattaa tatttttatt ttctaaatct ttttttaatt
    10261 cttttaaacc tttaatttta tctaaatctt ttttttctgc aattttaaga ttgattaaaa
    10321 gctgaggata aggtttaact tgacccaaaa tagaacttgc agattttttc ttagaaagca
    10381 ttaaagcact aaattgcaag gcagctatca aaccatctcc agtttttgca taatcgctaa
    10441 aaataatatg cccactttgt tctccaccaa aatttccacc attggctttt agtttttcaa
    10501 gcacatattt atcgccaaca ttacaagtat caagttctat accatgttta tttaaaaact
    10561 cttttaaagc accattactc attatagtag ccacaacact tgattgtaat ttaccttgtt
    10621 ctttaagata aagtgccaat acacccaata aactatcccc attagccact tcgccttttt
    10681 catctacaac caccaaacga tctgcatcac catcaaaagc aaagcccaca tctgcacgca
    10741 aacgctttac ctcagcagct aagtttacag gatgcaaagc tccacaattt tcattgatat
    10801 taagtccatt aggtttatca ctcattacta taacttcagc gcctaattcc ttaaaaacag
    10861 taggtgctac cttataagct gccccatgag ccacatctaa aacaacacgc aaagacttta
    10921 aagtaagatc ttttggaaaa gaatttttaa tagaaacaat atatcttcct ataacatcat
    10981 caattctttt tgcttgacca attttttcca tatctacctt agaggcttgt ataagcttat
    11041 catcaaaata aatttcttct atttttttct ctatatcttc actgagttta tttccatgag
    11101 catcaaaaaa tttaataccg ttatcataat aaggattgtg agaagctgaa atcataatcc
    11161 ctgcgtcaca acgcatatct tcagttaaga atgcaatcgc aggagttggc ataggaccaa
    11221 tttgtataac attatatcct atagaagtaa gccctgaaac aatagcattt tctatcatat
    11281 agccacttct tcttgtatct tttcctacta agatattatt agtaatactt ttatctttaa
    11341 aataaatacc cgcagccatt gctaaacgca tagccaaaaa actatctaaa aattcacccg
    11401 cttttccacg aactccatca gttccaaaaa gtctcattgc aaacctttct agcaaaattt
    11461 aaagacaatt ataacaaagc taagataaag aaatttaaac aagctctaaa aatagagctt
    11521 gtttggaacc ttatagttca ggtttaggag ttttttcagt agaaatagga agttgtggat
    11581 aaacaattgc tggttttgtt cctgttaagg attttaagaa agtttcaata ctttttgctt
    11641 ctttatcaga aattttaatg ccaagttgca cactacccat ttccttaata gcatctttta
    11701 gattccaaat agcgccatta tgaaaatatg gagcagtttc agcaacattt cttaaagttg
    11761 gagtttttac catgccattt gcatcacctt taaaatcacc taaatttgca aatttatatt
    11821 taccagcaac ttcaaacgct tgcatattgc cacctaaatt cacaccatta tgacaagcta
    11881 cacaaccctt gtctataaaa agctttaagc ctttttgctc ttcttttgtt aaagcttttt
    11941 catcgccttc taaaaattta tcaaaacgag atggagtgat caaggttctt tcaaaatttg
    12001 caattgcatc agcaatattg tcaaaattta caccactttt accatagatt tttttaaact
    12061 cactcacata ttcaggcaat gatgaaattt tttctactgc gagtttagca ggagttgcca
    12121 tttcaggatc agcttggatt ggacctttag cttgatcggc taatgttcct gcacgaccat
    12181 cccaaaattg agtattattt aaaaccgcat tataaactgt tggtgaattt aaatgatggg
    12241 gatttgctgt ccatttatga cctattgcag tactaacccc atctgttcca ccaagtccta
    12301 cattgtgaca ggtattacaa gaaatgatac cactttttga aaggcgtggt tcaaaataaa
    12361 gctttttgcc aagctctgct ttttcaagag taaattcact agcctttact ccattttgtt
    12421 ttaaaatttc atcaacacct ttttgatctt ttggcaaggc aacaagacct gaatttttag
    12481 cttcatctat aagacttgca gcatttaagc ttgaaaaagc aactaaggat gcgattagca
    12541 atgcttttac tttcatttat aaactcctat taaaga
//
LOCUS       DAPIWQ010000039        12493 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.039, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000039 DAPIWQ010000000
VERSION     DAPIWQ010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12493)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12493)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12493
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.039"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            16..525
                     /locus_tag="RJ267_000765"
     CDS             16..525
                     /locus_tag="RJ267_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-/tripeptide transporter"
                     /protein_id="HDV7388641.1"
                     /translation="MFDWKILTNWFQSFNPIFIIILAPIASYIWIFLEKKNIYFSSIG
                     KFTLGILFAGIGFMMMTFASQNLINNNGLPISMAWIIISIFFLTLGELCVSPIGLSIM
                     AKVAPDLIKNQIMGLWFVASALGNFVAGLIGGNVNIKNIDQLPNIFGQCMWMLFVVAL
                     LLFIAKKPS"
     gene            724..2277
                     /locus_tag="RJ267_000766"
     CDS             724..2277
                     /locus_tag="RJ267_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HDV7388642.1"
                     /translation="MSKNVKNLDTSFFGHPKPLLSLSLTELWERFSFYGIRPLLYLFM
                     IASFEKSGMNLKPEEASAIMGIFASCLYLAALPGGWLADNYLGQKRAILLGALTIAFG
                     HLCIAFSYFNNKMIFVGMVFLVIGTGLFKTCASVMVGMLYKKNDARRDSGFTLFYMCF
                     NFGAFVAPLICGFLQKEYGWHFGFGAGGIGMLLAVIIFYLKTMPDLKEFDEKVGIDST
                     WDRPSKKSKNAFYIIIVSGIVLLGAIFLILGGFIKLDAQVINKNIILTILACAGIYFL
                     YLFAFTSLKIEEKRNLIIFIVLFLAAALFWSVYEQQYTSFNFFAEKLTDKTILNYEIP
                     TIWFQSLGGLFVILFAPFSAFIWTICAKNNKEISSIIKFALGLLGAALAFLIMALASN
                     HAISLNGDANTLRENLENSSQIILVSPWCLVSSFLLMVLGELCLSPVGLSIMTKIAPN
                     LIKSQVMGLWFVASALGNALAGFIGGKASEENIAYLPNLFYQCMWILLGAVIILLILK
                     KPINKILKN"
     gene            2293..4083
                     /locus_tag="RJ267_000767"
     CDS             2293..4083
                     /locus_tag="RJ267_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HDV7388643.1"
                     /translation="MSIYKQRVLELRRLMKENNIDAYLILSADPHLSEYLPEYYKNRV
                     FISGFKGSVGTVLITQEEGFLWVDGRYWLQAQKELEGSGILLQKQDAKNTFTKWLEKN
                     LSEDQILGIDFALLPLSLQKDLKINCKANLKHIDLISPLWKDRPTLPQEKIYEHELEY
                     CSYSRKEKLALVRQKMKNLNVTSHLISSLDDIAWLTNLRGNDVNYNPVFLSHLLILED
                     KALLFVDQKKVNSELEKKLNLDGFWLKNYDEIIMELEKLANTNLLIEPSKMTALLINS
                     LDKSVKIIQEINPSTHLKAAKNTKEIAHIQDAMIEDGVALCKFFAWLEEAIKNKELIS
                     ELDIDVKASEFRAQSKYYISDSFATIAGFNENAAYPHYKATKESFAYLKKDGLLLIDS
                     GGQYKNGTTDITRVVPIGKANAEQIHDYTLVLKAHIAISSAIFPKDITMPLLDAITRA
                     PLWKEQIDYIHGTGHGVGYFLNVHEGPQVLSYLSPVLEKTKAKEGMLTSIEPGIYKVG
                     KWGIRLENLVIHTKVENPKNKDFGEFLYFKPVTLCPFEISCIDTKMLDEKEKEWLNNY
                     HKEVFEKLSPKLGDYPKALVWLEKRTKAIF"
     gene            complement(4204..6009)
                     /gene="mrdA"
                     /locus_tag="RJ267_000768"
     CDS             complement(4204..6009)
                     /gene="mrdA"
                     /locus_tag="RJ267_000768"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDV7388644.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKTE
                     FLPPVRGQITDRNGTLLAINDLGFSISIKPYLSIKKSNKGILDKELSELTNLFPDLNA
                     SKLAEIYKRNDSYYNQDFIKVVDFIPYDEIISHYSELNLNKTIKIDPVVKRKYPFGKL
                     ASHIIGYVGKANLQDVQENEIAKLSNYTGKSGIERYYNDILQGEKGTRVYKVNALNQE
                     VEQLSYTPAMSNDIELTIDIELQSYLTSLFEGNAGAAIIMNVNDGSILAAGSFPEYDL
                     NPFVTGISFKDWDELSNSLDHPFTNKLINGYYPPGSVVKMGVGLSFLNSKNISPSTHY
                     VCNGSIELGGRFFRCWNRSGHGPVDLKHAIKYSCDVYFYNGSLQVGIDQISETLSRIG
                     FGVKTGVDLPSEFVGTLPSKEWKMQRYRQSWFQGDTLNTAIGQGNFLATPMQIARYTA
                     QIAKSGEVIPHFLKSIENNNTTIENQMDENKKEIFTLFEKSQLPYIRDAMYAVANEQG
                     GTSYRYLHNLDVKVAAKTGTAQVVGFSQTDKNRVDEKQFEYYTRSHAWLTSYAPYSKP
                     KYVVTVLLEHGGRNITSGATVAKIYQKMIELGYFK"
     gene            complement(6010..6504)
                     /locus_tag="RJ267_000769"
     CDS             complement(6010..6504)
                     /locus_tag="RJ267_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388645.1"
                     /translation="MRRNLSAYKAKFNGAYVFLGFFFLIYQILGSTFAYAPLLYGIFF
                     CYMFCLLEERERTFSKLDFRWYFSLFFLFFTDITYNFFIFSSWLAFFIFYYLCADWIK
                     TNLKIGKFIPVVFVLCAYGIILFLDMILSYIGDEKIKILGWAYIVSVFIECCLAHVFF
                     KGKI"
     gene            complement(6501..7097)
                     /locus_tag="RJ267_000770"
     CDS             complement(6501..7097)
                     /locus_tag="RJ267_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HDV7388646.1"
                     /translation="MIISAKFITSLVKFDENLSSNFSEVAFLGRSNVGKSSLINSLCK
                     QKNLAKSSATPGKTQLINFFEVICRRNEEKFNINFIDLPGFGYAKVSKNLKEIWNQNL
                     DEFLKLRTSIKLFIHLIDSRHTHLEIDVNLNDYLKRFLRPDQKILKVFTKCDKLNQSE
                     KAKLKNEFKGSILVSNLNKFGLDSLEDIIINQTLGLGK"
     gene            complement(7094..7555)
                     /locus_tag="RJ267_000771"
     CDS             complement(7094..7555)
                     /locus_tag="RJ267_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HDV7388647.1"
                     /translation="MVARQIILLLVCVSVTWATQIEVKALNFYSDENKGESILSGNVE
                     VIRGDDILNSEKLIIYTDKNRKPIRYEAMQNARFKIVLKGKTYKGSGDKFIYNVIKDT
                     YEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESKDQKPARFVFDLKDK"
     gene            complement(7537..8052)
                     /locus_tag="RJ267_000772"
     CDS             complement(7537..8052)
                     /locus_tag="RJ267_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388648.1"
                     /translation="MAIKIFGILIALFTITFTILSLQDPYSLNLQTNALNFKNIEAKN
                     LKAYESNTSIIKAYYKANSWVRYADRDEFNDFITLNLDFNLSANRLEFFNKDMSKVLF
                     EGNVTYIGSNNVKIISQEVEYQPKDKILHTNTNFKALINGSIINGNTLNYDVKNKILN
                     IQGVNAWLQDK"
     gene            complement(8043..8531)
                     /locus_tag="RJ267_000773"
     CDS             complement(8043..8531)
                     /locus_tag="RJ267_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HDV7388649.1"
                     /translation="MTELIFLDVDGCLTDGKIIYTSNGEFIKEFNVKDGAAIEAWLKL
                     GKKIAIITGRNCPCVEKRAKDLKIKILYQGIKDKLACAKEILQKLNLDFSQCAAIGDY
                     FNDKALLESVGLSFKPKDGHKDLNVDIVLSKKGGKAAVAQMIEILVEKNHLEEEWNKL
                     WL"
     gene            complement(8537..9364)
                     /locus_tag="RJ267_000774"
     CDS             complement(8537..9364)
                     /locus_tag="RJ267_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HDV7388650.1"
                     /translation="MQIKTITLKLSAVSLGALFFSGCLGTSFFSSLDNAQVYYPSNDF
                     KSSPSSSGTKGTMKPYTINGKTYYPTVVAVGETADGIASWYGPGFHGKKTSNGETYNQ
                     NALTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQIDMIAS
                     GTAPVRLEVIGFGSSNSGNNIVHSNVNYGNSGEIANNGQIYEGGNFMVQIGAFKNPAG
                     AQTIAARYKTYRTYSSTIRTSSVDGLNRVFLTGFRSEDEARDFAASGAFAGAFVVRE"
     gene            complement(9324..10442)
                     /locus_tag="RJ267_000775"
     CDS             complement(9324..10442)
                     /locus_tag="RJ267_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HDV7388651.1"
                     /translation="MKKILLCFLICFNFLFAQINTPEFYERQMNVLRNLDINPSFISD
                     LIFVQTQQDIKSKHAQTLIDSMQNFSKVTPMIRKILAQQEVPDEILYLAMVESGLKTH
                     SVSNAKAVGVWQFMQPTARNLGLRIDAYVDERRDPVKSTYAATNYLKELKEEFGKWYL
                     ALLAYNCGNGKLRQAIKQAGSDDLSVLLNPDKKYLSLETRNFIRKILTLAFLANDRDF
                     LLDKDASLMNYALSNEFAKVDVPSSASLKEIAKNLNMDLATFKKYNPQFKHNFTPPGK
                     GYYMYIPLNKVAFFDKNFKAEKLAKVDTTIPMTRTYTVKSGDSLYKIAKNYNISVDEI
                     REFNKIAKNHLSINQKLIIPIKENKNANKNNYTKVVSR"
     gene            complement(10442..11257)
                     /locus_tag="RJ267_000776"
     CDS             complement(10442..11257)
                     /locus_tag="RJ267_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HDV7388652.1"
                     /translation="MFLNLDFQDGLRIVDTHCHLDSEAFKDDLDETLNRAFKNGIEKI
                     IIPGADIKDLPYAATIAHKYKNIFFAAGVHPYEIDNYDEKILRQYLCDEKCVAVGECG
                     LDYFRFKSDLAEEIQKEKENQKKIFIAQLELAIEFKKPVIIHSREANHDTYEILHGYS
                     KDLVGGVLHCFNASEHLLTLFEEGFYFGIGGVLTFKNAKKLVEILPKIPKDKLLLETD
                     APYLTPEPYRGKRNEPLLTQFVVNKMCEVLNLSRKELLEICFNNSEKLFFKGY"
     gene            complement(11248..12492)
                     /gene="cbrR"
                     /locus_tag="RJ267_000777"
     CDS             complement(11248..12492)
                     /gene="cbrR"
                     /locus_tag="RJ267_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile resistance response regulator CbrR"
                     /protein_id="HDV7388653.1"
                     /translation="MNKKILIIDDNKMLGKLLAKKIQMTLDYEVDIAFGFAEAKELMN
                     NDYFLAFVDLCLPDAPNGEVVDYVIEKKIPAIVLTASGDKATKEKFMDKDILDYIFKE
                     SETCIDEIISSIVKLNQYAKTKVIVAMSKLPERNEIKKILTQRQFNVLAAAHGEEAMS
                     YLNDNNDVKLIIADVNMPVISGFELLTQVRERFSDDELGVILLGDHNDSFEANSFKNG
                     VNEYLFKPLSKESFNCRLDRCLSYMDDKKFLSTYNVLDPVSGVKNYNALIDGIDDYFN
                     EIATKDEEFAFAFLDIDNLQMINDEYGREVGDEVIKICANEIVNETKGRDLVGRYSAE
                     KICILLKNISQERAIKIFSRIRVNIKKAGVLVNLDEVFFTASIGVVFGKSGDKIDSLA
                     DKASKILSQAKDNGKDRVEVCS"
BASE COUNT         4366 a         2105 c         1613 g         4409 t
ORIGIN      
        1 tttacaaata gaaatatttt tgattggaaa attctaacaa actggtttca atcttttaat
       61 ccaattttta tcatcatact tgctcctata gcaagttata tttggatatt tttagagaaa
      121 aaaaatatat atttttcttc cattggaaaa tttactttag gaatattatt tgccggtatt
      181 ggttttatga tgatgacctt tgcttcacaa aatctaataa acaacaatgg tttgccaata
      241 tccatggctt ggattatcat aagtatattc tttttaacac ttggggaatt atgcgtgtct
      301 cctattggac tctctataat ggctaaggtt gcccctgatt taatcaaaaa tcaaatcatg
      361 ggactttggt ttgtagcaag tgcgcttgga aattttgttg caggacttat aggaggaaat
      421 gtcaatatta aaaacatcga tcaacttcct aatatttttg gacaatgcat gtggatgctt
      481 tttgttgtag cacttttgct ttttattgct aaaaaaccat cttaacaaaa aaaataagca
      541 attatctaac taaacttaaa atacaaaata caccaaagtt gaaaattgat cttaatattt
      601 ctttttttat atttgcaaaa aagtaacatt atgatataaa tcatttaaaa atattacaaa
      661 gttatacata ttttttaatt tcttgtctat aatttataaa taaaaataca caaaggatat
      721 aaattgagta aaaatgtaaa aaatttagat acttcatttt ttggacatcc aaaaccactt
      781 ttatctcttt cacttactga gctttgggaa agattttctt tttacggaat tcgtcccttg
      841 ctttaccttt ttatgatagc aagttttgaa aaaagtggaa tgaacttaaa acctgaagaa
      901 gcaagtgcaa ttatgggaat ttttgcaagt tgtttatatc ttgctgcttt gccaggtgga
      961 tggcttgcgg acaattactt aggacaaaaa agagcaattt tactaggtgc tttaactata
     1021 gcatttggac atttgtgcat agccttttct tattttaaca ataaaatgat ttttgttggt
     1081 atggtttttt tggttatagg tacaggactt tttaaaactt gtgcttctgt aatggttgga
     1141 atgctttata aaaaaaatga tgcaaggcgt gactctggtt ttactctttt ttatatgtgc
     1201 tttaattttg gtgcttttgt agctccttta atttgcggct ttttacaaaa agaatacgga
     1261 tggcattttg gttttggtgc aggtgggatt ggtatgcttt tagcggtaat tattttctac
     1321 ctaaaaacta tgcctgattt aaaagaattt gatgaaaaag ttggcataga ctctacttgg
     1381 gatagaccaa gcaaaaaaag caaaaacgca ttttacatca tcattgtatc aggtattgtt
     1441 ttgcttggag caatattttt aatccttggt ggttttataa aattagatgc acaagttatt
     1501 aataaaaata ttattctaac tatcttagct tgtgctggaa tttatttttt atatcttttc
     1561 gcttttactt ctttaaaaat agaagaaaaa agaaatttaa ttatttttat tgttttattt
     1621 ttagcggctg cgttattttg gtcagtatat gagcaacaat acacttcttt taattttttt
     1681 gcagaaaaat taacagataa aaccatatta aattatgaaa ttcctacaat atggtttcaa
     1741 tctcttggag gtttatttgt tatacttttt gcacctttta gtgcttttat atggactata
     1801 tgtgccaaaa ataataaaga aatttcatct attattaaat ttgcattagg acttttgggt
     1861 gcagctttgg catttttaat aatggcttta gcttcaaatc atgcaattag tttaaatggc
     1921 gatgctaata cattaagaga aaatttagaa aattcatcac aaattatttt agtttcacct
     1981 tggtgtcttg tcagtagctt tttgcttatg gttttaggag agctttgcct ttcccctgtg
     2041 ggactttcta taatgacaaa aattgcacct aatttaatta aatctcaagt catgggactt
     2101 tggtttgtag caagtgcatt aggcaatgct ttagctggat tcataggtgg taaagcaagt
     2161 gaagaaaata tagcttattt gccaaattta ttttaccaat gtatgtggat attacttggt
     2221 gctgttataa ttttacttat actcaaaaaa cctatcaata aaatactaaa aaattaatat
     2281 taaggagaaa atatgagtat ttacaaacaa agagtattag aacttagaag attaatgaaa
     2341 gaaaataata ttgacgccta tctcatctta agcgcggatc cgcatttgag cgaatattta
     2401 ccagaatatt acaaaaacag agtctttatc agtggcttta agggttctgt tggaacagtt
     2461 cttatcacac aagaagaggg ctttttgtgg gtagatggaa gatattggct tcaagcacaa
     2521 aaggaattag aaggtagtgg catactttta caaaagcaag atgctaaaaa tacttttacc
     2581 aaatggttgg aaaaaaattt aagcgaagat caaattttag gcatcgattt tgcactttta
     2641 cctttatctt tgcaaaaaga tttaaagatt aattgcaagg caaatttaaa acatatagat
     2701 ttgataagtc cactttggaa agatcgtccc actttaccac aagaaaaaat ttatgaacac
     2761 gaactagaat actgctctta ctcaagaaaa gaaaaattag cattagtgcg tcaaaaaatg
     2821 aaaaatttaa atgttacctc tcatttaatc tccagccttg atgatatagc ttggcttaca
     2881 aatttaagag ggaatgatgt aaattataat cctgtatttt taagtcattt gctaatcttg
     2941 gaagacaaag ctttgctttt tgttgatcag aaaaaagtaa attcagaact tgaaaaaaaa
     3001 ttaaatttag atgggttttg gcttaaaaat tatgatgaaa tcatcatgga gcttgaaaaa
     3061 cttgcaaata caaatttgct tattgaacct tcaaaaatga ccgctttact cataaattct
     3121 ttagataaaa gcgtaaaaat cattcaagaa attaatccaa gcactcactt aaaagcagct
     3181 aaaaatacaa aagaaatagc gcatatacaa gatgctatga tagaagatgg agtggcttta
     3241 tgtaaatttt ttgcctggct tgaagaagcg ataaaaaata aagaactaat aagcgaatta
     3301 gacatagatg ttaaagcaag cgaatttaga gcacaaagca agtactacat aagtgatagt
     3361 tttgccacta tagcaggctt taacgaaaat gcagcatatc cacattataa agccacaaaa
     3421 gagagttttg cttatcttaa aaaagatggg cttttactta ttgattctgg tggacaatat
     3481 aaaaacggca caacagatat tacacgcgtt gtaccaatag gaaaggctaa tgcagaacaa
     3541 attcatgact ataccttggt tttaaaagca catattgcca tttccagtgc aatttttcca
     3601 aaagatataa ctatgccctt acttgatgca atcacacgcg cacctttatg gaaagaacaa
     3661 attgactata tacacggcac aggacatggc gtgggatatt ttttaaatgt ccatgaaggt
     3721 ccacaagttt tatcttatct atcccctgtg cttgaaaaaa caaaagccaa agaaggtatg
     3781 ctaacctcca tagagccagg tatttataaa gtaggtaaat ggggtataag acttgaaaat
     3841 ttagttattc ataccaaagt agaaaatcct aaaaataaag attttggaga gtttttatac
     3901 tttaaacctg ttactctttg tccttttgaa atatcttgta ttgatacaaa aatgttagat
     3961 gaaaaagaaa aagaatggtt aaacaattat cacaaagaag tatttgaaaa actttctcct
     4021 aagctaggtg attatccaaa agctctagtt tggcttgaaa aaagaacaaa agccatcttt
     4081 taagatactt ttgttaacat agataaattt tccttgtatt aaacttataa tttgtttaat
     4141 acaagatttt taaaccaatt gctaaaaaag ttttttttga aaaactcaat ttacaactaa
     4201 aaattattta aaatatccaa gttcaatcat tttttgataa attttagcta cagttgcccc
     4261 tgaagtaata tttctcccac catgttccaa aagaacggta actacatatt ttggcttaga
     4321 ataaggagca taagaagtaa gccacgcatg agatctagta taatactcaa attgtttttc
     4381 atcaacccta tttttatctg tttgtgaaaa tcccacaacc tgagcagttc ctgtttttgc
     4441 tgcaactttc acatcaagat tatgcaaata acgataagag gttcctcctt gctcattagc
     4501 aacagcatac attgcatctc ttatataagg caattgactc ttttcaaata aagtaaaaat
     4561 ttctttttta ttttcatcca tttgattttc tatagttgta ttattatttt ctatgctttt
     4621 taaaaaatga ggtataacct ctccactttt tgcgatttga gccgtatatc tagcaatttg
     4681 cataggtgtt gcaagaaaat taccttgacc tatagctgta tttaaagtat caccttgaaa
     4741 ccaagattgt ctatatcttt gcatcttcca ttctttgctt ggtaaagttc ctacaaattc
     4801 actaggtaaa tctacccctg ttttcactcc aaagccaatg cgagataaag tttcacttat
     4861 ttgatcgatt ccaacttgca aactgccatt ataaaaataa acatcacaac tatattttat
     4921 cgcatgtttt aaatccacag gtccatggcc tgatcgattc caacatctaa aaaacctgcc
     4981 tccaagctca atgcttccat tgcaaacata atgagtcgac gggctaatat ttttagaatt
     5041 taaaaaagaa agccctactc ccatttttac aacagaacct ggaggataat atccatttat
     5101 aagtttattt gtaaaaggat gatcaagact atttgaaagc tcatcccaat ccttaaaaga
     5161 aatccctgtt acaaaaggat taagatcata ttcagggaaa ctccctgcag ctaaaataga
     5221 tccatcattt acattcataa ttatagcagc tccagcattc ccttcaaaca atgaagttaa
     5281 ataagactga agctctatat ctatcgtaag ttctatatca ttagacatag caggagtgta
     5341 agaaagctgt tctacttctt gatttaaggc attaacctta taaaccctag ttcctttttc
     5401 tccttgtaaa atatcattat aatagcgttc tataccgctt tttcccgtat agttagaaag
     5461 ttttgctatt tcattttctt gaacatcttg caaatttgcc ttacctacat acccaataat
     5521 atgcgaagct aattttccaa aaggatattt tctttttaca acaggatcta tttttattgt
     5581 tttattaaga tttaactctg aataatgcga aataatctca tcatagggta taaaatctac
     5641 tactttaata aaatcttgat tatagtaaga atcatttctc ttataaattt ctgctaattt
     5701 actagcattt aaatcgggaa ataaatttgt aagttcagat aattctttat ccaaaattcc
     5761 tttatttgac tttttaatac tcaaataagg tttaatagaa atactaaaac ccaaatcatt
     5821 aatagccaat aaagttccat ttctatctgt aatttgaccc ctaacaggtg gcaaaaattc
     5881 agtttttatg gcattttgtt tagcaagctc ttcataatat acatttgatt ttatactcaa
     5941 ataatacaca cgacttaata aaaatataaa aaacaatagt ataaatccaa caactaaacg
     6001 cattctcatt taaattttac ctttaaaaaa cacatgagct aaacaacatt ctataaaaac
     6061 tgaaacaata tacgcccatc ctaaaatttt aattttttca tctccaatat aagacaatat
     6121 catatccaaa aacaaaataa tgccgtaagc acaaagcaca aaaacaacag ggataaattt
     6181 accaattttt aaatttgtct taatccaatc tgcgcaaaga taataaaaaa taaaaaatgc
     6241 caaccaagat gaaaaaataa aaaaattata agttatatca gtaaaaaata aaaaaaataa
     6301 agaaaaatac catctaaaat caagctttga aaaagttctt tctctctctt ctagtaagca
     6361 aaacatataa cagaaaaaaa tcccataaag taacggagca tatgcaaaag tcgaaccaag
     6421 aatctgatag attagaaaaa aaaatcctaa aaagacataa gctccattaa attttgcttt
     6481 ataagcactt aaatttcttc tcatttacca agacctaaag tttgattgat aataatatct
     6541 tccaaagaat caaggccaaa tttattcaaa tttgaaacta aaatagagcc tttaaattca
     6601 ttttttaact tagctttttc actttgattc aatttatcgc atttggtaaa aacttttaaa
     6661 attttttgat caggtcgtaa aaatcttttc aaatagtcat ttaaatttac atcgatctct
     6721 aaatgagtat gtcttgaatc gattaaatgt ataaataact ttatcgaggt tcttaatttt
     6781 aaaaattcat ctaagttttg attccatatt tcttttaaat ttttagaaac ctttgcataa
     6841 ccaaaccctg gcaaatcgat aaaattgata ttaaattttt cttcatttct tctgcaaatt
     6901 acttcgaaaa aatttataag ctgagttttt ccaggagttg ccgaactttt ggctaaattt
     6961 ttttgtttac acaaagaatt gattaaagaa ctttttccga cattagaacg ccccaaaaat
     7021 gctacttcac taaaatttga gctcaaattc tcatcaaatt tcactaaaga agtgataaat
     7081 ttagcactaa ttatcatttg tctttaagat caaacacaaa acgagcaggt ttttgatcct
     7141 tactctccac tcgataaata ttagcttttc tatcgactat tattttatca ccaaaaagtt
     7201 tttgattgct tccaagctca tttatataag catgaccatt aatctcgtaa gtatctttaa
     7261 taacattata aataaattta tctccactac ctttataagt tttacctttt aaaacaatct
     7321 taaacctagc attttgcatt gcttcataac gaataggttt gcgattttta tccgtataaa
     7381 taatcaattt ttcagaattt aaaatatcat cacctctaat tacttctaca tttccactaa
     7441 gaatactttc acccttattt tcatctgagt aaaaatttaa agcttttact tcaatttgag
     7501 ttgcccaagt tacacttaca caaactaaca ataaaattat ttgtcttgca accacgcgtt
     7561 tactccttgg atatttaaaa ttttgttttt tacatcatag tttaaagtat ttccgttaat
     7621 aatacttcca ttgatcagag ctttaaaatt agtatttgtg tgtaaaattt tatccttagg
     7681 ttggtattct acctcttgag aaataatttt gacattatta gaacctatat aagtaacatt
     7741 tccttcaaac aaaaccttgc tcatatcttt attgaaaaac tctaaacgat tcgcgctaag
     7801 attaaaatct aaatttaaag taataaaatc attaaattca tctctatctg catatctcac
     7861 ccaagaattt gccttataat atgccttaat tatactagta ttactctcat aagctttcaa
     7921 atttttagcc tcaatatttt taaaatttaa agcattagtt tgcaaattca aagaatacgg
     7981 atcttgcaaa cttaaaatcg taaaagtaat tgtaaaaaga gcaattaaaa ttccaaaaat
     8041 ttttatagcc aaagcttatt ccattcttct tctagatgat ttttttctac taaaatttct
     8101 atcatctgtg ctacagcagc cttaccacct tttttgctaa gcactatgtc tacatttaaa
     8161 tctttatgac catcttttgg cttaaaacta agtcctacac tttcaagcaa agccttatcg
     8221 ttaaaataat ctccaatagc cgcacactga gaaaaatcta aattaagttt ttgtaaaatt
     8281 tcttttgcac aagctaactt atccttgata ccttgatata aaatttttat ttttaaatct
     8341 ttagctcttt tttcaacaca aggacaattt ctacctgtaa taatagcaat ttttttacca
     8401 agctttagcc aagcctcgat agccgctcca tcttttacat taaattcttt aataaattct
     8461 ccattagaag tataaataat cttcccatca gttaaacagc catctacatc caaaaaaatc
     8521 aattctgtca taatttctac tctcttacaa caaatgcacc tgcaaatgca ccacttgcag
     8581 caaaatccct tgcttcatct tcacttctaa agcctgttaa gaaaacgcga tttaacccat
     8641 ccactgagct tgtgcgtata gtagagctat aagttctata agttttatat cttgctgcta
     8701 tcgtttgtgc tccagctggg tttttaaagg ctccaatttg aaccatgaaa tttccacctt
     8761 cataaatttg tccattattt gcaatctctc cactatttcc atagtttaca ttagaatgta
     8821 caatattatt acccgaatta cttgatccaa accctataac ctcaagcctt actggagctg
     8881 ttcctgaagc aatcatatca atttgactag cagctccttt tgataaatct ataatacgat
     8941 tatttacaaa aggacctcta tcattcacac gaacggtaac ttgacgattg ttatttagat
     9001 tggttacttt taagatggta ttcataggta aagttttatg agccgcggtt aaagcatttt
     9061 gattataggt ttcgccatta gaggttttct tgccgtgaaa gcctggccca taccaactcg
     9121 caataccatc agcagtttcg cctactgcta caacagtagg ataataagtt ttaccgttga
     9181 tagtataagg cttcattgtt cctttagtcc ctgaagaact aggactgctt ttaaaatcat
     9241 ttgaaggata atacacttga gcattatcca agctagaaaa aaaactagtg cctaaacaac
     9301 cactaaaaaa taaagcccct agactaacgg ctgacaactt tagtgtaatt gtttttattt
     9361 gcatttttat tctccttgat tggtataatt aatttttgat taatgctaag atgatttttt
     9421 gctattttat tgaattctcg aatttcatca acacttatat tataattttt tgctatttta
     9481 tataaagagt caccagactt aacggtataa gttcttgtca taggtatagt tgtatcaacc
     9541 ttcgcaagtt tttctgcttt aaaattttta tcaaaaaatg ctactttatt aagtggtata
     9601 tacatataat accctttacc aggaggcgta aaattatgtt taaattgtgg attatatttc
     9661 ttaaaagttg caagatccat atttaaattt ttagctattt cttttaaaga tgcagaagaa
     9721 ggcacatcaa cttttgcaaa ttcattgctt aaagcataat tcattaaaga cgcatcttta
     9781 tctagtaaaa aatccctatc attagctaaa aaagcaagcg ttaaaatctt tcttataaaa
     9841 tttctagttt ctaaagaaag atatttctta tcagggttca ataaaacact taaatcatca
     9901 cttcctgctt gcttgatagc ttgtcttagc ttgccatttc cgcaattata agctaaaagt
     9961 gctaaatacc atttgccaaa ttcttctttt aactctttta aataatttgt agcggcataa
    10021 gttgacttga ccggatcacg cctttcatca acataagcat cgattcttaa acccaaattt
    10081 ctagctgttg gttgcataaa ttgccaaacc cctacagcct tggcattaga aacactatga
    10141 gttttcaagc ctgattcaac catagctaga tacaaaatct catcaggaac ttcctgctgg
    10201 gctaaaattt ttcttatcat aggagtaact tttgaaaaat tttgcatact atctattaaa
    10261 gtttgagcat gttttgattt tatatcttgt tgagtttgca caaaaatcaa atcactaata
    10321 aaacttggat taatatctaa atttcttaaa acattcattt gtctttcata aaattcagga
    10381 gtattaattt gcgcaaaaag aaaattaaag catattaaaa aacacaataa aatttttttc
    10441 attaataacc tttaaaaaat aatttttcag aattgttaaa acaaatttct agaagctctt
    10501 ttcttgataa attcaatact tcacacattt tgtttactac aaattgagtt aacaaaggtt
    10561 catttctttt accacgataa ggctctggag taagatatgg agcatcagtt tcaagtagta
    10621 gtttatcttt tggaatttta ggcaaaatct caactaattt cttagcattt ttaaaagtta
    10681 aaactccccc aataccaaaa taaaatccct cttcaaaaag agttagcaaa tgttcgcttg
    10741 cattaaagca gtgtaaaact cctcctacaa gatccttaga atacccatgt aaaatctcat
    10801 aagtatcatg atttgcttct cttgagtgaa tgataacagg ttttttaaat tcaatagcaa
    10861 gctcaagctg tgcaataaaa atcttttttt gattttcttt ttctttttga atttcttcag
    10921 caagatcact tttaaaacgg aaataatcaa gcccacattc acctacagct acacactttt
    10981 catcgcataa atactgtctt aaaattttct catcataatt atcaatttca taaggatgca
    11041 cccctgctgc aaaaaaaata tttttatatt tatgagcaat tgtagctgca taaggcaagt
    11101 cttttatatc agcaccaggt atgatgattt tctctatacc atttttaaaa gcacgattta
    11161 aagtttcatc taaatcatct ttaaatgctt cactgtctag atggcaatgc gtatcaacaa
    11221 tccttaaacc atcttgaaaa tcaagattta agaacatact tcaactctat ccttgccatt
    11281 atcttttgct tgagacaata ttttacttgc tttatcagcc aaagaatcaa tcttatctcc
    11341 actttttcca aaaaccacgc ctatagaagc tgtaaaaaag acttcatcta aattaactaa
    11401 aacaccagcc ttttttatat ttactcgtat acgagaaaag attttaatcg ctctttcttg
    11461 ggatatattt ttaagcaaaa tacaaatttt ttctgcacta tatctaccta caagatctct
    11521 tcctttagtt tcattgacta tttcattggc gcagatttta attacttcat caccaacttc
    11581 acggccgtat tcatcgttaa tcatttgaag attatctata tctaaaaaag caaaagcaaa
    11641 ttcctcgtct tttgttgcta tttcgttaaa ataatcatct attccatcaa ttaaagcatt
    11701 ataattttta accccagata caggatctaa aacattataa gtgcttaaaa attttttatc
    11761 atccatgtaa gataaacaac gatctaagcg acaattaaaa ctttccttgc ttaaaggctt
    11821 aaacaaatac tcattaactc catttttaaa agaattcgct tcaaatgaat cattatgatc
    11881 ccccaaaaga atcacaccta attcatcatc actaaaacgt tctcttactt gagtcaaaag
    11941 ctcaaaaccg ctaattactg gcatattgac atctgctata ataagcttaa catcattatt
    12001 atcatttaaa taactcattg cttcttcacc atgagccgca gctaaaacat taaattgtct
    12061 ttgagtaagt atttttttaa tttcattacg ttcaggtagc ttgctcatag ctacaatcac
    12121 tttagttttt gcatattgat taagttttac aatagaacta ataatctcat caatgcaagt
    12181 ttcactttct ttaaaaatat aatctaatat atctttatcc ataaattttt ctttagtagc
    12241 cttatcacca ctagccgtaa gaacaatagc aggaattttc ttttctataa cataatccac
    12301 aacttcacca tttggggcat ctggcaagca taaatccaca aaagctaaaa aataatcatt
    12361 attcattaac tccttagctt cagcaaaacc aaaagcaata tctacctcat aatctaaagt
    12421 catttgaatt tttttagcca aaagtttgcc gagcatttta ttgtcatcaa taattaaaat
    12481 tttcttattc ata
//
LOCUS       DAPIWQ010000040        12300 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.040, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000040 DAPIWQ010000000
VERSION     DAPIWQ010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12300)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12300)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12300
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.040"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            63..728
                     /gene="dccR"
                     /locus_tag="RJ267_000778"
     CDS             63..728
                     /gene="dccR"
                     /locus_tag="RJ267_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DccR"
                     /protein_id="HDV7388654.1"
                     /translation="MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYE
                     RYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIK
                     KPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGY
                     CYG"
     gene            721..1911
                     /gene="dccS"
                     /locus_tag="RJ267_000779"
     CDS             721..1911
                     /gene="dccS"
                     /locus_tag="RJ267_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HDV7388655.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLTIFFALWYQKLYEELVVLKGATL
                     RENHRNIVISILNSRFTPIDISAKNIAQSTALKFAIFDVKKIVFSNIDFDLRKAKIEL
                     KGRGICDNKVFFLAPMSADHYFLRHASNEEVNTNDGLQILIQGEDVGKDLFWIRTKVF
                     GFAIMAFCILGLISYILVKIALKPLEDKISTLNRFIKDSTHELNTPLSVILMSIEQLE
                     HQNLGDNAKFTRIKLAAKSLSQVYSDLVFYNFPNTLETEKQKFDLRILLEERLEYFKV
                     FFEQKKITLKLDLNQANIFAPKSQISKLIDNLISNAIKYNKKGGVISIILKANFLSIA
                     DTGCGISKSNLNHIFDRYTRFNTDQGGFGIGLSLVKKVCDDNDIKIICESVENQGSVF
                     KLNW"
     gene            complement(1954..3591)
                     /gene="groL"
                     /locus_tag="RJ267_000780"
     CDS             complement(1954..3591)
                     /gene="groL"
                     /locus_tag="RJ267_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HDV7388656.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPY
                     ILLFDKKITNLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPTMPDMSGMGGMGGMGGMM"
     gene            complement(3613..3873)
                     /gene="groES"
                     /locus_tag="RJ267_000781"
     CDS             complement(3613..3873)
                     /gene="groES"
                     /locus_tag="RJ267_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HDV7388657.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK"
     gene            4035..6575
                     /locus_tag="RJ267_000782"
     CDS             4035..6575
                     /locus_tag="RJ267_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388658.1"
                     /translation="MKKIFYGVIAFVVVLLIAIYTILFTSFGNNIVANIAQKKIKESA
                     GLDVNITHFNLRFSSLELQANIANMADFNLKGALSPFKLGFDLDYLISLNQNYAKNLG
                     LNLNQNLSFGGKIQGKASDFTLDGKGYLLGSNVLLNARMYNYSPIALNLDAQNLKIEE
                     ILHLLSYPSYAKGFLNAQAKISAQNLKPDGNIIIKLDTSYINYEAIKKDVSLDLPLNS
                     NPKAEILANVKEDKIYAVSKIYNDYLNLQTQKTLYDISKNALSTDFNLSIPSLVKLEK
                     LTKTRLNGSLDVIGQTSVVNNALSSLNAQVIGLGGEVKASLKNNKIFADINEASLEKL
                     LALAGYGALVSGNLNAKLLNADLDFSNFDLEAKINNAKINTNELKKIAKIELPNAIFS
                     FDAKANAKNSNISYNALLASNLLNIKKLQGTYNLKNSELNTDLNAFIDDLSQFSAIAG
                     QKLQGKADLTAKAHIIGTQVQNLNANANLADGVIKADSNGKKLDLNIDKLDLSKLFVI
                     TGMPNYASGIVNAKVNLDNIDFNNLNGKANLEAKGILNAATLSKILNKNFPNNTSYDL
                     NTKINFKNNIAQFDSVLNSSLADLTKLQGSFDISKMLLNSDFNLKINDFSKLGFLLDR
                     KLKGKAEFNGKVGFDKNLNFVVNSPNLFEGKLQSTFKDNLLLADLNGVDLSSLAQGLD
                     FMDIYQGKADMKADYNLLSEEGEVNLDMKEGKLKPNLITNALKILTLKDITNDVYRTA
                     NAKALIKKENIKLNLNMQADRSYILVQSGALNSKSGALNLPFDIKLDRANFKGSITGT
                     TENPKVNLNAGSVLNSIKNVVGGGVSDGAKSTGDKVDKAVNKLLNKIF"
     gene            6584..7195
                     /locus_tag="RJ267_000783"
     CDS             6584..7195
                     /locus_tag="RJ267_000783"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HDV7388659.1"
                     /translation="MFNGLIREIAKVQSYQNNTLSLKAKYRPNLGDSIAVNGACLSVT
                     KLYEAGFEVELSRESRTHMAIENLKDKVHIEPALRYGDRIDGHLMQGHIDFIGTLEKI
                     QKDENGVDFHISLPKEAMKFMAEKGSIAVDGVSLTINEILKNGIRLTIIPITFKETLF
                     KDYQVGRKINIESDLLARYIYAQLQGKNKGLSWEEVERISYLY"
     gene            7159..7839
                     /locus_tag="RJ267_000784"
     CDS             7159..7839
                     /locus_tag="RJ267_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase family protein"
                     /protein_id="HDV7388660.1"
                     /translation="MGRSRKNFLSLLENDKVGIFCAFDKDYNVFRAKIHNENLFSHLG
                     FKDIEKCVFMDQIHSHKVIIYDENLKNLSCDGLISKEKNIALCVLSADCLPLILYHES
                     GIIAALHSGRKGSFENILKECVDQITMQNSHLDKNKFHLFILPGICAKNYEIDGEILE
                     FAKKEFKEFVQDDKLDLKALVKFQAQNLGIENIKDCGICSFDDESFFSYRRDKTTKRF
                     VSVVYLKD"
     gene            7841..8044
                     /locus_tag="RJ267_000785"
     CDS             7841..8044
                     /locus_tag="RJ267_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388661.1"
                     /translation="MYERKDLRVLKIIQKAREFGDGDLLNEALVKQLIDADFCEINEK
                     EKEELATLLHSLINAKDKALLSN"
     gene            complement(8041..9201)
                     /locus_tag="RJ267_000786"
     CDS             complement(8041..9201)
                     /locus_tag="RJ267_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDV7388662.1"
                     /translation="MKKLLLLFIFVVQSFAALSVEELTWDNGDTLLKFLQRNSIPMSL
                     YYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLIPISDDLQIHIYKDKDGQYTLAF
                     TPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRAFRGSINFRNIQKGDEVTL
                     YYEQKRRMGKLWGDINIKMAMVEINKSAREVFSYNDIFYDRDGKELESFLLTKPVNYT
                     RISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGVVTFIGTKGGYGNVIQIK
                     HDSGYMTLYAHLSRFAKIKNGQKVNQGQVIAYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKAKENFKHIIAGYEQVVKEALASNQPNPPKEEDFENYIEF"
     gene            9323..10048
                     /locus_tag="RJ267_000787"
     CDS             9323..10048
                     /locus_tag="RJ267_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HDV7388663.1"
                     /translation="MFKTIVCFLALNLSLFAVGFDLKPIKSELVKVDDIYGYIKDSDD
                     IKLYSSGVVVQHFSNSQSIIARASVIDKKNGLAKLEFSVFSALKQDALPLPNVLPKVG
                     DEVVLNFLYDRGLVIAPDEQTYNELVREFPQIYFTHIDIFGAQLIRTATLSPKRSDFR
                     QFCDDNAVGILVVALENHAEVVDCQDFNKLYEVPISKPTSVQVPFYSRIGGYKSNFFD
                     FNSQEIGNYYRYYDALINLPKVQ"
     gene            10051..11433
                     /locus_tag="RJ267_000788"
     CDS             10051..11433
                     /locus_tag="RJ267_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDV7388664.1"
                     /translation="MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDIARILKFCNENNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLPSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLKLIPLPKF
                     KKTAFAIFPSVKSAMNAVYKSLASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAIL
                     IADVDGNVKEAIDEDLRNLEHYFLEAGASEFKIAKDEQETADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPTLLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQ
                     VKKGYEAVEEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            11437..12243
                     /locus_tag="RJ267_000789"
     CDS             11437..12243
                     /locus_tag="RJ267_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HDV7388665.1"
                     /translation="MKNFFTILLNLRDKEILNYAAALSFYTVLSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQVIFAFLIPTQQDVVATYIDTFLKNSVNLGIVGLIAMAFTSLAFFS
                     GYDFVINRITKNEPKGLWQSISSYWTLLTLVPLGLGLSFYISGFIQQTLDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSVHKGTLKSLALVSFGAGTIWYIGKNLFVYYVVYNKTYA
                     SVYGSFSTILFFFIWIYISWIIYLFGLKLYYFLNHNHNEGNKIRKNTKKS"
BASE COUNT         4176 a         1671 c         2061 g         4392 t
ORIGIN      
        1 tgataagaat tttgatacaa tgatatatat ttaagagatt tgaagttaga aagatttaaa
       61 ttatggctgc taaaatttta cttttagaag atgatttgag cttgagtgag atcattgaag
      121 agtttttaaa cgatgaggga tatgaagtat ttttatgcga taatgcgcaa gaagctttag
      181 atatggctta tgaaagatat tttgatcttt ggattttaga tgtaaaagtt cctttaggag
      241 atggattttc attacttaaa gaattaagaa aaagcggaaa gcaaactcca gcaattttca
      301 tgacttcttt aaacacaaca aacgatttaa aacaaggctt tgacgcaggt tgtgatgatt
      361 atataaaaaa accttttgaa cttgccgagt tatctatcag ggttaaagct ttgcttaaaa
      421 gagctttttc acataaaaat gaagattttg aagatttagg agatggattt agatttgaat
      481 ttactacaca aattctttac cataataata aagccttgac tttaccgagt aaagaaatta
      541 agcttttgtc tttattactt aaaaataaaa acaacttttt aagtacagag agaatttttg
      601 aagaactctg ggattatgat gaggagccta gtgagctaag tttaagggct tatgtgaaaa
      661 atttacgtaa aattttagga aaagaaaaaa ttataaatca aagaggcagg ggatattgct
      721 atggctaaaa aagtcattag gcaaatttta ttaatctacc taacaactac aggtattttt
      781 ttaactattt tttttgcatt atggtatcaa aaattatatg aagaattagt tgttttaaag
      841 ggtgccactt tgagagaaaa tcatagaaac attgttataa gcatcttaaa ttctcgtttt
      901 acccctatag atataagtgc aaaaaatatt gctcaaagca cagcactaaa atttgctata
      961 tttgatgtta aaaagattgt ttttagtaat atagattttg atttaagaaa ggcaaagata
     1021 gagcttaaag gtagaggtat ttgtgataat aaggtttttt tccttgcccc tatgagtgca
     1081 gatcattatt ttttaagaca tgctagcaat gaagaagtaa atactaacga tggtttgcaa
     1141 attttaatac agggtgaaga tgttggcaaa gatctttttt ggattagaac gaaagttttt
     1201 ggttttgcta ttatggcttt ttgcatattg ggtttaatat cttatatttt agtaaaaatt
     1261 gctctaaagc ctttggagga taaaatcagc acactaaatc gttttattaa agattcaact
     1321 catgaactca ataccccatt aagtgttatt ttgatgagta tagaacaact tgagcatcaa
     1381 aatttaggag ataatgctaa atttacaagg attaagcttg ctgcaaaaag tttgtctcaa
     1441 gtgtattctg atcttgtttt ttataatttc cctaatacct tagaaacaga aaaacaaaaa
     1501 tttgatttaa gaatactact tgaagaaaga ttggaatatt ttaaagtatt ttttgagcaa
     1561 aaaaaaatta cactaaagct tgatttaaat caagcaaata tttttgctcc taaaagtcaa
     1621 atttctaaat tgattgataa tcttataagc aatgctatta aatacaataa aaaaggtgga
     1681 gtaatttcta taattttgaa agccaatttt ttaagtattg cggatacagg ttgtggaatt
     1741 tcaaagtcaa atttaaatca tatttttgat agatatacaa gatttaatac cgatcaagga
     1801 ggatttggta tagggctttc tttggtaaaa aaagtttgtg atgataatga tattaagatt
     1861 atttgcgaat ctgtagaaaa tcaagggagt gtttttaaat taaattggta atcagcaagg
     1921 aaaatccttg ctgataagag gttagagcag atattacatc attccgccca tgccacccat
     1981 tcctcccata ccgctcatat ctggcatagt aggtttatct tctttaattt cactaattgt
     2041 tgcttctgtg gttaaaagca tactagctac agaaactgca ttgagtaaag ctactctttc
     2101 tactttaaca ggatcgataa ttccactttc aagcatatta acatattcac cttttgcagc
     2161 atcaaatcct gtgttttcat ctttagcatt ttctacgcta tttacaacca cacctgcatc
     2221 aaatcctgca ttttcagcaa tttgtcttaa aggtgctctt aaagctcttt caacgatagc
     2281 tgcgccaatt gcttcatcac cctgtagatc aagtttgatt ttagcttttg ctttgataag
     2341 cgctgcacca ccaccgatta ctataccttc ttcaactgct gctttagtag cgcttaaagc
     2401 atcgtcaacg cgatcttttt tctctttcat ttcagtttca gttgctgcac ctactttaat
     2461 aactgcaaca ccaccactta attttgcaag tctttcttgt aatttttctc tgtcataatc
     2521 tgaagttgtt tcagcaattt gtgctttgat ttgattgact ctcgcatcaa tatttgcttt
     2581 ttcgcctgca ccatttacta tggttgtatt gtctttatcg atgattacac tagaagcttg
     2641 tccaagatct tgtatagtcg cactttcaag agttcttcca agttcttcag aaatcacttc
     2701 tccacctgtt aaaatcgcta tatcttcaag catagctttt cttctatcgc caaaacctgg
     2761 agctttcact gctgaaatat taagaacacc gcgaagttta tttacaacca aagttgcaag
     2821 cgcttcacct tcaatatctt cagcgataat taaaagtggt ttgcctgttt tttgaatttg
     2881 ttctaaaacc ggtaataaat cttttaaatt tgtaattttt ttatcaaaaa gcaggatata
     2941 agggcttgaa agctctactg tcattttttc tgcattagtg ataaaataag ggcttaaata
     3001 acctctgtca aattgcatac cttcaactac atttaattca tcattgattg attttgcctc
     3061 ttcaacagtg ataacaccat ctttgcccac tttttccata gcatcagcga ttaaatttcc
     3121 gattttttca tcagagttgg ctgagattgt agcaacttgt gcaatttctt ttttatcttt
     3181 tacttcgcga gaaagttttt taagttctgc tactatagct tcgcaagctt tatccatacc
     3241 gcgttttacc tcgataggat ttgcacctgc tgtgatattt cttaaacctt ctttgaaaat
     3301 tgcatgagct aaaaccgttg cagtagttgt tccatcgcct gcttgatcag ctgttttact
     3361 cgctacttct cttacgagtg aagcacccat attttcaaga ctatctttaa gctctacttc
     3421 tttagcaaca cttacgccat ctttagtaat gcttggagca ccaaagcttt tttggattaa
     3481 aacattgcgt cctcttggcc ccatagttac ttttaccgcg tcattaagtt ttttaacgcc
     3541 ctcataaagt ttatttcttg cttcatctga aaaaataatt tcttttgcca ttttttatcc
     3601 ttattttata aattatttta aaattcctaa gatatcatct aaatttaaaa ctaaatattc
     3661 attattatca agtttaattt ctgttccacc gtatttagca aacacgattt tatcaccatt
     3721 tgcaatatca gtgatttctt tacttactgc tactacttca cccattaaag gcttttcttt
     3781 agcattatct ggtataatta tgcctgaggc tgttgtttta gtttcttcta cgcgtttgac
     3841 tagaacacgc tttcctaaag gttgaaaatt catttttgtc catccttaaa aatattgatt
     3901 ttagcactct tttatttaga gtgataatat catactataa aaaatgaatt ttgtcaatac
     3961 tttaaattaa aatatttata aaagtttagt tttatagact aaagttattt tataaaataa
     4021 actaaaggat aaaaatgaaa aagatttttt atggagttat agcttttgtt gttgtgcttt
     4081 tgattgctat ttataccata cttttcacaa gttttggtaa taatatagtg gcaaatatag
     4141 cgcaaaaaaa gatcaaagaa agtgcgggat tagatgtaaa tatcacgcat tttaatttac
     4201 gtttttcaag ccttgaattg caagcaaata tcgcaaatat ggcagatttt aatcttaagg
     4261 gagctttgag tccttttaag cttggatttg atcttgacta tcttatttct ttaaatcaaa
     4321 attatgctaa aaatttaggt ttaaatttaa atcaaaacct ttcttttggc ggtaagattc
     4381 aaggtaaagc aagtgatttt actttagatg gaaagggtta tttactaggt tcaaatgtac
     4441 ttttaaatgc aagaatgtat aattacagcc ctattgcttt aaatttagat gcgcaaaatc
     4501 ttaagataga agaaatactt catcttttat cttaccctag ttacgctaaa ggttttttaa
     4561 atgctcaagc aaaaatttca gcacagaatt taaaacctga tggaaatatc atcataaaac
     4621 ttgatacaag ttatataaac tatgaggcga taaaaaaaga tgtttcttta gacttgcctt
     4681 taaattctaa tcctaaagca gaaattttgg ccaatgttaa agaagataag atttatgctg
     4741 taagtaaaat ttacaatgat tatcttaact tacaaaccca aaaaactctt tatgatatta
     4801 gcaagaatgc tttaagtact gattttaatt taagtattcc ttctcttgta aagcttgaaa
     4861 aacttacaaa aactagacta aatggtagtt tggatgtgat aggtcaaaca agtgttgtaa
     4921 ataatgcctt atcaagttta aatgctcaag ttatcggact tggtggagag gtaaaggcaa
     4981 gtttgaaaaa taataaaatt tttgcagata ttaatgaagc aagtttggaa aaattattag
     5041 ctcttgcagg atacggagct ttggtttctg gaaatttaaa tgctaaactt ctaaatgcag
     5101 atttggattt ttctaatttt gatcttgaag caaaaataaa caatgcaaag attaacacca
     5161 atgagcttaa aaaaatagct aaaatagaac ttccaaatgc aatttttagt tttgatgcta
     5221 aagcaaatgc aaaaaatagt aatatttctt acaatgcttt acttgcttca aatttgctta
     5281 atatcaaaaa acttcaagga acttataatt taaaaaatag tgagttaaat acagatttaa
     5341 atgcttttat tgatgacttg tctcagttta gtgctatagc aggacaaaaa ttacaaggta
     5401 aggcagatct tactgcaaaa gctcatatta taggcactca agtacaaaat ttaaatgcaa
     5461 atgcaaattt ggcagatggt gtaatcaagg ctgattcaaa tggtaaaaaa cttgatttaa
     5521 acattgataa acttgattta tctaaacttt ttgttataac aggtatgcca aattatgcca
     5581 gtgggattgt taatgcaaaa gttaatttag ataatatcga ttttaacaat cttaatggta
     5641 aagcaaattt agaagctaag ggtattttaa atgctgcaac tttaagtaaa attttaaata
     5701 aaaattttcc aaacaataca agttatgatt taaataccaa aattaatttt aaaaacaata
     5761 tcgctcaatt tgattctgtt ttaaattcat ctttagctga tcttacaaaa ctacaaggaa
     5821 gttttgatat aagtaagatg cttttaaatt cggattttaa tttaaagata aatgattttt
     5881 caaaactagg ctttttgtta gatagaaaac ttaaaggtaa ggcagaattt aatggaaagg
     5941 taggttttga taagaattta aattttgttg taaatagtcc gaatttattt gaaggaaagc
     6001 ttcaaagcac atttaaagat aaccttttac ttgctgattt aaacggagtg gatttaagta
     6061 gtctagctca gggtttggat tttatggata tttatcaagg taaggcggac atgaaggcag
     6121 attacaatct tttaagcgaa gaaggcgagg ttaatttgga tatgaaagag ggtaaattaa
     6181 aaccaaatct tattaccaat gctttaaaaa ttttaacact aaaagatatt accaatgatg
     6241 tttatcgcac tgctaatgct aaagctttga ttaaaaaaga aaatatcaag cttaatctta
     6301 atatgcaagc agatcgttct tatattttag tacaatcagg agctttaaat tctaaaagcg
     6361 gggctttaaa tttgcctttt gatattaaac tcgatagagc taattttaaa ggaagtatta
     6421 caggaactac ggaaaatcct aaagtaaatt taaatgcagg aagcgtgtta aattctatta
     6481 aaaatgtagt gggtggcggt gtgagtgacg gtgctaaaag tactggcgat aaagttgata
     6541 aagcggtgaa taaattatta aataagattt tttaaggtaa aaaatgttta atggactcat
     6601 aagagaaatt gctaaagttc aatcttatca aaacaatact ttaagcttaa aagcaaaata
     6661 tcgcccaaat cttggcgata gcatagccgt aaatggagct tgtttaagtg taacaaaact
     6721 ttatgaagcg ggttttgaag tggagctttc tcgtgaaagt cgcactcata tggctataga
     6781 gaatttaaaa gataaagttc atatagaacc tgctttaaga tatggcgata gaatcgatgg
     6841 acatcttatg caaggacata ttgattttat cggcacactt gaaaagattc aaaaagatga
     6901 aaatggagta gattttcata tatctttacc caaagaagct atgaaattta tggcagaaaa
     6961 aggaagtata gctgttgatg gagtaagtct tactatcaat gaaattttaa aaaatggtat
     7021 taggcttact attattccta ttacctttaa agaaacgctt tttaaagact atcaagtagg
     7081 tagaaaaatc aatatagaaa gtgatttact tgctcgttat atttatgcac aattacaagg
     7141 taaaaacaaa ggattatcat gggaagaagt cgaaagaatt tcttatcttt attagaaaat
     7201 gataaagtcg gtattttttg tgcttttgat aaggattata atgtttttag agctaaaatt
     7261 cataatgaga atttattttc tcatttaggt tttaaagata ttgaaaaatg tgtttttatg
     7321 gatcaaattc attctcataa agttatcatt tatgatgaaa atttaaaaaa tctcagttgt
     7381 gatggactta taagcaagga aaaaaatatc gctctttgtg ttttaagtgc ggattgtctg
     7441 cctttgattt tatatcatga aagtggtatt atagcagctt tgcattcagg tagaaaagga
     7501 agctttgaaa atatcctaaa agaatgcgtt gatcaaatta ctatgcaaaa ttcacattta
     7561 gataagaata aatttcatct ttttatcctg cctggaattt gtgctaaaaa ttatgaaata
     7621 gatggagaaa ttttagaatt tgctaaaaaa gaatttaaag aatttgttca agatgataaa
     7681 cttgatttaa aagctttagt aaaatttcaa gcgcaaaatt taggcattga aaatattaaa
     7741 gattgtggaa tttgtagctt tgatgatgag agtttttttt cttatcgtcg tgataaaacg
     7801 actaagcgtt ttgtgagtgt ggtttattta aaggattaaa atgtatgaaa gaaaagattt
     7861 aagggtgtta aaaatcattc aaaaagctag agaatttggc gatggagatt tgttaaatga
     7921 agctttggtg aaacaattga ttgatgcaga tttttgtgaa attaatgaaa aagaaaaaga
     7981 agagcttgca actcttctac attctttaat caatgcaaaa gataaagcgt tattgagtaa
     8041 ttaaaattct atatagtttt caaaatcttc ttcttttgga ggattaggtt gattcgaggc
     8101 tagggcttct ttaacaacct gctcgtatcc agctatgata tgtttaaaat tctctttcgc
     8161 ttttccacta agttctgatt tggcgatttt tacaacagat gcaggattta tagctttatt
     8221 atttaaatat actccaaaat gcaaatgagg acctgtgctc atacctgttg aaccaacata
     8281 tgcaattact tgtccttgat ttaccttttg tccgttttta atttttgcaa aacgactaag
     8341 atgagcatat aaagtcatat aacctgagtc atgcttgatt tgaattacat ttccataacc
     8401 accttttgtg cctataaagg ttactactcc tttgccagca cttttcacag gagttccagt
     8461 aggtgcagca tagtctatac caagatgggc acgatagcgt tttaatatag gatgatatct
     8521 tgctgttgta aaaggagaag aaattctagt gtaattcaca ggttttgtaa gtaaaaaaga
     8581 ttctaattct ttgccatcac gatcatagaa tatatcatta taagaaaaga cttctctagc
     8641 gcttttattg atttctacca ttgccatttt tatatttata tcaccccaaa gtttacccat
     8701 gcgtcttttt tgttcataat atagggttac ttcatcacct ttttggatat tgcgaaaatt
     8761 tatacttcct cgaaaagcac gaaccatagc acgagctaaa gtactgctac cactttcttc
     8821 atagacatct tgataagcag agcttttaat ggttaaatgt aaaattctat cttctttttg
     8881 ataagataca ggagtaaaag caagagtgta ttgtccatct ttatctttat agatatgaat
     8941 ttgtaaatca tcactaattg gaattaaaac ttgttctatg ttgttgtttt catcttttaa
     9001 aacttgatat tttattttat aggctatatc agaagcaagt tcttgatctt ctctatcaag
     9061 tccataataa agcgacatag gtatggaatt tctttgtagg aatttaagca aggtatctcc
     9121 attatcccaa gttagctctt caacacttaa agctgcaaaa ctttgaacaa caaaaataaa
     9181 taaaagcaat aattttttca tgagataacc ttaattttta aaagaatttt gaaatttgaa
     9241 agctatattt tactttattt ttcttacaat tgcttaacaa aaaaggatta taattctata
     9301 aatttttatt taaggagcaa atttgtttaa aactatagtg tgttttttag ctttaaacct
     9361 tagcctcttt gcggttggat ttgatttaaa acctataaaa agtgaacttg taaaagttga
     9421 tgatatttat ggttatatta aagatagtga tgatataaaa ctttattcaa gtggcgtagt
     9481 agtgcaacat tttagcaatt cgcaaagtat catcgctaga gcaagtgtta tagataaaaa
     9541 aaatggtttg gcaaaattag aatttagtgt tttttcagct cttaagcaag atgctttgcc
     9601 tttaccaaat gttttaccta aagtaggtga tgaggttgtt ttaaattttc tttatgatag
     9661 aggattggta attgctcctg atgaacaaac ttataatgaa cttgttagag aatttccgca
     9721 gatatatttt acccatattg atatttttgg agcacaatta attagaacgg ctactctttc
     9781 tcctaagcgt tcagatttta ggcaattttg tgatgataat gcggtcggca ttttggttgt
     9841 ggctttggaa aatcatgcag aagttgtgga ttgtcaagat tttaataagc tttatgaagt
     9901 gcctataagc aagccaacta gcgttcaggt tcctttttat tctcgtatag gtggatataa
     9961 aagtaatttt tttgatttta actctcaaga aataggaaat tattataggt attatgatgc
    10021 tttgattaat cttcctaagg tgcaataaac atgaaaaaag aatttgaaca atattttaaa
    10081 cgatttttag gagaagaaaa cgcttatttt gatgaaattc acaaaagagc ttatagctat
    10141 gatgcgacaa aaaaacatta tttacccgat ggggttcttt ttccaagaaa tgaagaagat
    10201 attgctcgaa ttttaaaatt ttgtaatgaa aataatatca tagtcatacc gcgaggctca
    10261 ggatctggtt ttacaggagg agctttagct gttaatggcg gggtggtgct tgcttttgaa
    10321 aagcatatga ataaaatttt agaaattgat cttgaaaatt tagtggctgt tgtgcaacct
    10381 ggggttatta atatacattt acaaaaagaa gtagccaaat acggactttt ttatccacct
    10441 gaccctgcta gcatggagta ttcaagctta gggggtaatg taagcgaaaa tgctggggga
    10501 atgagagctg caaaatatgg cattacaaaa gattatgtga tggctttaag ggctgttttg
    10561 cctagcggag aaatcattcg tgcagggaaa cgcactatta aagatgtagc aggttataat
    10621 ttggcaggaa ttttaatcgc tagtgaaggt tctttggcag ttttaagtga gcttacttta
    10681 aaattaatac ctttgcctaa atttaaaaaa actgcttttg ctatttttcc aagtgtaaaa
    10741 agtgctatga atgcggttta caaaagtctt gctagcggtg taagtcctgt atctatggaa
    10801 tttttagaca atcttagcat tagagcggtt gagagcaaat ttaataaagg tttgcctata
    10861 gaagctggag ctattttgat tgctgatgtg gatggtaatg ttaaagaggc tattgatgag
    10921 gatttaagaa atttagaaca ttatttttta gaagctggcg ctagcgaatt taaaatagca
    10981 aaagatgaac aagaaaccgc agatatttgg tttgctagaa gaaattgttc tcaaagcatt
    11041 gccatgtatg gaactttaaa acttaatgaa gatattacag ttccgcgttc taaactacct
    11101 actttgcttg aaggtataga tgagatttct aaaaaatatg gttttaaaat tccttgcttt
    11161 ggacatacag gggatggaaa tgtgcatact aatgttatgg ttcctgataa aaatgataaa
    11221 gagcaggtga aaaaaggcta tgaagctgtg gaagagattt ttaaattaac agtgaaactt
    11281 ggaggaactt taagcggaga gcatggtatc ggactctcta aggcaccttt tatgaattta
    11341 gctttttctg aagccgaaat gaatttaatg agaaatatta aaaaagcttt tgatccaaat
    11401 aatatactaa atccttttaa aatgggactt tagaaggtga aaaatttttt tactatttta
    11461 ctaaatttgc gtgataagga aattttaaat tatgcagcag cgcttagttt ttatactgta
    11521 ttatctttaa tacctatttt atttgtatgt ttttctgttt ttacgcaaat ttccagtttt
    11581 aaagcttatt atgaaaaagc aaagcaagta atttttgctt ttttaatacc aacgcaacaa
    11641 gatgttgttg ctacctacat cgatactttt ttaaaaaata gtgtaaattt gggtattgta
    11701 ggtcttattg ctatggcatt tacttcttta gctttttttt caggctatga ttttgtaatc
    11761 aatcgcatta ctaaaaatga acctaaagga ctttggcaaa gtattagttc ttattggact
    11821 cttttaactc ttgttccttt ggggcttggg cttagttttt atatttcagg ttttatccaa
    11881 caaactttag atgattataa aatagggttt aatttttttg aaattttacc ctttgtaatt
    11941 atttggggtt tattttttat atcttattca agttctgttc ataagggaac tcttaaaagt
    12001 ttagctttag tatcttttgg agcgggtact atttggtata taggaaaaaa tttatttgta
    12061 tattacgtgg tatataataa aacatacgct agcgtttatg gatctttttc tactatttta
    12121 ttctttttta tttggattta tatttcttgg attatttatc tttttgggct taaactctat
    12181 tattttctaa atcacaatca taatgaaggg aataaaattc gcaaaaatac aaagaaaagc
    12241 tagatattta aatcgcacag agattaaaga agcaataaga taacttataa aaatccaaaa
//
LOCUS       DAPIWQ010000041        11566 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.041, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000041 DAPIWQ010000000
VERSION     DAPIWQ010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11566
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.041"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..125)
                     /locus_tag="RJ267_000790"
     CDS             complement(<1..125)
                     /locus_tag="RJ267_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-to-5' oligoribonuclease B"
                     /protein_id="HDV7388666.1"
                     /translation="MKIYHLSHTDLDGYACQFIVNFYFKNVRFYNSNYGKEINEN"
     gene            complement(134..2308)
                     /gene="flhA"
                     /locus_tag="RJ267_000791"
     CDS             complement(134..2308)
                     /gene="flhA"
                     /locus_tag="RJ267_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HDV7388667.1"
                     /translation="MAKNKIVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTK
                     QVKEGKIDITTVKKSKPSAAVASQSGAGGTTAAPAKKSEEEILKEEEHKINDILKVEI
                     LELELGYGLIKLAENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKG
                     VSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVI
                     DPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGALGVAPVSLIQKIL
                     KDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLDI
                     FILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCVE
                     PQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGIIRIEL"
     gene            complement(2295..2705)
                     /locus_tag="RJ267_000792"
     CDS             complement(2295..2705)
                     /locus_tag="RJ267_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HDV7388668.1"
                     /translation="MLFTKASEYALLSLIYISQKETPQDVDSLALELDIPKSFLAKIL
                     QTLAKDGLLKSFKGAKGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPNNKEE
                     NCTLMPMLVNLQNKVDEFLDSITLEDIMKNNGKK"
     gene            2880..3152
                     /gene="rpsO"
                     /locus_tag="RJ267_000793"
     CDS             2880..3152
                     /gene="rpsO"
                     /locus_tag="RJ267_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HDV7388669.1"
                     /translation="MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLITELNLRDK"
     gene            complement(3238..6078)
                     /locus_tag="RJ267_000794"
     CDS             complement(3238..6078)
                     /locus_tag="RJ267_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HDV7388670.1"
                     /translation="MLAPGMGEWVYKANLFLFGEFAYYYPFFLFILNYVYYKRNYKLA
                     NFTRRELFGIGFAFFSSLLLFAVFYPNSGYILELAYAIFSTILGHTGSGIFALLLLLF
                     SLVLLFPKFAKEILKIELDFTYLLKVEQAFKSLLMRVFGGENEKEDVGKSEPIVPKLN
                     ILQDSIYGNLQINKKGETNNLEQIIKDSNINASKNSITTAKENFEKLKNQILDETIEI
                     DKQSLKESRSFVHEHSQQVRNFAQKASKMSISLDEDFNFISEEEVDMIPERFLKPKKL
                     EDIKQIDTNKNLDEPSYKRKNIEIPVSNQEVKPKIFTKELELRENLIKKEKLEQEYKA
                     YQNEILENKVKQEIKKLEEYDAINSSDIIEGNKYSFNSPKTIKTETEESDKINENKNL
                     DKADNIFEFAPIVEELNHPYIEPTPIKNINEIVIEEKNTLDFIQNTETKIDNEKTNDQ
                     EIKLQKAVLAKEIAINQALLREIEQGEIEKPKDFTLPPLDFLANPKEHKQEINESEID
                     KKIYNLLEKLRRFKIGGDVISTYVGPVVTTFEFRPSADVKVSRILNLQDDLTMALMAK
                     SIRIQAPIPGKDVVGIEVPNDEIQTIYLREILQSEVFKNAKSPLTIALGKDIVGNAFV
                     TDLKKLPHLLIAGTTGSGKSVGINSMLLSLLYRNSPKTLRLMMIDPKMLEFSIYNDIP
                     HLLTPVITDPKKAVNALSNMVAEMERRYRLMADAKTKNIENYNEKMKELGGEELPFIV
                     VIIDELADLMMTAGKDVEFYIGRLAQMARASGIHLIVATQRPSVDVVTGLIKANLPSR
                     ISYKVGQKIDSKVILDAMGAESLLGRGDCLFTPPGTSSIVRLHAPFASEFEIEKIVDF
                     LKDQQSVEYDESFLKDQQSVGVTTNESFDGEADELYEEAKRVILEDGKTSISYLQRRL
                     KIGYNRSANIIEQLTQNGILSEPDAKGQREIL"
     gene            complement(6188..8440)
                     /gene="flgL"
                     /locus_tag="RJ267_000795"
     CDS             complement(6188..8440)
                     /gene="flgL"
                     /locus_tag="RJ267_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HDV7388671.1"
                     /translation="MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDAS
                     TYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLNKDPDKTKYLTGDSKW
                     QQLIGQSYVKDNSLDADKDFEYDDSKLDFPPTTLYVQGTRPDGTSFKSAVLVKPEDTL
                     EDVMENIGALYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADDKTE
                     LNNIIQAAQDEGITMEDVTNRVMTAALGNPNNGDITNLNNPVTIQINGQNFEIDLKQT
                     DFIKSKMTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMA
                     GDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNS
                     GVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVD
                     VSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSL
                     TIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNT
                     TMGAYHNTIEGVNTRTSFLSVNIQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTT
                     ISQLSLLNYM"
     gene            8621..8707
                     /locus_tag="RJ267_000796"
     tRNA            8621..8707
                     /locus_tag="RJ267_000796"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8655..8657,aa:Leu,seq:caa)
     gene            8718..8792
                     /locus_tag="RJ267_000797"
     tRNA            8718..8792
                     /locus_tag="RJ267_000797"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8750..8752,aa:Gly,seq:gcc)
     gene            complement(8823..10754)
                     /locus_tag="RJ267_000798"
     CDS             complement(8823..10754)
                     /locus_tag="RJ267_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HDV7388672.1"
                     /translation="MALIDLIEASKKFGDKIVLNEVNFSANEGEKIAIIGKNGEGKST
                     FLKTLLGALPLDSGRIIRQNGKSIAMLSQTVDFNANLSVKEAIKQELVEIYNTLEEYE
                     ILHKKLEEDPSNKDYLQKIDTLMTLIDSKDAWSIESKIIRVLKEFSLLEYENRIISTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEELLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVEQGKLSIFKGGYANYLEKKTQILQSLAKSHETLLKQLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPGAIKRLKLEISRAALNFNGEKTINRKKMLFEL
                     KNISKNINNKNLFKDFSTRILQGERIAIVGRNGCGKSTLLKILLGQIKQDSGEIKRGE
                     LKIGYFDQARSLVNSDKSLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     ALLSGGEKNRVALALLFAKEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYAFEGNGYINILHTLYTEYLENEKEIEELDNFALELQTQEQNNNQKE
                     KSSKKLSYKENEILKNHPEKIDFLEQKIAKLNQDLSDPNVYQEIGINKLYQELEVMQK
                     ELEILENEYFLVLEKSENL"
     gene            complement(10758..>11566)
                     /locus_tag="RJ267_000799"
     CDS             complement(10758..>11566)
                     /locus_tag="RJ267_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDV7388673.1"
                     /translation="KNFNKILDFLDSIGDHKVVILEKGIFKEFNLLNEKLLKTKDKIL
                     KNTQKNKKQSDKITLKNTQLASVISAISHELKNPLSVIDLSLEMLKDEKLEDKKLKKE
                     LLEKISRQSVKLNALTHKLNFVFNLNSEALQMQEFDLFSLCEKITKNPGFERVALQGK
                     STKVKADEFLIEQVIINLLSNALKYSQKKVILTARDQKIIVQDFGKGIEEDKIKLITK
                     KFYKIDVKSDNSFGLGLFLVKKILNIHKSYLEISSTLGYGSSFSFKLSQG"
BASE COUNT         3643 a         2013 c         1559 g         4351 t
ORIGIN      
        1 aaattttcat taatttcttt gccataatta gaattataaa atctcacatt tttaaaataa
       61 aaatttacta taaattgaca agcatagcca tcaagatctg tatgtgaaag atgataaatt
      121 ttcattatat tccttaaagt tctatcctaa taataccctc ggtattaaaa tttgtatttt
      181 ctgcaatttc tgcaaaactt aacactacta tattaatgct aaaattataa caaatatcag
      241 caatgaattt tctaagctgc ggttcaacgc aaagtataaa aggcttgata cgaccatttg
      301 ctactgcggc aacttcagcc cttagagtat ctactaaagt acctgtttga gctacactta
      361 aaggcaagtg ataacttcca tctctaaatt gtacattttc cattaaaacc gcagaactag
      421 cagagtctaa gataaaaata tccaaatttc ctttatcatc taaatacata tttgtaatca
      481 tcctagctaa ggacgccctt acatgttcaa taatcatatc aaaactcttg cttacttctg
      541 ctatatcgct tacagattct aaaatagtaa gcatatcttt aattggtatg tgatgcttaa
      601 gcaagtcttt gagaattttt tgaataagac ttacaggtgc aacacctaaa gcaccttcta
      661 cgatgattgg ataatcattt ttaaccttat caagaagatt ttgtacctct tggcgtgtga
      721 gaagttcgct tgcgtgcgct ttgataagtt cgctcatatg tgttgaaata acacttgcag
      781 gatctattac tatatagcca tttaatgttg cttcatcttt taaattcgca tcaatccaaa
      841 gtgcatcaga gttaaaagcg ggttcttttg tagcaatccc ttctatctct tctgtgataa
      901 aaccactatc catggctaaa tatttatccg gataaatttc agcacttgct atagacacac
      961 ccttgagttt aaaactatac tcatttggtt taagtcttaa attatctctt attcttattt
     1021 ttggcattaa aaatcctaaa ctttcagcaa tacttcttct cattgagcga attctttctg
     1081 taagttcgtt ttcagcaagc ttaataagtc cgtatccaag ttcaagttct aaaatttcaa
     1141 ctttgagtat atcgttaatc ttgtgctctt cttctttgag aatttcttct tcgcttttct
     1201 tagcaggcgc tgccgttgtc ccacctgctc cactttgaga tgcaactgcg gcacttggtt
     1261 tgcttttttt aactgtagtt atatcaattt taccttcctt aacctgcttg gtaagatagc
     1321 caaggcttaa aaatactaaa gccataaagc ccaaggataa agttggcaaa ccaggcacta
     1381 acgcaaagat aaaaagtaca aaacctacta ttaaaagcgt gcgatattcg cttaaaagtt
     1441 gagttaaagt tccttctgca aaattttcct catctttgct tgcacgagtg ataattatag
     1501 cggttgcagt agaagtaata agccctggaa tttgagatac aagtccatca cctatggtta
     1561 aaatagtata agtagatgca gcatcgctta aagccatatc gtgctgaaaa gatcctatta
     1621 aaaaaccacc tatgatattt ataatagtta tgataattcc tgcaacagca tctcctttga
     1681 taaatttaga agaaccatcc attgcaccat agaagtttgc ctcagcaata acttcttgac
     1741 gtcttgctct agcggtttgt tcatcaataa gtcctgcatt taaatccgca tcaatagcca
     1801 tttgtttacc cggcatcgca tcaagtgtaa atcttgcttg tacttcagaa acccttgtac
     1861 taccttttgt tacaaccatg aaattaatca atactaaaat acaaaataca atcacgccaa
     1921 tgaccatatt tccaccaaca acaaattctc caaatgctgc tataatctca ctcacagctt
     1981 cagggccgtt ttgcccttcg cttaaaatca tccttgtggt agctatattt aatgaaagcc
     2041 taaataaagt gataatcaag attaaagttg gaaaagttgt taaatctgtc ggtttgggta
     2101 tataaataga aattaaaata attaataccg ataaagctat acttaaagcc aagaaaaagt
     2161 ccaaaatagg acttggtaaa ggaactataa taatagctaa aatacaaact aaaaaaccaa
     2221 caatagtcaa gcttttagct tttaaaacag gagcgattaa aggccccaag aaaggaaaaa
     2281 ctaaatcgac tattttattt tttgccatta tttttcataa tatcttctaa agtaatagaa
     2341 tctaaaaatt catctacttt attttgtaaa tttactaaca taggcattaa ggtgcaattt
     2401 tcttctttat tatttggaca agtgccacca ctgcattcaa atacactgat atcctttttt
     2461 tcagcactat taacaatttc ttttatagta tattgacttg gttctttgat taaaacaaaa
     2521 ccaccttttg cccctttaaa ggattttaac aagccatctt tagctaaagt ttgtaaaatt
     2581 ttagctaaaa aacttttagg aatatcaagc tctaaagcta aagaatctac atcttgaggt
     2641 gtttcttttt gagaaatata aattaaagaa agtaaagcgt attcgctagc tttggtaaat
     2701 agcacagatt ctccttgtta taactacaga aatagctgta attataataa ataattctta
     2761 gaaaaagact taaattttga caaaaccttc taaaaaagat aaattcagtt tattttttgc
     2821 tttttaagat aaaattacag ttctttaatt ttattatttt accaatcagg aggtctatca
     2881 tggctttgga ttcggccaaa aaagcagaaa tagttgcgaa attcgctaaa aaaccaggtg
     2941 atactggttc aacagaagtt caagtagctc ttttaactgc aagaattgca gaacttacag
     3001 aacatttaaa aatctacaaa aaagactttt catcaagatt aggacttcta aaacttgtag
     3061 gtcaaagaaa aagactttta tcttatctta aaagaaaaga ttataattct tatagtaagt
     3121 taattactga attaaatctt agagataaat aatttttaag ccctttttac ggggcttttg
     3181 ccttttaaat ttcttctttt gtaatcagtt ttatatatca aaaacacaag aaaaatctta
     3241 caagatttcc ctttgtcctt tggcatcagg ttcgcttaaa atcccgtttt gcgtaagttg
     3301 ttcaataata tttgcagagc ggttatagcc gatttttaaa cggcgttgta aataagaaat
     3361 gcttgttttt ccatcttcta agattactct tttagcttct tcataaagct catctgcttc
     3421 cccatcaaag ctttcatttg ttgtaacacc tacgctttgc tgatccttta aaaagctttc
     3481 atcatattct acgctttgtt gatcctttag aaaatccacg attttttcta tttcaaattc
     3541 gcttgcaaaa ggcgcatgca aacgcactat agagcttgtt ccaggaggag taaataaaca
     3601 atcccctctt ccaagtaaac tttcagcacc catagcatct aaaataactt tagagtcaat
     3661 tttttgccct actttataag aaattctact tggtaaattc gctttaatta gtcctgttac
     3721 aacatcaaca gaaggtcgtt gtgtagctac aatcaagtgg attccacttg ctcttgccat
     3781 ttgcgcaagt cttcctatat aaaattctac atctttaccc gcagtcatca tcaaatcagc
     3841 aagttcatcg ataattacta caataaaagg aagttcttct ccgcctaatt ctttcatttt
     3901 ttcattgtaa ttttctatat ttttggtttt tgcatcagcc attaagcgat agcgtctttc
     3961 catttcagct accatatttg aaagcgcatt gactgctttt tttggatctg tgataacagg
     4021 agttaaaaga tgaggaatgt cattataaat gctaaattca agcatcttag gatctatcat
     4081 catcaaacgc aaggtttttg gagagttgcg atataaaaga cttaaaagca tagaatttat
     4141 ccccacactt ttaccactac ctgtcgttcc tgcgatgagt aaatgcggaa gttttttaag
     4201 atcggttaca aaagcattgc ctactatatc tttacctaaa gctatggtta aaggactttt
     4261 agcgttttta aaaacttcac tttgtaaaat ttctcttaaa taaatggttt gaatttcatc
     4321 atttggaact tctataccta caacatcttt tcctggtatt ggagcttgaa tacggattga
     4381 ttttgccatt aaagccatag ttaaatcatc ttgtaaattt aaaatacgac ttactttcac
     4441 atctgcacta ggacgaaatt caaaagtagt taccacagga ccaacataag tgcttataac
     4501 atcgccgcct attttaaaac gacgcaattt ttcaagaaga ttataaattt ttttatctat
     4561 ttcactttca ttgatttctt gtttgtgttc ttttggatta gctaaaaaat ctaatggcgg
     4621 caaggtgaaa tcttttggtt tttctatttc gccctgctct atttcacgca ataaagcttg
     4681 gttaatagca atttctttgg ctaaaactgc tttttgaagt ttaatttctt gatcatttgt
     4741 tttttcatta tcgattttag tttctgtatt ttggataaaa tcgagtgtat ttttttcttc
     4801 tataactatt tcatttatat tttttatagg agtaggttct atataaggat gatttaactc
     4861 ttctacaatg ggagcaaatt caaagatatt gtctgcttta tctagatttt tattttcatt
     4921 tattttgtct gattcttctg tttctgtttt aattgttttt gggctattaa aactatattt
     4981 attcccttct ataatatcgc ttgaatttat cgcatcatat tcttctaatt ttttaatttc
     5041 ttgttttact ttattttcta aaatttcatt ttgataggct ttgtattctt gttctagttt
     5101 ttcttttttt atcaaattct ctctaagttc aagctctttt gtaaaaattt ttggtttaac
     5161 ttcttgatta gaaactggaa tttcaatatt tttacgttta taacttggct catctaaatt
     5221 tttatttgta tctatttgct ttatatcttc aagtttttta ggttttaaaa aacgttcagg
     5281 aatcatatct acctcttctt ctgaaataaa attaaaatct tcatcaagac taatgctcat
     5341 tttactagcc ttttgtgcga aatttcgcac ttgttgagaa tgctcatgaa caaaacttct
     5401 tgattctttt aaactttgtt tatcaatctc tatggtttca tctaaaattt gattttttag
     5461 tttttcaaaa ttttccttgg ccgtggtaat tgaattttta cttgcattga tattgctatc
     5521 tttaattatc tgttctaagt tattggtttc cccttttttg tttatttgta aatttccata
     5581 aatactatct tgcaaaatat ttaattttgg aactataggt tctgatttac ctacatcttc
     5641 tttctcgttt tctccaccaa atacacgcat aagtaaagat ttaaaagctt gctctacttt
     5701 taataaataa gtaaaatcta attctatttt taaaatttct tttgcaaatt ttggaaacaa
     5761 taaaaccaaa gaaaatagta gaagtaaaag agcgaaaatt ccgctcccag tatgccccaa
     5821 aatagtagaa aaaatcgcat aagcaagctc tagtatatag cctgaattag gataaaaaac
     5881 tgcaaataaa agcaaactcg agaaaaaggc aaatcctata ccaaaaagct ctcttcttgt
     5941 aaaattagct aatttgtaat ttcttttata ataaacataa tttaaaataa ataagaaaaa
     6001 aggataataa tacgcaaatt ctccaaataa aaataaatta gccttgtaaa cccattctcc
     6061 catgccaggt gctagcatac aaagacaaag ataaaaaata acaagcgtgg agctggtaaa
     6121 aatggcttct tttttaatat tctttccttg aaaataaaat caaagccaaa ttataccata
     6181 aaaaatttta catataattt aataagctaa gttgagaaat tgttgtacta gctttaagag
     6241 aagcttgata tgcaagttga acttgcatta aattcatcat tgcctcacca taatctacat
     6301 caatcacatt tgattttata ctttggatat taacgcttaa aaatgatgtg cgtgtattaa
     6361 caccttcgat agtattatga tatgctccca tagttgtatt aagcttgcta acatgatctg
     6421 ctaaatgatc aagtctttct aaagctcctt gcatacctgt atttctaggg ttttcacttt
     6481 cggagtctgc tctcatattg ccttttaaaa cagcatcaat cattgaatct aaatctttaa
     6541 taatatccac atttggctca tctatagtta aagaattatt cgcgctaaaa ctaaaatttg
     6601 gaccattttg tacagtagaa gttgtggtaa aaggaggtgc tggaaattgg ccactttgag
     6661 aatcactaag agaaatttct atattggttc ctgatgaaag tttatcagta acactaatac
     6721 gacctttata atccatactt acatcaacag tagcttgtga atctttcatg agttgttgta
     6781 tttgggtata atctgcatta ttaatttgac cattattggc ttgtatggtt gttgtaggaa
     6841 ttttatctgc agcaaacata cctataatat cattaatttg accataagta atatcatttg
     6901 atcctgtaac aaccccacta tttccagttg caggattagt atgcataata ggaaagctta
     6961 tggtttgacc tggattatta ggatcaggat agcttacagt tgaagtttgt aaatttatag
     7021 taacatcgta agaatttcca cctttggaat tgacttttaa atttaaagta gtaccattta
     7081 ggctatctcc tgccattacc tcgctaagtt tggttgaatc agtggcataa gcattgcttc
     7141 ctttgataac ttgagaaaca ttaccataaa cagtattgcc atttttttca aaatacacat
     7201 tatcgtaatc agctccatta gcagcatttc catctgtatc tgtcatttta cttttgataa
     7261 aatcagtttg ttttaaatca atttcaaagt tttgtccgtt aatttgaatg gttacaggat
     7321 tatttaaatt tgtaatatct ccattattgg gatttcctag tgcagcagtc ataaccctgt
     7381 ttgtaacatc ttccattgta atgccttcat cctgtgctgc ttggataata ttatttaatt
     7441 cagttttatc atcagcttgt ggtgtgaaag ctacagcatg aaaatcgagt ttattattac
     7501 cttgctttag atctgtaatt tgaatttgac cactatcatt catacttact tctactactt
     7561 tattatttgg agtattacca taaagagctc caatattttc cattacatct tctaaagtat
     7621 cttcgggttt gacgagtaca gcacttttaa aacttgttcc atcgggtctt gtaccttgaa
     7681 cataaagagt tgttggagga aaatctagtt tgctatcatc atactcaaag tctttgtcag
     7741 catctaagct attatctttt acataacttt gtccgataag ttgttgccat ttagaatctc
     7801 ctgtgagata tttagtttta tcagggtctt tatttaaatc ccaacgatta tctgtaaaac
     7861 taacattagt gcttatttgt tttttatagt ctccatctgc tttaaaaaat aaatcccaac
     7921 ctggtatatt gtatgggctt tcagttccag ctccagttac tacattaata ttatttttat
     7981 ctccataata atttccatta gaatcaaaag gtttgtttgc aacttgagaa cccgcaaaaa
     8041 gatactgacc attaacactg gtatttgcaa gctgaactat gctttctttt atacgttcta
     8101 gttcttttgc tatagcttct cttgaggttt gagaattgct atcgcttgca gcttgggtta
     8161 ctttaacttt aaaatcttca agaagtttaa ccatatcttg taaagctttc atactatttt
     8221 gagtcatttc ttgagctcta cttgttgatt cttttacttg ttctaacgtt ttaatttcat
     8281 attcaagacg cgtattatct atataagtgc ttgcatcttc atatgaattt tgtattttca
     8341 aacctgaagc aagttgttga gatatctgat ataaagcact ttgaccgccc atagaattat
     8401 tcacactatt tgtgaagtta agtttatttg taattctcat ttttttcctc taaagtatta
     8461 aagttaaaat cttttcaaac attgctaata aacaaaagca ataactgttc caaaaattta
     8521 aattatataa ttttatattg tctttttgaa aatacttttt atttttaaag tattttttag
     8581 cctaaaaaag tataatttta gctttaaatc ttaaaaatga gcccgagtgg tgaaactggt
     8641 agacgcgcca gactcaaaat ctggtaaggg caaccttgtg tcggttcgag tccgacctcg
     8701 ggcaccactt attttttgcg ggaatagctc aggggtagag cacaaccttg ccaaggttgg
     8761 ggtcgcgagt tcgaatctcg tttcccgctc catagagtaa aaaaaatata aaatctcttt
     8821 aattataaat tctcgctttt ctctaatact aaaaaatact cattttctag aatttcaagt
     8881 tctttttgca ttacttcaag ctcttgataa agcttgttaa tacctatttc ttgatataca
     8941 tttggatcgg ataaatcttg atttaattta gctatctttt gctctaaaaa atctattttt
     9001 tcaggatggt tttttaatat ctcattttct ttgtagctca attttttgga gcttttttct
     9061 ttttggttat tattttgctc ttgggtttga agctctaaag caaaattatc caattcttca
     9121 atttcttttt cattttcaag atattcagta taaagagtgt gtaaaatatt tatatatcca
     9181 tttccctcaa aagcataaag ttttgttgcg attttatcaa caaaatatct atcgtgtgat
     9241 actagcaaaa tagccccttc aaaactaagt aagtattctt ctaatatatt aatcgtagct
     9301 atatcaagat cattagttgg ctcatctaaa atcaaaacat catattcttt agcaaaaagc
     9361 aaggctaaag caacgcgatt tttctctccg ccgcttaaaa gagccacgct tttatctaaa
     9421 aattccttag gaaatagaaa atttttcaaa tatccataaa catgcatatt tttaccacga
     9481 acttcaaccc tatctccacc attgggacaa aaaatttcaa gcaagctttt atcagaattt
     9541 accaagcttc tagcctgatc aaaatatcct atcttaagct ctccgcgttt tatttcaccg
     9601 ctatcttgtt ttatttgccc tagaagaatt tttaacaatg ttgattttcc acaaccattt
     9661 cttcctacga tagctatgcg ttcaccttgt aaaatacgcg ttgaaaaatc tttaaaaaga
     9721 tttttattgt ttatattttt gcttatattt ttaagctcaa aaagcatttt tttacgattg
     9781 atcgtttttt ctccattaaa atttaaagcc gctcttgaaa tttcaagttt taagcgtttg
     9841 attgccccag gatttttttt cgcttcttca cgcattttaa aaatgcgttc ttttcgtcct
     9901 tcatttcttt taagtcttgc tttaacccct cttctaagcc attcttcttc gctttttaat
     9961 tgctttaaaa gagtttcatg gctcttagca aggctttgca aaatttgtgt ttttttctct
    10021 aaatagtttg catatccgcc tttaaaaata ctaagcttac cctgctctac ttctacacac
    10081 ttgtgtgcta tagcgtcaat aaaatatcta tcatgggaaa taaaaatcac acacatcttt
    10141 gaatttttta gcaattcttc caaaaagctt gtcatatata catctaaatg attagttggt
    10201 tcatcaagca ataaaatatc aggatttttt agtaaaagta tgcaaagccc aacgcggcgt
    10261 atttctccac cacttaaagt agatataatg cgattttcat actcaagtaa actaaattct
    10321 tttaaaacgc gtattatttt agattctata ctccaagcat ctttactatc aatcaaagtc
    10381 ataagcgtat ctattttttg aagataatct ttattactag gatcttcttc taatttttta
    10441 tgcagtattt catattcttc taaggtattg taaatttcta caagctcttg cttgatggct
    10501 tcttttacgc ttaaatttgc attaaaatca acggtttgtg aaagcatggc tatgcttttt
    10561 ccattttgtc ttattattct accgctatct aaaggaagtg cgcctaaaag cgtttttaaa
    10621 aaagtagatt ttccttctcc atttttgcct ataatagcaa tcttttctcc ctcgtttgcg
    10681 ctaaaattta cttcatttaa aactattttg tctccaaatt tttttgaagc ttcaattaaa
    10741 tctataagag ccatttttta tccttgactg agtttaaagc taaaactaga accataacct
    10801 aaagtgctag aaatttcaag ataactttta tgtatattta aaattttctt tactaaaaaa
    10861 agtcccaaac caaaagaatt atcacttttt acatcaattt tataaaattt ttttgtaatc
    10921 aattttattt tatcttcttc tatgcctttt ccaaaatctt gcactattat cttttgatct
    10981 cttgccgtta aaatgacttt tttttgacta tattttaaag cattagaaag caaatttata
    11041 atcacttgct cgattaaaaa ttcatcagcc ttaactttcg tgcttttacc ttgcaatgca
    11101 actctttcaa agcctgggtt tttagtgatt ttttcacata gagaaaaaag atcgaattct
    11161 tgcatctgca aggcttcact attaagatta aaaacaaaat taagcttatg ggttaaagca
    11221 ttaagtttaa cgctttgacg tgaaattttt tctagtaatt ccttttttaa ttttttatct
    11281 tccaatttct catcttttag catctctaag ctaagatcaa tcacgcttaa tggattttta
    11341 agctcatgag aaatagcaga aatcacgcta gcaagctgag tattttttaa agtgatttta
    11401 tcgctttgtt ttttattttt ttgggtattc tttagaattt tatccttagt ttttaaaagt
    11461 ttctcattta gtaaattaaa ttctttaaag attccttttt ctaatataac aactttatga
    11521 tcccctatag aatccaaaaa atccaaaatt ttattaaaat ttttct
//
LOCUS       DAPIWQ010000042        11430 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.042, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000042 DAPIWQ010000000
VERSION     DAPIWQ010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11430)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11430)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11430
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.042"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            33..120
                     /locus_tag="RJ267_000800"
     tRNA            33..120
                     /locus_tag="RJ267_000800"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:67..69,aa:Ser,seq:gga)
     gene            167..242
                     /locus_tag="RJ267_000801"
     tRNA            167..242
                     /locus_tag="RJ267_000801"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:200..202,aa:Ala,seq:ggc)
     gene            246..321
                     /locus_tag="RJ267_000802"
     tRNA            246..321
                     /locus_tag="RJ267_000802"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:279..281,aa:Val,seq:gac)
     gene            349..879
                     /locus_tag="RJ267_000803"
     CDS             349..879
                     /locus_tag="RJ267_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7388674.1"
                     /translation="MQNTIIQKAVNKDLNSILEITKDALNAMKTMNFHQWDENYPNEI
                     VFQEDIQAQELYVFKENDEILGFICINEKFKPEFYKQVIFNKNYDDKAFYLHRLAVKQ
                     NAKGKGVAQKLLNFCENFALENHKASLRADTHSKNFPMNSLFKKLDFNFCGNFDIPNY
                     QDPFLAYEKILNQKAF"
     gene            complement(859..1461)
                     /gene="leuD"
                     /locus_tag="RJ267_000804"
     CDS             complement(859..1461)
                     /gene="leuD"
                     /locus_tag="RJ267_000804"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HDV7388675.1"
                     /translation="MQKFIIHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVLEIVDELKKSQDKNIEISLLEKRVFFKDKIFS
                     FDLDDFHRICLLEGLDNIALTLKHEAQIKAYEKNSKSFLV"
     gene            complement(1463..2875)
                     /gene="leuC"
                     /locus_tag="RJ267_000805"
     CDS             complement(1463..2875)
                     /gene="leuC"
                     /locus_tag="RJ267_000805"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HDV7388676.1"
                     /translation="MTMAKTLYEKVFDAHVVYEGKNELPILYIDRHLIHEVTSPQAFS
                     GLKMAKRRMARADLTLATIDHDVSTKSMDLNACSDMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVGPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYTKDLILYLIAQYGTAKGTGYAIEFCGELIRNLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFQKYCEYWKSLRSDEGAKYD
                     ASITLDVSKIKPQISYGTNPSQVIGIDEKIPKISDFKNQSEQKSLLDALYYVNLEQDQ
                     VIEGVKIDIVFIGSCTNGRLEDLKIAADILKGLKIHKNVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKANSGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            complement(2862..3938)
                     /gene="leuB"
                     /locus_tag="RJ267_000806"
     CDS             complement(2862..3938)
                     /gene="leuB"
                     /locus_tag="RJ267_000806"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HDV7388677.1"
                     /translation="MKTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFEFNEAKI
                     GGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI
                     YTKKEIERIARIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYQDINLEYM
                     YVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKMTKDLN
                     AKSYLNTDEMGDCILEILKENDNG"
     gene            complement(3935..5470)
                     /gene="leuA"
                     /locus_tag="RJ267_000807"
     CDS             complement(3935..5470)
                     /gene="leuA"
                     /locus_tag="RJ267_000807"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HDV7388678.1"
                     /translation="MKDNKIIIFDTTLRDGEQALGSSLSINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFKAVQKIASKVKNSTICALSRALDKDIDMAYEALKVAKHFRIHTFIA
                     TSTLHMQDKLKKDFDEILSMAKRAIIRARSYTDDVEFSCEDAGRTPIDNLCFMVENAI
                     KAGAKTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGMATGNSLSA
                     ILQGARQIECTINGLGERAGNCALEEVVMAIKTRKDYLKGFYTDIKCENIFKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQTYEIISPSAIGIHENRMLMTARS
                     GRAMIKTCLENLGYDENTYNLDDVYERFLRLADKKGQVYDYDLEALMFLSYESEEENE
                     FVLEKLSVISGNIPTACVCMRIKEELKTEACTGNGPVEAVFNCIARITNLKPALKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGLSTDVIEASAQAFVSAYNAIYRSLKVEER
                     KMA"
     gene            5790..6419
                     /locus_tag="RJ267_000808"
     CDS             5790..6419
                     /locus_tag="RJ267_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388679.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRKKEYEIYGPMV
                     DRVYLDNAIYVKVMSSGRDVKTDNVTIKNGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVVVKTNLGEASAALKFNITIEYTKEN
                     QKLTRENSKSAGSFRDTKTYINLVVEKNTDSQICEKLLDDVEKYFIGGG"
     gene            complement(6443..7087)
                     /locus_tag="RJ267_000809"
     CDS             complement(6443..7087)
                     /locus_tag="RJ267_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HDV7388680.1"
                     /translation="MNKKFLSIIAGIALFSSSAFAEEKSGFFIGADAAYVQTKVQGNL
                     KHNQTGAVFNGDLSSSIPILGLKAGYRFNDLHRLYLAYNYSDEFSDIIRTPKLKIESD
                     FSTHKFLMGYDFTPKIFERVRAVAGGYLGYAKTNLDLKTSLLSLSQKFDGFVYGVKIG
                     AIFELGASNEIEAGFKVEKIEYNTRDFYQKAIGSNLYDPRQTNYGLYLGYTYKF"
     gene            complement(7333..7661)
                     /locus_tag="RJ267_000810"
                     /pseudo
     CDS             complement(7333..7661)
                     /locus_tag="RJ267_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779367.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
     gene            complement(7838..8221)
                     /gene="queF"
                     /locus_tag="RJ267_000811"
     CDS             complement(7838..8221)
                     /gene="queF"
                     /locus_tag="RJ267_000811"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HDV7388681.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYMPDKFVVELKAIKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVPK"
     gene            8381..8980
                     /locus_tag="RJ267_000812"
     CDS             8381..8980
                     /locus_tag="RJ267_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDV7388682.1"
                     /translation="MKKSIAIIGGSIAGLSAALFFASAKNEELDFDITVFDEGKADLK
                     AAAIYNVPFFPKGAKADEIYTHIKAQIASMLEVKYIDSKVVSISGEKGDFTVNDEQGL
                     GIKADYIIVATGANKSDIKELEDFVIPHELMPKPNKFCFKHHGRQIIKEGIYAAGLAS
                     GVTTMVACAMGSANEAACAILSDIKGAVSVYHDTPTTRV"
     gene            complement(8985..9866)
                     /gene="metA"
                     /locus_tag="RJ267_000813"
     CDS             complement(8985..9866)
                     /gene="metA"
                     /locus_tag="RJ267_000813"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HDV7388683.1"
                     /translation="MPLIIPENIPAYELLKEHAFIMGLRRAKHQDIRPQEILIVNLMP
                     KKIETENQILSLLANSPLQVNITLLATTSYVGKNTPFTHLEKFYKGLEEVKKHKFDGA
                     IVTGAPVEQMDFEKVAYWEELLEIFDFLKQNVTSSMYICWGAMAALKYFYGVDKISLD
                     KKIFGVYKHDKVSPDLLLTNLDEKVLMPHSRHSSMDEEQILALQKQGKLKILLRNKKI
                     GSALLRDEKNIFILGHLEYFKETLHQEYVRDNFIQKAKNYYDKKGNIKYNWRSNANTI
                     FANWLNYDVYQSTPFVL"
     gene            complement(9949..11220)
                     /locus_tag="RJ267_000814"
     CDS             complement(9949..11220)
                     /locus_tag="RJ267_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HDV7388684.1"
                     /translation="MNFNKETLALHGAYNFDTQRSISVPIYQNTAYNFENLDQAAARF
                     NLQELGNIYSRLSNPTSDVLGQRLANVEGGAFGIPVASGMAACFYALINLASSGDNVA
                     YSNKIYGGTQTLISHTLKNFGIEAREFDIDDLDSLEKVIDQNTKAIFFESLSNPQIAI
                     ADIEKINQIAKKHKIVSICDNTVATPFLLQPFKHGVDVIVHSLSKYVSGQGTALGGAL
                     IERKDLNDLLKNNDRYKAFNTPDPSYHGLNLNTLDLPIFSIRVIITWLRDLGASLAPQ
                     NAWLLLQGLETLAVRIEKHSQNAEKVANFLNSHPDIKGVNYPTLASNAYHNLFKKYFD
                     KNFASGLLSFEAKDYEHARRICDKTQLFLLAANLGDSKSLIIHPASTTHSQLSEEELQ
                     KAGITKATIRLSIGLENSDDLIADLKQAIES"
BASE COUNT         3829 a         2094 c         1636 g         3871 t
ORIGIN      
        1 cttttataga tataatgaac gctttatttc atagacaggt gtccgagcgg ttgaaggagc
       61 acgcctggaa cgcgtgtaaa gtgcaagctt tcgagggttc gaatcccttc ctgtctgcca
      121 tcaaataaac tttaaggcaa actaagttat aatacaaact tcatttgggg cattagctca
      181 gctgggagag cacaacgctg gcagcgttgg ggtcagcggt tcgaacccgc tatgctccac
      241 catatggttc cgtagctcag ctggtagagc actaccttga catggtagtg gccgttggtt
      301 caagtccaat cggagccacc atcacccttc cttatacaaa ggattatcat gcaaaacact
      361 atcatacaaa aagccgtcaa taaagattta aattctatac ttgaaatcac aaaagatgct
      421 ttaaatgcta tgaaaactat gaattttcac caatgggatg agaattatcc aaatgaaata
      481 gtttttcaag aagatataca agcacaagaa ctttatgtgt ttaaagaaaa tgatgaaatt
      541 ttaggcttta tctgtatcaa tgaaaaattt aaacctgaat tttacaaaca agttattttt
      601 aacaaaaatt atgatgataa agccttttat ctacaccgtt tagctgtcaa acaaaatgca
      661 aaaggcaaag gcgtggcaca aaaactttta aatttttgcg aaaattttgc cttggaaaat
      721 cacaaggcaa gtttaagagc agatactcat agtaaaaatt ttcctatgaa ttcgcttttt
      781 aaaaagcttg attttaattt ttgtggaaac tttgacatac ctaattacca agatcctttt
      841 ttagcttatg aaaaaattct aaaccaaaaa gctttttgag tttttttcat aggctttgat
      901 ttgtgcttca tgttttaaag ttaaagctat attatcaagc ccttccaaaa gacaaattct
      961 gtgaaaatca tctaaatcaa aagaaaaaat cttatcttta aaaaatactc ttttttccaa
     1021 caaagaaatt tctatatttt tatcttggga tttttttaac tcatcaacta tttccaaaac
     1081 ctcatcttta gcaagttcta tagtgagcaa accgtttcct aaggcattgt ttttaaaaat
     1141 atccgcaaaa gaaggtgcga taatagctct aataccataa tcaaccaaag cccaaggcgc
     1201 atgctctctt gaagagccac taccaaaatt ttcaaaactc accaaaatag agctattttg
     1261 atattctttt ttattgagat taaaatccat atttaaaaca ctttctttat catctaaata
     1321 acgcaaatca tggaacaaat gcttgccaaa accttgctta gacactgcaa gtaaaaattg
     1381 cttaggtata atttgatctg tgtctatatt ggcatattct aaaggacaag ctataccttt
     1441 gtgtataata aatttttgca tattaaactc ctaaatactt tctattatca caaataacac
     1501 cttctatggc acaagctgct gcacttgcag gactcatcaa atgagtgata gaacctttac
     1561 cttgtctgcc tacaaagtta cgatttgaag ttgaagcaac tctttgacct gaatttgctt
     1621 tgtcatcatt cataccaaga cacatagaac accctgcata tctccactca caccctgcct
     1681 cgataaaaat cttatcaagt cctaaatttt cagcttcttt tcttacttgc attgaaccag
     1741 gcacgattaa agctttaaca tttttatgaa ttttgagccc ttttaagata tcagcagcta
     1801 ttttaagatc ttctaaacgc ccatttgtgc aagatcctat aaatacaatg tcgattttta
     1861 ccccttctat aacttgatct tgctctaaat ttacataata taaagcatca agcaaagatt
     1921 tttgctcgct ttgattttta aaatcactta tttttggaat tttttcatct atgccaatca
     1981 cttgcgaagg atttgttcca tagctaattt gtggttttat cttgcttaca tctagagtaa
     2041 tactcgcatc atattttgct ccttcatcac ttcttaaact cttccaatac tcacaatact
     2101 tttgaaattc ttctccttta ggtgcaaatt cctttccctt aatatactca aaagtgatct
     2161 catcaggagc tatcatacct actttcgctc caaattctat agccatatta caaagagtca
     2221 ttctagcttc catgcttaga tttcttataa gttctccgca aaattctata gcatagcctg
     2281 tgccttttgc tgtgccgtat tgtgcgatca aatacaaaat caaatcctta gtataaacgc
     2341 ctttttgaaa ctgcccttta cattcgattt tcatagtttt aagtttggct tgttttaaag
     2401 tttgcgttgc catgacatgc tctacttcac tcgtgcctat accaaaggct aaagctccaa
     2461 aagccccatg tgttgccgta tgagaatccc cgcaaactaa agtaacccca ggtaaagtaa
     2521 agccaagctc aggacctact atatgaacta tgccttgatt tttatctcca agtcctaaaa
     2581 gccttactcc aaattcctta gtattttgca tcaaagttgt aatttgctct tttgccatat
     2641 cagaacaagc atttaaatcc atacttttag ttgaaacatc atgatctata gtagccaaag
     2701 ttaaatccgc tcttgccatt ctacgcttag ccattttaag ccctgaaaat gcttgagggc
     2761 ttgttacttc atggattaaa tgtctatcga tataaagtat aggaagttcg tttttgcctt
     2821 cataaaccac atgagcatca aagacttttt catataaagt tttagccatt gtcattctcc
     2881 tttaaaattt ctaaaataca atcccccatt tcatcggtat ttaaatacga cttagcattt
     2941 aaatccttag tcatttttcc ttgtgccaat gccaaagata tagcattttc tatatcctgt
     3001 gcggcttgtt cttctttgaa actatacttt aacatcaaag ccgcacttaa aatttgagct
     3061 atgggattgg ctatatttaa atgagctata tcaggcgcac ttccacctgc tggctcataa
     3121 agtccaaaac ctttatcatt caaacttgct gaacttaaca aacccaaaga tccattaatg
     3181 gcagctaact catcactcaa aatatcacca aaaagatttg aacaaagcat aacatcaaaa
     3241 atgctaggat tttttacaat ctgcatcgca gcattatcca catacatgta ctctaagttt
     3301 atatcttgat aatcttttgc aacatttgcc accacttctc gccacaaaat agaacttgct
     3361 aaaacattcg ccttgtcgat taaatggact tttttctttc ttattcttgc actttcaaaa
     3421 gcgatacgag ctatcctttc tatctctttt ttagtgtaaa tttcagtatc atacgcactt
     3481 tctttaccta aatcctgctt accaaaataa atcccacctg taagctctct aacacataaa
     3541 atatccactc ctttttggat aatctcattt tttaaaggtg aagcatgggt taaactttca
     3601 taaattttac aaggacgcaa atttgcaaac aaattaaaat gctttcttaa aggcaaaagc
     3661 gaggctcttt caggtctttg atctatgggc aaattatccc atttaggccc acccacagaa
     3721 ccaaataaaa tcgcatcact ttgctcacaa agctttaaag tttcatcact taaagccact
     3781 ccataagcat ctatacttgc accgcctatt ttagcttcat taaattcaaa actaaaattg
     3841 tatttttgtg cgataaaagt taaaattttt aaagcctctt tcatcaccaa aggccctatg
     3901 ccatctcctg ctaaaacagc tactttataa gttttcatgc cattttcctt tcttctactt
     3961 ttaaagagcg ataaatcgca ttgtaagcac tcacaaaagc ttgtgctgaa gcttctatca
     4021 catctgttga aagtcctttt ccatggaatt ttctcccttt aaattccaaa tctacatcca
     4081 cttgcccttg agcatctact cctgaacttt ttgcattgat actataagct tttagcgcag
     4141 gctttaaatt cgttatccta gcaatgcagt taaaaactgc ttcaacagga ccatttcctg
     4201 tgcaagcttc agtttttagc tcttctttga tacgcataca aacacaagca gttgggatat
     4261 ttccactgat cacacttaat ttttcaagca caaattcatt ttcttcttca ctctcataac
     4321 ttaaaaacat caaagcttct aaatcataat catatacttg acccttttta tccgcaaggc
     4381 gtaaaaaacg ctcataaaca tcatctaaat tataagtatt ttcatcatag cctaaatttt
     4441 caaggcaagt ttttatcata gcccttccac ttcttgctgt cattaacata cgattttcat
     4501 gaattcctat ggcactaggg cttatgatct cgtaagtttg cctattttta agcactccat
     4561 cttgatgaat gcctgaacta tgagaaaacg cattgctacc cactatagct ttatgtgaag
     4621 gtatgctttc attagtgata gctgaaacca attttgaagt tttaaagata ttttcacatt
     4681 taatatcagt ataaaaacct tttaaataat cttttctagt ttttatcgcc ataaccactt
     4741 cttctaaagc acaattgccc gccctttcgc caagtccatt tatagtgcac tctatctgtc
     4801 ttgcaccttg taaaatagca cttaaactat tgcccgttgc catacctaag tcattgtgac
     4861 aatgcacaga aataatagct ttgtctatat ttggcacttt gttaaataaa attttgatga
     4921 tattagcaaa ttcacttggt aaggtatagc ctacggtatc tgggatattt atagttttag
     4981 cgcctgcttt tatcgcattt tccaccataa aacaaagatt atctatcgga gttcttcctg
     5041 catcttcgca tgagaattct acatcatcag tataagatct tgctcttata atcgctcttt
     5101 ttgccataga caaaatttca tcaaaatctt tttttaattt atcttgcata tgcaaagtcg
     5161 aagtggctat aaaagtatga attctaaaat gctttgccac ttttaaagct tcataagcca
     5221 tatctatatc tttatccaat gctctagaaa gtgcacaaat agttgagttt ttaaccttag
     5281 aagcgatctt ttgcaccgct ttaaaatccc cttgtgaaga taccggaaaa cctgcttcta
     5341 taacatctac gcctaaattt tcaagcgcta aagcgatttg taatttttga ttgatactca
     5401 aagaactgcc taaagcttgt tctccatcac gcaaagtggt atcaaagatt atgattttat
     5461 tatctttcat gatttaatcc tttaaaacca aacagactga atgaattaaa aattcaaaaa
     5521 cttaacaaca atgataaaaa attaaaaatg taaaaaatga ttaaaaataa aattgagttt
     5581 tagagtgaga gttgcagtag cagattaaaa gtattgtctt tacttttttg ttgaactgaa
     5641 tttgaaattt caaaaatttg tttcatcttt tcctcctttg ttaaaattaa tacttaatgt
     5701 atcatatttt tagtaaatgt gtttgtaaaa ttcttaaatt aagaaaatta ttgatataat
     5761 tgtaatttta agtaacaaaa aggaagttga tgttaaaaga actcttagag attaaaaaag
     5821 aaatggaacc tgttatccac gaagccaatg tgaaattaaa tgtcctagct cgtgaagtca
     5881 tagtccgaaa aaaagaatac gaaatttatg ggcctatggt agatcgtgtt tatcttgata
     5941 atgccattta tgttaaagtt atgtcaagtg gacgcgatgt aaaaacagac aatgtgacta
     6001 taaaaaatgg tttttatatg gtttttgttg cccctgaaaa agaaagtaca aaagatatca
     6061 aaaataaact caaagtagct tatgaaggac ttgataacaa atttatcgct acacttatac
     6121 gatcttgcca acgctttaaa gagatcataa acaaaaccca agctacactt gctaaagctt
     6181 ctaaaatgaa tgtggtagta aaaacgaatt taggtgaagc aagtgctgct ctaaaattta
     6241 acatcactat agaatatact aaagagaatc aaaaactcac tcgtgaaaat tcaaaatcag
     6301 caggaagttt cagagatact aaaacttata tcaatcttgt agtagaaaaa aatacagatt
     6361 ctcaaatttg tgaaaaacta cttgatgatg ttgaaaaata ctttatcggt ggaggttgaa
     6421 atcctaccga taaaatactt cattaaaatt tataagtata gcccaagtat aagccgtaat
     6481 ttgtttgtct tggatcgtat aaatttgatc ctatagcttt ttgataaaaa tctcttgtat
     6541 tatattcgat tttctctact ttaaaacctg cttcgatttc attagaagca cctagctcaa
     6601 atatagcacc gattttaact ccatacacaa aaccatcaaa tttttgagat aaagacaata
     6661 aggatgtttt taaatcaaga tttgtttttg cataacccaa atatccacct gcaacagctc
     6721 ttactctttc aaaaattttt ggagtaaaat cataacccat caagaattta tgcgtactaa
     6781 aatcactttc aattttaagt ttaggagttc ttataatatc gctaaattca tcagaataat
     6841 tataagcaag atataatcta tgcaaatcat taaaacgata acccgctttt aaacccaaaa
     6901 taggaatact gctagacaaa tcgccattaa aaacagcacc ggtttgattg tgttttaaat
     6961 ttccttgaac tttagtttga acataagctg catccgcacc tataaaaaag cctgattttt
     7021 cttcagcaaa agccgagctt gaaaacaatg ctatacctgc aataatgctt aaaaactttt
     7081 tattcatggt ttgcctcctt gaatagaatt ttgaggtgat attgtattat attgataatt
     7141 agtatagtat tatttttatt actttttcat tttttctaat attatgtaag gattttgttt
     7201 acaaatttaa aaaaaaatca gctttaaaat acttgtaaat ttatatttgt taaaaaacta
     7261 tgcaattagg aatctaaaaa agagcgaaaa cacagagtgg atttcactct ttgtaaaaag
     7321 ttcaaatcaa aatcaattat caaattcttg gcctaaaaaa ttaccattgc gatcaaaata
     7381 aagctccata taattgttaa gcttgatttc ataaccatac gcttcccaat ccatatctac
     7441 gataaaagca cctggataga gattttgaat ttgactggta atatttttgg caagccatta
     7501 aaatgatctt gtggtggcac agcatattgc ggatatacag gatacgaagt agcaggcgca
     7561 ggcgcaactg cagaggtttg ggctgaaaca ttagaaattg tatttgcact tgcaagtatg
     7621 gcagaacatg ctaaaatgac agggataaat tttactttca tttcttcttc cttaaaatgt
     7681 tttagtaagt gcaagtttat gctttttttg tgaagtgagc gtgaaagaga aataaaaata
     7741 ttttaaaaat agctataaat ttaagatatc aaataaattt ttaaactttt gcactttcaa
     7801 aagctattta aaactttaaa atgcaaaagc tttgtcttta ttttggtact accatatcgc
     7861 tacgacattc tatgactgtg tgtacatttc cgcgcggatt aaaatcccct actactttaa
     7921 tccattttgg cttgagtttg tcttttagag tattataaat ttcattgata cttgcttcat
     7981 gtgaaacatt tctatacata aaagtattga tataaagttt tatcgcttta agctcaacca
     8041 caaatttatc aggcatatac tcaagataaa tcgttgcaaa atcaggataa cctgaacgcg
     8101 gacaacaaca cataaattca ggcaaggtga ttttaatgat atagtcattt ttagcatcat
     8161 ttggccaaat ttccatattt tctacatcaa attctttaat ttctttttca ccataacgca
     8221 tgagctttcc ttattgaaaa tttttagaaa attatataaa aaattacttt tagagcaatt
     8281 gaaaaataaa catttttagc aaattgcata aaaaagacaa atattatatt aaataaagct
     8341 ttttatacta gaataaggca aatctttcaa aaggaaaaaa atgaaaaaat caattgcaat
     8401 tataggcggt agcatcgcag gacttagcgc ggctttattt ttcgcttcag ctaaaaatga
     8461 agaacttgac tttgatatca ctgtttttga tgagggtaaa gcagatttaa aagcagcagc
     8521 aatttacaat gttccttttt tcccaaaagg tgcaaaagca gatgaaattt acactcacat
     8581 aaaagcacaa attgcttcta tgctcgaagt aaaatacatc gattcaaaag tagtaagcat
     8641 aagcggagaa aaaggagatt ttactgttaa tgatgagcaa ggcttgggta taaaagcaga
     8701 ttatatcatc gtagcaacag gggcaaacaa aagcgatatc aaagaacttg aagattttgt
     8761 aataccgcat gagcttatgc caaaaccaaa caaattttgc ttcaaacatc acgggagaca
     8821 gattatcaaa gaaggaattt acgcagcagg acttgcttca ggtgttacga ctatggtagc
     8881 ttgcgcgatg ggaagtgcca atgaagcagc ttgcgcgatt ttaagcgata tcaaaggtgc
     8941 agtaagcgta tatcacgata cacctactac aagagtttaa atcatcaaag cacaaaaggt
     9001 gtgctttgat acacatcata attgagccaa tttgcaaaaa tggtatttgc atttgaacgc
     9061 caattgtatt ttatattgcc ctttttatca taataatttt tagctttttg tatgaaatta
     9121 tctcttacat attcttgatg taaagtctct ttaaaatatt ccaaatgccc taaaataaaa
     9181 atattctttt catctcttaa taaagccgaa ccgatttttt tatttctaag caaaattttt
     9241 aatttccctt gtttttgtag tgctaaaatt tgctcttcat ccatgctaga atgtcttgaa
     9301 tgaggcatta aaaccttttc atctaaattt gttaaaagca gatcaggcga aactttatca
     9361 tgcttataga ctccaaaaat tttcttatct aaagagattt tatccacacc ataaaagtat
     9421 tttaaagcag ccatggcacc ccaacaaata tacatagaac ttgttacatt ttgctttaaa
     9481 aaatcaaaaa tttctagcaa ttcttcccag taagcaacct tttcaaaatc catttgttcc
     9541 acaggagctc ccgtaacgat agcaccgtca aatttatgtt ttttaacctc ttcaagaccc
     9601 ttgtaaaatt tttccaaatg agtaaaagga gtatttttac ccacatagct agtcgtggct
     9661 aaaagtgtga tatttacttg caaaggagaa tttgcaagta agcttagaat ttgattttct
     9721 gtttcaattt tttttggcat aagattgaca atcaaaattt cttgcggcct gatatcttga
     9781 tgctttgctc tccttaatcc catgataaaa gcatgctctt ttaaaagctc ataagcgggt
     9841 atattttctg gaataatcag tggcattttt tctcctttat ttaataaacc ttatttatga
     9901 taaagcatgg tggaattttt atctcattca ctcaatgcaa acacactttt aactttctat
     9961 agcttgtttt aaatccgcta tcaaatcatc gctattttca agtcctatgc ttaagcgtat
    10021 agtagctttc gtaatgcctg ctttttggag ttcttcttcg cttagttgcg aatgagtagt
    10081 agaagcagga tggatgatca aagacttgct atcacccaaa tttgcagcaa gtaagaaaag
    10141 ttgagtttta tcacaaattc ttctagcatg ctcataatct ttagcttcaa agcttaaaag
    10201 cccgctagca aaatttttat caaaatattt tttaaataaa ttatgataag cattacttgc
    10261 taaagtagga taatttacgc ccttgatatc aggatgagaa tttaaaaaat tcgcaacttt
    10321 ttcagcattt tgactgtgtt tttctatacg cactgccaag gtttcaagtc cttgtaaaag
    10381 taaccaagca ttttgaggtg ctaagctagc tcctagatct ctaagccaag tgatgatgac
    10441 tctaatacta aaaatcggca aatcaagtgt atttaaattc agtccatgat aacttggatc
    10501 aggagtgtta aaagctttat atctatcgtt atttttaagc aagtcgttta aatcttttct
    10561 ttctataagt gctccaccca aagcagtgcc ttgaccgctt acatatttac ttaaactatg
    10621 cacgattaca tccacgccat gtttaaaagg ttggagtaag aaaggagtag caacggtatt
    10681 atcacaaatg ctaacgattt tatgtttttt tgctatttgg tttatttttt ctatatcagc
    10741 tatggcaatt tgaggatttg aaagactttc gaaaaaaatc gcttttgtgt tttgatctat
    10801 aactttttcc aagctatcta aatcatcgat atcaaattcc ctagcttcta tgccaaaatt
    10861 tttaagtgtg tgagaaatta aagtttgagt cccaccataa attttgttcg aatacgcgac
    10921 attatctccc gaacttgcta aattgataag agcataaaaa caagctgcca taccgctagc
    10981 aacaggaatt ccaaaagccc ctccttcgac attagcaagt ctttgtccta aaacatcgct
    11041 tgtaggattg ctaagtcttg agtaaatatt gccaagttct tgaagattaa accttgctgc
    11101 agcttgatcc aaattttcaa aattatacgc agtgttttga tatataggca cactaatact
    11161 tctttgagta tcaaaattat aagctccgtg taatgctaaa gtttctttat tgaaattcat
    11221 tttttatcct tattgtatca atgaaaaaat gttaaaaagc tttttatcgg ctttaaacta
    11281 ggctatttga aaatgtaaat ttatagaata tgagtatata cgagtagatt aagcgtgcca
    11341 agcacgcata cagaaagaag aaagcattaa gttaaaacta atataagaca ttttttctcc
    11401 tttctaaaaa attattgatt attctatctt
//
LOCUS       DAPIWQ010000043        11409 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.043, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000043 DAPIWQ010000000
VERSION     DAPIWQ010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11409
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.043"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(110..769)
                     /locus_tag="RJ267_000815"
     CDS             complement(110..769)
                     /locus_tag="RJ267_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDV7388685.1"
                     /translation="MSIDFLAIISVAFLSSFGHCYSMCGGFNLLFINLNSKSNNLFLL
                     TFIYNLFRIFAYIVLGIIFGTFGNILAINAKVQSLSFFILGIFMMILGFALIFRGNML
                     SFIENNVFFDSFVKKIIKKSKNFKGLKSAIFLGFSNGFVPCGLVYFFIANAMSKQNIF
                     EGILVMMIFGISTLPAMLFFSKISQFFSDFLKNLFNYLSYGVIVCYGINLAYIGFKAF
                     Q"
     gene            complement(766..1884)
                     /gene="carA"
                     /locus_tag="RJ267_000816"
     CDS             complement(766..1884)
                     /gene="carA"
                     /locus_tag="RJ267_000816"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HDV7388686.1"
                     /translation="MKAYIYLENDIFLSAKAFGKSGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEK
                     HGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVS
                     TKKNYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNILNELVEVGFEVEVYPYNV
                     KADELITLYKKGEIQGVFLSNGPGEPRILKQEIAEIKKLAEAKIPMLGICLGHQLLSN
                     AFGYETYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVPEELAQVAHITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            complement(1884..2435)
                     /locus_tag="RJ267_000817"
     CDS             complement(1884..2435)
                     /locus_tag="RJ267_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HDV7388687.1"
                     /translation="MRIKLPHIPYIANKMMLDIANSSFVEIKDQLEKLKVCIIEVLEK
                     DILNERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHL
                     AHQILEELVENDYINFIVSENRVKNLIFSSIESYLKIYEKLEDEVYEKISNYKTKPIP
                     GSEEYDLIFEKLYQEELRKKGMF"
     gene            complement(2528..3046)
                     /locus_tag="RJ267_000818"
     CDS             complement(2528..3046)
                     /locus_tag="RJ267_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HDV7388688.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKAQIELQTREFDEAR
                     QSLEAYKASFEALQKERLENLEKKEAEVNATLAKIEELKLENARLVEEQQKILNSIND
                     KTQGRVKEIYSQMKDAAIADVLSQMDAEDASKIMLSLESRKISGVLSKMDPKKASELT
                     LLLKNLDNNASN"
     gene            complement(3039..3467)
                     /locus_tag="RJ267_000819"
     CDS             complement(3039..3467)
                     /locus_tag="RJ267_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FliJ family protein"
                     /protein_id="HDV7388689.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEHEKAYELSRQEC
                     ESLGVLPKSGSIAELRSNLSMAQVGREALARAKEKVELSKKEMNHYQFLYQKAHLDYE
                     KMKVLEAEEIKQKQKELAKAEEKFLDEIAISRFFKGEKDD"
     gene            complement(3464..4714)
                     /locus_tag="RJ267_000820"
     CDS             complement(3464..4714)
                     /locus_tag="RJ267_000820"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HDV7388690.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALIK
                     DFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGTLTGLGLNPKEAGNIIGIVKAYATRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYIPSDLENVQPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            complement(4742..4839)
                     /locus_tag="RJ267_000821"
     tRNA            complement(4742..4839)
                     /locus_tag="RJ267_000821"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4803..4805),aa:Sec,seq:tca)
     gene            4979..6187
                     /gene="yedE"
                     /locus_tag="RJ267_000822"
     CDS             4979..6187
                     /gene="yedE"
                     /locus_tag="RJ267_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HDV7388691.1"
                     /translation="MNSFKQKYLINFWDNSRSMIALGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMNLDGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWLFTVFMVLGIYLG
                     VKICNTSFFKPKAKLERVNKENLPLNKQSLRTKLYFNLGILLFIAFLVWVFYLVFTNG
                     NISTQNKQSLLALALIFGFVFGFVISRGQICFTSCFRDLFLFGRDNAIKGALIGMIIA
                     SLIAFAFILQGHTSKLIELSPAVAVGAFLFGFGIVFAGGCECGWTYRAFEGQSHFIIV
                     GIANIIGTMILALSYNFLPKAFKEGIKINLLTEFGNLNGFFINLILFILMFVFVVFYK
                     KHFFKNQLKG"
     gene            6191..6418
                     /gene="yedF"
                     /locus_tag="RJ267_000823"
     CDS             6191..6418
                     /gene="yedF"
                     /locus_tag="RJ267_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HDV7388692.1"
                     /translation="MKITYSLNLQGEACPYPAIATLDVLPKLKSGEILEVLCDCPQSI
                     NSIPQDAKNRGFKVLEIDQSGPTLRFLIQKP"
     gene            complement(6434..7903)
                     /gene="putP"
                     /locus_tag="RJ267_000824"
     CDS             complement(6434..7903)
                     /gene="putP"
                     /locus_tag="RJ267_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HDV7388693.1"
                     /translation="MEVVQINTPIAVMFVVYALLMLYIGFYFYKQNKNSEDYFLGGRT
                     MGPVISALSAGASDMSGWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRI
                     YTSVIANSLTIPDYFETRFDDDKHILRIVCAVVILIFFTFYVSSGLVSGAKLFESTFG
                     IRYDYALTTGTIIIVAYTFLGGYKAVCWTDMIQGLLMMMALIIVPLVMLYHLGGFGEA
                     MNIVREIKPQALSMGEGVGIVSIISALAWGLGYFGQPHILVRFMSIRSTKDIPMATFI
                     GIAWMAVCLLSACMIGILGIAYVHKFELSLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKKIFREDAPSHIVLNLGKLGVLLVAVIAFLISTDK
                     NSSVLSIVSYAWAGFGASFGSVMLFSLFWSRMTRVGAILGMITGAATVVLWKNFANSG
                     LYEIVPGFLVASVVIIIASLFTNVRSGTKAAYEKMLKEL"
     gene            complement(7921..11409)
                     /locus_tag="RJ267_000825"
     CDS             complement(7921..11409)
                     /locus_tag="RJ267_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HDV7388694.1"
                     /translation="MIQKALALAEELQGQIEANISNSEKEFHAKMQKLLNNPKNKVML
                     IELLDRSFRCKDKNASFELIEYTLSKYGIADFFSTFEKFLLFSFLNFGKFAPNLSVPF
                     FVKHLREDTKAMVLDANPSVLEPHIKKRKEQDKITLNVNLIGEEVLGEAESKYRMQKY
                     EEALKSSYITYISIKITTIFSQINIIDFNYSKEEVVKRLDYLYALALEEEKKQGVSKF
                     INLDMEEFRDLELTVAAFMESVAKFDIKAGIVLQAYIPDSYKYLKKLFAFSKERVLKG
                     MKPIKIRFVKGANMESEETIASQRGWELPTFYKKIDTDSNYNKMLDFILEGDNYKYIN
                     IGIASHNIFEIAYAYTRISEVGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDE
                     AHFNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDKNWNIQKELFLKSLEGIKTLDNTT
                     HRKQDRNKESNIISSYEGKKFSNESDTDFILAQNRVWAKEIKTKYENLKDYDVYPVIG
                     ELDFKAENLNVLEVKDKIEDRVIGKAYLAGEKEIKQALEVAKNSKFTQKSHDEIYQIL
                     AKSAKLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFIEFYPHSLEELKKQNPKVT
                     FTPKGIGVTIAPWNFPIGISVGTIAAPLAAGNVVIYKPSSLSTLTGYMLCKCFWDSGI
                     PKDALIFLPSKGSDISKYLLIDEAIKFSILTGGEDTAYAMLKANPTLLLSAETGGKNA
                     TIVSKFADRDSAIKNIIHSAFSNSGQKCSATSLLVLEEEVYHDEEFKKTLVDAASSMA
                     VGNPFEFKNKLGTLADKPSSKVQKALDELQPYEEWALKPKFLEDNPYLMTPGIKYGTK
                     KGDFTHMNELFVPILSVMKAKDLKEAIDIVNSTGYGLTAGFESLDEREWEYFHTHIEA
                     GNIYINKPTTGAIVLRQPFGGIKKSAIGLGRKVGIYNYITQFLEIKQEDFDDHLIEDK
                     FSKKLAQIDLKEAQDFINNLIKMSQSYAYHYKNEFSVSKDYVNIRGEDNLFSYTKIKN
                     MVLRLCGNESLKDVLGVVLGANIANIDLSISYDEQDVSMIERIVQSIGAKVLFLKENK
                     ENFIKSIKEYERVRYLAKPDVNDEIYKEAAKLAKIIIREKPLLNGRFELLNYFNEKAL
                     SISFHRYGNLGIRAIS"
BASE COUNT         3814 a         2118 c         1400 g         4077 t
ORIGIN      
        1 atttgacaaa gcttatcact gacaaaaatt aaatttcctt gaacatcagc tcttgaaaaa
       61 attgtatttt tttcaagagc tttaaaaaac tgatctttaa aaaaatcttt cattgaaaag
      121 ccttaaaacc tatataggca agatttatac cgtaacaaac aataacgcca tacgataaat
      181 aattaaataa atttttcaaa aaatcactaa aaaactgtga aattttagaa aaaaataaca
      241 tcgcaggtaa agttgatatt ccaaaaatca tcattaccaa aataccttca aaaatatttt
      301 gcttactcat tgcattggct ataaaaaaat acaccaatcc acaaggaaca aaaccatttg
      361 aaaatcctaa aaatatggct gattttaatc ctttaaaatt tttagatttt ttaataattt
      421 tctttacaaa actatcaaaa aaaacattat tttcaataaa agataacata ttacctctaa
      481 aaataagagc aaaacccaaa atcatcataa atataccaag aataaaaaat gacaaacttt
      541 gaaccttggc attgattgcc aagatattcc caaaagtccc aaaaattatc cctaaaacaa
      601 tataagcaaa aattctaaac aaattataaa taaaagttaa taaaaataaa ttattgcttt
      661 ttgaattcaa atttataaaa agtaaattaa aaccaccaca catagaatag cagtgtccaa
      721 aactagataa aaaagcaacg ctgataatag ctaaaaaatc tatactcaca tcaaattcat
      781 aaattcttta aaaatatact tactttcatg aggacctgaa gaactttctg gatgatgttg
      841 cactgaaata ataggatagt ctttatatct tactccttca acattatcgc caaataaatt
      901 tctatgagtg atatgagcca cttgagctaa ttcttctgga acattataat tatgattttg
      961 tgcggtaatt tctaccgttt ttgtatcaag attgatcaca ggatgatttg ctccatgttg
     1021 tccaaatttc attttataag tttcatatcc aaaagcatta cttaaaagct ggtgacctaa
     1081 gcaaattcca agcataggaa ttttagcttc tgcaagtttt ttaatctctg caatctcttg
     1141 ttttaaaatc cttggctcac ctggaccatt agaaagaaac acgccttgaa tttcaccttt
     1201 tttatacaga gtaatcaact catctgcttt aacattatat ggataaactt ctacttcaaa
     1261 acctacttct acaagttcat ttaagatatt tgttttaaca ccataatcta taacagcaac
     1321 ttttttctca cttcttttag catcattaaa tttttgaaaa ctagcgttcc aaacgccttg
     1381 tttatgagaa taatttttct tagtgctaac ttcttttaca aaatttactt catcaatttt
     1441 tgctgatttt tctaaggcga tttttaaatc ttctttattt gaaatttcag ttgaaattac
     1501 agctcttaaa ttgccattat ttcttatcat ttttactaga tatctcgtat caagttcata
     1561 aattcctatt tttccatgtt tttcaagata atcttgcaga ctttctttag cgcgaaaatt
     1621 tgaaaaactg gaacttaatt cacgcattaa aacaccactt gcaaaaattt ccttgctttc
     1681 attatcattt tcattggttc ccactatacc aatttctggc atggaaaata cgataaattg
     1741 ccctgcataa gaaggatctg aaataatttc ttgataccct gttaaagaag tgttaaatac
     1801 aagctctcca aaaaaagtac cgctctttcc aaaagcctta gcacttaaaa aaatatcatt
     1861 ttctaaataa atataagcct tcattaaaac ataccttttt ttctaagctc ttcttgatag
     1921 agtttttcaa agataagatc gtattcttcg ctacctggaa taggttttgt tttataattg
     1981 ctaattttct cataaacctc atcttcaagt ttttcataaa ttttaagata agactctatg
     2041 cttgaaaaga ttaaattttt aactctattt tcactcacta taaaattaat ataatcattc
     2101 tctacaagtt cttctaaaat ttgatgcgct agatgattat gtctatcttc agaatctaaa
     2161 atcacattaa attcaggagc taactttttc ttcacaagcc aaaacatatt tttacgatct
     2221 acttgcataa gctccatttc atcttcttgt tgctctaaaa gctcttttac tctttcatct
     2281 aattttcttt catttagaat atctttctct aaaacttcta ttatacatac cttaagcttt
     2341 tctaattgat ctttaatttc tacaaaagaa gaattagcta tatctagcat cattttattt
     2401 gcgatataag gaatatgtgg taattttata cgcatcttaa aaacctttta tttgataatg
     2461 tttgaaataa tagcttattt ttggtaaaag aatgttaaaa atgaaaaatt ttcattattt
     2521 taatcaccta attactagca ttattatcta aatttttcaa aagcaaagta agctcgctag
     2581 ctttttttgg atccatttta gataaaacac ctgaaatttt acgcgattcc aaagaaagca
     2641 ttattttgct tgcatcctct gcatccattt gacttaaaac atctgcaatg gctgcatctt
     2701 tcatttggga ataaatttct ttaaccctac cttgtgtttt atcattgatt gaatttaaaa
     2761 tcttttgttg ttcttctaca agccttgcgt tttcaagctt taattcttca atttttgcca
     2821 aagttgcatt aacctcagcc tctttttttt ctaaattttc aagcctttct ttttgcaaag
     2881 cttcaaaaga ggctttataa gcttctaaag attgtcttgc ttcatcaaat tctctagttt
     2941 gcaattcaat ttgagctttt ctagcttcaa aatactgctc acaatcttgt tcagctccaa
     3001 aaactacact tgaaataaaa actaacaata taaatttttt aatcatcttt ttctcctttg
     3061 aaaaaacgac tgattgcaat ttcatctaaa aatttttctt cagccttggc aagttctttt
     3121 tgcttttgtt taatttcctc ggcttctaaa accttcattt tttcataatc taaatgtgct
     3181 ttttgatata aaaactgata atgattcatt tcttttttag aaagttctac tttctcctta
     3241 gctcttgcca aagcctcgcg tcctacttgt gccatactta aattcgatct taactctgct
     3301 atagatcctg attttggcaa tacgcctaaa ctttcacact cttggcgtga aagttcataa
     3361 gctttttcat gttcaagctg tctttgtttg gcttgattaa gatttgattc tgctttatca
     3421 agttgttgtt ttcttacctt tacaacagaa ttatatttac ttttcataag atgatagtat
     3481 catctctttc agggctagta gaaatatact ttaccttaac ccctgcaagc tcttcaagtc
     3541 ttgctatata ttttttagca ttttctggca ataaatcata atcttttata ccaaaaactt
     3601 tatcccaacc atccatttct tcataaatag gttgaacatt ttctaaatca cttggtatat
     3661 agtcgatttc cataccctta tattcataag cacgacaaat ttttatcttt tcaaaaccat
     3721 ctaaaacatc aagcttcatc aaagataaag catcaagacc attaagcctt gctgtatatc
     3781 ttacagcaac cgcatcaaac catccacagc gtcttttgcg tcccgtgctt acgccaatct
     3841 cttttccaat ttgcgcaatt ttttctccat cttcgccctt atcctcagta ggaaaagctc
     3901 catttcccac acgcgttgca taagctttta caatacctat aatatttccc gcttctttag
     3961 gatttaaccc aagtcctgtt aaagtgcctg ctgaaatagt acttgaactt gtaacataag
     4021 gataagttcc atgatcaata tcaagcatag aaccctgagc tccttctaaa agtactcttt
     4081 tatcttcatc taaagccttc caaagcattc ttgtagtatc tgtaatataa ggagttaaaa
     4141 tttcattaaa acgttttaaa tcagcaagca attcttcagc acttggaatt tcaatttcaa
     4201 gcatttcaaa aaaagtttta ttagcttcaa aatcttttat caaagcctcg caaagtcttt
     4261 gtggttctaa aagctctcca actctatgtc ctgtacgatt aatcttatct gcataagaag
     4321 gtcctatacc cttacctgtt gttcctatgg catttttgcc tttgagcttt tcttttgcaa
     4381 tgtctattaa agaatgatgt tttaaattta aatgagctct atcgctgata tataatctac
     4441 cttttaaatt ttcaaattga gccatttcag caatcaatac ttcaggagaa accacaactc
     4501 catttccgat aatattaata catcttggat gcaaaactcc acttggcata agatgaagcg
     4561 catatcttac accatttacc caaatcgtat gtcctgcatt gtgtccacct gcacttctgc
     4621 aaacaaaatc ataattttca cataatttat caactacctt accttttcct tcatcgcccc
     4681 attgaatgcc gacaataata tctgctttgc tcataaaaat ttccttgatt ttacttaata
     4741 ttggcgagaa gatgagagaa tcgaactccc caaagaatag tcaactatcc tttcatctga
     4801 tttgaagtca gtggcgatca ccagatacgc taatcttcca aagtgataat tatagcgatt
     4861 tttaatgaaa aacaaaataa atttatcaat attctttttg acttcatatt aaatttaagc
     4921 tataatctca ctctttttta gcatcaagtt ttgatgatta catttttagg atctttcttt
     4981 gaattctttt aaacaaaaat atttaatcaa tttttgggac aattcccgtt ctatgattgc
     5041 acttggaatt ttaagtgcag tgtattttgg gatttttggt ggcgtttggg ctgttactgg
     5101 agaaatgaca cgttggggtg gcgagttttt agagctttta ggtatgaatt tagatggata
     5161 ttcttattac caaaagcaaa atttaaatgg aaccccttta acaagaactg atggtattat
     5221 gctcataggt atgtttatag gttgtttagt agccgcactt ttagctaaca aagtcaaatt
     5281 tcgtctacct gctagcaata taagaatttt tcaagcaata gtaggtggaa ttctttcagg
     5341 atatggagca agacttgcat ttggatgcaa tttagctaat ttttttacag gtttacctta
     5401 tttttcttta cacacttggc tttttactgt ttttatggtt ttaggaattt atctaggagt
     5461 gaaaatttgc aacacttcct tttttaaacc taaagctaaa ttagaacgtg taaataaaga
     5521 aaacttgccg ttaaacaagc aaagtttgcg tacaaaatta tattttaact taggcatatt
     5581 gcttttcata gcctttttag tttgggtgtt ttatcttgtt tttacaaatg gcaatatcag
     5641 cacacaaaac aaacaaagtc ttctagcttt agcactgatt tttggttttg tttttggctt
     5701 tgttatttct agagggcaaa tttgttttac ttcttgcttt agagatttat ttttatttgg
     5761 tagagataat gctataaaag gcgcattaat cggtatgatt atcgcctctt taatcgcttt
     5821 tgcttttatc ttgcaaggtc atactagcaa actcatagaa ctttctcctg ctgtagctgt
     5881 gggagcattt ttgtttggtt ttggtatagt ttttgccgga ggttgcgagt gtggttggac
     5941 ttatcgtgcc tttgaaggac aaagtcattt tataatagta ggaattgcaa atataatagg
     6001 aactatgatt ttagctttaa gttataactt tttaccaaaa gcttttaaag aaggtataaa
     6061 aatcaatctt ttaactgaat ttggcaattt aaatggattt tttatcaacc ttattttatt
     6121 catcttaatg tttgtttttg tagtatttta caaaaaacac ttttttaaaa atcaacttaa
     6181 aggataaaca gtgaaaatta cttatagttt aaatttacaa ggtgaagctt gtccttatcc
     6241 tgctatagca acacttgatg tcttacctaa gcttaaaagt ggagaaattt tagaagtact
     6301 ttgtgattgt ccacaaagta tcaattccat acctcaagat gcaaaaaacc gtggttttaa
     6361 agtgcttgaa atcgatcaaa gtggacccac actaagattt ttaatccaaa agccttaaaa
     6421 aaggctttta ttctcaaagc tcttttaaca tcttttcata agctgcctta gttccagatc
     6481 ttacatttgt aaacaaactt gcaataataa tcaccaccga agctactaaa aaccctggaa
     6541 ctatttcata aagacctgaa tttgcaaaat tcttccaaag caccacagta gcagctcctg
     6601 ttatcatacc taagatcgct cctactcttg tcatcctact ccaaaataaa gaaaaaagca
     6661 ttacagaacc aaaagaagct ccaaatccag cccatgcata agaaactata ctcaaaacac
     6721 ttgagttttt atcagtagaa atcaaaaacg ctattacagc taccaataaa acacctaatt
     6781 tacctaaatt taatacaata tgacttggtg catcttctct aaaaatcttt ttataaaaat
     6841 cttccgctat agtagaactt gaaaccagca attgtgaact tgccgtactc ataatagccg
     6901 ctaaaatagc actgagtaaa atacctgcta tccaaggatt aaataaaagc tgcgacatca
     6961 cgatgaaaat cttttcagga tcttgcaaac ttaattcaaa tttatgcaca taagctatac
     7021 ctaaaatacc tatcatacaa gcacttaaaa gacaaaccgc catccaagca atacctataa
     7081 aagtggccat aggaatatct ttagtagaac gaatcgacat aaaacgcact aaaatatgtg
     7141 gttgaccaaa ataacccaaa ccccaagcaa gtgcagatat aatgcttaca attcctactc
     7201 cttcgcccat agataaagct tgtggcttta tttctcttac tatattcatc gcttcaccaa
     7261 aaccacctaa atgataaagc ataaccaaag gtacaataat taaagccatc atcattaaaa
     7321 gcccttgtat catatccgtc caacaaaccg ccttatatcc acctaaaaaa gtataagcaa
     7381 caataataat cgttccagta gttaaagcat aatcgtatct gataccaaaa gtactttcaa
     7441 aaagttttgc tccgcttaca agccctgatg aaacataaaa ggtaaaaaat atcaaaatta
     7501 ccaccgcaca tacaatgcgc agtatatgtt tatcatcatc aaaacgagtt tcaaaataat
     7561 caggaatagt caaagaattt gcaatcacac tggtataaat tctaagtctt tttgccacaa
     7621 aaatccaatt taaactagct cctatagtaa gcccaattgc aatataagaa tctataaaac
     7681 cacttacata taaagctcct ggtaaaccca ttaaaagcca accactcata tcagaagccc
     7741 ctgcgctaag tgcagatatc acaggcccca tagtacgccc acctagaaaa taatcctctg
     7801 aatttttatt ttgcttataa aaataaaaac ctatataaag cattaataag gcatacacta
     7861 caaacatcac tgctattggg gtattaattt gaaccacttc catcaatctc tccttgatca
     7921 ttaagatatt gctctaatgc ctaaatttcc ataacgatga aaagatatac ttaaagcttt
     7981 ttcattaaaa taatttaaaa gttcaaaacg accatttaat aatggctttt ctcttataat
     8041 gattttagca agctttgcag cctctttata aatctcatca tttacatctg gctttgctaa
     8101 ataacgcact ctttcatatt ctttaatact cttgataaaa ttttctttat tttcttttaa
     8161 aaacaatact tttgctccta tgctttgaac aattcgttct atcatactaa catcttgttc
     8221 atcataactg atacttagat caatatttgc aatatttgca cctaaaacca cacctaaaac
     8281 atcttttaag ctttcatttc cacaaagtct taaaaccata ttctttattt tagtataaga
     8341 aaaaagatta tcttctccac gaatattgac ataatctttt gaaacactaa actcgttttt
     8401 ataatgataa gcataagatt gagacatttt aattaaattg tttataaaat cttgtgcttc
     8461 ttttaaatct atttgtgcta atttttttga aaatttatct tcaattaaat gatcatcaaa
     8521 atcttcttgc ttaatctcta aaaattgagt gatataatta taaattccca cttttctacc
     8581 caaacctata gctgattttt taatcccacc aaaaggttga cgcagcacta tagcccctgt
     8641 ggttggttta ttgatataaa tatttcctgc ttctatgtga gtgtgaaaat actcccattc
     8701 tctttcatct aagctttcaa aacctgcagt taaaccataa cctgtggaat ttactatatc
     8761 aatagcttct tttaagtctt tagccttcat cacacttaaa atcggtacaa aaagttcatt
     8821 catatgagta aaatcaccct ttttagtgcc atattttatg cctggagtca tcaaataagg
     8881 attatcctct aaaaacttag gttttaatgc ccattcttca taaggttgta attcatctaa
     8941 ggccttttga actttagaac ttggcttatc agctaaagta cctaatttat ttttaaattc
     9001 aaaaggattg cccactgcca tagaactcgc agcatccact aaagtctttt taaattcttc
     9061 atcatgataa acctcttctt ctaagactag caaagaagta gctgaacatt tttgaccgct
     9121 attgctaaaa gcagaatgaa tgatattttt aatcgcacta tcacgatcag caaatttaga
     9181 aactatagtc gcattctttc cgccagtttc agcacttaaa agcaaggttg gattagcttt
     9241 taacatggca taagcagtat cctctcctcc tgtaagaatt gaaaatttaa tcgcttcatc
     9301 aataagtaaa tatttagaaa tatcacttcc ttttgaaggt aagaaaatca aagcatcttt
     9361 tggaataccc gaatcccaaa aacacttaca aagcatataa cctgttagag ttgaaagtga
     9421 agaaggtttg taaatcacca cattacctgc ggctagtggt gcagctatag tacctactga
     9481 aattcctata ggaaaattcc aaggagctat ggtaacccct atacctttag gtgtgaatgt
     9541 aacttttgga ttttgttttt taagctcttc taaagagtgc ggataaaact ctataaaatc
     9601 aatagcctcg cttacttcag gatcgatctc taaaaaggtt ttgcccactt ctaaagctgc
     9661 caaacctatc aaatcccctc ttctttctct catcagtttt gcacttttgg ctaaaatttg
     9721 ataaatttca tcatgacttt tttgtgtaaa tttggaattt ttagctactt ctaaagcttg
     9781 tttgatttct ttttctcctg ctaaataagc ctttcctata actctatctt cgatcttatc
     9841 tttaacttct aaaacattta aattttctgc tttaaaatca agttcgccta taacaggata
     9901 aacatcataa tcttttaaat tttcatattt agttttaatt tctttagccc acactctatt
     9961 ttgtgctaaa ataaaatccg tatcgctttc attgctaaat tttttacctt cataagaact
    10021 tatgatattt gattctttat ttctatcttg cttacgatgt gtagtattat caagagtttt
    10081 tatgccttct aaagatttta aaaaaagttc tttttggata ttccagttct tatctcctac
    10141 tttaagattg aaaaaataac gcataaaatt atcttcactt gtattttcat caaggcgtct
    10201 tacaagataa gcaatggcat tgttaaaatg tgcttcatcg caaactgggg cataaaggat
    10261 tagatcatgc attttagata attcataaga acattgcaaa ctcatacctt caagcatttc
    10321 aaaagtaaaa gaatccaaag cacccacttc acttatgcgt gtataagcat aagcaatctc
    10381 aaagatatta tgacttgcaa ttcctatgtt gatgtattta taattatctc cttcaagaat
    10441 aaaatcaagc attttattat aattactatc agtatctatt tttttgtaaa aagtaggaag
    10501 ctcccaaccc ctttgagacg caatggtttc ttcactttcc atattagcac ccttaacaaa
    10561 acggatctta ataggcttca taccttttaa aaccctctct tttgaaaaag caaaaagttt
    10621 tttaagatac ttataagaat caggaatata agcttgcaaa acaatccctg ctttaatatc
    10681 aaatttagcc acactttcca taaaagctgc aacggtgagc tctaaatccc taaattcttc
    10741 catatcaaga ttgataaatt tagatacacc ttgttttttc tcttcttcta aggctaaagc
    10801 ataaagataa tctagtcttt ttacgacctc ttctttagaa taattaaaat ctataatatt
    10861 aatttgtgaa aaaatagtag taatttttat ggaaatataa gtgatatagc ttgattttaa
    10921 ggcttcttcg tatttttgca tacgatattt actctcagct tcacctaaaa cctcttcgcc
    10981 gattaaattc acatttaagg taattttatc ttgctctttt cttttcttaa tatgtggttc
    11041 taaaacacta ggatttgcat ctagaaccat agctttagta tcttctctta aatgtttgac
    11101 aaaaaaaggt acacttaaat taggagcaaa tttgccaaaa tttaaaaagc taaaaagtag
    11161 gaatttttca aaagtgctaa aaaaatccgc tatgccatat ttactcaaag tatattctat
    11221 aagctcaaaa cttgcatttt tatctttaca tctaaaagaa cgatctaaaa gctctataag
    11281 cataacttta tttttgggat tattaagaag tttttgcatt ttagcatgaa attctttttc
    11341 agaatttgaa atattggctt ctatttgtcc ttgtaattct tcagctaagg ctaaagcttt
    11401 ttgtatcat
//
LOCUS       DAPIWQ010000044        11374 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.044, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000044 DAPIWQ010000000
VERSION     DAPIWQ010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11374
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.044"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..1402
                     /locus_tag="RJ267_000826"
     CDS             <1..1402
                     /locus_tag="RJ267_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HDV7388695.1"
                     /translation="EKITPIANKILKELNSIKNDFFKALNKPENLMIKDPNILKQTAT
                     AFEKLENTLKNILGNQASKIQDKENILENLLSNKENIKEEKLNHNTKNQDEEKHIKAS
                     KEDENLDSGIKTHEEDTQDTKNDIQNNETENKPDNDIKNSTPNQEKIKDEKQEKSKEN
                     IKENPKFYETKTENKTSINTNTNTSNPNTNNTQNLNNTQNIQSNNNQTMQNIFKNQEF
                     IKQNIVKNLAFNVENLDLEQVQDLSKNLSNLSRRLNESLKELEPYTQNAKLNQAELKN
                     LEHKLNLSIKDLAQIKPKTEQDIAESLHHDVKSTLLQISNLAKNEGNEAVYNQANRLL
                     AQIEINQLMSLANDSINTYLPFSWDDLNDSKIMFRRGKKDKFFAQIKLEFAKLGDLEI
                     LISLNNEKYIDINIMAENIEFRKTIYENAHELKRNINKAGLLSANFFVGDIIRSKFDT
                     RNMKNLDLEMGMDKKV"
     gene            1399..1680
                     /locus_tag="RJ267_000827"
     CDS             1399..1680
                     /locus_tag="RJ267_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HDV7388696.1"
                     /translation="MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(1677..2477)
                     /locus_tag="RJ267_000828"
     CDS             complement(1677..2477)
                     /locus_tag="RJ267_000828"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDV7388697.1"
                     /translation="MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNINMSEFKA
                     PCEYESLNALFTRTLQIPRKFEEGFISPSDGKILECGSTFLANEEHFAFSIKGHAYSV
                     EELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHL
                     ECISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTRK
                     YENLNFKKGEELGNFELGSTIVLISQKGLLTFNLKVGQGIKFGEKIAD"
     gene            complement(2474..3598)
                     /locus_tag="RJ267_000829"
     CDS             complement(2474..3598)
                     /locus_tag="RJ267_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDV7388698.1"
                     /translation="MIFLIFSFIVLLIFGLANVYIYKRLIKKITLFKYFYKIFSFIFI
                     VLFLAQAVFLIFRRDEYLSDTWYEILAMFYAPTYCLFFMTLAWDFVKLILALMGKRDK
                     TYNLILRLIFELSLIVLSVFLIYASINNALKTPEVKSVDVEIPNLKQDLKIAMLTDIH
                     LGKNLHENFLDKLITKVNLQSPDMVVIVGDLIDTNPKDLKNYISKLNDFNSTYGTFYA
                     LGNHEYYHGINEVLDLLRKHTNMKILVNQNLDLGFINIAGLGDLAGLDRGLYAPDLAR
                     IKVDLNTSKASILLTHQPKTALLYDLSDFDLVLSGHTHGGQIFPFMFLVKLQQGFVYG
                     LYDLGEKTKLYVSSGAGFWGPSLRVFAPSEIVILNLKGKK"
     gene            3684..4979
                     /locus_tag="RJ267_000830"
     CDS             3684..4979
                     /locus_tag="RJ267_000830"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDV7388699.1"
                     /translation="MYRFAPSPTGDMHIGNLRAAIFNYICARQKNMDFILRIEDTDKA
                     RNIAGKEEEIKEILNLFSISWQHYYIQSENLKFHRQMALKLVSEKKAFACFCTEEELE
                     AKKELAKKQGKAYRYDGTCEKLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVTCIIRGEDHVSNTPKQEHIRASLGYNK
                     AMTYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLVILGNKTPCEIFTL
                     EEAIKWFDISKVSKAPARFDLKKLLQINREHIKMIKDDELNKILDLNKDLAQLAKFYT
                     QETSTIKELKEKMQAIFNAKDFGEFETECKILKELLKDIELFENYEDFKNELLNKSNL
                     KGKKFFMPLRIILTGNIHGPELSDLYPYIKNFIHELARI"
     gene            4982..5263
                     /locus_tag="RJ267_000831"
     CDS             4982..5263
                     /locus_tag="RJ267_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HDV7388700.1"
                     /translation="MVIDSFIISIFQVLQIVINIYTWIIIITALLSWVNPDPYNPIVQ
                     ILYKLSYPAYALVRKIPTRIGNIDLAPLIIVLALQFLGIFLGNILRSIL"
     gene            5260..6885
                     /locus_tag="RJ267_000832"
     CDS             5260..6885
                     /locus_tag="RJ267_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HDV7388701.1"
                     /translation="MIKKILVFLFIFSSLNATQYSIEKLKKEENSLAKDYYIYRLLEK
                     NKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYIANTILDANLTC
                     QSVRLNSLVFIASLNSKDRTTLAQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGF
                     FKLYNYSKKYDLDLNTSLVNKLPNHIGFKDFAQNIIIKKENPKFRYSMLEINPENVSE
                     DSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKNNEEDLKTLSQ
                     SSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQLD
                     VLAKEFDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQESR
                     FIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFKPEIAYYFGNYHLNYLE
                     SRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQESRIYGKKVLA
                     NYIVYRHLLNDSIKISDIFENLIQNKANDLNKS"
     gene            complement(6782..7267)
                     /locus_tag="RJ267_000833"
     CDS             complement(6782..7267)
                     /locus_tag="RJ267_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388702.1"
                     /translation="MKIYSVILGAFLLGACSLKDQAIVDTNLKSQTLMFTQKYKITQD
                     KINAIITMSYLNPILDKTSKDDVLALSFTPNTLKIQNLEVFINNKKANIEKLDDEYLK
                     YIIQNNYTDYFKVSLPSVKEEIRLVAKICLDHLPCFELNFQKYPKSLYYRSEDVDTQY
                     N"
     gene            7363..7854
                     /gene="mobB"
                     /locus_tag="RJ267_000834"
     CDS             7363..7854
                     /gene="mobB"
                     /locus_tag="RJ267_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HDV7388703.1"
                     /translation="MKQLIIAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLSPDFDICLVEGLKT
                     LDLPRISVFCKEIDESYFIFSNAIASYEKISHPYLTWLDLNDIQAICQYILKNAKNLQ
                     GEL"
     gene            7856..8698
                     /locus_tag="RJ267_000835"
     CDS             7856..8698
                     /locus_tag="RJ267_000835"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HDV7388704.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTSYSQNQNFTGDTQLKFDVLS
                     DEIITKTLSQCSSIKAIISEEKDEILTLNERANFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLRAALYSMYGARLELVICKDQPKLYRLNANNEFIFIKDLRMNEKGKIN
                     ATGGTQKFWEEKHAKFIKSLFDEGYRLRYSGAMVSDINQILLKRGGIFSYPATQDAPN
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNRSLLELEFDKIHATTPCFFGSEYEISKLLK
                     AYNE"
     gene            8691..8888
                     /locus_tag="RJ267_000836"
     CDS             8691..8888
                     /locus_tag="RJ267_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388705.1"
                     /translation="MNEVRDEFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQTRK
                     NYVDAVYNSMSKGKTEGGFDF"
     gene            8898..10784
                     /gene="metG"
                     /locus_tag="RJ267_000837"
     CDS             8898..10784
                     /gene="metG"
                     /locus_tag="RJ267_000837"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HDV7388706.1"
                     /translation="MRYITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLT
                     GTDEHGQKIEEAAKLRNSTPQEYADKISFEFKKLWDEFEITYDIYARTTDTRHIEFIK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFTQSQLINDCSCPDCGKQTRILKEESYFFK
                     LSKYQDKILQWYEEKDPILPKNKKNELINFVQNGLKDLSITRTSFDWGIKLPQEINDD
                     KHIIYVWLDALFIYVSSLDFQNKGENAKFWPAHVHLVGKDILRFHAIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDAYGSEAFRYFLLREVPFGNDGDFS
                     ENMLINRINAELSNEFGNLLNRIIGMSTKYSQGNISKEGVLKFYNAELNQAKEHLNLA
                     VEFLENLQCNRYLEELFKALSVANLAISKYEPWSLIKENKHEQANALVALCANILAKT
                     SLLLSPTLPKSSQKVALALNFEISSANYTKMILDNELLDFKANPCEALFPKVEKALLK
                     QEIKEEPKKEESPKIKIDDFAKIEIKVAKVLDCQNIEGSEKLLKFQLELDDKEIRQVL
                     SGIAKYYKASDLIGKQVCVISNLKKAKIFGHESDGMILSAKSGDKLVLIAPEQLVQNG
                     SLVG"
     gene            10788..>11374
                     /locus_tag="RJ267_000838"
     CDS             10788..>11374
                     /locus_tag="RJ267_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388707.1"
                     /translation="MQISNLGELLNATLIHEGSVLSVEGFAINLNELKTGFAFFNNDK
                     KEIAQAVKKGAYAIITENDITIEDKEIFYFRVENLERALVRFLRFFCEDKECEFLLFK
                     SYELSLCKAFYFNILKGNIFADFEKLIKAKKGEIFCYCEENYLNKLCTYSHSLKDANF
                     TLLSRSSFFFTTLICENLYFKNLNLPFFYANSFAK"
BASE COUNT         4416 a         1704 c         1593 g         3661 t
ORIGIN      
        1 agaaaaaatc acccctatag ctaataaaat tttaaaagaa ttaaattcca tcaaaaatga
       61 ttttttcaaa gctcttaata agccagaaaa tttaatgata aaagatccaa acatccttaa
      121 gcaaactgct accgcctttg aaaaacttga aaatacttta aaaaatatac taggcaatca
      181 agcttctaaa atacaagata aagaaaatat tttagaaaat cttttaagta acaaagaaaa
      241 tatcaaggaa gaaaaactta atcataatac aaaaaaccaa gatgaagaaa aacatataaa
      301 agcatcaaaa gaagatgaaa atttagattc tggtataaaa acccatgaag aagataccca
      361 agatacaaaa aatgatattc aaaataatga aacagaaaat aagccagaca atgatataaa
      421 aaattctact ccaaaccaag aaaaaattaa agatgaaaaa caagaaaaat caaaagaaaa
      481 tatcaaagaa aatccaaaat tttatgaaac aaaaacagaa aacaaaactt caatcaatac
      541 aaataccaac acttcaaatc ctaacacaaa caatacgcaa aatttaaata atactcaaaa
      601 tattcaatct aacaataacc aaactatgca aaatattttt aaaaatcagg aatttataaa
      661 acaaaatatt gtaaaaaatt tagcatttaa tgtagaaaat ttagatctag aacaagtgca
      721 agatttaagt aaaaatttaa gcaatctttc tcgtagactt aatgaaagct taaaagaact
      781 tgaaccctat actcaaaatg ccaagcttaa tcaagcagaa cttaaaaatc tcgaacacaa
      841 actcaatctt tctatcaaag atctagcgca aattaaacca aaaacagaac aagatatagc
      901 tgaatcttta catcatgatg taaaatcaac acttttgcaa atttcaaatt tagctaaaaa
      961 tgaaggcaat gaagctgtat acaatcaagc taatcgtctt ttagcgcaaa ttgaaatcaa
     1021 tcagcttatg tctttagcta atgattctat caatacttat ctgccttttt cttgggatga
     1081 tttaaatgat tctaaaatta tgtttagacg cggaaaaaag gacaaatttt ttgctcagat
     1141 taaactcgaa tttgcaaaac ttggggattt agaaattctt atttctttaa ataatgaaaa
     1201 atatatagat attaatatta tggcagaaaa tattgaattt agaaaaacca tctatgaaaa
     1261 tgcccatgag cttaaaagaa atatcaataa agcaggactt ttaagtgcaa atttctttgt
     1321 aggtgatatc ataagaagta aatttgatac tagaaatatg aaaaatttag atcttgaaat
     1381 gggtatggat aaaaaagtat gagcaaaatc aaaagatcga ttaaaaaagc tgtagctcta
     1441 ggctatcaaa aagaaaaaaa ctctgcacca aaagtgcttg caagtggcaa aggagaaagt
     1501 gctgctaaaa ttatttcttt agccaaggaa cacggagttc ctattaaaga agatgaagat
     1561 ttaatagaaa ttttaagcaa gcttgactta ggtgatgaaa ttccacctaa tatgtataaa
     1621 gctgtagctg aagtttttgc ctttatctat caaatggcaa ataaaactcc taaaaactaa
     1681 tccgctattt tttctccaaa tttaataccc tgccctactt ttaaattaaa agttaaaagt
     1741 cctttttgag agattaaaac tatagtagaa cctagctcaa aatttcctag ttcttcgcct
     1801 tttttgaaat ttaaattttc atattttcta gtaaaattat gagaaatttt agcattggtt
     1861 tgtatgcttg catcaaaatt aaaacgcatt tttcctacat tttgcgctcc tacaaaaaca
     1921 agccaaaaaa tacctttttc attttgacat ttcaagctca ctctttcatt ttttacatat
     1981 aaattactaa tgcattctaa atgtttttca tttacgctat aaagcactcc acttgtgtaa
     2041 gttgcactta aaatttgcat atcacaaggg ctgtgataac gatgataatc ttttggagaa
     2101 agataaatat tgacataatc aagcccattt ttaagttcat ctttttcaaa gctatctttt
     2161 aaaagctcct caacgctata agcatgtcct tttatagaaa aagcaaaatg ttcttcattt
     2221 gctaaaaaag tacttccaca ctctaaaatt ttaccatcac ttggactgat aaaaccttct
     2281 tcaaattttc ttggaatttg taaagttctt gtaaaaagag catttaaact ctcatattca
     2341 caaggagctt taaattcact catattgata ttaaaatact taacataatt ttcattaata
     2401 actttttgta tcattttagg aaatttaatc cccgctacaa aaccaaaaag tctcgaactt
     2461 tcttttgaaa aactcatttt tttcctttta aatttaaaat cactatttca ctcggagcaa
     2521 aaactctaag acttggcccc caaaatcctg ctccactact cacataaagc ttagtttttt
     2581 ctcctaaatc ataaagccca taaacaaaac cttgctgaag tttaactaaa aacataaaag
     2641 ggaaaatttg ccctccatgt gtatgcccac ttaaaacaag atcaaaatca cttaaatcat
     2701 aaagcaaagc tgttttaggt tgatgtgtga gtaaaatact agctttgctt gtatttaaat
     2761 ccacttttat tcttgctaaa tcaggagcat ataaacccct atcaagtccg gctaaatctc
     2821 caagtccagc aatatttata aaacccaaat ctaaattttg attgactaaa attttcatat
     2881 tagtatgttt tctaagtaaa tccaaaactt cattgatacc atgataatac tcatgatttc
     2941 ccaaagcata aaaagttccg taagtggagt taaaatcatt aagttttgag atgtaatttt
     3001 ttaaatcttt aggattagta tcaatcagat cccctactat tacaaccata tcaggacttt
     3061 gcaaattcac tttagtgatg agcttgtcta aaaaattttc atgcaaattt ttacccaaat
     3121 gtatatcagt aagcatggca atttttaaat cttgtttaag atttggtatt tcaacatcaa
     3181 cactctttac ttcaggtgtt tttagagcat tatttatact tgcataaatt aaaaacacac
     3241 ttaaaactat aagagaaagt tcaaaaatca aacgcaaaat aagattatat gttttatctc
     3301 ttttacccat aagagctaaa atcaatttaa caaaatccca agctaaagtc ataaaaaaca
     3361 aacaataagt cggcgcataa aacatggcta aaatttcata ccaagtatca cttaaatatt
     3421 catctctacg aaatattaaa aacacagctt gagctaaaaa aagcacaata aaaataaagg
     3481 aaaaaatttt ataaaaatac ttaaaaagag taattttctt gattaatctt ttataaatat
     3541 aaacatttgc taagccaaaa atcaataaca caatgaaaga aaaaattaaa aatatcataa
     3601 aagtattata accaagtaaa attaaatatc cgtataaatt tttctgttat aataagcttt
     3661 taaataattt taaaggctat aagatgtacc gttttgcacc ttctcccaca ggtgatatgc
     3721 acataggaaa tttacgcgca gcaattttta attatatctg tgcaagacaa aaaaatatgg
     3781 attttatctt acgtattgaa gatactgata aggctagaaa tatagcagga aaagaagaag
     3841 aaatcaaaga aattttaaat ctttttagta tttcatggca gcattactat atacaaagtg
     3901 aaaatttaaa attccatcgc caaatggctt taaaacttgt aagcgaaaaa aaagcttttg
     3961 cttgtttttg caccgaagaa gaacttgaag caaaaaaaga gctggctaaa aaacaaggta
     4021 aagcttatcg ctacgatggc acttgtgaaa aactagccga tattgatgtt ttagaatgtg
     4081 aaaaaccctt tgttatccgt cttaaaaaac ctactcatac tatgaaattt actgatttta
     4141 tcaaaggcga gcttagtttt gagcctgaaa acatagactc ttttgtgatt atgagaacgg
     4201 ataaaactcc aacttataat tttgcttgtg cggttgatga tatgcttgaa aatgtcactt
     4261 gtattatacg cggagaagat catgtttcaa acactccaaa acaagaacat atccgcgcaa
     4321 gcttaggtta taataaagcc atgacttatg cacacttgcc tatcatttta aacgaagaag
     4381 gtgttaaaat gagtaaaaga gaagcacatt cttctgtaaa atggctactt gaaagtggaa
     4441 ttttacctag cgcaatcgcg aattatcttg tcatactagg caataaaact ccttgtgaaa
     4501 tttttacctt agaagaggct ataaaatggt ttgatatttc taaagtttca aaagctcccg
     4561 caagatttga tcttaaaaaa ctcttacaaa tcaatcgtga acatatcaaa atgatcaaag
     4621 atgatgagct taataaaatt ttagatttaa acaaagatct tgcacaactt gctaaatttt
     4681 atactcaaga aacaagtact ataaaagaac ttaaagaaaa aatgcaagct atttttaacg
     4741 caaaagattt tggcgagttt gaaacagaat gtaaaatttt aaaagaactc ttaaaagata
     4801 ttgaactttt tgaaaattat gaagatttta aaaatgaact tttaaataaa agcaacttaa
     4861 aaggtaaaaa atttttcatg cctttaagga taattttaac aggaaatatc cacggacctg
     4921 agcttagtga tctttatcct tatattaaaa attttattca cgaattagca aggatttaac
     4981 tatggttata gactctttta ttatttctat ttttcaagta cttcaaattg tcattaacat
     5041 ttatacttgg attattatca tcacagcact tttaagctgg gtaaaccctg atccttataa
     5101 tcccatagtg caaattttat ataaactaag ctaccctgct tacgccttag ttagaaaaat
     5161 tccaacacgc attggtaata ttgatcttgc gcctttgatt atagtcttag cattgcagtt
     5221 tcttggcatt tttcttggga atatcttaag gagtatattg tgataaaaaa aatactcgtt
     5281 tttttattta ttttttcaag tttaaatgct acacaatata gtatagaaaa actcaaaaag
     5341 gaagaaaatt cacttgctaa ggattattat atttataggc ttttagaaaa aaataaaatc
     5401 agtaaaaaag atgcacagga tttaaattct catatttttc gctatatagg aaaaattaaa
     5461 tctgaacttg aaaaaatcat ccctttaaag ccttatatca acccaaaata tgctaaatgc
     5521 tatacctata tagcaaatac tatcttagat gcaaatttaa cttgtcaaag tgtgcgctta
     5581 aattcattag tttttatagc gagtctaaat tccaaagacc gaactacttt agctcaaacc
     5641 tttaaaaatc aaagacctga tttgacaaat ttattgctag cttttaatac ttctgatcct
     5701 atgagctata tagtacaaaa agaagatatt aatggttttt ttaaacttta taattattct
     5761 aaaaaatacg acttagattt aaatacaagt ttagtcaata aactaccaaa ccacattggt
     5821 tttaaagatt ttgcacaaaa tattattatt aaaaaagaaa atccaaaatt tagatattct
     5881 atgctagaaa taaatcctga aaatgtaagt gaagattctg ctttctattt aggagtcaat
     5941 gccttaactt atgataaaac agagcttgct tatgactttt ttaaaaaggc ggcacaaagt
     6001 tttaaatcgc aaagtaataa agacaatgct atattttgga tgtggttgat taaaaacaat
     6061 gaagaagatt taaaaacttt atcgcaaagt tcttctttaa atatttatag tctttacgca
     6121 aaagaactta ccaacacacc ttttccaaag atagaaagcc ttaatccaag caagaaaaaa
     6181 aataatttta atatgcaaga tccttttgct tggcaaaaaa taaacaaaca aattcgcgat
     6241 gctaacgcaa gtcaactaga tgtcttggca aaagaatttg acacacaaga aaccttgcct
     6301 atttatgctt acatattaga acgcaaaaat aattttaaaa aacattattt tataatgcct
     6361 tattatgata atataaaaga ctataacaaa acaagacaag ctttaatttt ggctattgcc
     6421 agacaagaaa gtcgttttat tccaactgct atttcagttt cttatgcttt aggcatgatg
     6481 caatttatgc catttttagc caatcacata ggggaaaaag aattaaaaat tccaaatttc
     6541 gatcaagatt ttatgtttaa acctgaaata gcatattact ttggaaacta tcatctaaat
     6601 taccttgaat cacgtttaaa atctccactt tttgtcgctt atgcttataa tggcggtata
     6661 ggatttacta accgtatgct tgcaagaaat gatatgttta agacaggcaa atttgaacct
     6721 ttcttgtcta tggagctagt tccttatcaa gaaagccgaa tttacggaaa aaaagttcta
     6781 gctaattata ttgtgtatcg acatcttctg aacgatagta taaagatttc ggatattttt
     6841 gaaaatttaa ttcaaaacaa ggcaaatgat ctaaacaaat cttagctaca agcctaatct
     6901 cttccttgac actaggaaga gatactttaa aataatcagt atagttgttt tgtattatat
     6961 attttaaata ctcatcatcc aatttttcaa tattggcttt tttattattg ataaaaactt
     7021 ctaaattttg aatttttaat gtatttggag taaaagataa agctaataca tcatctttac
     7081 ttgtcttgtc tagaattggg tttaaataag acatagttat aatggcatta atcttatctt
     7141 gtgtgatttt gtatttttga gtaaacatta aagtttgaga ttttaaattt gtatccacaa
     7201 tcgcctgatc ttttaaagaa caagctccaa gcaaaaaagc acctaaaatt acactataaa
     7261 ttttcattct ttttccatat tttttagtat tattgtagcc ttttaaccct attttttggt
     7321 ttaaaaagat ataattttgc aaaaaaatta agagtatatt ttatgaaaca acttattata
     7381 gcttttagcg ggccttcaaa ttcaggaaaa actacactca tcactaaaat agctgataat
     7441 tttttgcaac aaaatttaaa agttttaatc attaaacatg accctgccga taaagctcaa
     7501 tttgatttta acggtaaaga tagttttaaa ttttttcaaa gtggagctga agtcatggtt
     7561 ttaagcccta caagaacaac ttttttttct catgaaaata gagatatttt aaaagcttta
     7621 aaattaagcc ctgattttga catttgtttg gttgaaggat taaaaactct tgatttacca
     7681 cgcattagcg tattttgcaa agaaattgat gaaagttatt ttattttttc aaacgccatt
     7741 gcaagctatg aaaaaatttc tcacccttat cttacttggc ttgatttaaa cgatatacaa
     7801 gctatttgcc aatacatact taaaaatgct aaaaatttac aaggagaatt ataaaatgca
     7861 agaagtgatt tcttatatac aaaaagcggt tttagaaatt tctaacgctt taaaatttcc
     7921 cgatacaagc tacagtcaaa atcaaaattt tacaggcgat acccaactca aatttgatgt
     7981 tttaagtgat gaaattatca caaaaaccct aagtcaatgt tcaagtatta aagccatcat
     8041 cagtgaagaa aaagatgaaa ttttaacgct taacgagagg gcaaatttta tcgtagctta
     8101 tgatccttta gacggttcta gcttaatgga tgttaatttt gccataggtt ctatttttgc
     8161 tatctatgaa gaaaaagcaa gtgctaaaaa tttaagagct gcgctttata gtatgtatgg
     8221 agcgcgatta gaacttgtga tttgcaaaga tcagccaaaa ctttatcgct taaatgcaaa
     8281 taatgaattt atttttataa aagatcttag aatgaatgaa aaaggcaaga ttaatgctac
     8341 aggcggaacg caaaaatttt gggaagaaaa acacgctaaa tttatcaaaa gtctttttga
     8401 tgaaggctat cgcttaagat attctggagc catggtaagc gatatcaatc aaattttatt
     8461 aaaaaggggt ggcattttta gctatcctgc aacacaagat gcgcctaatg gcaaacttcg
     8521 tgcctttttt gaagtctttc ctctagcctt tatcatagaa aaagcaggcg gaaaaactac
     8581 aaatggaaaa aaccgctctt tacttgaact tgaatttgat aaaatccatg cgacaactcc
     8641 ttgttttttt ggctcagaat atgaaatttc aaaactttta aaggcttaca atgaatgaag
     8701 ttagagatga atttgagcaa gatatggata aaaaaaaaga aattttactt tcatgtcaaa
     8761 actcaaaaaa cctaaactct tgttataatt gcgatgaaat ttttaactgc caaactagaa
     8821 aaaattatgt tgatgcagtc tataacagta tgtctaaggg taaaaccgaa ggcggatttg
     8881 acttttaaag gaaaaaaatg cgttatatta caacaccaat ttattatgta aatgatgtac
     8941 ctcatttagg tcatgcttat actaccatca tagccgatac tttagcaaga ttttatcgtt
     9001 tgcaaggaca tgaaacaaga tttctaacag gaacagatga gcatggacaa aaaatcgaag
     9061 aagctgccaa actaagaaat tccactcctc aagaatacgc tgataaaatc agttttgaat
     9121 ttaaaaaatt atgggatgaa tttgaaatca cctatgatat ttacgcaaga acaactgata
     9181 caaggcatat tgaatttatt aaagctatgt ttttaaaaat gtggcaaaaa ggtgatattt
     9241 ataaagatga atacgaagga cactattgta tttcttgtga aagctttttt actcaaagtc
     9301 agcttattaa cgattgttct tgcccagatt gtggcaaaca aactagaatt ttaaaagaag
     9361 aaagctattt tttcaaactt tcaaaatatc aagataaaat tttacaatgg tatgaagaaa
     9421 aagatcccat cttgccaaaa aacaaaaaaa acgaacttat aaattttgtc caaaacggcc
     9481 ttaaagatct ttccattaca agaacaagtt ttgattgggg gattaaactg cctcaagaaa
     9541 ttaatgatga taaacatatt atttatgtat ggcttgatgc actttttatc tatgtaagct
     9601 cacttgactt tcaaaacaag ggagaaaatg ctaaattttg gcctgcgcat gtgcatttag
     9661 taggaaaaga tatcttgcgt tttcatgcca tttattggcc agctttttta atgagcgtgg
     9721 atttgccttt gccaaaattt ataggtgcac atggctggtg gactaaagaa ggtgaaaaaa
     9781 tgagcaaatc taaaggcaat gttgtaaaac ctaaagaagt agttgatgcc tatggaagtg
     9841 aagcttttag atatttcttg cttagagaag tgccttttgg taacgatggg gattttagcg
     9901 aaaatatgct gataaatcgt atcaatgcag agcttagcaa tgaatttgga aatttactta
     9961 atcgcattat aggtatgagt acaaaatatt ctcaaggaaa tatttcaaaa gaaggtgttt
    10021 taaaatttta caatgccgaa ctaaatcaag caaaagaaca cttaaattta gcggtagaat
    10081 ttttagaaaa cttacagtgt aatcgttatt tagaagaact ttttaaagcc ttaagtgtgg
    10141 caaatttagc cattagtaaa tacgaacctt ggagtttaat caaagaaaac aaacacgaac
    10201 aagctaatgc tttagtagca ctttgtgcaa atattttagc caaaacaagc cttttattaa
    10261 gccctactct accaaagtcc tctcaaaagg tggccttagc tttaaatttt gaaatttcgt
    10321 ctgcaaatta cacaaaaatg atacttgata atgaactttt agattttaaa gcaaatcctt
    10381 gcgaagcttt atttccaaaa gtagaaaaag ctcttttaaa acaagaaatt aaagaagaac
    10441 ctaaaaaaga agaaagtcct aaaataaaaa tcgatgattt tgcaaaaatt gaaatcaaag
    10501 ttgctaaggt acttgattgt caaaatatag aagggagtga aaaactttta aaatttcaac
    10561 tcgaacttga cgataaagaa atccgtcaag tactctcagg catagcaaaa tactataagg
    10621 ccagtgattt aatcggtaaa caagtttgcg ttataagcaa tcttaaaaaa gctaaaattt
    10681 ttggacatga aagcgatggt atgatacttt ctgcaaaaag cggagataaa cttgttttaa
    10741 tcgcccctga acaacttgtg caaaacggct ctttagtggg ttaaaatatg caaattagca
    10801 atttaggcga actgttaaac gcaacactaa ttcatgaagg tagtgtttta agcgtggaag
    10861 gttttgccat aaatttaaac gaacttaaaa caggctttgc cttctttaat aacgataaaa
    10921 aagaaattgc ccaagctgta aaaaaaggcg cttatgctat aattacagaa aatgacatta
    10981 ctattgaaga taaagaaatt ttttacttta gagtagaaaa tctagaacga gctcttgtaa
    11041 gatttttacg ctttttttgc gaagataaag aatgtgaatt tttacttttt aaatcttacg
    11101 aactaagtct ttgcaaggct ttttatttta acattttaaa aggaaatatt tttgctgatt
    11161 ttgaaaaact aatcaaagca aaaaagggtg aaattttttg ctactgtgaa gaaaattact
    11221 taaataaact ttgcacctat tctcatagtc taaaagatgc taattttacc ttattatcgc
    11281 gatctagctt cttttttaca actttgattt gtgaaaattt atattttaaa aatcttaatt
    11341 tgcctttttt ttacgcaaat agttttgcaa aaat
//
LOCUS       DAPIWQ010000045        11360 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.045, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000045 DAPIWQ010000000
VERSION     DAPIWQ010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11360)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11360)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11360
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.045"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            23..1015
                     /locus_tag="RJ267_000839"
     CDS             23..1015
                     /locus_tag="RJ267_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family oxygenase"
                     /protein_id="HDV7388708.1"
                     /translation="MNLPILDLQAYEKDKSTFLKNLREIASKIGFFYLINTSIDKNLN
                     EKLFKLGKEFFNLSRSSKELISMVHSPQFRGYTSEGFEYTAGSKDYREQLDIGTERDA
                     LNWNLNSPLWQRLEGPNLWPSEIPELKKTFLTWHKQTKKACLKLLKAFAQALDLPNNA
                     FDKLYGENSYEHCKIIHYPKSSKNITQGVGSHKDGGLITFVFQEKQSGFEAFIDGKWL
                     SIPPLENSVVVNIGEFLELATNGYLKATIHRVNLSPKERFSIAYFLGVQLDKDIPIFK
                     LNPELAKESKGVDTDPKNPLLRNVASNYFKRMIRSHPDVASIYHSDLIEKFSFA"
     gene            1026..1796
                     /locus_tag="RJ267_000840"
     CDS             1026..1796
                     /locus_tag="RJ267_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7388709.1"
                     /translation="MTLFTKAFCVATLFTGFAWANEELKVGSSITPHADILRFIKSAL
                     QKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKHKEFHPKEGQSISIPNNPTNESRALRIVASKGLIEVKDNELITPLDITKN
                     PKKLKFVELKDAQLTRSLDDVDYSLINSNFAILAGLNPVKDGLYTESKYSEYGNIIAV
                     KEGNENLPKIKALVKALQSNEVKKFIEEKYQGALIPTF"
     gene            1808..4072
                     /gene="metE"
                     /locus_tag="RJ267_000841"
     CDS             1808..4072
                     /gene="metE"
                     /locus_tag="RJ267_000841"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HDV7388710.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIR
                     HWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYKNLNLDALDEYFAQSRGYQG
                     ENGDVTALAMKKWFNTNYHYLVPECDNADIIALTGDKIFKEYLEAKELGIESKPVLIG
                     IFTLFKLIAFKDEKTQKLAKEKLLNAYIELFDKLNELKVTWLELDEPYLVYDLSKEDI
                     ALFEEFYQELLNHKKDLKILLQSYFGDLRDIYPKLLESKFDALGLDFIEGKQSLALVQ
                     QYGFAKDKILFAGLINGKNIYANDYAKSLKLIKELQKYTQNIILNTSCSLLHVPYSTE
                     FESKLDSSYLKLFAFAKEKLQELKDLKEILNSSEENPLFRANQELFKNIPERLDEKVK
                     ARLKALKKEDFTRTPSFKERALIQKEFLKLPLLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRTKPITLAWSKFAQSLSQKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKAKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLSLLDTLKAIRF
                     KTEVGPGVYDIHSPRVPSVEELSLTIEKILNKLPKEQIWINPDCGLKTRAYEEVIASL
                     KNLVTATQKIREQL"
     gene            4082..4930
                     /gene="metF"
                     /locus_tag="RJ267_000842"
     CDS             4082..4930
                     /gene="metF"
                     /locus_tag="RJ267_000842"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HDV7388711.1"
                     /translation="MCSFSFEVFPPRKDENIKNLHAILDDLGQLSPNFISVTFGAGGS
                     INSQNTLEVASLIQEEYQIPSIVHLPCIHSSKEKITQILQKCKEKNLNQILALRGDIC
                     ENLKKSKDFSYASDLISFIKKQEYFEIYAACYPEKHNESKNFIEDIHHLKTKVNAGTD
                     KLITQLFYDNEDFYTFKQNCALADIDIPIYAGIMPITNKRQVLKISQLCGAKIPPKFV
                     KILEKYENNTLALEDAGIAYACDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKHLL
                     KEELHA"
     gene            complement(4952..5143)
                     /locus_tag="RJ267_000843"
     CDS             complement(4952..5143)
                     /locus_tag="RJ267_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388712.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKYNSFFYLCLGIIPGLLLS
                     LIFVLLIENHKLKNENKLR"
     gene            complement(5140..5820)
                     /locus_tag="RJ267_000844"
     CDS             complement(5140..5820)
                     /locus_tag="RJ267_000844"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HDV7388713.1"
                     /translation="MKDLFLFSSLLDASHTFSYFFHIGLVALIAVIVAMMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGSEKGARKYLPLVATLGIIVFFSNIIGIIPGFHAP
                     TASLNLTLSLAIIVFVYYHFEGIRAQGFVKYFAHFMGPIKLLAPLMFPIEIVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATVVEEGH"
     gene            complement(5889..7229)
                     /gene="radA"
                     /locus_tag="RJ267_000845"
     CDS             complement(5889..7229)
                     /gene="radA"
                     /locus_tag="RJ267_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HDV7388714.1"
                     /translation="MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVL
                     KELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKQGKKVLYVSGEESKAQVKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKDYSILIVDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAK
                     DLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM"
     gene            complement(7229..8095)
                     /gene="ftsY"
                     /locus_tag="RJ267_000846"
     CDS             complement(7229..8095)
                     /gene="ftsY"
                     /locus_tag="RJ267_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HDV7388715.1"
                     /translation="MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEI
                     VEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQEKPFVELILGVNGAGKTTSIAK
                     LAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
                     AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGI
                     LQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNAS
                     AYLDTLLDPIFE"
     gene            complement(8095..8652)
                     /locus_tag="RJ267_000847"
     CDS             complement(8095..8652)
                     /locus_tag="RJ267_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HDV7388716.1"
                     /translation="MKIKKILLLVAISCLFVACSNDKEKQQNDVNLSTEASINQSDDM
                     NFKLNLIDGGSISVKKENAVLNFNDEDKVTLFVFFTTWCTPCIAEIPHLNKLQEKYNN
                     DFNIVGVLLEDKSNDEIQKFIEQHKISYKVANGENNYLLAKALGGVNGIPTMFLYNKH
                     SKLINQYLGLIPEEMLEIDIQKAIL"
     gene            8735..9361
                     /locus_tag="RJ267_000848"
     CDS             8735..9361
                     /locus_tag="RJ267_000848"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HDV7388717.1"
                     /translation="MEKTDFRALQKIRLFKHSKLNFKQDYKIFKECLKIIKLFKAKNI
                     LIFIPLHYEPNLIKFRHILNKNYKLFVPFMQDKSLKIVKLRLPFIKKRFGVLEPIDSF
                     FKAKIDLAIVPVIGVDKNLKRIGHGQGFYDRFFENLNYKPHIIFIQSIDALSQNNLTQ
                     KHDISGKLYINPYKKYYKKERKNDRITYRTYSRYSRTRYRIFSCKKNQ"
     gene            9282..10835
                     /gene="rny"
                     /locus_tag="RJ267_000849"
     CDS             9282..10835
                     /gene="rny"
                     /locus_tag="RJ267_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HDV7388718.1"
                     /translation="MIESLIALIAAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEEKTHKFQKDFNQKFDDLSKKEQKLQQEEEKL
                     KEDKEYLCKSQKHIQNLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAKEIILKKV
                     EENSREQIAHIVRKYEEEAKNEAKRKANFIIAQATSRFAGEFAAERLINVINIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDSAILEEGETIVMDLGLNKIHPEIVKLIGKLKYRASYGQNAL
                     AHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLGAELCKRYKE
                     HPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLKRVSELEDIAK
                     SKEGIKNAYAINAGREIRVIANAQLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIR
                     ELRAVEYAK"
     gene            10844..>11360
                     /locus_tag="RJ267_000850"
     CDS             10844..>11360
                     /locus_tag="RJ267_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDV7388719.1"
                     /translation="MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSF
                     CIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRRKIALAMIKTKQHGIILLVTQKF
                     IYGLKTFIPIAAGMAKYNFIKFFIINTLASLAWAIVLGFTAYTFGYVIEAIFDKLSLY
                     PYAAPLFLLFLA"
BASE COUNT         4185 a         1886 c         1725 g         3564 t
ORIGIN      
        1 aattttaatt taaggagcaa aaatgaactt acctatactt gatttacaag cttatgaaaa
       61 agataaaagc acttttctta aaaatttaag agaaattgct tctaaaatag gtttttttta
      121 tcttatcaat accagtatag ataaaaattt aaacgagaaa ttattcaaac ttggcaaaga
      181 attttttaat ctttctagaa gttcgaaaga gcttatttct atggtacatt ctcctcaatt
      241 tagaggttat actagcgaag gttttgaata cacagcagga tctaaggatt atagagaaca
      301 actggatata ggcacagaaa gagatgcttt aaactggaat ttaaactcac ccttatggca
      361 aagactagaa ggtcctaatc tttggcctag tgaaattcca gaacttaaaa aaactttctt
      421 aacttggcac aaacaaacca aaaaagcttg tttaaagctt ttaaaagcct tcgctcaagc
      481 tcttgatcta cctaacaatg cttttgataa actttatgga gaaaattctt acgaacattg
      541 taaaatcata cattatccaa aaagctcaaa aaatatcact caaggcgtag gttcacataa
      601 agatggtggg cttatcactt ttgtttttca agaaaaacaa agcggatttg aagcttttat
      661 agatggtaaa tggcttagta tacccccact tgaaaatagc gttgtagtta atataggaga
      721 atttttagaa ctagctacca atggctattt aaaagctact attcaccgcg tgaatttaag
      781 cccaaaagaa cgctttagca tagcttattt tcttggagtg cagcttgata aggatatacc
      841 tatttttaag ttaaatccag agcttgctaa agaaagtaaa ggtgtggata ctgatcctaa
      901 aaatccactt ttaagaaatg ttgcaagtaa ttattttaaa agaatgatac gctctcatcc
      961 tgatgtggca agtatttatc atagtgactt gatagaaaaa tttagttttg cgtaaaggag
     1021 aaaaaatgac tttatttact aaagcttttt gcgtcgctac tctttttacc ggttttgcat
     1081 gggcaaatga agaacttaaa gttggctctt ctataacacc tcatgcagat attttaagat
     1141 ttataaaatc agcacttcaa aaacaaggtt atgatttaaa aatttatgaa ttcaatgatg
     1201 gagtaatccc taatgtaatg gttgaaaatg gtgagttaga tgctaattat tttcagcatg
     1261 agccttattt aaaagaattc aatcaaagac aaggcaccca tcttgtaaaa gttgccagta
     1321 tccatataga acctatggca gtgtattcta aaaaacacaa agaatttcac cccaaggaag
     1381 gacaaagcat ttctataccc aataatccta caaatgaaag ccgtgcttta cgcattgtag
     1441 caagcaaagg acttatagaa gttaaggata atgagctcat cactccttta gatatcacta
     1501 aaaatcctaa gaagcttaaa tttgtagagt taaaagacgc tcaacttaca aggagtttag
     1561 atgatgtaga ttattctctt attaatagca attttgctat tttagcaggt ttaaaccctg
     1621 taaaagatgg gctttataca gaaagtaaat atagtgaata tggcaatatc atcgccgtta
     1681 aagaaggtaa tgaaaacctt cctaaaatca aagccctagt aaaggccttg caaagcaatg
     1741 aagttaaaaa atttatagaa gaaaaatatc agggtgcttt aatccctaca ttttaaggag
     1801 aacaaatatg aaaaattcaa tcatttctta cccaagaata ggtgcaaata gagaattaaa
     1861 atttgctatt gaaaaatact ttaaaaacca aagttctaaa gaggagcttt taaagagtgc
     1921 taaggattta aggattagac actggcaaga aattcaaaaa gctggcattg attttatccc
     1981 tagtaatgat ttttcacttt atgataatgt cttagatgca gctgtgcttt ttaacattgt
     2041 tcatacaaag tataaaaatt taaatttaga tgctttagat gaatactttg ctcaaagtcg
     2101 aggttatcaa ggagaaaatg gagatgttac agccttagca atgaaaaaat ggttcaatac
     2161 aaattatcat tatttggtgc ctgagtgcga taatgctgat attatagctt taacagggga
     2221 taaaattttt aaagaatatc tcgaagctaa agagcttggt atagaaagca agcctgtttt
     2281 aataggcatt ttcacacttt ttaaactcat tgcctttaaa gatgaaaaaa ctcaaaaact
     2341 cgccaaagaa aagcttttaa acgcttacat agagcttttt gataaactaa atgaacttaa
     2401 agtaacatgg cttgaacttg atgagcctta tttggtttat gatttaagca aggaagatat
     2461 cgctttgttc gaagaatttt accaagaact tttaaatcac aaaaaagatc ttaaaatttt
     2521 acttcaaagc tattttggag acttaagaga tatttatcct aaacttttag aaagcaaatt
     2581 tgatgctttg gggcttgatt ttatcgaggg aaaacaaagc ttagccttag tccaacaata
     2641 cggttttgct aaagataaaa tcctttttgc aggtcttatt aacggcaaaa atatctatgc
     2701 taatgattat gctaaaagcc taaagcttat taaagagctt caaaaatata cacaaaatat
     2761 catcttaaac acttcttgct cacttttaca tgtgccttat agcactgaat ttgaaagcaa
     2821 attagattca agctatctta aactttttgc ctttgctaaa gaaaaacttc aagaacttaa
     2881 agatttaaaa gaaattctaa attctagcga agaaaatccg ctctttagag ccaatcaaga
     2941 gctttttaaa aatatcccag agcgtttaga tgaaaaagtc aaagcaaggc ttaaggcctt
     3001 aaaaaaagaa gattttacca gaacgcctag ttttaaagaa cgcgccttaa tccaaaaaga
     3061 atttttaaaa ctccctcttt taccaaccac aaccataggt tcctttcctc aaagtgccga
     3121 tgtaagatct aatcgccttg cctttaagca agaaaaaatt tcagctcaaa actacactga
     3181 atttaaccaa caaaaaatca aagaatgcat acaaattcaa gaagaaatag gacttgatgt
     3241 tttagtgcat ggagaatttg aaagaaatga tatggtggag tattttggag agaatctaaa
     3301 gggcttttta tttactcaaa atggttgggt gcaaagctat ggcacaaggt gcgttaaacc
     3361 tcctgtgatt tggggtgatg tatcacgcac aaagcctatc accttagctt ggtctaaatt
     3421 tgcacaaagt ttaagtcaaa aaatcgtaaa aggtatgcta actggacctg taaccatact
     3481 taattggtcc tttccaagag aagacatcag tctaaaagaa agcactgagc aaattgcctt
     3541 agctataaga gatgaagtgt tagatcttga aaatgcaggt ataaaaatca tacaaattga
     3601 tgaagcggct ttgcgtgaaa aactgccttt aagaaaaagt gattggcata gtgagtattt
     3661 agattgggct attcctgctt ttaatcttgt gcatagcggg gtaaaagcta aaactcaaat
     3721 tcacactcat atgtgttata gtgaatttag tgatatctta aaagaaattg acgctatgga
     3781 tgctgatgtg atttcttttg aagcttcaag atcaaactta agtcttttag ataccctaaa
     3841 agctattcgt tttaaaactg aggtgggacc aggagtttat gatatacata gccctagagt
     3901 tccaagcgta gaagaattaa gtttaactat agaaaaaatt ttaaacaaat tacctaagga
     3961 gcaaatttgg atcaatccag actgcggact taaaacaaga gcctatgaag aagttatagc
     4021 ctctcttaaa aatttagtta cggccacgca aaaaatacga gaacaattat aaggagtttt
     4081 catgtgtagt ttttcttttg aagtttttcc accaagaaag gatgaaaata tcaaaaatct
     4141 tcatgctatc ttagatgatt tagggcaatt aagccctaat tttatcagcg taacctttgg
     4201 agctggaggc tctattaact cacaaaatac tttagaagtt gcaagcttaa tccaggaaga
     4261 atatcaaatt cctagcatag tacatttacc ttgcatccat tctagtaaag aaaaaatcac
     4321 tcagatactt caaaaatgca aagaaaaaaa tcttaatcaa attcttgccc taagaggcga
     4381 tatatgtgaa aatttaaaaa aaagcaaaga tttttcttat gctagtgatt taatttcttt
     4441 tataaaaaaa caagaatact ttgaaattta tgccgcatgc tatcccgaaa aacataatga
     4501 atctaaaaat ttcatcgagg atatacacca tcttaaaact aaggtaaatg caggaacaga
     4561 taagctcatt actcaacttt tttacgataa tgaagatttt tatactttta aacaaaattg
     4621 tgctttagca gatattgaca tacctattta cgcaggtatt atgcctatta ctaacaaaag
     4681 acaggtttta aaaatttctc aactttgcgg agctaaaatc cctcctaaat ttgttaaaat
     4741 tttagaaaaa tatgaaaata atactttggc tttagaagat gcaggtatcg cgtatgcttg
     4801 cgatcaaatt gtcgatttaa tcacaagtgg tgtagatgga attcatcttt atactatgaa
     4861 taaatccaaa gcggctatta aaatttatga agctgtaaag catttgctta aagaagagct
     4921 tcatgcttag aaaataaact attttttgct tttatcttaa cttattttca ttttttagct
     4981 tatggttttc tataagtaaa acaaaaatta aagataaaag caaacctggt ataataccca
     5041 agcaaagata gaaaaaagaa ttatatttaa aaaagaagaa aagtgcacca aaaagcatta
     5101 aagctaaaga tgcacctttg aaaaattcta aaatatagat caatgacctt cctcaacaac
     5161 agttgcaccc gctaaatata cataagttaa aatcataaaa ataaaagctt gtaaaaatgc
     5221 cataaaagtt aaaagcacat aagcaggaag tggagctata taaggaacta aagctaaaat
     5281 taccattaaa aataaatcgt cgcctttaat atttccaaac aaacggaagg acaaagaaac
     5341 cacacgagaa agatgagaga ctatctctat aggaaacatc aaaggagcta aaagtttaat
     5401 aggtcccatg aaatgagcaa aatactttac aaaaccttgt gccctaatac cctcaaaatg
     5461 ataatataca aaaactataa tagccaagga caaagtcaaa tttaaacttg cagttggagc
     5521 gtgaaaacca ggtattatac ctataatatt actaaaaaac actataatcc ccaaagttgc
     5581 aaccaaagga agatattttc ttgcaccttt ttcacttccc atggtatctc tacccataga
     5641 taaaactccc tctaaaaaag cctcacctaa attttgcata ccgcgtggaa caagttgcat
     5701 agaacgagta gccatcatag ccactataac agcaattaaa gctaccaaac ctatgtgaaa
     5761 aaaataagaa aaagtatgac ttgcatcaag caaagagcta aataaaaata aatctttcat
     5821 ggtttcctca aaaattttat tctaaactcg aaattttagc aaaatcttac ttatatttta
     5881 atgaaaattt acatccattc taaaacttgc gaaagttctt tagcaacaaa acacttaagc
     5941 cctatatctt ccaaaggctt agaaggaaca atggcatttt taaatttttg cattttagct
     6001 tcttttaaac gcgtatcaag gctaaaaacc tctctaattt ctccatttaa actaagctcc
     6061 cctataaaaa tactatcttt gctcaaaggg cgatttttaa aacttgaaat aatagctgca
     6121 accacagcca aatccgccgc agtttcgctt acttttactc cgccactaat atttacaaat
     6181 acatcataat gccccaaagg aatttcaagc tttctttcaa gcaaagccaa aagcatatct
     6241 aagcgatttt tttcatagcc cgtagcgctg cgttttggat aagaactttc acacaccaaa
     6301 gcttgaactt ctaaaaccaa agcacgagat ccctccatta caacacctaa agcacttcct
     6361 gaaatagcct ttccacgagt aaaaaaacga tttgccaaat cttttgcact gatcaaaccc
     6421 ttagcagtca tctcaaaaat acctacttca ttcgttccac caaaacgatt tttaaagcct
     6481 cttaaaagtc tgatttcttt agtggcatct ccctcaaaat aaagcaccac atctaccata
     6541 tgctcaagaa ctctaggtcc tgctatagca ccttctttag taatgtgccc tatgataaaa
     6601 gtactgatat tataagcctt actcacacgc ataagctcaa aagtaatctc acgcacctga
     6661 gtgatgcttc ctgctgctga agtgatttta tttgaatata gagtttgtat agaatcaacg
     6721 ataagaatgc tataatcttt tttgtgcaat tcttctaaaa tattttcaag gcaaagttca
     6781 gtaagtaaaa ataaattcgg agtattagcc tcaagacgat cagctcttaa tttaacctgg
     6841 gctttacttt cttcgccact gacataaagc acttttttac cctgtttagc taaatttgaa
     6901 gcaattttta acaaaagcgt agattttccc acacctggac ttccgcctat aagcactaaa
     6961 gaaccttcaa caagccctcc gcctaaaacc aaatcaagct cattatcatc tgtgctgtat
     7021 cttgtaaaat gctctaactc cacatcttca atacaaacag cctcacttgt tttcatgcta
     7081 acttgcgcaa gctcttttaa aactttaatt tgctcagctt ttaattctac aaaactatcc
     7141 caagctccac aatcaggaca ttttccaagc catttgcttt gttgatttcc acaagcttga
     7201 cattcaaaaa gtgctttatt ttttgccatt attcaaaaat aggatctaat aaagtatcta
     7261 aataagcact tgcattaaat tcttgtaaat ccgtcatttg ctcacccacg cctacataaa
     7321 aaataggaag ctcaagctct cttgctatac taaaaagtgc acccccttta gctgtcccat
     7381 caagctttgt gataatcaca ccatcaagtt ttacaagctc attaaaagct ttagcttgta
     7441 aaattccagc atttccctgt gttccatcta aaactaaaat ttttctatgg ggtgcgcctt
     7501 ctaaagcttt gtttgaaatt cttacaattt tttcaagctc atgagctaaa tttttttgat
     7561 tttgcaaacg ccctgctgta tcgataataa ctctatcaaa atcctttgct tttgctttag
     7621 aaatggtatc aaaagcaacc gctgaaggat catgcccttg tgcagttaaa actatatcta
     7681 catccacttt ttgcgcccaa agttttaatt gctcaatcgc acctgctcta aaagtatcac
     7741 acgctcctaa aatcactttt tgattttggt ttttgtataa ataagcaagc ttggcaatac
     7801 ttgttgtttt tcctgctcca tttactccta aaataagctc tacaaaaggt ttttcttgat
     7861 tggtttcttt tttttcataa agaaaataag aacccataac acgctttaaa tcttcttttt
     7921 ttacttcatt ttgaggtggt aaataataaa ttatctcttc aactatttca taacttacat
     7981 ctgcttcaag caaaatttct tcaagcaaat ctttggttat ctttttattc tctcctttaa
     8041 ctccaacaat attttcaaga gtttttgcaa gtcctttttt aaaaaaatta aacattaaag
     8101 tatagccttt tgtatatcaa tttctagcat ttcttcagga ataagcccta aatactgatt
     8161 aatcaattta gaatgcttgt tgtaaagaaa catggtagga attccattta ccccacctaa
     8221 agctttagct aaaagatagt tattttcacc attagcgact ttataagata ttttatgctg
     8281 ttctataaat ttttgaatct catcgttaga tttatcttct aataaaaccc caactatatt
     8341 aaaatcatta ttatactttt cttgtaattt attaagatga gggatttcag caatgcaagg
     8401 ggtacaccaa gtggtaaaaa atacaaacaa agttacctta tcttcatcgt tgaaatttaa
     8461 aacggcattt tcttttttaa ctgaaattga tcctccatca atcaaattaa gtttaaaatt
     8521 catatcatca ctttgattta tacttgcctc ggtgcttaaa tttacatcat tttgctgctt
     8581 ttctttatca ttgctacaag caacaaacaa acaagatatt gccactagta aaagtatttt
     8641 tttaatcttc attatttatc aatcctttat tattctttat aaaaatgcta aaattataac
     8701 atacataaga taatattttt ttaaaggcat attaatggaa aaaacagatt ttagggcatt
     8761 gcaaaaaata cgccttttca aacattcaaa actaaatttc aaacaagatt ataaaatatt
     8821 taaagaatgt cttaaaataa taaagctatt taaagctaaa aatattttaa tttttattcc
     8881 tttgcattat gaaccaaact taataaaatt tcgccatatt cttaataaaa attacaaact
     8941 ttttgttcca tttatgcaag ataaaagttt aaaaattgta aaattaagat tgccttttat
     9001 taaaaaaagg tttggggttt tagagcctat agattctttt tttaaagcaa aaattgattt
     9061 agctattgtg cctgtaattg gcgtcgataa aaatttaaaa agaataggac atgggcaagg
     9121 tttttatgat agattttttg aaaatttaaa ttacaaacct catataatat ttatccaaag
     9181 tatagatgct ttaagtcaaa ataatctaac acaaaagcat gatatttcag gaaaattata
     9241 cataaaccct tataaaaaat attacaagaa agaaagaaaa aatgatagaa tcacttatcg
     9301 cacttatagc cgctatagtc ggactcggta taggatattt agttgcaaaa aaaatcaatg
     9361 atgccaaata tgaaattttc gtagaacaag ccaaagctaa agccaaagct atagaatacg
     9421 aagcggagct tattttaaaa gatgcaaaaa attcaattct taatgcagaa ttagaagtta
     9481 aaaaaaaata cgaagaaaaa actcacaaat ttcaaaaaga ttttaatcaa aaatttgatg
     9541 atctttctaa aaaagaacaa aaacttcagc aagaagaaga aaaactaaaa gaagataaag
     9601 aatacctttg caagtcacaa aaacacattc aaaacttaca atctgatgtt gataaattaa
     9661 aaaataaata tcaagaaaaa cttgacgatg ttttaaaaat tttagaacat tcgacaggac
     9721 ttacacaaaa tgaagccaaa gaaatcattc ttaaaaaagt agaagaaaat tctcgcgagc
     9781 aaattgcaca tatagtaaga aaatatgaag aagaagcaaa aaatgaagct aaaagaaaag
     9841 ctaatttcat cattgctcaa gctacttctc gttttgcagg tgaatttgca gctgaaagac
     9901 ttatcaatgt tattaacatt aaaaacgatg aacttaaagg acgtatcatt ggtaaagaag
     9961 ggcgcaatgt taaaaccttg gaaatggttt taggtgttga tattatcatc gatgatacac
    10021 caggtgctat tatagtaagt tgttttaatc tttatcgccg tgctattgct acaaaagtta
    10081 tagaactttt agttgaagat ggcagaattc aacccgcgcg catagaagaa attcacgaaa
    10141 aagtgtgtaa agaatttgat agtgccattc tagaagaagg cgaaaccata gttatggatc
    10201 taggtttaaa taaaatacac cctgaaattg taaaactcat aggaaaactc aaataccgag
    10261 caagctatgg acaaaacgct ttagcacatt ctttggaagt ggctcacctt gcaggaatca
    10321 ttgctgctga gtgtggtgga gatgagaatt tagcacgtcg tgcgggaatt ttacatgata
    10381 taggaaaagc attaacccat gattttgaag gatctcatgt ggatttaggt gcagaacttt
    10441 gcaaacgcta caaagagcat cctgtagtaa tcaatgctat ttacgcacat catggacacg
    10501 aagaagctac aagcatagaa tcagcagctg tttgtgcagc agatacttta agtgctgcac
    10561 gacctggagc tagaagagaa gtgttagaag ctttcttaaa aagagtcagt gagctagaag
    10621 atatcgctaa aagtaaagaa ggaattaaaa atgcctatgc aatcaatgcc ggaagagaaa
    10681 ttcgcgtcat agccaatgct cagcttgtta atgatgatga aagtgtactt ttagctaagg
    10741 aaatagcagc tgaaattcaa gaaaaaatgc aatatcctgg tgaaattaaa gtcaatgtta
    10801 tacgtgaact tagagctgta gaatacgcta aataaggttt attatgcaag atatgattga
    10861 tactttaata aaatatggtt atattgtttt attcttttac tctttagggg gcgggatggt
    10921 tggaatttta gctgcaggag ttttaagttc tcaaggaaaa atggatctta gtttttgcat
    10981 tgctcttgct tttattgcta ataccatagg ttcaactttg ctttttatac ttggaaaata
    11041 ttataaaaaa gacattatgc cttattttaa aaaacaccga cgcaagatag cccttgctat
    11101 gataaaaaca aaacaacatg gaattatttt acttgtaact caaaaattta tttatggttt
    11161 aaaaactttc attcccatag ctgcaggtat ggcaaaatat aattttatta aattttttat
    11221 tatcaatact ctagctagtt tggcatgggc tattgttcta ggttttactg cttatacttt
    11281 tgggtatgtt attgaagcaa tttttgataa actgagttta tatccttatg ctgctccttt
    11341 atttttatta tttttagccg
//
LOCUS       DAPIWQ010000046        11303 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.046, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000046 DAPIWQ010000000
VERSION     DAPIWQ010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11303)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11303)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11303
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.046"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            47..802
                     /locus_tag="RJ267_000851"
     CDS             47..802
                     /locus_tag="RJ267_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7388720.1"
                     /translation="MKKILSIALVALVGLFLGACSDSKNKESNASVELKVGTAPNYKP
                     FNYKENSKLTGFDTDLVEEIAKKNGIKIVWVETNFDGLIPALKAGKIDMIASAMSATD
                     ERRQSVDFTKPYYMSKNLYLKLKNNDSLQTKNDLEGKKIGVQLGTLQENTAKAIKNAQ
                     VQSNKDLNIAVLALKNNKIDAIVADQDTAKGFLAENPELVSFYQETDGGEGFSFAFDK
                     NKQKNIIEIFNKGIDEAKTDGFYDTLIKKYELE"
     gene            complement(826..1464)
                     /locus_tag="RJ267_000852"
     CDS             complement(826..1464)
                     /locus_tag="RJ267_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HDV7388721.1"
                     /translation="MKLVLFDLDDTLIQGDSAKLWLKFCVEKGFLPQEYLEKIVFYQK
                     QYQEKKFDMDEFMTFFLQSVKGKNEDRISSLVDEFIKIYIKPYEKAKELIIKYQDQRC
                     IIISATAEFLVRKIASFLGVRESIAIKCERVGDKFSGKAYGIYSFKEGKVLRLKEYLG
                     KDYEKWMKDSYFFSDSINDLPLLESVSKAFVCNGDEKILKIAKERKYEILTF"
     gene            complement(1461..2450)
                     /locus_tag="RJ267_000853"
     CDS             complement(1461..2450)
                     /locus_tag="RJ267_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7388722.1"
                     /translation="MAYLKIKNFKKAYGDKIIFEDINFSAKKGEFITLLGPSGCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVIKPDLLLLDEP
                     LSALDAKIRKYLRVQIKEIQKELELTTIFVTHDQEEALELSDTIILMNEGKIIQNSNA
                     NNLYLLPESHFVASFIGNYNILSPKELDSLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEAGDKIALKFNLSLAKELK"
     gene            complement(2454..3233)
                     /locus_tag="RJ267_000854"
     CDS             complement(2454..3233)
                     /locus_tag="RJ267_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7388723.1"
                     /translation="MNENLSLKAKIYHYAVLFLVFLFLALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSVILVFPLVFVLNYYFLKLKAF
                     VNILIIMPFAVPPIVSCVGLLQLYADNIGGTAWILIFTYFTIALPFIYRALDNAISNV
                     NLNELITSNAMLGGSLMGAIFKLILPNLRNGILVAVFLSFSFLIGEFLYANILVGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            complement(3234..4073)
                     /locus_tag="RJ267_000855"
     CDS             complement(3234..4073)
                     /locus_tag="RJ267_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7388724.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFESKFYLQSIINSLQISFISSIFGLLIGLLASYSLFVLAPSKICKFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSLENSHLNACKMLGGGNFLYWLKIALPLLAPALFGVFVILFANAFGAYAT
                     IYALSSGNFNVAPVRIAALIAGDINLDPYMASALSIIITIIMLVVTFIANFLSKKYNF
                     KVL"
     gene            complement(4070..4879)
                     /locus_tag="RJ267_000856"
     CDS             complement(4070..4879)
                     /locus_tag="RJ267_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HDV7388725.1"
                     /translation="MMSKAILVVLDGLNCKSASINMGYLNALCKENLGKFYSLECELP
                     SMSRPLYECLLTGVKPVLSGIINNKLSFSKQTSIFDLCKEQGLKAGGAAYHWVFELYN
                     KKEFIPSLHRHIEDENLTLPYGHFYYEDDYLDSHLFADGEHLRNKYNLDFTLIHSMNI
                     DDAGHKFGSHSIEYANKTKKVDILISEYLPTWLEQGINVIITSDHGMTEGKSHGGLSE
                     DEILVPFFTFGSAFSYENAKIKQDEICGSICEILGLKHDKRYNDEILKAKK"
     gene            complement(4876..6201)
                     /locus_tag="RJ267_000857"
     CDS             complement(4876..6201)
                     /locus_tag="RJ267_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HDV7388726.1"
                     /translation="MKKVILTSAMLCSVLFGVQEYEANLAGHIIIDSKSTVKPPKDAP
                     DFFKTYGKFANIAREEKIGTFKSKGNRETDFYLPFKNQPIQGHSGIKYIPKKDVFWVI
                     SDNGLGKKYNSYDAMLYAHEFKFDFKNSKYELLKTVFFKDSDKKYPYPITTETTKERY
                     LSGVDFDTESIQVINDEFYIGDEFGPYLLHFDKNGNLKEVFDVYVEGKKLISPDNPSL
                     KFSDKPDGENEKFNIKRSKGFEAMASSKDGSKLYLLLEGSIYNNNAYENEKGKEYLRI
                     IEFNVKNKKFTGKTYKYFLEDKSHSIGDFNMIDDKYGIIIERDQKEGTKDKACKEGED
                     TKHCFNNVAQFKRIYKVKLDDKTHEAQKISYIDLLNIKDRNKISKKPLVNDKFVFPFE
                     TIEGVDIVDDSHIVVENDNNFPYSSSREPNKTDDNEFILLEVKDFLKSK"
     gene            complement(6212..7258)
                     /locus_tag="RJ267_000858"
     CDS             complement(6212..7258)
                     /locus_tag="RJ267_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HDV7388727.1"
                     /translation="MSKKFFLSLGLVALLFSNSQAIDENLIKAAQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYDIEHSDTDMSSAQEIAKFKTEKKNASGDIGDVGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITVGDVSVAAQAVSAVLAANYALGGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNAAKLARE
                     FILSDKGQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYKNARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            7375..8358
                     /gene="corA"
                     /locus_tag="RJ267_000859"
     CDS             7375..8358
                     /gene="corA"
                     /locus_tag="RJ267_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HDV7388728.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSAAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLVRDLKSDEEDRNLIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKVIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
     gene            8379..8921
                     /gene="mog"
                     /locus_tag="RJ267_000860"
     CDS             8379..8921
                     /gene="mog"
                     /locus_tag="RJ267_000860"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HDV7388729.1"
                     /translation="MDTINIGILTLSDRASSGIYEDKATAEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLADEKKCDLIVTSGGTGPALRDVTPEATEAVCDKMMPGFGEL
                     MRLESLKYVPTAILSRQSAGIRNKSFIINLPGNPKAIKECLEPVFPAIPYCIDLIEGA
                     YIEANDEVIKVFRPKKKCQN"
     gene            complement(8918..9103)
                     /locus_tag="RJ267_000861"
     CDS             complement(8918..9103)
                     /locus_tag="RJ267_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HDV7388730.1"
                     /translation="MFFKKKISQKQKEKPKIPINDVILDDRLCKFKNKVQKISKDEAS
                     ASLLARQLSRLIRANKF"
     gene            9230..10417
                     /locus_tag="RJ267_000862"
     CDS             9230..10417
                     /locus_tag="RJ267_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDV7388731.1"
                     /translation="MTLIAILCLYTALLSWISYAQIRFLEREKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFSNFYNLIISIAWIGFGFLYLKELLILNNTRFENTLFLLSFLIITS
                     ILNLPLSIYESFIKDKAHGFSNMTVKLFIKDTMKSLILTLIFGFLILYALLFCYDFFG
                     TFWWIAAFIFAFCIIVIINLIYPTLIAPIFNKMEKLDDENLLKKISSLMKQCGFSANG
                     VYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALNERELLAVLGHELGHFVHKDII
                     KALFNGAITMFLLFFVFANLPEFVYLESHLEGVNGGVFALLFIFANIFSFLISPMLNA
                     LSRKNEFAADQHGAKVTSKEDMKNALIALARENKAFIKTSKTYTFFYLSHPSISDRIK
                     ALS"
     gene            10414..11229
                     /locus_tag="RJ267_000863"
     CDS             10414..11229
                     /locus_tag="RJ267_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDV7388732.1"
                     /translation="MTIKNALMEAKSSLKGYENEAVFILCEYLKKDKAWLFLNQDIKI
                     DHEPYFELIKRFKSGEPFEYIFEKVDFWGLEFKIKKGVLIPRYDSEILLFQILNLCKK
                     NTFNGILEIGFGSGILSIVLAKELGLKITACDINPKALELALENAKLYKVDHLIDFKL
                     CNFKQIKENYDFIFSNPPYIKNSYPIDIWVQKEPKEALFGGEKGYEILEEIIHFSLDK
                     KVKFLACEFGYDQKEILEKILYQNNFIVDFFKDEQGYNRAFIAKFTNMRYDKK"
     gene            11242..>11303
                     /locus_tag="RJ267_000864"
     CDS             11242..>11303
                     /locus_tag="RJ267_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HDV7388733.1"
                     /translation="MKAVNLFLLASIIGVELILG"
BASE COUNT         4078 a         1802 c         1548 g         3875 t
ORIGIN      
        1 tttaaaataa gtataatttt aaaacatttt atatcaaagg aaaaaaatga aaaaaatatt
       61 aagcattgct ctagttgctt tagttggttt atttttaggt gcttgtagtg attctaaaaa
      121 taaagaatca aatgcaagtg tagaattaaa ggttggaact gctccaaatt ataaaccttt
      181 taattataaa gaaaactcaa aacttacagg ttttgatact gatttggttg aagagattgc
      241 caaaaaaaat ggtattaaaa ttgtttgggt tgaaaccaat ttcgatggat tgattcctgc
      301 tttaaaagct ggcaaaatcg atatgattgc ctcagctatg agcgcaactg acgaaagaag
      361 acaaagtgtt gattttacca aaccttacta tatgagtaaa aatctttatc ttaagctaaa
      421 aaacaacgac tctcttcaaa cgaaaaatga tttagaaggt aaaaaaatag gagttcaact
      481 aggaacttta caagaaaata ctgcaaaagc tatcaaaaat gcacaagtac aaagcaataa
      541 agatttaaac atagctgttt tagcactaaa aaacaacaaa atcgatgcta ttgtagctga
      601 tcaagatact gctaaaggtt ttttagctga aaatccagaa ttggtaagct tctaccaaga
      661 aacagatgga ggggaaggct ttagttttgc ttttgataaa aataaacaaa aaaatattat
      721 tgaaatattt aacaaaggca tagatgaagc aaaaactgat ggattttatg atactttaat
      781 taaaaaatat gaattagaat aagcgtgaat tttcacgctt atagcttaaa aagttaaaat
      841 ttcatatttt ctctcttttg caatttttaa aattttttca tcaccattac atacaaaggc
      901 tttgctaaca gactctagta aaggtaaatc attgatagaa tcactaaaaa aataagaatc
      961 tttcatccat ttttcataat ctttacccaa atattcctta agtcttaaaa ccttgccttc
     1021 cttaaagcta taaatcccat aagcttttcc actaaattta tcacccacac gctcgcattt
     1081 tatggctatg ctttctctca ctcccaaaaa agaggcgatt tttctaacta aaaattcagc
     1141 cgtagctgaa attataatac acctttgatc ttgatatttg attataagtt ctttagcttt
     1201 ttcataaggt tttatataaa tttttataaa ttcatctacc aaagatgaaa ttctatcttc
     1261 atttttaccc ttaacacttt gaagaaaaaa agtcataaat tcatccatat caaacttttt
     1321 ttcttgatat tgtttttgat aaaaaacgat tttttctaaa tattcttgag gtaaaaaacc
     1381 tttttcaaca caaaatttaa gccaaagttt agcactatcg ccttgtatta aagtatcatc
     1441 taaatcaaat aaaacaagct tcattttaac tcttttgcta aagaaagatt gaattttaaa
     1501 gcgattttat cacctgcttc ataagtacta tgagtgctaa aatttaaagt atctacctta
     1561 aattcaattt cttgcactct aaccctatag cgtatgatat tgcctagcaa tgatttttct
     1621 ttgattttag cctctaagcc ttcgttagaa atttctatgg tttcaggacg caaggctata
     1681 tcttttttaa aatcgtgttt taaacccaag ctatcaagct ctttagggct taaaatattg
     1741 taatttccta taaagctagc cacaaaatga gattctggca aaagataaag attatttgcg
     1801 ttggaatttt gtatgatttt accctcattc attaaaataa tcgtatcgga taactctaaa
     1861 gcttcttctt gatcgtgcgt tacaaaaata gtggtgagtt caagttcttt ttgaatttct
     1921 ttaatttgca cccttaaata cttacgaatt ttagcatcaa gtgccgataa aggctcatca
     1981 agtaaaagta aatcaggttt aatcaccaaa gatcttgcta aagccactct ttgcatttgt
     2041 ccgcctgaaa gcttatgtgg ataagtttta gcgtattctt caagctcgac gagttttaac
     2101 atttttttca ctcttttttc tatgtccttt ttatccattt ttttgatctt taaaccaaaa
     2161 gctacatttt caaaaacgtt aagatttgga aaaagagcgt aattttgaaa aaccatacct
     2221 atatttcttt tttgaggact taatttggta agatctttat catttaaaga aatttttcct
     2281 ccattaattt ggctaagccc tgctatacac cttaaaagag tggattttcc acagccactt
     2341 gggcctaaaa gggttataaa ctcacccttt ttagcactaa aattaatatc ttcaaaaata
     2401 attttatccc cataagcttt tttaaaattt ttaatcttta aataagccat ttttcactcc
     2461 ttaatcaaac tagctataaa agttgttata aaaattaata caaaataaac tattaccaaa
     2521 gcactagaat aatgcccact ttgatttttg atattataaa gataaacttg taaagtctca
     2581 taagcacttc ctacaagaat atttgcgtat aaaaattcac ctattaaaaa agaaaaactt
     2641 aaaaaaactg ccaccaaaat tccatttctt aagttaggca agataagttt aaaaatcgct
     2701 cccattaaag aacctccaag catagcatta gatgtgatga gttcatttaa attgacatta
     2761 gatatagcat tatctaaagc cctatatata aaaggtaaag ctatagtaaa ataagtaaaa
     2821 atgagtatcc aagctgtgcc tcctatattg tcagcataaa gttgcaaaag ccccacacag
     2881 ctaactatag gaggtacagc aaaaggcatg ataataagta tatttacaaa ggcttttaat
     2941 tttaaaaaat aataatttag cacaaaaacc aaagggaaaa caagaatcac agaaagtaaa
     3001 atactgccca cacaaacaag caaagaatgc caaagagcaa gtaaaaatct ttcgtcatga
     3061 aaaagttctt gataccattt aagcgtaaga tcatcaggca aaacacttac accccaagaa
     3121 gtggaaatag aatataaaaa agtagccatt aaaggcaaag ctaaaaataa aaaaaccaaa
     3181 aacaaaactg cataatgata aattttagct tttaaactca aattttcatt catttaaagc
     3241 accttaaaat tatatttttt agaaaggaaa ttggctataa aggtaacaac aagcatgata
     3301 atagttataa tgatgcttaa agcactagcc atataaggat caagattgat atcgcctgcg
     3361 attaaagcag cgattcttac aggagcgaca ttaaaatttc ccgaacttaa agcataaata
     3421 gtcgcataag ctccaaaagc attggcaaat aaaatcacaa aaacaccaaa caaagcagga
     3481 gcgagcaaag gcaaagctat ttttaaccaa tataaaaaat tgcctccacc taacatttta
     3541 caagcattta aatgtgaatt ttcaagactt ttaaaagctg gaagcaaaag caagattgcc
     3601 aaaggaattt gaaaatacac ataaacaata tttaccccga aattagcata aacactaaca
     3661 aaaggctcta tgcctaaatt tttcaaaaac acattaacta caccattgct tccaagaact
     3721 ataatgaaag caaaagctaa aggaactcct gaaaaattac ttatcatagt atttaaagaa
     3781 aaaagaaatt tacatatttt tgatggagct aaaacaaata aagaatagct cgccaaaagc
     3841 cctattaaaa gtccaaaaat actagaaata aaactgattt gtaaagaatt tataatgctt
     3901 tgtagataga atttggactc aaaaatatgt ataaaattgg ctaaagaata aatttcatcc
     3961 tcttctacat aaaaagcatt aaaaacaatc caaatcaaag gcgctatcat aaaaaaagta
     4021 aaaactataa aaaaaggtaa aatacttaaa aaggctagaa atttttcttt cattttttgg
     4081 cctttaaaat ttcatcatta tatctcttat cgtgtttaag tcctaaaatt tcacagatac
     4141 tgccacaaat ttcatcctgt tttatcttgg cattttcata cgaaaaagca ctaccaaaag
     4201 tgaaaaaagg cactaaaatt tcatcttcac ttaagcctcc atgactttta ccctctgtca
     4261 taccatgatc gcttgtgatg attacattaa taccttgttc taaccaagta ggcaaatact
     4321 cagaaatcaa aatatcaact tttttggttt tattagcata ctcaatagag tgtgagccaa
     4381 atttatgtcc tgcatcatct atattcatag aatgtataag agtaaaatct agattatatt
     4441 tgtttcttaa atgctcccca tctgcaaata aatgagaatc taaataatca tcttcataat
     4501 aaaaatgtcc ataaggcaaa gttaaatttt catcttctat gtggcgatgt aaagaaggaa
     4561 taaattcttt tttattataa agctcaaaaa cccaatgata agctgcgcct ccagctttta
     4621 agccttgttc tttgcaaagg tcaaaaatgc ttgtttgttt tgaaaaactc aatttattat
     4681 taattatccc acttaaaaca ggctttacgc ctgttaataa gcactcgtat aaaggacgag
     4741 acatactagg aagttcgcat tctaaagaat aaaatttgcc taaattctct ttgcaaagcg
     4801 catttaaata tcccatattt atactagcac ttttacaatt taagccatca agcacaacta
     4861 aaatagcttt ggacatcatt tactctttaa aaaatctttt acttcaagta aaataaattc
     4921 attatcatca gttttattag gttctctact tgaagaataa ggaaagttat tgtcattttc
     4981 tacgactata tgagagtcat ctactatatc cacaccttct atggtttcaa aaggaaaaac
     5041 aaatttatca tttaccaaag gctttttaga aattttattt ctatccttaa tatttaaaag
     5101 atctatataa gaaatttttt gagcttcatg agttttatca tctaatttaa ccttgtaaat
     5161 tcttttaaat tgagctacat tattaaaaca atgcttagta tcttcacctt ctttgcaagc
     5221 cttatcttta gtgccttctt tttgatctct ttctatgatg atgccgtatt tatcatctat
     5281 catattaaaa tcacctatgg aatggctttt atcttctaag aaatatttat aagtttttcc
     5341 agtgaatttt ttatttttta cattaaattc tatgattctt agatattctt tacctttttc
     5401 attctcataa gcgttgttat tataaatgct tccttctaaa agcaaataaa gtttagaacc
     5461 atctttagag cttgccatag cttcaaagcc tttagaacgc ttgatattaa atttctcatt
     5521 ttctccatca ggcttatcgc taaattttaa acttggatta tcaggagaaa taagtttttt
     5581 accctccaca tacacatcaa aaacttcttt taaattccca ttcttatcaa aatgaagcaa
     5641 ataaggacca aattcatcac ctatataaaa ttcatcattg ataacctgta tactctcagt
     5701 atcaaaatca accccactta aatacctttc tttggttgtt tcggtggtta taggataggg
     5761 gtatttttta tcactatctt taaaaaaaac tgtttttaaa agttcgtatt ttgagttttt
     5821 aaaatcaaat ttaaactcgt gagcataaag catggcatca taagaattat actttttacc
     5881 caagccatta tcgctaatta cccaaaaaac atcttttttt ggaatatatt ttatcccact
     5941 atgtccttgt ataggttgat ttttaaaagg taaataaaaa tctgtttccc tgtttccctt
     6001 agatttaaaa gttccaattt tttcttctct agcgatattt gcaaatttcc cataagtttt
     6061 aaaaaaatca ggagcatcct taggaggttt tactgtactt ttagaatcta tgataatatg
     6121 ccctgctaaa ttggcctcat actcttgaac tccaaataaa acactgcaaa gcatagcact
     6181 tgttaaaata acctttttca tccaatctcc tttatttcat atccactata actttttctt
     6241 gccaaagttg tggcaattct ttagcgcttt tttcccaagc tttttgatct ttgattgctc
     6301 ttgcattttt gtattgctca cttggtaaaa gtttagcttt tatatcatct ggcaaggtaa
     6361 tatgatcaat tcttattggc cttgcataac cttttgctag attgatttgt cctttatcag
     6421 aaagtataaa ctcacgggct aatttagccg catttggatg ttttgcgtat ttattgataa
     6481 tagttgtata acccgaaata acactaccat cagcagggat taaaacttca taacgatctt
     6541 tgcccacttt atctctatag cctaaaccat taaaatccca aactaaaccc acttcaactt
     6601 cacctttttc aagattggct atacttacat cattatttac aagtcttcct tgtttggcta
     6661 aagtattaaa aaaagctaaa gcaggactta aatctttttc atccccacct aaggcataat
     6721 tagctgccaa aactgcactc acagcttgag ctgctacact tacatcgccc acggtaattt
     6781 tataatttcc cttaagcaaa tcttgccaag ttttaggtat atcttttact acatctttat
     6841 tgactataaa agctatggtt cctgtataag ctaaaagcca atttccatct ttatctttag
     6901 cccaagttgg aatttgatcc cagtaacttg tcttaaaagg ctgagctact ccttgtttaa
     6961 ccgctatctc tccaaaagac gcccctacat cccctatatc accgcttgca tttttctttt
     7021 cggttttaaa tttagcaatt tcttgagctg aactcatatc tgtatcacta tgttctatgt
     7081 cataaagatt tttaagatct gcccaagtat ccttccagtt tgcccaagta tcaggcatag
     7141 ctaaagaatt taccctacct tctgcttgcg cagctttaat caaattctca tcaatagctt
     7201 gtgaatttga aaacaataaa gcaacaagac ctaaacttaa gaaaaatttc ttactcattt
     7261 ttttcctttc aaaaaatatt ttggaaattt aatgagtttt agaaacattt tagaaacaag
     7321 ttaattttta agcaaacaag gttataattt taaagtcata aacaaggagc gatcatgctt
     7381 tatatttata tcaaaactca aaatgcttta gttcaaagaa tcaattttaa tctcgatagt
     7441 caagaactac cgcaaaatat tttatggatt gatttacttc atccaagtgc agcagaaatt
     7501 gcttttatat caagtgaatt taatcttgag tttcctacaa aagaagaaag ggaagaaata
     7561 gagcttagcg caaaatattg ggaagataat gcaacaataa ccatcaatgc tcatttttta
     7621 gtaagagatc ttaaaagtga tgaagaagat agaaatttaa tcaagcttcg cacagaaatt
     7681 gttacttttg ctaccgctaa aaatatctta tttactataa gatataacga atttagcact
     7741 tttgaagaaa ttcaagcaag gattttagct agtccgaaga attttgaaga tggttttgat
     7801 attattgata aaatgtttga agtacgcgtt gaaaaagatg cggatttact agaatggata
     7861 gataaagaag caagacgctt aagaacaagt gttttagaaa aaaaagatga atatagttat
     7921 gatgaaatgc taaaggatat ttcaagtttg caagagctta atatgcgcgt aagagattct
     7981 ttatttgata agcgtcgcgc tatgacttct ttgttaaaaa gcgataaaat cgataaagac
     8041 ataaaacaaa atctcactat agttttaaaa gacttaaatt ctttggttga atttagcgtt
     8101 tcgcaactta atatcttaga taatatccaa accattttag ccagtcaaat caacatagaa
     8161 caaaacaaag tcattaaaat tttcaccgtt gcaactgttg ccatgatgcc acctacttta
     8221 ataggaactg tttatggtat gaattttaaa ttcatgcccg aacttgaact tcactatgct
     8281 tatcccatag tgcttggcgt gatggtaatt tctatcattt tacctttggt tgttttcaag
     8341 aaaaaaggat ggttataaaa atttattaag gagaaacaat ggatacaata aacataggaa
     8401 ttttaaccct aagcgataga gcaagtagtg gtatatacga agataaagcc actgctgaaa
     8461 ttgaaagagt gttaaattca tatataaaaa atgatattat ttatcataaa gaattaatcc
     8521 ctgatgatta tgatttgatc attaaaaaat tactttatct agcagatgaa aaaaaatgcg
     8581 atttgattgt tacaagcgga ggtacaggtc cagcacttcg tgatgtaacc ccagaagcca
     8641 cggaagccgt gtgtgataaa atgatgccag gttttggaga acttatgcgc ttagaaagtt
     8701 taaaatatgt cccaacagct atactttcaa gacagagtgc aggaattcgc aataaatctt
     8761 ttatcattaa tttaccagga aatcctaagg ctataaaaga atgcctagag cctgtttttc
     8821 cggctatacc ttactgtatc gatttgatag aaggtgctta tatagaagca aatgatgaag
     8881 ttattaaggt ttttcgccct aagaaaaaat gtcaaaatta aaatttatta gctctgataa
     8941 gtctgcttaa ttgtctagca agcagacttg ccgaagcttc atctttgctt atcttttgca
     9001 ctttattttt aaacttacaa agtctgtcat ctaaaatcac atcattgatt ggaattttag
     9061 gcttttcttt ttgtttttgt gaaatctttt tcttaaaaaa cattctttaa tcctttttta
     9121 taaatatata ccaacttagt tgaaaagaat attattttag attttaaact attaacttta
     9181 tttcattatt ttaagctaga attcgcaaaa aactaatcaa ggaaaaataa tgactttaat
     9241 tgcaatttta tgtctttaca cagcactttt atcttggatt tcctatgctc aaattcgttt
     9301 cttagaaaga gaaaaagaca aacaagctca aattttaagc gaaaaagact atcaaaatgc
     9361 agcagatatt gccatcgaaa atgaaaaatt taaactattt tccaattttt ataatttaat
     9421 catcagtatt gcatggatag gttttggatt tttatacctt aaagaattac ttatcttaaa
     9481 caacactcgt tttgaaaata ctttattttt attatctttt ttgataatca caagtatttt
     9541 aaatctacct ttaagtattt atgaaagttt tatcaaagat aaagcccatg gtttttcaaa
     9601 tatgactgta aaacttttta tcaaagatac tatgaaaagt cttattttaa ctttaatatt
     9661 tggattttta atcctttatg ctttgctttt ttgctatgat ttttttggaa ctttttggtg
     9721 gattgcggcc tttatttttg ccttttgtat tatagtgatt ataaatctca tctaccctac
     9781 cttgatagca cctattttta ataaaatgga aaaactagac gatgaaaatt tactgaaaaa
     9841 aatcagctct ttaatgaaac aatgtgggtt tagtgcaaat ggggtttatg ttattgatgc
     9901 aagcaaaaga gataagcgtt taaatgctta ttttggtgga ctttttaaaa gcaaaagagt
     9961 ggtgcttttt gatacattat taaaagcctt aaatgaaaga gaacttttag ctgttttggg
    10021 acacgagctt ggacattttg ttcataagga tattatcaaa gctttattta acggcgctat
    10081 aactatgttt ttactttttt ttgtttttgc aaatttacct gaatttgttt acttagaaag
    10141 tcatctagaa ggagtaaatg gcggtgtgtt cgctctttta tttatctttg caaatatttt
    10201 tagcttttta atctctccta tgcttaatgc cttaagtaga aaaaatgaat ttgcagctga
    10261 tcaacacgga gctaaagtta caagcaaaga agatatgaaa aatgcattga tagctctagc
    10321 aagagaaaat aaagctttta tcaaaacaag taaaacatat acattttttt atctcagtca
    10381 tccaagtatt agtgatagaa tcaaggctct ttcttgacta taaaaaatgc tcttatggaa
    10441 gctaaatcta gcttaaaagg ttatgaaaat gaagcggtat ttatactttg cgaatatcta
    10501 aaaaaagata aagcttggtt atttttaaac caagatataa aaatagatca tgaaccttat
    10561 tttgagctta taaagcgttt taaatctgga gaaccttttg aatatatatt tgaaaaagtg
    10621 gatttttggg gcttagaatt taagataaaa aaaggcgttc taatccctcg ctacgatagt
    10681 gaaattttac tttttcaaat tttaaattta tgcaaaaaaa atacttttaa tgggatttta
    10741 gaaataggat ttggaagcgg aattttaagc attgttttag ccaaagaact tgggttaaaa
    10801 atcacagcct gtgatatcaa tcccaaagcc ttagaattag ctttagagaa tgccaaatta
    10861 tacaaagtcg atcacttgat tgactttaaa ctttgtaatt ttaagcaaat taaagaaaat
    10921 tatgatttta ttttttcaaa tccaccttat attaaaaatt catatcctat agatatttgg
    10981 gtgcaaaaag aacccaaaga ggctttattt ggcggagaaa aaggatatga aattctagaa
    11041 gaaatcatac atttttccct tgataaaaaa gttaaatttt tagcttgcga atttggctat
    11101 gatcaaaaag aaattttgga aaaaatttta tatcaaaata atttcattgt tgattttttc
    11161 aaagatgaac aaggttataa tcgtgctttt atagctaaat ttacaaatat gcgttatgat
    11221 aaaaaataaa aggagaaact cttgaaagct gttaatttat ttttacttgc ctccatcata
    11281 ggggttgaac tcatactagg aat
//
LOCUS       DAPIWQ010000047        11281 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.047, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000047 DAPIWQ010000000
VERSION     DAPIWQ010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11281)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11281)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11281
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.047"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            44..259
                     /locus_tag="RJ267_000865"
     CDS             44..259
                     /locus_tag="RJ267_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HDV7388734.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLS
                     SMEISTLKKEKLHVKDELSQYLANYKK"
     gene            269..1366
                     /locus_tag="RJ267_000866"
     CDS             269..1366
                     /locus_tag="RJ267_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CZB domain-containing protein"
                     /protein_id="HDV7388735.1"
                     /translation="MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQ
                     AALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIA
                     NSINASLGNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQ
                     LADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDISKDIT
                     QHSIINKCEVAENASLDLFNVFKEMLDESDH"
     gene            complement(1398..1994)
                     /locus_tag="RJ267_000867"
     CDS             complement(1398..1994)
                     /locus_tag="RJ267_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HDV7388736.1"
                     /translation="MAFKNLKELSFEKSNYIKPKRFAYESNGRLCTWDFIESKDSVSV
                     LLYHKELESFIFVRQFRIPLWYHQMHDKDYVKDDDMGYTIELCSGLVDKKLSLEEIAK
                     EECIEELGYAPKNLEKIGDFYTGFGSGVSKQSFYFVEVDEKDKISSGGGVDDEEIEAV
                     YVKVQDFEKKCKNMIRTPLLDFAYMWFLKEKWGKLKII"
     gene            complement(2077..3006)
                     /locus_tag="RJ267_000868"
     CDS             complement(2077..3006)
                     /locus_tag="RJ267_000868"
                     /inference="COORDINATES: protein motif:HMM:NF012801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDV7388737.1"
                     /translation="MVALYGENEYFITDDLIFTTGLRYIYSNLFDSEFTPRIYLVYHL
                     NDNIAFKGGVSKGYKTPSAKQLTNGYYNYANGNALFGNPDLKPEESINYELGADFRVF
                     DFAHYSITGFITDFTNQISSEYLTGMQNGINCSNGTVCKRPINLGKTQTKGIEFAFNT
                     KTYNGFSLNSSYTFMDNRYKDSQKNWFGGDRIENLPRHIAMLKLNYERGKFNSYIKTR
                     ARLDTIAKARVGGNGSLPWQKYKPFYIVDLGINYKINKQSSLSFAVQNLFDKNFFDPQ
                     VTRWDGANPAGYANRYQDYTEGRSFWLSYKYDF"
     gene            complement(3034..3573)
                     /locus_tag="RJ267_000869"
     CDS             complement(3034..3573)
                     /locus_tag="RJ267_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HDV7388738.1"
                     /translation="MIEDTLSISARLKYYDKAASDLKWPTPVWNNNNQKPDNYQQRPD
                     NYQIAIHSPGAFTSLGFGSRLNWTVDDKNNIYFDIERYINEISVNSISSRAIKSEKQL
                     FKDNIVLNHDGNYDFDSTNSYLQYGSTKDKELHSQIWVGEGKVVLPWNLGQYGNLVNT
                     FGARIDYEMLKNDQASAGS"
     gene            complement(3582..4169)
                     /locus_tag="RJ267_000870"
     CDS             complement(3582..4169)
                     /locus_tag="RJ267_000870"
                     /inference="COORDINATES: protein motif:HMM:NF019335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDV7388739.1"
                     /translation="MTQIKNMKFKKSLLCFLILSGALLKAEETYQLNDVVVSASGFEQ
                     DLVDAPASISIITKEELEKKPIKDIGEAIGDIPGVDVTMDKTGTYDFSIRGFGSSYTL
                     VLIDGKRQSVANGFYTNVFKGSESGYLPPLSMIERIEVIRGPASTLYGSDAVGGVINI
                     ITKKNPDKIEANIEFNTLLQQHSNHYGNAGVLMLM"
     gene            complement(4303..5241)
                     /gene="accA"
                     /locus_tag="RJ267_000871"
     CDS             complement(4303..5241)
                     /gene="accA"
                     /locus_tag="RJ267_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HDV7388740.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVSILKKNLEKEISKT
                     YKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRAFRDDPAIVCFMGYLGEKK
                     IIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVAGLAEKFQIPILFLIDTPGAYPGI
                     GAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVADKLAMMKNSVFSVI
                     SPEGCAAILWNDPAKSEAATKAMKVTADDLKSQGLIDDVIDEPTNGAHRNKEAAAVAI
                     ADYVKKSLNELENIDVRELSANRMQKILKLGAYQEA"
     gene            complement(5243..6457)
                     /locus_tag="RJ267_000872"
     CDS             complement(5243..6457)
                     /locus_tag="RJ267_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HDV7388741.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICNGESGVNKITLFDATDF
                     PVQIAAEVKNFDPLEVVDGKEVKKIDRFIQLGIKAAREAMQDAGFSEELDKEEFGIVS
                     ASGIGGLPNIEKNSIICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNAKKMLVIGAEAAICPVGIGGFASMKALSTRNEDPQHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGATIYAELIGFGESADAHHITSPTLDGPL
                     RAMKKALNMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGNNIPLISSTKGQTGHCL
                     GAAGAIEAVVSVMVLRDGVVPPTINQLVKDDECDLDYIPNISRKVDLKVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            complement(6484..6717)
                     /gene="acpP"
                     /locus_tag="RJ267_000873"
     CDS             complement(6484..6717)
                     /gene="acpP"
                     /locus_tag="RJ267_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDV7388742.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIDNLKK"
     gene            6827..7495
                     /gene="tenA"
                     /locus_tag="RJ267_000874"
     CDS             6827..7495
                     /gene="tenA"
                     /locus_tag="RJ267_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HDV7388743.1"
                     /translation="MMLFSNLIKENQKIWNAYLHHDFVKKLEDKSLKQENFLFYLKQD
                     YIYLLNYAKCYARLALNSNTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELDIK
                     DESLVNIAYSRYMLSVGENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYK
                     EWILTYGSENFQNEAKEFEDFVNSYTSSVGAQKFQKLSEIFHTVTRLEVAFWEHSLRM
                     ELNL"
     gene            complement(7519..8376)
                     /locus_tag="RJ267_000875"
     CDS             complement(7519..8376)
                     /locus_tag="RJ267_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoB--CoM heterodisulfide reductase iron-sulfur
                     subunit B family protein"
                     /protein_id="HDV7388744.1"
                     /translation="MQKEYAFFPGCVLSQAAKESKISLEAIAPILGWKLNEIKGWSCC
                     GASQAQCVDPIATLVANARNIALAEEMKMPMLTTCSTCMLTLTKAKNTLDKGAKERIN
                     IFLAQGGMKYQGSTPITSLLWELYEDLDNLKSKVKKPLSNLKVALFYGCHSLRPEDAF
                     GKKESSTNPKSFESVVEVLGAKIVPFEKRLDCCGFHASYPAEKSVKKMSSQIVNNASE
                     NQADCVVTPCPLCQMQLDIYQERFQDYTNSKARLPIIHLSQLVGLALGLSKEMVGLDY
                     NIIDASKIA"
     gene            complement(8380..9345)
                     /locus_tag="RJ267_000876"
     CDS             complement(8380..9345)
                     /locus_tag="RJ267_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HDV7388745.1"
                     /translation="MKIIIDRFNGKEKYEQSYDIDDKDIQGKTLLSLLLFIKKTKDIT
                     LNFTASCQSAICGACAVRVNGHSYLACDTKMQDLLKEYDNPSSIRISPLGNFRVISDL
                     IVDWEPSIENLRKIRPAMVAKNEFSAEKGCKQSQEEFDRISKQWDCILCGSCASECNK
                     LEADSSDYMQPFVFTHVWRAAADSRGKDPMLHVKPSVMNGLWLCVHCQECADRCPKGI
                     SSVSDIANLRVMAIKKGLNEGLGPDHAEAFYKDLVEGSGRLNEIYLALRSEGVIGSMG
                     KTDIAFKLMRAGKMNPMHVFGEGEIEGYKDLVKMIKAAQEAAVKE"
     gene            complement(9342..11177)
                     /locus_tag="RJ267_000877"
     CDS             complement(9342..11177)
                     /locus_tag="RJ267_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDV7388746.1"
                     /translation="MGEFSRRDFIKTACISVGALAASSSGVYALDDSSKMDKDINLPS
                     CDVLVIGSGGAGLCAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGD
                     SYKLHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGG
                     ASKKRCNYSADKTGHILMHSCLDDAISSGVKFLMNHELLDIGVVDGKCEGVVLRDIQS
                     GGIYPVLCKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPT
                     GVANGGTLITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGY
                     GEGLGAYVLCDVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGGIE
                     VAKFEDMGTKIAGIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDAS
                     FGKGAKTHELAQKWQVRFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLL
                     AKKLEDIQARYEKIRIPNPNEVMNTAFTDYVELGNLILLSRCACLAARNRLESRGAHT
                     REDYPKRDDKNFLKHSIVNLENDELKLSYKDVVVTEFSLDGRRVQ"
BASE COUNT         3804 a         2224 c         1475 g         3778 t
ORIGIN      
        1 cttattaaat aaattttaaa tttcactaat acaaggagag tttatgctac atgaatatag
       61 agaattaatg tcagagctaa aaggtaaaga tgctcatttt gataaactat ttgatcgtca
      121 taatgaactt gatgacatga ttaaagatgc agaagaaggt agaacttctc ttagcagcat
      181 ggaaatttca actttaaaaa aagaaaagct tcatgtaaaa gatgaactta gccaatatct
      241 agcaaattat aaaaaataag gcaaaacaat gtttggaagt aaaataaacc attctgatct
      301 tcaaaaactt gaagaagaaa ataaaaatct tacacataaa attgaaaaat ttcaatcgga
      361 aaatttagaa ttaaaaaata aaattacatc attagaacaa gcggctttag agtctaaact
      421 taaaacagat cttttaaatg ttttattaac tggggtttta aaaaatatta ctattattca
      481 aggcgatatg ttagaaaatg taaataaggc agaagttatc tctagctatt ctaaaacttc
      541 tcttgctgaa atggatgaac ttaaccatat tgctaattct atcaatgcct ctttgggaaa
      601 tattacagaa tcagccaata aaacaagaga tgttgcagga acattgcata gaagtgtaga
      661 tgaaattact aatgtaatta atctaattaa agatgtttcc gatcaaacca atcttttagc
      721 tcttaacgct gccatagaag ctgcacgcgc aggtgaacat gggcgtggtt ttgctgttgt
      781 tgccgatgaa gtaagaaaac tagctgaaaa aacacaaaaa gcaaccacag aagttgaaat
      841 gaacatcaac cttctaaagc aaaatgcaaa tgaaatgtat actcaaagtg agcaagttga
      901 aaaaatttct atagattcta atgctcatat tatgagtttt tccgaaaaat ttactcactt
      961 agtaaatgaa gcgcattcta ctaattcaaa tgcagttggt atcgcttcag aagctttcgt
     1021 atctttagca aaactagatc atatagcttt taaattaaat ggttataaag aaattttttc
     1081 caaatcagga aagcaattag ccgatcatac atcttgtcgc ttaggaaaat ggcttgctag
     1141 cacaggaaaa gaaagatttg ggcaaaataa aagcttctta aaaattaacg agccacatga
     1201 aaaagttcat gaaaatatga ataatgctat aacaatagca aatacagaag atattagcaa
     1261 agatattact caacacagca taattaataa atgcgaagtt gctgaaaatg catcgcttga
     1321 tcttttcaat gtatttaaag aaatgcttga tgagtcagat cattaaaatc ctaggttgaa
     1381 cctttttaag gtttaaccta aataatcttt aattttcccc acttttcctt taaaaaccac
     1441 atataagcaa aatcaagcaa aggcgttctt atcatatttt tacatttttt ttcaaaatcc
     1501 tgcaccttaa cataaacagc ttcaatctct tcatcatcaa ctccacctcc agaagaaatt
     1561 ttatcttttt catcaacttc tacgaaataa aagctttgct tgcttacacc tgaaccaaac
     1621 cctgtataaa aatctcctat tttttctaaa tttttaggag catatcctag ttcttctata
     1681 cattcttctt ttgctatttc ctctaaagat aattttttat ccacaagccc agaacaaagc
     1741 tctatagtat agcccatatc atcatctttt acataatctt tatcatgcat ttgatgatac
     1801 caaagtggta tacgaaattg gcgtacaaaa ataaaacttt ctaattcttt atgatacaaa
     1861 agcactgaaa cactatcttt agattctata aaatcccaag tgcaaagcct accattactt
     1921 tcataagcaa atctcttagg cttaatataa tttgattttt caaaagaaag ttcttttaaa
     1981 tttttaaacg ccataataaa accttttatt tatttttcac attgtacttt atttttgctt
     2041 ttttgaaaat ataaaggtga ttaaagcctt aaaaaattaa aaatcatatt tataacttaa
     2101 ccaaaaactt cttccttctg tataatcttg atagcgattt gcatatccag caggattagc
     2161 cccatcccat cttgtaactt gcggatcaaa gaaattttta tcaaaaagat tttgcactgc
     2221 aaaacttaag ctagattgct tattgatttt ataatttatc cctaaatcta ctatataaaa
     2281 aggcttatat ttttgccatg gcaaactacc attaccacca actcttgctt tagctatagt
     2341 atcgagtctt gctcgtgttt ttatatagga attaaattta cctcgctcat agtttaattt
     2401 taacattgct atatgccttg gtaaattttc tattctatca ccaccaaacc aatttttttg
     2461 actatcttta tagcgattat ccataaaagt ataacttgaa tttaggctaa aaccattgta
     2521 agttttggta ttaaatgcaa attctatacc tttagtctgt gtttttccaa gattaatagg
     2581 acgcttacaa acagtgccat tgctacaatt aataccattt tgcatacctg ttaaatattc
     2641 actactgatt tgatttgtaa aatcagtaat aaatcctgtg atagaataat gtgcaaaatc
     2701 aaatacccta aaatcagcac ccaattcata atttatactt tcttctggtt ttaagtcagg
     2761 gtttccaaaa agagcattgc cattggcata attataatat ccatttgtca actgcttggc
     2821 agaaggagtt ttatagcctt ttgaaacacc tcctttaaag gctatattat catttaagtg
     2881 ataaaccaaa taaatcctag gggtaaattc agaatcaaac aaattgctat aaatataacg
     2941 caaacctgta gtaaaaatca aatcatcggt tataaaatac tcattttccc cataaagcgc
     3001 aaccatggtt tgatcaagat ttttacctct tatttaacta cctgcgcttg cttgatcatt
     3061 ttttaacatc tcataatcaa tccttgcacc aaaggtattt actaaattac cgtattgacc
     3121 taaattccaa ggtaaaacaa ccttaccttc tcctacccaa atttgactat gtaattcctt
     3181 atccttagtg ctaccatatt gtaaatatga gttagttgaa tcaaaatcat agttaccatc
     3241 atgatttaaa acaatattat ccttaaaaag ttgtttttca cttttaatag ccctactact
     3301 tatagaattc actgaaattt cattaatata tcgctctata tcaaaatata tattattttt
     3361 atcatctact gtccaattaa gcctagaacc aaaacctaag ctagtaaaag cacctggact
     3421 atgaatagca atttggtaat tatcaggtct ttgttggtaa ttatcaggtt tttgattgtt
     3481 attattccaa accggtgtag gccattttaa atcagaagct gccttatcat aatacttcaa
     3541 ccttgcagaa attgataatg tatcttcaat caaaggagtt gctacataag cattaaaacg
     3601 cccgcattgc catagtgatt agagtgctgt tgcaaaagag tattaaattc tatatttgct
     3661 tcgattttat caggattttt cttggtgata atatttatca caccgcctac agcatcactg
     3721 ccataaagtg tagaagctgg accacgtata acctcgatac gctctatcat agataaaggc
     3781 ggcagatatc ctgactcact gcctttaaaa acattagtat aaaacccatt tgcaacactt
     3841 tgacgttttc catcaattaa aactagagta taagaactac caaaacctcg tatgctaaaa
     3901 tcataagtgc ctgttttatc catagtcaca tctacacctg gaatatctcc tatagcctcc
     3961 cctatatcct taattggctt tttttcaagc tcttcttttg taatgataga aatactagca
     4021 ggcgcatcaa ccaaatcttg ttcaaaacca ctagcgctaa ccacaacatc attaagttga
     4081 tatgtttctt ctgcttttaa caaagctcca gataaaatta aaaaacacag taaacttttt
     4141 ttaaatttca tatttttgat ttgagtcaaa ttaattcctt taaaaaaaat tattttgata
     4201 tttaaaatca tttttggagt ataaaaaaag aatactttta attaacttaa ttttgataac
     4261 aattataaat aataaaatta tttaaaaaag cgaagtaaaa gcctaagcct cttgataggc
     4321 tccaagcttt aaaattttct gcatacgatt tgcagaaagt tctcgtacat caatattttc
     4381 aagttcattt agggattttt ttacataatc agcaatagct actgctgcag cttctttatt
     4441 gcgatgtgca ccatttgtag gttcgtctat cacatcatca attaaacctt gagattttaa
     4501 atcatcagct gttactttca tagctttggt tgcagcttca ctttttgcag gatcattcca
     4561 aagtattgca gcgcaacctt caggagaaat tactgaaaaa acagaatttt tcatcattgc
     4621 aagtttatct gcaaccccta tagctaacgc cccgccacta ccgccttctc cgataactat
     4681 agcaatggtc ggtattttca aatcacttaa ttcatataaa tttctagcga tagcttcact
     4741 ttgtcctctt tcttcagcac ctattccagg ataagcacct ggagtatcta tcaaaaataa
     4801 aataggaatt tgaaatttct ctgcaagtcc tgctactctt aaggctttgc gatatccttc
     4861 aggatgtggc atcccaaaat ttctagcgat tttatctttt gttccacgtc ctttttgctc
     4921 accaattaca attatttttt tctctcctaa ataacccata aaacaaacaa tagcaggatc
     4981 atctctaaag gcacgatcac catgtatttc gtgagcgtca tttaaaataa gttcaatata
     5041 gtcaagagca taagggcgat ctggatgacg cgctaattgc aaacgctgaa aatcacttaa
     5101 attcttataa gttttagaaa tttctttttc aagatttttc tttaaaattg atacagcttc
     5161 agtatctcct ttaatctgag cattgataat gtcctcgtca atttgctgaa tatttttttc
     5221 aaaatctaaa taagaagcca tattaatcta cttttttaaa tacaacacag ccatttgtgc
     5281 caccaaaacc aaaagaatta ctcatcacca cttttaaatc tacttttctt gatatatttg
     5341 gaatataatc aagatcacat tcatcatctt ttacaagctg attgattgta ggtggaacta
     5401 ccccatctct taaaaccata acactaacaa ctgcttcaat tgcacctgca gcacccaagc
     5461 aatgacctgt ttgtcctttg gtggaactta taagcgggat attattgcca aaaagctctt
     5521 taattgctgc tgtttcattt ttgtcattta caggggttga agttccatgt gcattgatat
     5581 aatctacctt tggattccct gccatattta aagctttttt catagccctt aaaggcccat
     5641 ctaaagttgg tgaagtaata tgatgcgcat ctgcactttc tccaaatcca attaattcag
     5701 cataaatcgt agcaccgcgt tttttagcct cttcatattc ctcaaaaact aaagctccag
     5761 caccttctcc catgacaaaa ccatctcttt ctttgtcaaa tggtcttgaa gcatgctgtg
     5821 gatcttcatt tctagttgat aaagctttca ttgaagcaaa accacctata cccacaggac
     5881 aaatcgcagc ttctgcacct atgactaaca tctttttagc atttcccaaa gctatacttt
     5941 tataagcttc tcctatagca tgagttcctg ctgcacaagc tgtaacacaa gaaatatttg
     6001 gccctttaag tccatgctct atagaaatca aacctcctaa catatttaca agtgctgaag
     6061 gtatgaaaaa aggggaaatt ttacgcggac ctcgctcgga acaaataatg gaattttttt
     6121 ctatgttagg caaacctcca ataccagaag ccgaaacaat gccaaattct tctttatcta
     6181 attcttcact aaatccagca tcctgcattg cttctcttgc tgctttaatt ccaagttgta
     6241 tgaaacggtc aatttttttt acttctttgc catcaacaac ctctaatgga tcaaaatttt
     6301 taacttcagc tgcaatttga acaggaaagt ccgtagcatc aaaaagagta attttattta
     6361 ctccgctttc tccattgcaa attgctttaa atgaactttc tttatctaaa ccaagggcat
     6421 tgatcatacc aatacctgta actacaactc ttttcaagaa taagctcctt gcaagaaaaa
     6481 aaattatttt tttagattgt caatataatt tacaacatct tcaattttaa ttaatttttc
     6541 agcatcacta tctggaattt ctacttcaaa tttttcttct aaagccataa taagctctac
     6601 aacatctaaa gaatcagcac ctaaatcttc aataattttt gattccattt taactgcatc
     6661 tgcatcaata cttaattgct ctactactac tgcttttaca tcatcaaatg ttgccatttg
     6721 ttctccttta aaaaattaaa ataaagcgta ttttactata aaaagcttaa aatatttata
     6781 gtttttcatt atacttgaaa ataaaatatt aaaacataaa ggaaaaatga tgcttttctc
     6841 taatttaatc aaagaaaatc aaaaaatttg gaatgcttat ctacatcatg attttgttaa
     6901 aaaattggaa gataaaagcc taaagcaaga aaattttctt ttttatctca agcaagatta
     6961 tatttatttg cttaattacg caaaatgtta tgcaagatta gcacttaact caaatactgc
     7021 aaaagaactt cgttttgcta tgaaatttca aaattatata gttgaaggag aaatggaact
     7081 tcatcgtgca attttatctc ttggcattaa tgcagatgaa ctcgatataa aagatgaaag
     7141 tttagtcaat atagcctatt cgcgttatat gttaagcgta ggtgaaaatg gagatttttt
     7201 agatatgtta gttgctctta gtgcttgcgc tataggctat gcaaaaatag gtgctgaaat
     7261 tataaatcgt ttaaaaaatg aaaatttaaa agatcatcct tacaaggaat ggattttgac
     7321 ctatggaagt gaaaattttc aaaatgaagc taaagaattt gaagattttg ttaattctta
     7381 tacttcaagt gttggtgcac aaaaattcca aaaactcagc gaaatttttc atactgtaac
     7441 acgcttagaa gtggcttttt gggagcattc tttaagaatg gaattaaatc tttaaacatg
     7501 ggctttttgc ccatgttttt atgcaatttt acttgcatca ataatattat aatctaaacc
     7561 aaccatttct ttagaaagtc ctaatgcaag tcctactaat tgtgataaat gaataatagg
     7621 caatcttgct ttagaattag tataatcttg aaatctttct tgatagatat caagctgcat
     7681 ttgacaaagt ggacaaggtg ttacaacaca atcagcttga ttttcacttg cattattgac
     7741 aatttgacta gacatttttt tcacagattt ttctgcagga taagaagcat gaaaaccaca
     7801 acaatcaagg cgtttttcaa aaggaactat tttagcccct aaaacttcta ctacactttc
     7861 aaaacttttt ggattggttg aactttcttt tttaccgaaa gcatcttcag gtcttaaact
     7921 atggcaacca taaaataaag ctacttttaa atttgaaagc ggctttttca ccttgctttt
     7981 taaattatcc aaatcctcat aaagctccca caaaagactt gtaataggcg ttgaaccttg
     8041 atatttcatt ccaccttgtg ctaaaaaaat attgatgcgt tcttttgcac ccttatcaag
     8101 agtatttttt gctttagtta aagttagcat acaagtacta caagttgtaa gcattggcat
     8161 tttcatctct tctgctaaag caatatttct tgcattagct accaaagtcg caataggatc
     8221 aacacactgc gcttgagaag ccccacaaca actccacccc ttaatttcat tcaacttcca
     8281 acccaaaata ggtgcaatag cttcaagtga aattttagat tcttttgcag cttgagataa
     8341 aacacaacct ggaaaaaaag cgtactcttt ttgcatattt tactccttaa cagcagcttc
     8401 ttgtgccgcc tttatcattt taaccaaatc tttataccct tctatttcac cctcgccaaa
     8461 aacatgcata ggattcattt ttcctgcacg cataagttta aaagctatat ctgttttacc
     8521 catagaacct ataacaccct cagaacgcaa agcaagataa atttcattca agcgtcctga
     8581 accttcaact aaatctttat aaaaagcttc agcatgatca ggccctaagc cttcatttaa
     8641 acctttttta atcgccatca ctcttaaatt tgctatatca cttactgaac ttataccctt
     8701 tggacaacga tcagcgcact cttgacaatg aacacaaagc caaagtccat tcattacgct
     8761 gggttttaca tgcaacatag gatccttacc tcgagagtcc gccgctgcac gccaaacatg
     8821 agtaaaaaca aaaggttgca tataatcgct actatctgct tctaatttat tacactctga
     8881 agcacagcta ccacataaaa tacaatccca ttgcttgcta atacgatcaa attcttcttg
     8941 actttgttta cagccctttt ccgctgaaaa ttcatttttt gccaccatgg caggacgaat
     9001 ttttcttaaa ttttctatag aaggttccca atccacaatt aaatcagaaa ttactctaaa
     9061 atttccaagc ggagaaatgc gtatacttga aggattatca tattctttta acaaatcttg
     9121 cattttagta tcacaagcaa gataagaatg cccattcaca cgaactgcac aagccccaca
     9181 aattgcagat tgacaagagg cggtaaaatt taaagtaata tcttttgttt ttttgataaa
     9241 aagcaaaaga gagagcagag tttttccttg tatatcctta tcatcaatat cataactttg
     9301 ttcatatttt tccttgccat taaaacgatc tatgataatt ttcattgtac tctccttcca
     9361 tcaagtgaaa actcagttac cacgacatct ttataactaa gttttaattc atcattttct
     9421 aaatttacaa tgctatgttt taagaaattt ttatcatctc gctttggata atcttctcta
     9481 gtatgagccc cacggctttc aagtctattt ctagctgcta aacaagcaca gcgagaaagt
     9541 aaaatcaaat taccaagctc tacataatct gtaaaagcag tattcatcac ttcattagga
     9601 tttggaatac gaattttttc atatctcgct tgtatatctt ctaatttttt tgctagaaga
     9661 tcgagttttt cttgagttct aaaaatcccc atattatccc aattttgact tcctagctct
     9721 tctcgcaatt catacatttc ttgaccattt ccgccattat ttgtaatttc tttaaatcta
     9781 acctgccatt tttgagcaag ttcatgagtt tttgcccctt ttccaaaact tgcatcttta
     9841 gcataatttg tcgcaccaat gcctgctaaa tgccctgtta caactgcatc ggctaaagaa
     9901 tttcccccta gtctattagc tccatgtata gaaatgcaag aagcttctcc acctacataa
     9961 attccagcaa ttttagtacc catatcttca aatttagcca cttcaattcc acccatagaa
    10021 taatgcgccg ttggacggat aggtacagga gtatctacta aatcaatatt ttcaaaaagc
    10081 attgcagtgt gacgaatttt tggtaaatct tttaaaattt tttcttttcc taagtggcgt
    10141 acatcgcaca aaacataagc tccaagtccc tcgccataac ctctaccttc acgaatttct
    10201 gtttctatag cacgcgcaac cacatctcgc ggtgcaagct ccattttttc atggtaattt
    10261 ttcataaaac gctcaccacg attatttaaa agatatcccc cttcaccgcg cgccgcttct
    10321 gtaataagag ttccaccatt tgcaactcct gttgggtgaa attgtatcat ctcaggatct
    10381 tcaaaaccaa gtcctgctct aagagcagct gccacaccat ctcctgtggc aataaaagga
    10441 gttgaagttc tattataaaa tatccttgtg tatccccctg tagcaatcac caaagctttg
    10501 cataacacag gataaattcc accgctttgt atatctctta aaacgacacc ctcgcatttt
    10561 ccatccacaa cacctatatc caaaagttca tgattcatta aaaatttcac accactacta
    10621 atagcatcat ctaaacaaga atgcattaaa atatgacctg ttttatctgc agaatagtta
    10681 cagcgtttct tagaagctcc tcccattaaa cgctgagcta ctccaccttg ctcatttctt
    10741 gaaaacaagg ttcctataaa atccatatta aaaatagcct ttccagctaa ttcgcaaaat
    10801 tttaaagccg catcttgatc taccaaataa gctccgcctt taatagtatc ataagcatgt
    10861 aatttatagg aatctccatt agaaaaatca gtaactccat taattccacc ctctgccata
    10921 caagttgcgt tacgcgatgg catcatcttt gtagctacta caacgcttaa ttttggattt
    10981 tcttttctca ctgcggctgc agcacacaaa cctgctccac ctgatccaat taccaaaaca
    11041 tcgcaagaag gtaaatttat atctttatcc atcttagatg aatcatctaa agcataaact
    11101 ccacttgaac ttgcagctaa agctcctaca ctaatacagg ctgtttttat aaaatctctt
    11161 ctagaaaatt cacccatatc attctcctta tttaaaaaaa ttaataataa tttttaatgt
    11221 aagtcaatct tacataaccg catgccaaaa atccaaaaac aaactctcct ttcaatataa
    11281 a
//
LOCUS       DAPIWQ010000048        10761 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.048, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000048 DAPIWQ010000000
VERSION     DAPIWQ010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10761)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10761)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10761
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.048"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..992
                     /locus_tag="RJ267_000878"
     CDS             <1..992
                     /locus_tag="RJ267_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF5644 domain-containing protein"
                     /protein_id="HDV7388747.1"
                     /translation="YENFASFYDLLLQVQNDDIYFDFDKDEDTYIVVNKQIIPLFTPL
                     EKIAKEFDFNLCIEPLSTKRAIKDLIIDKNDFLDKYKYLEKFGDEEDKKLYAKYDYLY
                     YATEILDYLPEYMGDGVFYLASKMIEKYPEKKIEILKTLADKEKGIFYHLESKNEILE
                     TTIKNLQNEILNLGLFDKNILHFDLPKTNAFDNEIKELKEIKHNFKDFNIAFYGFNAC
                     DTLKSKLKAKFISYENSIKNNGFSLLNLNPTLSYKIAADIVLDAYDSGADFMVVKEEK
                     DFYLFDTCAKKLMQTSKRDFEDFYILSRFEFLALIEGIQAPSLKNHTLKVSLI"
     gene            989..1372
                     /locus_tag="RJ267_000879"
     CDS             989..1372
                     /locus_tag="RJ267_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDV7388748.1"
                     /translation="MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIISDEKIHTAKP
                     LFIISKNSPFLSIPFSKETLFESLNEFDNALKAAALQLALEQKRLLEEKIDAIALEFK
                     KDYENKIDLAIKDLKNKLVKALNDE"
     gene            1365..2048
                     /locus_tag="RJ267_000880"
     CDS             1365..2048
                     /locus_tag="RJ267_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmD family RNA methyltransferase"
                     /protein_id="HDV7388749.1"
                     /translation="MNDEFISVKDFFNHNEKRKKFLQKQEIKPPKEKTKKTKETKLYT
                     NIESGKYKGKKLLLPSLTTTRSTKSIVKSCVFNVIREDLRSKIFIEAFGGSALIAAEA
                     LSNYALKAYAIELDIKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILYL
                     DPPFDIREGFSDIYEKIYHFLENLDLKTLNLIIFEYHSTIKTPEKIQNFQKVKEKKFG
                     STSLSFYSS"
     gene            2107..3153
                     /locus_tag="RJ267_000881"
     CDS             2107..3153
                     /locus_tag="RJ267_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HDV7388750.1"
                     /translation="MRVLTIFLLFMTSIFAVQIKDVANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTPRPGGTGSHSTAATVMGG
                     ANVEREIPQNFSQNNDLTLSLKVADFKTANNIERVLNTVFGEEVAKAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYKPQSKVIIDERTGTVIAGVDVEVEPVLITHKDITIKIDP
                     NNNTVANQNEIDMKDGGFVDPSSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            3153..3494
                     /locus_tag="RJ267_000882"
     CDS             3153..3494
                     /locus_tag="RJ267_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388751.1"
                     /translation="MKVDNFLNTYSMNSALLDRAAKARSLESSIKINDNDIVTKSKED
                     KALKEQTNAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            3557..3754
                     /gene="flgM"
                     /locus_tag="RJ267_000883"
     CDS             3557..3754
                     /gene="flgM"
                     /locus_tag="RJ267_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HDV7388752.1"
                     /translation="MINPIQQSYVANTALNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATAAAIADSLI"
     gene            3797..4231
                     /locus_tag="RJ267_000884"
     CDS             3797..4231
                     /locus_tag="RJ267_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HDV7388753.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESVTPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDGLVNKMFDINDGTNNAYGDKKTNPESIFKINV"
     gene            4241..6067
                     /gene="flgK"
                     /locus_tag="RJ267_000885"
     CDS             4241..6067
                     /gene="flgK"
                     /locus_tag="RJ267_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HDV7388754.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITTGGVQVGTGTAVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRFP
                     DLQNTGILQDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGINFHPLKLDYDDKNKSYSIYYET
                     PDEKVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINET
                     NNLYASSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITID
                     VNTTMNDIMRQINANTDDNDNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTDASDMKVKDSILNDPSTVRASSNGVDSGNDMANKIIQ
                     LQYKKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQS
                     KSGVNTNEELAALIQYQSSYGAAAKIVSTVDQMLDTLLGLKS"
     gene            6084..6848
                     /locus_tag="RJ267_000886"
     CDS             6084..6848
                     /locus_tag="RJ267_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HDV7388755.1"
                     /translation="MKNFIHLKAKLDFLANQKNTNHSLFETPDPLQIAKIHNDEFIAL
                     ICALFAYGNAKNIVNFLKKLDFSLLNLQEKQIKKELKNLKYRFQNEKDIQEIFITLSR
                     LKNEISLYELFYQAYQERENTTDAILAFMQKIKTLNSYSSYGYDFFFGKIWQNTPTSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHAHKISLTLGLLKRKIYDYKSV
                     LELTQNLKKLDANDPIKYDFALYRLGQSKEIDKFKE"
     gene            6852..7616
                     /locus_tag="RJ267_000887"
     CDS             6852..7616
                     /locus_tag="RJ267_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HDV7388756.1"
                     /translation="MGFEHLNTIYYFILFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPRLAWGVFFTALGAAIGSYSVLFVKDEQ
                     LKLIILIFLTLTFLYTALRPNLGKHESEPKIKNIKIFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMRKASINTKILNFTSNIIALAIFLWQYELLWAVGLLMGVGQVLGA
                     YLGSKLVLKTNGKFIKTLFLIVVGATIIKVAWDYFS"
     gene            complement(7609..8790)
                     /locus_tag="RJ267_000888"
     CDS             complement(7609..8790)
                     /locus_tag="RJ267_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HDV7388757.1"
                     /translation="MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEI
                     QKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRELYFMHSCKIMKKILDNLILAQN
                     LNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
                     LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFV
                     IFIVMLILAYKNFHSFAFSCDFLFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISK
                     AFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSLVFSMLSVAMKSGRL
                     EVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNF
                     N"
     gene            complement(8787..10346)
                     /locus_tag="RJ267_000889"
     CDS             complement(8787..10346)
                     /locus_tag="RJ267_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HDV7388758.1"
                     /translation="MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFNKLANFCNLH
                     FVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMIIRSKPCSLELLEQVKTFMICEK
                     IDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
                     LSFHASDIHIEARNNDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRK
                     TQDGSFELDFENERYDFRVSCLPLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILK
                     KILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDPIEYKIPLVQQILLN
                     SKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALST
                     IDRLLDMQAKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERC
                     HHSGFFGRELIAECLEINEDLACAIRENQDKTILMELAKKYGFQTMFEQGLKKAKEGL
                     TSIDELLRVVR"
     gene            complement(10336..>10761)
                     /locus_tag="RJ267_000890"
     CDS             complement(10336..>10761)
                     /locus_tag="RJ267_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HDV7388759.1"
                     /translation="IEHKKHLEQKILQAQILQEKNKISREKLYKELEEVKAVQENTHI
                     SKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQK
                     QDSWLIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK"
BASE COUNT         4085 a         1673 c         1549 g         3454 t
ORIGIN      
        1 attatgaaaa ttttgcaagt ttttatgatc tgcttttgca agttcaaaat gatgatattt
       61 attttgattt tgataaagat gaagatactt acatagttgt aaataagcaa atcataccac
      121 tttttacacc tttagaaaaa atagcaaaag aatttgattt taatctttgt atcgagcctt
      181 taagtacaaa aagagctatt aaagatctta tcatcgataa aaatgatttt ttagacaaat
      241 acaaatatct tgaaaaattt ggcgatgaag aggataaaaa gctttatgca aaatatgatt
      301 atttatatta tgcaactgaa attttagact atcttcctga atatatgggc gatggagtgt
      361 tttatttggc ttcaaaaatg atagaaaaat atcctgaaaa aaagatagaa attttaaaaa
      421 ctctagcaga taaagaaaag ggtatttttt atcatcttga aagcaaaaat gaaattttag
      481 aaacaacgat caaaaaccta caaaatgaaa ttttaaattt agggcttttt gataaaaata
      541 ttttacactt tgatttacct aaaaccaatg cttttgataa tgagatcaaa gaacttaaag
      601 aaattaaaca taattttaaa gatttcaata tagcttttta tggttttaat gcttgcgata
      661 ctttaaaatc caaacttaag gctaaattta tttcctatga aaacagtata aaaaataatg
      721 gctttagctt gcttaatcta aatcctacgc taagctataa aatagccgca gatattgttt
      781 tggacgctta tgatagcggg gctgatttta tggtagtaaa agaagaaaaa gatttttatc
      841 tttttgatac ttgtgctaaa aaacttatgc aaacaagcaa aagagatttt gaagactttt
      901 atattttgag ccgttttgag tttttagccc ttatcgaagg catacaagct ccatcattaa
      961 aaaatcacac tttaaaggtt agtttgatat gaaaatctct ttagaatgca aagatctcat
     1021 catagaaaaa actttagaac tttttttaaa agatcatttg gtaatgaaaa aaaattgtga
     1081 tttcatcatt agcgatgaaa aaattcatac cgcaaaaccc ttatttatca tctctaaaaa
     1141 ctctccattt ttaagcatac catttagcaa agaaaccttg tttgagtctt taaatgaatt
     1201 tgacaatgcc ttaaaagcag cagctttgca acttgcactt gaacaaaaaa gactgcttga
     1261 agaaaaaatt gacgctattg ctttggaatt taaaaaagat tatgaaaata aaatcgatct
     1321 tgccataaaa gatcttaaaa acaaactcgt aaaagcactt aatgatgaat gatgaattta
     1381 taagcgttaa agactttttt aatcacaatg aaaaaagaaa aaaatttctt caaaaacaag
     1441 aaattaaacc tcctaaagaa aaaacaaaaa aaactaaaga aacaaagctt tatacaaata
     1501 tagaaagtgg taaatacaaa gggaaaaaac tacttttacc tagtcttaca acaacaagaa
     1561 gtactaaaag catagtcaaa agttgtgttt ttaatgtaat aagagaagat ttaagaagta
     1621 aaattttcat tgaagccttt ggcggaagtg ctttaatagc ggctgaagca ctaagtaatt
     1681 atgctttaaa agcttatgct atagaacttg atataaaagc ttataaaatt gctttagaaa
     1741 atgctaaaaa catagatcca aatttagaag tgatccatgc aaatactttt gaaattttac
     1801 ctaaactcat agaaaattca aaaaatgaaa tcatcttata tcttgaccca ccttttgata
     1861 tcagagaagg ttttagtgat atttatgaaa aaatttatca ttttttagaa aatttagatt
     1921 taaagacttt aaatttaatc atttttgaat accactcaac cataaaaact cccgaaaaaa
     1981 tccaaaattt tcaaaaagtt aaagaaaaga aatttggatc aactagctta agtttttact
     2041 cttcttaact cacttggaac actttttgct tgatctatca tcaacaatag attaaaggaa
     2101 gaatccatga gagttttaac gatattttta ctctttatga caagcatttt tgcagtgcaa
     2161 atcaaggatg tagcaaatac tgtaggtgta agagataacc aacttatagg ttatggactt
     2221 gttgtagggc ttaatggaag cggcgatgga acaagctcta aatttacact acaatctatc
     2281 tcaaaccttt tgcaaggtat gaatatcaaa gtagatccta atgatatcaa atcaaaaaat
     2341 accgcagctg ttatggttac agccaaactt ccagcctttg caaaaagcgg agataaactt
     2401 gatattaccg tttcatctat gggtgatgca aaatctttac aaggtggaac acttttactg
     2461 actgcacttc gtgggattga tggtgaaatt tatgctatag cacaaggctc tatctcaaca
     2521 ggaggtttaa cacctagacc aggaggaaca ggttctcact caactgctgc aactgtaatg
     2581 ggcggagcta atgtagaaag agaaattcca caaaatttta gccaaaacaa tgatctaacc
     2641 ttaagtttaa aagtagcgga ttttaaaacc gcaaacaata tagaaagagt tttaaatact
     2701 gtctttggcg aagaagtagc taaagccatc gactctcgca cagtaaaact caaaaaacct
     2761 gaagatcttt caaatgttga ttttatggca agagttttag aacaagatat agcttataaa
     2821 ccacaaagca aagttatcat cgatgaaaga acaggaacag tgattgctgg agttgatgta
     2881 gaggtagaac ctgttttaat cactcataaa gatatcacta taaaaataga tccaaacaat
     2941 aacacagtag ctaatcaaaa tgaaatcgat atgaaagatg gtggttttgt agatccaagt
     3001 tcaaatacct taagaatcaa caatgcaaaa agcacagttg caaatatagc tagaatgctt
     3061 aacaaacttg gagcaacccc aaatgacatt attgctatta tggaaaattt aaagcgcgca
     3121 ggtgcaatta acgcggattt ggagatcatc taatgaaagt ggataatttt ttaaatactt
     3181 atagtatgaa tagcgcttta cttgatcgtg cagccaaagc aagaagttta gaatcaagca
     3241 tcaaaataaa tgacaatgat atagttacaa agagcaaaga agataaagcc ttaaaagaac
     3301 aaaccaatgc ttttgaggca ttttttttaa agcaagtttt agatgtatct ttaaaaagtc
     3361 aaaattcact ctttggaaaa gatgccagcg atgaaatata ctcttccatg tataatgata
     3421 ccatgagtaa agctttaagt ggaggtatgg gtttttcaaa attattatac gattttttaa
     3481 aagaaagggg ttaagttttt taaatttagg tcgatatggt ttgtagagga ttataactaa
     3541 gatcaaggag gcagaaatga tcaatcctat acaacaaagt tatgtggcaa ataccgcatt
     3601 aaatacaaat agaatagata aagaaactaa aacaaacgat actcaaaaaa cggaaaatga
     3661 taaagcgagt aaaatcgcag agcagattaa aaacggtact tataaaatcg atacaaaagc
     3721 tacagctgct gcgattgctg actctttaat ctaaaacttt cattctcctt ttttttgaga
     3781 gagaaaagga gaaaatatgc ttaaacaaag acttgatgaa gtaaatgcta tcttagcaaa
     3841 acttattgct ttaaccgaag aagatataga aaatatcaaa gtggctaaac atgagagtgt
     3901 aacgccaagt gtagaagaaa aaaacaaact tatcgcggaa tttattacag ctaaaaaaca
     3961 acttgatgtt gccttggttg agctaaataa tagctctaca aaagggctta gtgaactctt
     4021 agatgatgaa gataaacaaa aactagatct acttaaaaaa aatcttcaaa accttcatag
     4081 taaaaacaaa gagtatgcta aatttgttct tattgtcaaa gattttcttg atggcttagt
     4141 aaataaaatg tttgatatca atgatggaac aaataatgct tatggagata aaaagacaaa
     4201 tccagagtca attttcaaga tcaatgtata aggatttata atgggtattt ttggaacatt
     4261 atacacaggt gttacaggct taaaggcaag cgaagttcaa atcgcaacaa ctggaaataa
     4321 tatctcaaat gctaatgcaa ctttttatac acgccaaaga gtggtgcaaa ctacaaatgg
     4381 atatattaca acaggtggag ttcaagtagg cacaggaact gctgtagaaa gtatagtgcg
     4441 tttgcatgat gagtattctt actataaatt aaaaggtgca tctactcaac tagaatatac
     4501 taaatatatg gcttccactt tacaagaaat tgcgcagcgt tttcccgact tacaaaatac
     4561 tggaattttg caagatttag aaaattataa caaagcttgg aatgattttg catctaaccc
     4621 caacgaaaat gccacaaaaa tagcccttgt aaaagcttct cagaccttaa cagaaagcgt
     4681 taataacact tttgcaacct tagataaaat ccaaaaaaaa gtaaatgatg atattaaaaa
     4741 tacagttgat gagattaata gaattggtga agaaattgct actataaata aacaaattta
     4801 tggacaagaa gccttaccaa cagaacacgc aaatgaactt agggatagaa gagatgaact
     4861 tgagcttact ctttcaaagc tagttagtgc agttgcaagc aaaaatgaaa tcaatcaaga
     4921 caatcgcctt gatacaacca tcactgatcc aggacatcaa tacaatctaa gtatagaagg
     4981 ttttagtata gtagatggaa taaattttca tcctttaaag cttgattatg atgataaaaa
     5041 taaatcttat agcatttatt atgaaactcc tgatgaaaaa gttcgcgatc ttactgcaaa
     5101 aattagcggt ggacagcttg gtgctcaact tgacttacgc ggtagaaact atagcaaaag
     5161 cgaaggaaaa tatgaagatg gaattatcca aggttatatg gattctttag atacttttgc
     5221 taagaccatg atcaatgaaa ctaacaatct ttatgcaagt tctgcgaaaa gttctgttac
     5281 ttctgattat ctatctgggc ttaagggaga tattccttta gttaattacg atagaaccat
     5341 acaaccagga agttttgata tagtcattta tgatgataaa ggcgataaaa aactcaccaa
     5401 aaccatcacc atagatgtaa atacaaccat gaatgatatc atgcgccaaa tcaatgctaa
     5461 tacagatgat aatgacaata aaaattcaaa cgatgatgtt gatgatcata tcaatgcaag
     5521 ttttagctac gatgcaaaaa ctggagatgg tttatttcaa atcaatgcaa aatcaggttt
     5581 taaggtagcc attgaagata agggcacaaa tttcgcaggt gcgtttagca taggtggttt
     5641 tttcagcgga actgatgcaa gtgacatgaa agtaaaagat tccatcttaa atgatccaag
     5701 tacagtaaga gcaagctcaa atggagttga tagtggtaat gacatggcaa ataaaatcat
     5761 ccaacttcaa tataaaaaag ttaattttta taatgaagat ggcactatcg ataatcttac
     5821 tatggaagaa tattaccgca aacttacagg taaaatagcc tcagatggtg aaaataacaa
     5881 tgtcgtcaat tcaagcaatg aaactcttta taattctgtt tatagcgagt accaatctaa
     5941 aagtggcgta aatacaaatg aagaattagc cgcccttata caatatcaat caagttacgg
     6001 tgcagcagca aaaatcgtct caaccgtaga tcaaatgctt gataccttac tagggcttaa
     6061 atcttaagct ctagtaatat caaatgaaaa attttatcca tcttaaagct aagctcgatt
     6121 ttttagccaa tcaaaaaaat accaatcatt ccctttttga aactccagat cctttgcaaa
     6181 ttgctaaaat tcacaatgat gaatttattg ccttaatttg tgctttattt gcctatggaa
     6241 atgctaaaaa tatagtaaat tttctaaaga aacttgattt ttctttatta aaccttcaag
     6301 aaaaacaaat aaaaaaagaa cttaaaaatt taaaataccg cttccaaaat gaaaaagata
     6361 tacaagaaat ttttatcact ctttcaaggc tgaaaaatga aatttcactc tacgaacttt
     6421 tttatcaagc ctatcaagaa agagaaaata ccacagatgc catcttagct tttatgcaaa
     6481 aaatcaaaac cttaaattca tattcaagtt atggatatga ttttttcttt ggaaaaattt
     6541 ggcaaaacac ccctacttca cctcttaaac gctataatat gtatctaaga tggatggtta
     6601 gaaaagatga acttgatctt ggacttttta ccaaaattca caccaaagat cttttaattc
     6661 cacttgatac acatgcacat aaaatttcct tgactttagg acttctaaag cgtaaaatat
     6721 atgattataa aagtgtttta gaactcacac aaaatttaaa aaaattagat gcaaatgatc
     6781 ccataaaata tgactttgca ctctatcgtt tagggcaaag taaggaaatt gacaaattta
     6841 aggagtgaag aatgggtttt gagcacttaa atacgattta ttatttcata cttttttttg
     6901 tagctctttt tgctggtttt atagattcta ttgtaggtgg aggagggctt attactctac
     6961 cagcactcat agcctgtgga attcctgcgc atttatcctt agcaacaaac aaactccaaa
     7021 gcgtctttgg ttcttttacg gctactttaa cttattttaa atccaccact ctacctcgtc
     7081 ttgcttgggg tgtttttttc acagccttag gagcagctat aggaagttat agtgttcttt
     7141 ttgtaaaaga tgagcaatta aagcttatta tcttaatctt tttaactctt accttcttat
     7201 atacagcctt acgtcccaac ttaggcaaac acgaaagcga acctaaaata aaaaatatca
     7261 aaatttttca tttaatttgt ggcttaactt taggatttta tgatggattt ttagggcctg
     7321 gaacgggttc attttggatt tttgcttgtg tgatgctact aggttttaat atgagaaaag
     7381 cgagcattaa tactaaaatt ttaaatttca caagcaacat cattgctctt gctatatttt
     7441 tatggcaata tgaactttta tgggctgtag gtttgcttat gggtgtagga caagttttag
     7501 gagcttattt aggctcaaaa cttgtattaa aaactaatgg aaagtttata aaaactttat
     7561 ttttaatcgt tgtaggagct actattatta aagtagcttg ggattatttt agttaaaatt
     7621 gacccctgag ctaagctccc acataggtaa aaatatacct aaagccaaaa acaaaactaa
     7681 aagcgctaca aataaagtca tcataggctc taaaaaaatc aaaaatctat ccatcaaatt
     7741 ttcgcttttt tgttgataat atttggcaat ttcttcactt aatacttcaa gtcttccact
     7801 tttcatcgca acactaagca tagaaaacac caaagaatca aaaatatcaa tctttttaaa
     7861 agcctgactt aactcaagac cagaatctat aaaactaaaa agttttttat actgaaaaat
     7921 taaaaattta ttttcaagcc ctataatagc taaatcaaaa gctttagata ttgaaattcc
     7981 attttttaaa agcaaagaaa aaaccataaa aaaataataa ttttgattat aaataatcaa
     8041 acgagaaatc aaaggtactt ttaaaaataa aaaatcgcaa gaaaaagcaa aagaatgaaa
     8101 atttttataa gctaaaataa gcataacaat aaaaataaca aacaaaaata tgcaaaaaat
     8161 tccatagtca tctaaaaaat tataaatttc taacattaca tgcgtgataa aaggcaaact
     8221 cgcgcctaaa ttttcaaata aatctttaaa attaggcact acaaaaagca ttaaaaacaa
     8281 aaatgctccg ataatactta aaaaaaccaa agtaggatat ctaaaagcct tttttaattg
     8341 tttttgactc tctaagcttt tttctcgaag tttagaaatt tgactaaaca cttcactgat
     8401 ttttcctgtc ttttcagccg ttttaatcaa agctaactcc gcacgattta atccaaaatt
     8461 agcattttca aaagcttgat ttagattttg ggctaaaatt aaattgtcta atattttttt
     8521 cataatcttg caagaatgca taaaatataa ttctctaatc gcttcttgaa cacttaatcc
     8581 aacttcacac aacaaagcta gctctttaaa aaagagtata aaattttcat cctttaatct
     8641 ctgaaaatta gatttttgaa tttcttttat atcaatgatt ttccaattct ttgataaggc
     8701 ttttgcttgt gctgtattta aattttcagc ttttatagtt tttgtataat tttgattgtt
     8761 tttaagaaat tctacttcat aaaatttcat cttacaaccc ttaaaagctc atctatactt
     8821 gtaagacctt ctttggcttt ttttaaacct tgttcaaaca tagtttgaaa gccatatttt
     8881 tttgcaagct ccattaaaat cgttttatct tgattttccc taattgcaca agctaaatct
     8941 tcattgatct ctaagcactc agcgattaat tctctgccaa aaaatccact atgatgacaa
     9001 cgctcacatc cttttggttc aaaaaattca ccttcaaatt caatataatg ttttttgctt
     9061 ttttgcttac accaaggaca aagttttcta accaaacgct gtgctataac aagactcaaa
     9121 gccgatgcta tcaagtaact ttttgcttgc atatccaaaa gcctatcaat ggtactaaga
     9181 gcatcattag tatgcaaggt gcttaaaagc aaatgacctg ttaaagaagc tttaagtgca
     9241 atatctaaac tttcttcatc gcgaatttct cctatcatga taatatcagg atcttgcctt
     9301 aaaattgctc ttaaaacact attaaactcg actccaactt ttgaattgag caaaatttgc
     9361 tgcactaaag gaattttata ttctatagga tcttctgcgg aaataatctt tttttcaata
     9421 cttttcaact catttaaaca cgcgtataaa gttgtgcttt taccactacc tgtaggaccg
     9481 gttaataaaa tcattccatt gggacgatgt aaaatctttt ttaaaatttc taaattttta
     9541 tttccaagat ttagtttata caaatccaaa atttctttat catgttttaa aattcttata
     9601 acaacacttt cgccataaat caaaggcaaa catgaaacac gaaaatcata tctttcattt
     9661 tcaaaatcta attcaaaact tccatcttgt gtttttcttg attcagctaa attcaaacaa
     9721 gctaaaaatt tgacatgaaa aaccaaagct tcataaatat ccttctcaaa aatagcaaat
     9781 tcacgcaaaa ttccatcaac cctaaaccta atcaaagcat cattatttct tgcctctata
     9841 tgaatatcac tcgcatgaaa agataaaatt tcatgtaata aaaaatcaaa aatttgactg
     9901 atgcaacttt ggtcatctct tttgtgattt tcttgccatt caagtctaag cttaatgctt
     9961 aatcttttaa tctcctcttg aatgcgaatt tgatttaaaa ttttagctat ctttaattca
    10021 tcggcaattg cagtgtcgat tttttcacaa atcataaaag tcttaacttg ctctaaaagc
    10081 tctaaagaac aaggtttgga tctaataatc ataaagccgt cattgttttt aataagcaga
    10141 aatttaaatt ttaaaagtaa agaaaaaggt ataccttcat aaataaaatc attatcttca
    10201 tctaaatcaa caaaatgtaa attacaaaaa tttgctaatt tgttaaaaaa atcccaagaa
    10261 gtgatattaa atttagtgca aatttcatca agacttattt cattatcaat ataagcttga
    10321 aaaattttat ccattctact ttccatctaa ttccattaaa ccataataat ttatataagc
    10381 atctaaagca ctttgagctt ctttttcttc acctaaagct cttttagcct gagcaaaaat
    10441 cagccaagaa tcttgttttt gcttgtcaag ttcattggct tttaaagccc aaaatattgt
    10501 cttttgataa gctttaatat caaaatactt cttagctaaa tttaatgcct tttcatagct
    10561 tggattttga taaaaagatt tttttaaatc agaaatattt aaaattttag aatcaatttc
    10621 tatcttgcta atatgtgtat tttcctgcac cgctttaact tcttctagtt ctttatataa
    10681 cttttcccta gaaatcttat ttttttcttg taaaatttgc gcttgaagaa tcttttgctc
    10741 caaatgcttt ttatgttcaa t
//
LOCUS       DAPIWQ010000049        10738 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.049, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000049 DAPIWQ010000000
VERSION     DAPIWQ010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10738
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.049"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            95..1894
                     /locus_tag="RJ267_000891"
     CDS             95..1894
                     /locus_tag="RJ267_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin attachment protein"
                     /protein_id="HDV7388760.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMDDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFTMMDRFRAIVGKDANLQTLARGVNTVTLDTGSSELID
                     LHAKLFAKHGTTTIRNFDALNDINNLKFSGECIAKHGLKHEIAITLMDLPPNCKGAHD
                     VPFYEKILKEILAAEIPFHSICFKDASGTSNPNKIYETIKMARKILPQDMHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTMMHALKGKDYDLGGLEEEKI
                     LKYEEVLKDCLKEYFLPPEATMVNPLIPFSPMPGGALTANTQMMRDNNILDKFPQVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGSWKKIAEGYGKMVLGYFGKTPVAPD
                     ANIIELASKQLNLEPTTELAINIADKDESKSIAYTKTLLEKEGIETSEENIFVAAACK
                     EKGIAFLKGEAKVNIRKLASMPKPMSADENKFTVAVNGNKYHVEVSYGFDKDVNVKSV
                     KKVEENKNIISSNSTSSVDAENEVLAGISGNVFKIYVNEGEEVKSGQAIMVLEAMKME
                     IEVNAPKDGIILELCIKIGDTVNEGEVLAIYKN"
     gene            1907..3481
                     /gene="pckA"
                     /locus_tag="RJ267_000892"
     CDS             1907..3481
                     /gene="pckA"
                     /locus_tag="RJ267_000892"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HDV7388761.1"
                     /translation="MKKFDKLGLDNIKEIFHNLSYDELNAHEKANNEGLSTDNDTFCV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKVNQPITKELFDKLLTKAKQELSGKKIYVQ
                     DVFCGASLQSRKAVRFVTEIAWQAHFVKNMFIRPSQEELENFKADFIVYNACKCINED
                     YKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     HEPEIYGAIKRNALLENVVLRADKSVDYADASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     ITKCEFENFEVFDLAIPKALEGVESVLLNPINTWLDKNAYIATRDKLAHMFIQNFKRY
                     EDVKEGIEFSKFGPKI"
     gene            3491..4873
                     /gene="argH"
                     /locus_tag="RJ267_000893"
     CDS             3491..4873
                     /gene="argH"
                     /locus_tag="RJ267_000893"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HDV7388762.1"
                     /translation="MKNEMWSGRFSGASDELLKEFNASLNVDKTLFNEDIQGSIAHAT
                     MLESCGILKKEELDAIIKGLEQVRSEIEQGKFIFDIKDEDIHMAVEKRLSEIIGSEIG
                     GRLHTARSRNDQVATDFKLFVKKSHIELIKLLKELIQTMLEHAKVHKKTIMPSFTHLQ
                     HAQPVSFSFYILAYAFMLMRDIKRLQNSLELADFSPLGSCACAGTSYATNRELSAKIL
                     GFKDIMPNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSSSEFSFITISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDMQEDKEGIFDSV
                     KTAKDSLIILNAMLKEIQINKENMLNACKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEAQGIDISEIKDLSKIDPVFDEKAMELLNFEFSLNSKQSEGSSSIASVEKQI
                     QILEGFIQNL"
     gene            complement(4895..5998)
                     /gene="ychF"
                     /locus_tag="RJ267_000894"
     CDS             complement(4895..5998)
                     /gene="ychF"
                     /locus_tag="RJ267_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HDV7388763.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPERIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLSKKIEKLTKEAKANQKGAK
                     ESLELANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVIYGANVDENGISE
                     DNDYVKALKEYAKKNDHEVIKLCAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRT
                     AFAKLGLISYFTAGVVEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQY
                     KGENGAKEAGKLRLEGKDYIVLDGDVMHFKFNV"
     gene            complement(5995..7446)
                     /locus_tag="RJ267_000895"
     CDS             complement(5995..7446)
                     /locus_tag="RJ267_000895"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HDV7388764.1"
                     /translation="MKFELNDKKLDAIKADFELVFIQDKNLKIFNKEKDFFKLNNYKG
                     EGALLDLNNKKLYLELKSLAYEDIRLSLCTAYKTLEKLNIKSVKLPSIIGDCVVRSFA
                     SLVEGVLFGAYKFDKYKSEKKTSTLEKFIISNEELNGKKFNKDEAKIGLERGEILANA
                     TNFTKNIVNEIPEIYTPLKMAEDAQNLAKENKNIICKIYDEKFLAKEKMNAFLAVNHA
                     SVHPPRLIHLSYKAKNAKKRVVFVGKGLTYDSGGLSLKPADFMLTMKADKSGAAAAMG
                     IIKAVAELALDLEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSFAQDLKPDLLIDMATLTGACVVGLGEFTSAIMGNNEELQNDFYLSSKKSGEYTT
                     ILHFNPHLRELIKSNIADVSNTASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YTEKSWGYSSFGAGGAGVRMCVNYLIQILRKAK"
     gene            complement(7443..8039)
                     /locus_tag="RJ267_000896"
     CDS             complement(7443..8039)
                     /locus_tag="RJ267_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDV7388765.1"
                     /translation="MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHV
                     NLGFVIFIAGLGGFVGDQIYFYIGRYNKCYIQKKLKTQRRKFAVAHLLLQRFGWPIIF
                     IQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
                     AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS"
     gene            complement(8058..8606)
                     /gene="apt"
                     /locus_tag="RJ267_000897"
     CDS             complement(8058..8606)
                     /gene="apt"
                     /locus_tag="RJ267_000897"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HDV7388766.1"
                     /translation="MIKLTQEEQKYLLDSIRIIPDFPKKGIIFRDITTLLNNKEALNF
                     LLKHLKERYKDYNLDFIAGTESRGFIFASMICAKLNLPFVPIRKPGKLPFETFSCEYD
                     LEYGSDKVELHKDAFKNIQNARVLLVDDLIATGGTAIASYELIQKAGAKCVEACFLIN
                     LKDLNGANKLEKLTSVYSVLEI"
     gene            complement(8603..8935)
                     /locus_tag="RJ267_000898"
     CDS             complement(8603..8935)
                     /locus_tag="RJ267_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388767.1"
                     /translation="MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            complement(8935..9372)
                     /gene="rpiB"
                     /locus_tag="RJ267_000899"
     CDS             complement(8935..9372)
                     /gene="rpiB"
                     /locus_tag="RJ267_000899"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HDV7388768.1"
                     /translation="MLREKIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCD
                     YPDYAHLLAEKINKRSFGILICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDA
                     NVLALGGRLIGVELAIDIIEKFIQTPFEEGRHMQRIQKIEVKI"
     gene            9538..10092
                     /locus_tag="RJ267_000900"
     CDS             9538..10092
                     /locus_tag="RJ267_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HDV7388769.1"
                     /translation="MKLILIGSSTGGPNQLKFLLKDIDVKNTCVVIAQHMSASFIPSF
                     VGQFNKEAFSEVCLLNDKEILSNKIYICPKNTILSGNLNIVAAWQDVASSFKPSVDLL
                     FHSAVSLAKTNKILAIILTGMGDDGAKGLFELYKTGVRCLCENEADSVVYGMPKRAKD
                     MNPHLKPMSLKEIKKEIVNFIDQD"
     gene            10108..>10738
                     /locus_tag="RJ267_000901"
     CDS             10108..>10738
                     /locus_tag="RJ267_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheR"
                     /protein_id="HDV7388770.1"
                     /translation="MEKKITPSELELNEFIKIINEMSGIDLTDKKNILALKLNKFLEG
                     TNTKNFSEFLGKLKSNRQLKQETLDFVTIGETYFLRELAQLKEIIYYAKSLEKRVNIL
                     SAPCSSGEEVYSLALLAAQNFIKDMYILGVDINSSVIEKAKLGKYQGRTLQRLSESEK
                     RRFFLESEDKFYTINKNELCTCKFELCNVFEEKFSRLGKFDIIASRNMII"
BASE COUNT         3668 a         1548 c         1817 g         3705 t
ORIGIN      
        1 tttattcgtt ttatatcgcc tatagcaata attttggtaa tgtgttatca aatttttgta
       61 taataatgaa aaaatatttt tttaaggaaa aataatggct aaaaaattca tcgatgtaat
      121 ggatacaagc tttagggacg gttttcagtc tgtttatgga gctagggttt taatggatga
      181 tttttttcct gcagtagaag cagcaaaaga agcgggtatt actcattttg aatttggtgg
      241 tggtgctaga tttcaaagct tgtattttta tcttaatgaa gatgctttta ccatgatgga
      301 tagatttagg gctattgtag gaaaagatgc taatcttcaa actttagcaa gaggggttaa
      361 tactgttact ttagatactg gaagtagtga gcttattgat ttgcatgcaa aactttttgc
      421 aaaacacggt accacaacga taagaaattt tgatgctctt aatgatataa ataatttaaa
      481 atttagtggt gaatgtatag caaaacatgg attaaaacat gaaatcgcta ttaccttaat
      541 ggatctaccg ccaaattgca aaggtgctca tgatgtgcct ttttatgaaa aaattttgaa
      601 agaaatttta gcagcagaaa ttccttttca cagcatttgt tttaaagatg caagtggaac
      661 ttcaaatcca aataaaattt atgaaaccat taaaatggca agaaaaattt tacctcaaga
      721 tatgcatatt agacttcata cgcatgaaac tgcaggggtg agtatagcct gctatcttgc
      781 agcacttgaa gcaggtgttg atggtatcga tttggctgca gctcctgtaa gtggtggaac
      841 ttctcagcct gatattttaa ccatgatgca tgccttaaaa ggtaaagatt atgatttagg
      901 tggacttgaa gaagaaaaaa ttctaaaata cgaagaagtt ttaaaagatt gtttaaaaga
      961 gtatttttta ccccctgaag ctactatggt aaatccactt attccttttt ctcctatgcc
     1021 aggaggagct ttaacggcaa atacacaaat gatgagggat aataatattt tagataaatt
     1081 tccacaggtc attcatgcta tgagagaagt tgtagaaaaa ggtggatttg gtacttcggt
     1141 tactccagtt tctcaatttt attttcaaca agcatttaat aatgttatgt ttgggtcttg
     1201 gaaaaaaatc gcagaaggtt atggaaaaat ggtgcttggt tattttggaa aaactccagt
     1261 tgcacccgat gcaaacatta ttgagcttgc ttcaaaacaa cttaatttag aacctactac
     1321 agagcttgct ataaatatag ctgataaaga tgagagtaaa agtatagctt ataccaaaac
     1381 cttgcttgaa aaagagggta tagaaacgag tgaagaaaat atatttgttg cagcagcttg
     1441 caaagaaaaa ggtatagcat ttttaaaagg agaggcaaag gtaaatatac gcaaattagc
     1501 cagtatgcca aaacctatga gtgcagatga aaacaaattt accgtagctg taaatggtaa
     1561 taaatatcat gtagaagtaa gctatggctt tgataaagat gttaatgtta aaagtgtgaa
     1621 aaaagtagaa gaaaataaaa atattatttc ttcaaattca acaagttctg tagatgctga
     1681 aaatgaagtt ttagcaggta tttcaggtaa tgtctttaaa atttatgtta acgaaggcga
     1741 agaagtaaaa tcaggtcaag ctatcatggt tttagaagca atgaagatgg agattgaggt
     1801 taatgcccca aaagatggaa ttattttaga gctttgtatt aaaataggtg atactgttaa
     1861 tgaaggcgaa gtattagcta tttacaagaa ttaaagtgag ggaaaaatga aaaaatttga
     1921 taagttaggt ttggataata taaaggaaat ttttcataat ttaagttatg atgaattaaa
     1981 tgctcatgaa aaagcaaata atgaaggttt aagcacggat aatgatactt tttgtgtaga
     2041 tacagggatt tttacaggta gaagtcctaa agataaatat tttgtaaaac aagatccatc
     2101 tagtaaatat atagcttggg gaaaggtaaa tcagcctatt acaaaagaat tatttgataa
     2161 acttttaact aaagcaaagc aagaattaag cggaaagaaa atttatgttc aagatgtttt
     2221 ttgcggtgct tctttgcaaa gtcgcaaagc agtaagattt gttactgaaa ttgcatggca
     2281 agcgcatttt gttaaaaata tgtttattcg cccaagtcaa gaggaacttg agaattttaa
     2341 agcagatttt attgtttata atgcttgcaa atgcatcaat gaagattaca aacaagatgg
     2401 tttaaattca gaggtttttg tgatctttaa tgttgaagaa aatatagcgg ttattggtgg
     2461 aacttggtat ggtggagaaa tgaaaaaagg tattttttct atgatgaatt attggttacc
     2521 actagaaaat aaactttcta tgcattgtag tgcaaatgtc ggagaaaaag acgatgtggc
     2581 acttttcttt ggacttagcg gtacaggaaa aactacgctt tcaaccgatc caaaaagaag
     2641 actcataggt gatgatgagc atggctggga tgatgaaggt gtgtttaatt ttgagggcgg
     2701 ttgctatgca aaaacaatca atcttgatcc tgaacatgag cctgaaattt atggagctat
     2761 taaaagaaat gcacttttag aaaatgtagt tttaagagct gataagagtg ttgattatgc
     2821 tgatgcctca aaaacagaaa acacgagagt ttcttatcct atagagcata ttgaaaatca
     2881 tgagcctagt ctaaaagcag ggcatccaaa aaatattata tttttaagtg cagatgcttt
     2941 tggaatttta cccccggtaa gcaaactaag caaagagcag gctatgtatt attttttaag
     3001 tggctataca gcaaaagtag ctggaactga gcgcggtata acagagcctc aagcaacttt
     3061 ttcagcttgt tttggagaac cttttatgcc tttacatcca acggtttatg cgagattgct
     3121 tggtgaaaag attgaaaaac atgaagttaa tgtttatctt gttaatacgg gttggagtgg
     3181 cggaagctac ggtgtgggta aaagaatgag cattaaggct actagggctt gcattaatgc
     3241 cattctagat ggaagtatta caaaatgcga atttgaaaat tttgaagtgt ttgatttagc
     3301 tattccaaaa gctttagaag gtgtagaaag tgtactttta aatcctataa atacttggtt
     3361 agataaaaat gcttatattg caacaagaga taaattagca catatgttta tacaaaattt
     3421 taaacgttat gaagatgtca aagaaggcat tgaatttagc aaatttggac caaaaattta
     3481 aggcatttaa atgaaaaatg aaatgtggtc aggacgtttt agtggtgcaa gtgatgagct
     3541 tttaaaagaa tttaatgcaa gtttaaatgt agataaaact ttgttcaatg aagatataca
     3601 aggttctata gcacacgcta caatgcttga aagttgtggt attttaaaaa aagaagaatt
     3661 agatgctatt ataaaaggtt tagagcaggt tagaagtgaa atagagcaag gtaaatttat
     3721 ttttgatatt aaagatgaag atattcatat ggctgtagaa aagcgtttaa gcgagattat
     3781 aggtagtgaa attggcggaa gactacatac tgcaagaagt agaaatgacc aagtggctac
     3841 tgattttaaa ctttttgtaa aaaaatctca tattgaactc ataaagcttt taaaagaatt
     3901 gattcaaacc atgctcgaac atgctaaagt gcataaaaaa actattatgc caagttttac
     3961 acatttacag cacgctcagc ctgtgagttt ttctttttat attttagctt atgcttttat
     4021 gttaatgcga gatattaagc gtttgcaaaa tagcctagaa cttgcagact tttcaccact
     4081 tggatcttgt gcatgtgcag gaacaagcta tgctaccaat cgtgagttga gtgctaaaat
     4141 tttaggattt aaagatatta tgccaaatgc tatggatgga gtgagtgata gggattttgc
     4201 tcttgatttg ctttatgata tagcagttat ttttacacac acttcaagac tttgtgagga
     4261 aatgatttta ttttcaagct cagaattttc ttttataacc ataagtgata gtttttcaac
     4321 gggaagttct attatgcctc agaaaaaaaa tcctgatgtt tgtgagctta tacgtggaaa
     4381 aacagggcgt gtttatggaa atttgatttc tcttttaact ataatgaaag ctttaccttt
     4441 agcctataat aaagatatgc aagaagataa agaagggatt tttgatagtg taaaaaccgc
     4501 taaagatagc ttaatcatct taaatgcaat gctaaaagaa atacaaatta ataaagaaaa
     4561 tatgcttaat gcttgtaaaa aaggtcattt attggctacc gatttggcag attatttggt
     4621 gcgtgaaaaa aatattcctt ttagaaaagc acattttata gtgggaaatg ttgttgcaca
     4681 agctgaagca caaggtattg atataagtga aattaaagat ctttcaaaaa tagatcctgt
     4741 atttgatgaa aaagctatgg aacttttaaa ttttgaattt tctttaaatt ctaagcaaag
     4801 tgaaggctca agttctattg caagcgtaga aaagcaaatt caaattttgg aaggttttat
     4861 tcaaaattta taaatattgt ttaggctatt ttgcctaaac attgaattta aaatgcatta
     4921 catcgccatc taaaacgata tagtcttttc cttcaaggcg tagctttcct gcttctttgg
     4981 cgccattttc gcctttgtat tggatataat cttcatagga aataacttca gcttttataa
     5041 agcctttttc aaagtcattg tgaattacac ttgctgcttt tggtgctttc cagccttttt
     5101 tgattgtcca agaacgcact tcaactacac cagcggtaaa ataactgatc agtccaagct
     5161 tagcaaaagc agtgcgtatg atttgatcaa gaccgctttc gttaactcct agagaactta
     5221 aaaattcatg actttcttca tcgcttaatc ctactaattc ttcttcgatt tttgcacaaa
     5281 gcttgataac ttcatgatca ttttttttag catattcttt taaagctttt acataatcat
     5341 tatcttcact aataccattt tcatcaacat ttgcaccata aatcacttct ttagcagaaa
     5401 gcagtcttaa ttctttgatt aaggcttgat aaatttcact ttctttttca gggtaagaac
     5461 ttgcagctaa gcctttgttt aaatgatcaa gtaaggaatt tgcaagttcg agactttctt
     5521 tagcaccctt ttgattggct ttggcttctt tggtgagttt ttctattttt ttactcagtt
     5581 gttcaatatc tgctaaaata agctctgtat tgataatttc tacatcacgt aaaggatcaa
     5641 ctccaccttc aacatgggta atattttctt catcaaaaca acgtactata tgcaaaataa
     5701 cctcagtttc acgtatattt gaaagaaatt tatttcccaa gccttcgcct ttacttgcgc
     5761 ctttaacaag tccagcgata tctacaaatt ctattaaaga atgcataatt ctttcaggtt
     5821 ttactatttt agcaagttca ttaagtctta aatcaggaac ttcaaccatg gctttattag
     5881 gctctatggt gcagaaagga tagtttgcac tttgggcatt ttgtgcttta gttaaagcat
     5941 taaaagttgt tgatttgcca acatttggaa gtcctactat acctacgctt aaactcattt
     6001 agctttcctt aaaatttgaa ttaaataatt aacacacatt ctaactccag ctccacctgc
     6061 gccaaaacta gaatatcccc aagatttttc tgtataagca ggtcctgcta tatcaagatg
     6121 tagccattta tctttatatt ctttacgaat aaatttatct aaaaataacc ctgcggtaat
     6181 tgcacctccg tagcgactag aggcagtatt actaacatcg gcaatatttg attttataag
     6241 ttctcttaag tgagggttga aatgtaagat tgtggtatat tctccgcttt ttttagagct
     6301 tagataaaaa tcattttgca attcctcatt atttcccata atagcgcttg taaattctcc
     6361 aagtcctaca acacaagctc cagtaagagt tgccatatcg ataagtaaat caggttttaa
     6421 atcctgtgca aaagaaagac aatcagctaa aaccaagcgt ccttctgcat ctgtatttct
     6481 tacttctatg cttacacctt cacgactgat taacacatca tcaggcttat aagcattgcc
     6541 gcctatcata ttttcagttg cgcccaaaat gcaatgcact tctaaatcta aagcaagttc
     6601 agctacggct tttatgattc ccattgctgc tgctgcaccg cttttatcag ctttcattgt
     6661 aagcataaaa tcagctggtt ttaagcttaa tccaccgcta tcgtaagtta agccttttcc
     6721 aacaaataca acacgttttt ttgcattttt ggctttatag cttagatgaa tgaggcgtgg
     6781 tgggtgtacc gaggcatgat ttaccgctaa aaaggcattc attttttctt tggctaaaaa
     6841 tttttcatca taaattttac aaataatgtt tttattttct ttagctaaat tttgcgcatc
     6901 ttctgccatt tttaaagggg tgtaaatttc aggaatttca ttgactatat ttttagtaaa
     6961 atttgtagca ttggctaaaa tttctccacg ctctaaacct atcttagctt catctttatt
     7021 aaatttctta ccatttaatt cttcgtttga aataataaat ttttccaaag tacttgtttt
     7081 tttctcgctt ttatatttgt caaatttata agctccaaaa agtacgcctt caactaaaga
     7141 tgcaaaactt ctaactacac aatctcctat tatgctagga agttttacgc ttttaatatt
     7201 aagtttctca agagttttat atgctgtgca aagacttaat cttatatcct cataagcaag
     7261 acttttaagc tctaaataaa gctttttatt gtttaagtct aataatgcac cttcgccttt
     7321 gtaattatta agtttaaaaa aatctttttc tttgttaaaa atttttaaat ttttatcctg
     7381 tataaaaaca agttcaaagt ctgcttttat agcatctagt tttttatcgt ttaattcaaa
     7441 tttcatgatt ttttcctttt atctttaagt atagcttttt ccatttgttt aaaaccaaat
     7501 aataaaaggg ataaaaaagc tataataata atggctgcat aataccaatg ttcttcagcc
     7561 caagtcacca tcttccaaat ttgttctcca aaataccaag ctaaaagtat agtgattgat
     7621 gcccaaaccc aagcactaaa aagattgata atagcaaatt tttttgcact ataacgcgtg
     7681 attcctatac tcataggtat aatggttcta aagccataca tatagcgttg tataaaaata
     7741 ataggccaac caaaacgttg taaaagtagg tgtgctactg caaatttacg cctttgagtt
     7801 tttaattttt tttgtatgta gcatttatta tatcttccta tatagaagta aatttgatcg
     7861 cctacaaaac cgccaagacc tgctataaat ataacaaagc ctaaatttac atgtccttga
     7921 tgggcaaaaa taccagctaa aattaaagct aactctcctt ctaaaatgca ccataaaaaa
     7981 ataataatat aagctagatc tttgtattgg taaagtaaat tttttaaaaa ttcttccatt
     8041 tgtacctttc tatagtttta aatttctaaa acactataaa ctgaagtaag tttttcaagt
     8101 ttatttgctc catttaaatc tttaagattt attaaaaaac aagcttcaac acattttgct
     8161 ccagcttttt gaatgagttc atatgaagct atagctgttc cgccagttgc tattaaatca
     8221 tctacaagta aaactcttgc attttgaata tttttaaatg catctttatg aagttctact
     8281 ttatcgctgc catattcaag atcgtattcg cagctaaagg tttcaaaagg gagttttcca
     8341 ggttttctaa taggcacaaa aggaagatta agttttgcac aaatcataga tgcaaagata
     8401 aatcctctgc tttctgttcc tgctatgaag tctagattgt aatctttgta gcgttctttt
     8461 aaatgtttaa gtagaaaatt taaagcctct ttgttattta gtagagtggt aatatctcta
     8521 aaaataattc ctttttttgg aaaatcagga ataatcctaa tgctatcaag caggtatttt
     8581 tgttcttctt gtgttagttt tatcataata atgcctcaat ttttgcttct aattctttaa
     8641 ttctttgtct tagtttgtca ttttccaagc gatattgaga atttctggtt cttaaagatg
     8701 taaggtctgc tttgatttta ttaagttctt ctgtgagtat atctatattt ccaagacttc
     8761 tttgaagttg aatttgtagt tttctaatga caatctcagt atcatcaaga ttgtttttga
     8821 taaaatcttt tgatgttttt tctttattaa gtagagtttt atagtaaaac aacattacaa
     8881 taagatagat agttgcacaa atcaatatag ttaaaacaag ccagtttgta aacattatat
     8941 ttttacctca attttttgaa ttctttgcat atgtctccct tcttcaaaag gagtttgaat
     9001 gaatttttct ataatatcta tagctaattc aaccccaatt aatcttccgc ctaatgccaa
     9061 aacattggca tcattatgcc ttcttgcaag ttctgcactt aagctttcgt ggcataatgc
     9121 acaacgaatg tttttatgac gatttgctgc aatagaaatt ccaattccac ttccacaaat
     9181 aagaatgcca aagctccgtt tgtttatttt ttcggcaagt aaatgcgcat aatcaggata
     9241 atcgcagctt gcgcaagtgt ttgttcctaa atcgttaaaa attatatttt tttcttttaa
     9301 aaatacgcaa attttttctt ttaattcaaa accagcatga tcactagcaa tataaatttt
     9361 ttccctaagc attggtttcc taattactat ataaaataag ataaaaacct aatcttatca
     9421 tattaaatca taaaaacagc ttttctttgt tttaaaaata agctttattt ttctttatat
     9481 atgttagaat catgtgacaa gaaaaataaa atttcaataa attaagagga gaagaaagtg
     9541 aagctcatac tcataggatc ttcaacaggt ggtcctaatc agcttaaatt tcttttaaag
     9601 gatattgatg taaaaaatac ttgtgtagtt atagctcagc acatgagtgc cagttttatt
     9661 ccatcttttg tggggcaatt taataaagaa gcttttagtg aagtgtgctt attgaacgat
     9721 aaagagatat taagcaataa aatttatatt tgccctaaaa atactatttt atctggaaat
     9781 ttaaatattg tagccgcttg gcaagatgtg gcttcaagct ttaaaccgag tgtggattta
     9841 ctttttcatt ccgctgtttc tttggcaaaa acaaataaaa tacttgctat tattttaacg
     9901 ggcatgggag atgatggcgc aaaaggttta tttgagcttt ataaaacagg agttagatgt
     9961 ttatgtgaga atgaagcaga tagcgtcgtt tatggtatgc caaaaagagc aaaagatatg
    10021 aatccgcatt taaaacctat gagcttaaaa gaaattaaaa aagaaattgt aaattttatt
    10081 gatcaggatt aataaaagga aaattgcatg gaaaaaaaaa taactcctag cgaattggaa
    10141 cttaatgaat ttataaaaat tatcaacgaa atgagtggta ttgatttaac cgataaaaaa
    10201 aatatactag ctttaaagtt gaataaattt cttgaaggaa ctaatactaa aaatttttcc
    10261 gaatttttgg gaaaattaaa aagcaataga caacttaaac aagaaacttt agattttgta
    10321 accataggtg aaacttattt tttaagagaa ttggctcaat tgaaagaaat aatttattat
    10381 gccaaaagct tagaaaagag agtaaatatc ctaagcgccc cttgttcaag tggagaagaa
    10441 gtatattctt tggcattatt ggctgcacag aattttatta aagatatgta tattttaggc
    10501 gttgatatta attcaagtgt gattgaaaaa gcaaaacttg gaaaatatca aggaagaact
    10561 ttacagcgat tgagcgagag tgaaaaaaga aggttttttt tagaaagcga agataaattt
    10621 tatactatta ataaaaatga gctttgtact tgtaaatttg aactttgcaa tgtttttgaa
    10681 gaaaaatttt caagattggg aaaatttgat attatagctt ctagaaatat gattattt
//
LOCUS       DAPIWQ010000050        10561 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.050, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000050 DAPIWQ010000000
VERSION     DAPIWQ010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10561)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10561)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10561
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.050"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..985
                     /locus_tag="RJ267_000902"
     CDS             <1..985
                     /locus_tag="RJ267_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HDV7388771.1"
                     /translation="FYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPYVLPISLIFA
                     LVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFTSFAYANDYKR
                     NILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNINDLNLSSFASAKNA
                     HFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPKIIEGVASNSDYSI
                     SDALESFELFKAQNVNTDTLKINLYKFVFTPFFAPFLMLIMYYFFPVIARFFNLAFVT
                     FIAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYKHR"
     gene            1029..2237
                     /gene="lysA"
                     /locus_tag="RJ267_000903"
     CDS             1029..2237
                     /gene="lysA"
                     /locus_tag="RJ267_000903"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HDV7388772.1"
                     /translation="MDYKQLKQEFNTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAV
                     KANSNLSLLQMLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEI
                     DIARKMYLYAKNSSFLEPVGVHFHIGSQLLDISPIHEAAAIVAKLVRELKALQIDLKF
                     FDIGGGLGVAYEKNECEPDLYDYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVL
                     YEKQNKTKRFVVVDGAMNDLIRPSLYEAYHEIILPYNQGEESLCDVVGGICESGDFFA
                     KARSLPSTQSDDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFEDQ
                     IALEEKFLKA"
     gene            2239..3006
                     /locus_tag="RJ267_000904"
     CDS             2239..3006
                     /locus_tag="RJ267_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HDV7388773.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYLIITNNTK
                     KLDFLEKLQQKGLVIKENAYIDPFSVLKHLLRPCKVAAFGADEFVKSLENLGFELDFV
                     NPSAVLVASYDDFKFKDFATMIELARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRRQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKDLKCQI"
     gene            2994..4067
                     /gene="pheA"
                     /locus_tag="RJ267_000905"
     CDS             2994..4067
                     /gene="pheA"
                     /locus_tag="RJ267_000905"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HDV7388774.1"
                     /translation="MPNLEEFRNKIDAVDDKILDLLNERMTYVKSIGELKQSSGGSIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSRIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            4057..5151
                     /locus_tag="RJ267_000906"
     CDS             4057..5151
                     /locus_tag="RJ267_000906"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDV7388775.1"
                     /translation="MKFNEFLNNLSNYEPGKDIEVIAKEYGVKEVIKLASNENPFGTP
                     PKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCL
                     PNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPFNVSNLALKAAVAAMDDDEFTE
                     KTLENNFSQMELYKEFAKKHNIKIIDSYTNFITYFFDEKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            5203..6885
                     /gene="fliF"
                     /locus_tag="RJ267_000907"
     CDS             5203..6885
                     /gene="fliF"
                     /locus_tag="RJ267_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HDV7388776.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIIVVVGFLVFLALFHG
                     SGSNANNGYAVLVENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            6885..7913
                     /gene="fliG"
                     /locus_tag="RJ267_000908"
     CDS             6885..7913
                     /gene="fliG"
                     /locus_tag="RJ267_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HDV7388777.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            7921..8751
                     /gene="fliH"
                     /locus_tag="RJ267_000909"
     CDS             7921..8751
                     /gene="fliH"
                     /locus_tag="RJ267_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HDV7388778.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENTNISLNDEKPVEENQVIASTQAVMETQIPTFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFTKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            8744..>10561
                     /locus_tag="RJ267_000910"
     CDS             8744..>10561
                     /locus_tag="RJ267_000910"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HDV7388779.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSKNGGHLSS
                     NLGAVELSIAMHLVFDAKKDPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFPCVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHAQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDTKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIALRYPRGSFILDKEFNPCEIKLGKAQWLVKNNSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINN
                     FLQKYDLHVKVVSFEYEDKFIEHGKTSEVEKNLEKDVNSL"
BASE COUNT         3727 a         1309 c         2064 g         3461 t
ORIGIN      
        1 tttttattgc ggtattgatt tgctcttaaa ttttaaagat ctaccaaaag ccgcaaatct
       61 tgatttgctt tatgttatgt ttttatcttt ttcggcagtg ccttatgtat tacccatttc
      121 tttgattttt gctttggtag tttctttgat ttctatgatc agagcaaatg aatttgtaag
      181 tctttatgcg ttaggactga gtagaaatta tgttatttta tttccttttt tatgggcttt
      241 atttttttgt tgtatttata taggattgaa ttttacttct tttgcttatg caaatgatta
      301 taagagaaat attttgaaaa atggcactat tatgaatcaa agtggagaag tgtttttgaa
      361 atttaacaat aattttgttt atatttcaaa gataaacaat ggacaaaata gtgctcaaaa
      421 tataaaaatt tttaatatta atgatttaaa tttaagctct tttgcaagtg ctaaaaatgc
      481 ccattttgaa ggtgaaagct ggattttgcg agatggtaat attacattat tacctaaaaa
      541 ttatgaactt gctaatgatg gtttaaagat acaagatttc tccgagctta aatcacttga
      601 gggttttaaa ccaaagatta tagaaggggt tgctagtaat agtgattatt caatatctga
      661 cgcacttgaa agttttgagc tttttaaggc gcaaaatgtc aatacagata ctcttaaaat
      721 caatctttat aaatttgttt ttactccttt ttttgcacca tttttaatgc ttattatgta
      781 ttattttttt cctgtaatag caagattttt taatcttgct tttgtaactt ttatagcttt
      841 tgtagtgact ttgatgattt ggggagtctt gtttttgctt actagattaa gcgaaaatag
      901 tgtgattgca agtgaaattg gcattgtagt gcctattata attttgggtt gtttaagtgc
      961 ttatatgtat tataagcatc gataaattaa gctttgtgta gtaaaattat aaaaattaaa
     1021 ggttaaatat ggattataaa caattaaagc aagaatttaa tactcctttt tatatttaca
     1081 attttgattt cataaaagag cgttttttaa atctcaaaga ggcttttaag gcaagaaaat
     1141 ctcaaatttt ttacgctgta aaagccaatt caaatttaag tttgttgcaa atgcttgcaa
     1201 atttagatag tggatttgat tgtgtaagta taggcgaggt aaagcgtgcc ttaaaagcag
     1261 gagcaaaagc ttataagatt atttttagtg gagtaggaaa aaccaaagaa gagttaagac
     1321 aagctttaga atatgatatt ttatatatta accttgaaag cgaagctgaa atgatgcttt
     1381 tagaaagtgt ggctaaagaa cttaatctaa aggcaagaat cagtattcgt gttaatccaa
     1441 atgttgatgc aaaaactcat ccttatattt ctacaggatt aaatgaaaat aaatttggtg
     1501 ttgaaattga tatagcaaga aaaatgtatc tttatgcaaa aaattcatct tttttagagc
     1561 ctgttggagt gcattttcat ataggttcgc aacttttaga tatttctccc attcatgaag
     1621 cagcagccat tgttgcaaaa cttgtaagag agttaaaagc cttgcaaatc gatcttaaat
     1681 tttttgatat aggcggtggt ttgggtgtgg cttatgaaaa aaatgagtgc gaacctgatc
     1741 tttatgatta tgcacaaggt atattagcac aacttcatgg gcttgattta actataggaa
     1801 tggagcctgg aaggtatcta gttgctaaaa gtggagaatt tgtttgttca gtgctttatg
     1861 aaaaacaaaa taaaaccaag cgttttgttg tagtagatgg agcgatgaat gatcttatac
     1921 gcccaagttt atacgaggct tatcatgaaa taatcttacc ttataatcaa ggcgaagaga
     1981 gtttatgtga tgttgtaggt ggaatttgtg agagtgggga cttttttgct aaagcaaggt
     2041 ctttgcctag cactcaaagt gatgatataa tggttattaa aaatactgga gcttatggtt
     2101 ttagcatgag tagtaattac aatactcgta ataaagtttg cgaattagcc cttgaagaag
     2161 gacaggtaag attgatccgt caaagagaaa attttgaaga tcaaatcgct ttagaagaga
     2221 aatttttaaa ggcttaaaat gtttttttta gatgttcaag ggactttaat ttctgatcat
     2281 gataaatctt taatccatgg tgctaaagaa ctgatcgatt ttttaaatgc aaaaaatctt
     2341 ccttatctta tcatcactaa caatacaaaa aaacttgatt ttttagaaaa attacagcaa
     2401 aaaggattgg ttataaaaga aaatgcttat attgatcctt tcagcgtttt aaaacacctt
     2461 ttaagacctt gtaaagttgc ggcttttggt gcagatgagt ttgtaaaaag tcttgaaaat
     2521 cttggttttg agctcgattt tgtaaatcct agtgctgtgc ttgtggctag ttatgatgat
     2581 tttaaattta aagattttgc cactatgata gaattggcta gaagagaagt tagatttata
     2641 gctatgcacg aaactagtat ttataaaaaa gatggtaggc cttatcctgg tgtaggtagc
     2701 attatggcta tgcttaaaaa tgctattgat tttgaatacg aggttgtggg taagcctagc
     2761 attgcttttt ataaagaagc tttaaattta ataagaagac aaaattcaaa aattgatttt
     2821 gaagatatta aaatcattag tgatgatttt aggggtgact tgcttaaggc aaaagaactt
     2881 ggcatgaaaa ccttgctagt tttaagcggc aagataagcg acacaaaagg gcttgatacg
     2941 gatttgcttg atggagttta tcctagtgtt tttgagtttt taaaggatct aaaatgccaa
     3001 atttagaaga atttagaaat aaaatcgatg cggttgatga taaaatttta gatcttttaa
     3061 atgaaagaat gacttatgtt aaaagtatag gtgagcttaa gcaaagtagt gggggaagta
     3121 tttatcgtcc tgagcgtgaa agagccatta tcaatcgttt aaaaaatgca aatttaggac
     3181 ttttagatca aaatgccata gaggcaattt atcaagaaat ttttgcagtt tcaagaaatt
     3241 tagaaatgcc tcaaactata gcttatttag ggcctgaagg aacttataca catcaagcag
     3301 caagaagtcg ttttggtgcg atgagtcgtt atatagcctt ggctaatatc gaagatgttt
     3361 ttaaagagtt aagcaacaaa gaagcaaaat atggtgttgt acctatagaa aataataccg
     3421 aaggtgcagt gggcattact ttagattgtc taggtaagta taatgagctt aaaatttttg
     3481 gcgaaattta tatggatatt catcattctt ttgtaggaat taatgaaaat ttaaaagaaa
     3541 tcaaacgcat ttattcgcat ccgcaaggtt ataatcaatg tcgtaaattt ttagaaagtc
     3601 atgaacttag tgctatagaa tttgttcctt caaaatctac agctaatgca gcttacctag
     3661 cttcgcaaga taaatatgcg gcagcaattt gttctagaat agcggctaag ctttataatg
     3721 tgcctgtact ttttgataaa atagaagata atgcagccaa taaaacaaga tttttaattt
     3781 taagcgatat taaaaatcct aaaatgccaa attgtaaaac ttctatttta gcacacacag
     3841 cacataaacc tgggggactt agctttttat tagagcagtt taaaaaagaa aatatcaatc
     3901 ttactaagct tgaatctcgc cctgtaaaat caaaagaatt tttacacagt ttttatatag
     3961 attttgaagg gcatattgat gatgaaaatg taaaaaaagc cttaaaagat atacaagaga
     4021 ttgtttggct tggatcttat ttatcaggag aaaaagatga aatttaatga atttttaaat
     4081 aatttaagca attatgaacc cggcaaagat atagaagtta ttgctaaaga atatggcgtt
     4141 aaagaagtga taaaattagc aagcaatgaa aatccttttg gcacgccacc aaaagctata
     4201 gaatgtttaa gacaaaatgc aaacaaagcc catctttacc ctgatgatag tatgatagaa
     4261 cttaaaagca cattggctca aaaatacaaa gttcaaaatg aaaatatcat tatcggtgca
     4321 ggcagtgatc aagtgattga atttgctata cattctaagt taaattctaa aaatgctttt
     4381 ttgcaagctg gagttacttt tgctatgtat gaaatttatg ccaaacaatg tggtgcaaag
     4441 tgttataaaa ctcaaagtat tactcataat ttagatgagt ttaaaaaact ttatgaaacg
     4501 cacaaagatg aaattaaact tattttttta tgcttaccaa acaatccttt aggcgagtgt
     4561 ttggatgcaa gtgaggcgac cgagtttatt aaaggtgtaa atgaggattg tttagttgtg
     4621 attgatgcag cttataatga atttgcaagt tttaaagata gcaaaaaaca tttagaacct
     4681 tgtgaattga ttaaagaatt tgacaatgtg ctttatttgg gaactttttc taaactttat
     4741 ggattaggag gcttacgcat tggttatggc atagctaatg ctaatattat tagtgcattt
     4801 tacaagcttc gtgctccttt taatgtgagc aatcttgctt taaaagcagc agttgcagca
     4861 atggatgatg atgaatttac tgaaaaaact ttagagaata atttttctca aatggagctt
     4921 tataaagaat ttgctaaaaa acataatatc aaaattatcg atagttatac aaatttcatc
     4981 acttattttt ttgatgaaaa aaatagtaca gatttgtctg aaaaattgct taaaaagggt
     5041 ataataataa gaaatttaaa aagctatggt ttaaatgcta tacgcattac tataggaaca
     5101 tcttatgaaa atgaaaaatt ttttacagaa tttgataaga ttttaagata gataaatcaa
     5161 ataaaaatat gtaaaattcg ctaaactaag ggatgagaat taatggattt taaaaatatg
     5221 cttcatcaaa ttgggcaact ttatcaaaat ttaactcgca agcagcgtat agtgattgct
     5281 gcatctatta tagttgtggt tgggtttttg gtttttttag ctttatttca tggaagtggt
     5341 agtaatgcaa ataatggata tgcagtttta gttgaaaatg taagcccaag ttcttctgct
     5401 gcaattgtag ctaaacttga acaaaataat attccctata aattagaaag tgaaaataaa
     5461 attttagttc cacaagatca ggtttatcgt caaagaatgt ttattgcaag cgaaggtctt
     5521 ataaaagata gtcgcgtggg ttttgaagct tttgatactc aagcttttgg agctacaaat
     5581 gaagagcaaa aggtaaaata ccaaagagcc atagaaggcg aacttgcaag aactattgag
     5641 actttagaac ctattcgtag cgctgttgta cacatagcat ttcctaaaga tagtgttttt
     5701 actgaaaggc aaattccgcc tacagcttca gttgttgtta atgttcgcga aggcttaaag
     5761 cttactagaa aacaaattga tggtataaaa aatattgttt cagcggcagt tccaaaactt
     5821 actaaagaaa atgttaagat tagtgatcaa agtggtgtgc ctttagatga gcaagaagca
     5881 tatgaagatg acttggttcg tgcgcaaatt aaatttaaaa gtgatcaaga aaaagcttta
     5941 gaagataaga ttatagaaaa tttagctcct tttgcaggtg gcatggataa agtaaaagtg
     6001 agtgtaaata tagattttga tttttccaag caagaatctc aaagtgaaat ttatgatcca
     6061 aatcctatag tacgtagtga gcaaacttta aacgaggaaa gaacaggtag aaaagatcca
     6121 gaaattcagg gtgttccagg tgctgtttct aatataggtc ctgttgaagg acttgacaat
     6181 aagggtcaaa ttgacactta taaaaaaaat caagttacta caaataatga actttctaaa
     6241 actatcacaa ataccaaaaa acaatttgca acagttttac gcacttcagc agctgttact
     6301 atagatggaa aatatcaaga tgtggttgat gaaaatgggg atgtgaaaag cgaatatgtc
     6361 ccattgacta aagaagagct tgcaagtgtt gagagtatag ttaaaaatac tattaatttt
     6421 agcgctacta gaggtgatag tgttgtggtg caaaatttac catttcatcg tgagtcgatt
     6481 agagttgaga gtaaagttaa aactttttac aatcgttttg ttgagccatt tattccgccg
     6541 gttaaatact ttattgcagc gattttactt tttatttttt acaaaaaagt tattgctcca
     6601 tttactcaaa aaatgcttga agatgtcgca gcacaagagg aaatgcagca aggtccaaat
     6661 gctgttttag atgatgctga agatgcttta gagaaattta atgcagcaag gaaaaaagtt
     6721 gaagaacaac ttggttttgg ggataacttc aatgaagatt ctatccagta tgaggttttg
     6781 cttgaaaaat tgcgtggttt ggtaagtgat aaaggtgagg aaattgcagc acttttgcaa
     6841 aacttaattc aaaatgatag cgaatttggc gaaaaggata tgtgatgata aagctaagtg
     6901 aagaacaaaa aatggtctat gatgatttat cgatgcctga gaaggtagcg atatttctta
     6961 tacaacttgg cgaagatgca accacttctg tgttttcaca tatggaaatt gatgtaatca
     7021 cagaaatttc acgttatatt gctatggcta aaaatgttga tagatctgta gctactgcag
     7081 ttttagaaga attttacact ctgcttcaat caaatcaata tattaaaagt ggtggtttgg
     7141 aatatgctaa agaaatactt tttcgtactt ttggaccaga gattgcaaat aaaattcttg
     7201 aaaaactcac taaaagtatg gagaataatc aaaattttgc ttatttggcg caaattaaac
     7261 cacagcaact tgcagacttt attaccaaag agcacccaca aaccatcgct cttattttgg
     7321 cacacatgga ttctattcat gcggcagaaa ctttagagta ttttagcgat gaattaaggg
     7381 ctgaggtggt tataagaatg gcaaatcttg gtgatatttc tccaagtatt attaaaagag
     7441 tttctgcagt gctagaaagc aagcttgaaa gtcttacctc ttataaggtt gaagtgggcg
     7501 gcccaagagc agtagcagaa gtgcttaatc gtttgggtca aaaagcaagc aaatcaacca
     7561 ttacttatat tgaacaaagt gatgaacgct tagcagagac tattaaagag cttatgttta
     7621 ctttcgatga tatacaaaaa cttagcactc aggctataag agaaatttta aaagtagccg
     7681 ataagcgtga tttaatgata ggtttaaaag gtgcaagtga agagttaaag caaaaattct
     7741 tagccaatat gtctacgcgt gcaagcgaag cttttcttga agaaatgggt tttttgggtg
     7801 ctgtgcgtgt taaagatgtt gaagatgcac aaagaaaggt tgttgaagtg gtgcaaaaac
     7861 ttgcagaaca aggtcttgtt caaacaggcg atgcggatga aatgatagag taggtgagag
     7921 atggttaatc gtagtaatgt aatttctggt ggggcttctg atcagcatgt tgttgaagga
     7981 tatcgtttta aagttatttc agaatttgat aatcatacag gtgaaaaaaa acatactcaa
     8041 actccagatg aagaaaatac taatatatct ttaaatgacg aaaaaccagt cgaagaaaat
     8101 caagtcattg cctctacaca agctgttatg gaaactcaaa ttccaacatt tcaaccaagc
     8161 tttgttgaag atttacttaa aaaaacagat gaaatgtcaa gcaatattat taaacttcaa
     8221 atgcaaatag aaagccaaga gaatgaattt aataaccgct taaattcaga acttgaaaat
     8281 gctaaagaaa aatttaccaa agagggttat gagaaagcaa aagaagaatt tcaaaaggaa
     8341 ttgagtgatt ttaaagataa gtatttaaaa agtatagcca aacttgataa tgcttgcgaa
     8401 aatcttgaaa atttcataga aaaaaatgag aaagaattag cagatactgc tatagatatc
     8461 gctaaagaag taatcttaaa agaacttgaa ctaaattcaa gtaagatagc ttatgctttg
     8521 gctaaagatt taatcggtga gcttaagggt gctagtgcaa ttgagcttaa ggttaatgca
     8581 gaggattatg agtatttaaa agagcaattt gatcagaatg ctcatattaa aataagtctt
     8641 gatgatgcaa ttagcaaagg aagtgttgtt attataagtg acgcaggcaa tatagaatcc
     8701 aatcttaact ctcgtctaac taaaattaaa aaaatggtga ataatgagta aaaaatttgc
     8761 ccatactcaa gaagagttag aaaagctaag tttaaaagaa ttagaaaatt tagcagcatc
     8821 tatgcgtgaa aaaatcatac aagttgtgag taaaaatggt gggcatttaa gttcaaattt
     8881 gggtgctgta gaacttagta tagcaatgca tttggttttt gatgcaaaaa aagatccttt
     8941 tatttttgat gtgtcgcatc agtcttatac acacaagctt ttaagcggaa aagaagaaat
     9001 atttgatact ttaagacaaa tcaatggttt aagtggttat acaaaaccta gcgagggaga
     9061 ttattttgta gcagggcatt ctagtacctc tatttctttg gcagtaggtg cttgtaaggc
     9121 tattgcttta aagggtgaaa agcgtattcc tgttgctttg attggagatg gtgctttaag
     9181 tgcgggtatg gcctatgagg ctttaaatga attgggtgat tctaaatttc cttgcgtaat
     9241 acttttaaat gataatgaaa tgagtatttc aaaaccaatt ggagcaattt caaagtatct
     9301 ttctcaggct atggcaacgc agttttatca aagttttaaa aagcgtattg ctaaaatgtt
     9361 ggatatattg cctgatagtg ctacttatat ggccaagcgt tttgaagaga gttttaaact
     9421 tattacccct gggcttttgt ttgaagaatt agggcttgaa tatatagggc ctattgatgg
     9481 acataattta ggtgaaatta tttctgcatt aaaacaagca aaagctatgc aaaagccttg
     9541 tgtgatacat gctcaaacca taaagggtaa aggctatgct ttagctgaag gaaaacatgc
     9601 taaatggcac ggggtgggag cctttgatat agatagtgga gagagtgtta aaaaaagtga
     9661 tactaaaaaa tctgctactg aaattttttc taaaaatttg cttgatttag cctcaaaata
     9721 tgaaaatatt gttggggtta cggcggctat gccaagtgga acaggtcttg ataagcttat
     9781 agaaaaatat ccaaatcgtt tttgggatgt ggctattgca gaacagcatg cagtaacttc
     9841 tatggccgct atggcaaaag aaggatttaa accttttatt gcaatatata gcaccttttt
     9901 gcagcgtgct tatgatcaag tgatccatga ttgtgcgatt atgaatttaa atgtggtttt
     9961 tgctatggat agggcaggga tagtaggcga agatggggag acgcatcaag gtgtttttga
    10021 tcttagtttt ttagctcctt tgccaaattt cactctttta gccccaagag atgaacaaat
    10081 gatgcaaaat ataatggagt atgcttattt acatcaagga cctattgctt tgcgttatcc
    10141 tagagggagt tttattttgg ataaagaatt taatccttgt gagataaaac ttggtaaggc
    10201 acaatggctt gtaaaaaata atagtgaaat tgctttttta ggttatggac aaggtgtggc
    10261 aaaagcgtgg caagtcttaa gagccttgca agaaatgaat aataatgcta atttgattga
    10321 tttaattttt gctaaacctt tagatgaaga gcttttgtgt gagcttgcta aaaaaagtaa
    10381 aatttggttt atttttagtg aaaatgttaa aattggcggt atagaaagtt taattaataa
    10441 ttttttacaa aaatatgatt tgcatgtaaa agttgttagc tttgaatatg aagacaaatt
    10501 tattgaacat ggaaaaacaa gtgaggtgga aaaaaatcta gaaaaagatg tcaatagttt
    10561 g
//
LOCUS       DAPIWQ010000051        10429 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.051, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000051 DAPIWQ010000000
VERSION     DAPIWQ010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10429)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10429)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10429
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.051"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            187..459
                     /locus_tag="RJ267_000911"
     CDS             187..459
                     /locus_tag="RJ267_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HDV7388780.1"
                     /translation="MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGIVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIINLNGGADEFAKL"
     gene            446..997
                     /locus_tag="RJ267_000912"
     CDS             446..997
                     /locus_tag="RJ267_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HDV7388781.1"
                     /translation="MQNYKKLGIEHFYKKDFKTAKMYFSMAYEKRKNKRLLNFICLCD
                     LALKSPKEASLLFDFYIEHYKISSIDKDLEEILSTIEFKKQENKQENEFEDGHALNYQ
                     DFLKSEEELGFQKSFENIINSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIENVMPH
                     FWANDRFIKLQEKLMGFKSEIKT"
     gene            981..2264
                     /locus_tag="RJ267_000913"
     CDS             981..2264
                     /locus_tag="RJ267_000913"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HDV7388782.1"
                     /translation="MKLKLENSFITDNTLECEKECFFLQTTQNAKFHAQALEKGAKII
                     DVNECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQ
                     DHLDFHGTFENYKEAKELFFTDESLKFINKDALAIKFNVRNAFTYGIENPALYQIKAY
                     SLEEGISTIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFG
                     GVCGRVEQVAKGVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGKIV
                     EHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDL
                     VVILGKGDETTQEIKGIKYPFSDKVVVNEILKNQG"
     gene            2268..2579
                     /locus_tag="RJ267_000914"
     CDS             2268..2579
                     /locus_tag="RJ267_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HDV7388783.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKV
                     SANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMK
                     L"
     gene            2576..3670
                     /locus_tag="RJ267_000915"
     CDS             2576..3670
                     /locus_tag="RJ267_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HDV7388784.1"
                     /translation="MKKILIICMLFTLSFGIERPKFEDFLAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNAKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWVGI
                     WDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDVYWGDIGVDFVVRENKIYVNNVRKNPQFLINDQVISVDGLPANDLRKLNEKI
                     LFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFNLPDSKPKPKITNFTSNLGLTVNA
                     SLVVTKIDPKSKVSNAGFMVGDKILRVNNIILNNFKELQNILSAGNDFSILIERKSTK
                     LPLSNFNNELGGNANSGGDGKFQFFIRLTK"
     gene            3667..4512
                     /locus_tag="RJ267_000916"
     CDS             3667..4512
                     /locus_tag="RJ267_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HDV7388785.1"
                     /translation="MNLKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQL
                     LLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET
                     TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRL
                     SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDV
                     TTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLSECEQDLEKLNEKLAQMIQNL
                     IIQYL"
     gene            4523..6421
                     /gene="tkt"
                     /locus_tag="RJ267_000917"
     CDS             4523..6421
                     /gene="tkt"
                     /locus_tag="RJ267_000917"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HDV7388786.1"
                     /translation="MNIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY
                     HLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHP
                     EISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYE
                     EINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDP
                     NISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFK
                     GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFVLSRQKLKALNEP
                     VFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFE
                     KQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFERFGFSVSK
                     LVNFILSK"
     gene            6423..7532
                     /locus_tag="RJ267_000918"
     CDS             6423..7532
                     /locus_tag="RJ267_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7388787.1"
                     /translation="MNTNFKFQNNTLFIFGIWDKTSIYKLKIKDFLALIQSKEVIFDF
                     KDLKAIDTAGVRFFLALENDLKNKNIKITKEGLNSRFQTLFELCEKNYQRLGKTKKSH
                     QNFSEYFIDLGKLSLELLKILRKFINFTGAFFTSLFLCLKNPKNFRFIAFLYHIENSA
                     FKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLMGISATRELAPLIAAIVIAG
                     RSASSYTAQIGVMKITDEIAAMNTMGFRSFEFIVIPRVMALVVAMPLIVAISDAISII
                     GGMMVAKLNLDISFAEFLRRFREAVDIKHIFIGLAKAPIFGFLIGLIACFRGFEVKNT
                     TQSIGIYTTKSVVNAIFWVIAFDALFSVILTSTGI"
     gene            7533..8255
                     /locus_tag="RJ267_000919"
     CDS             7533..8255
                     /locus_tag="RJ267_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7388788.1"
                     /translation="MVIKAQNIITKFGEKIVHDGVSFEIKKNEIFGILGGSGSGKSVL
                     LKQMLMLEHFDDGEYEILGYKLKNINEEDALALRKKWGVVFQFAALFSFFNVYENIAI
                     PLKEYTHLDENSIQELVLMKLKMVGLNESVLKQFPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKV
                     GFCGTYEELRLQNERLFKRFME"
     gene            8258..9148
                     /locus_tag="RJ267_000920"
     CDS             8258..9148
                     /locus_tag="RJ267_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HDV7388789.1"
                     /translation="MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYEIHT
                     QESVAGLGIKAPVRLLGVEVGSVEEISIYNQDELGVNIRIKVKNNTPIKEDTFATLQL
                     QGITGLKFIQLQGGSKNSKDLVSMQGKLPVIPFKESFLATIDRQSEHIFSLVKTADDK
                     SKELLSEKNLKNLEILLQNLAELSANLNANSKNLSLNLSNASLKIGKMADNISLSAQN
                     FNSSLKNIKESTMILKNFIKKADEKLNTYDDIKASLMQNLELFKRVLIESNILIENLQ
                     NSPADLIFKETKPKLGPGEK"
     gene            9148..9747
                     /locus_tag="RJ267_000921"
     CDS             9148..9747
                     /locus_tag="RJ267_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7388790.1"
                     /translation="MLKQLFCILTFIFMLCGCSLRHETINKNENIILKDEGIDSNIFF
                     KKTGKILKIRNANAPLYLNSRAIVYIDNGFSNKYAHYFWGDLPSNLYSFLILSKFEQS
                     NIFTTLLSSTSSLSADYSLESRINSFEQILNNNENYAQISISVNFINLENNQIIAHKI
                     FNTKEKIEKKDIRSTYNAFQKALNKIGNEIVFWVNSNLS"
     gene            9803..10303
                     /locus_tag="RJ267_000922"
     CDS             9803..10303
                     /locus_tag="RJ267_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388791.1"
                     /translation="MKSDLDIFKKHLGEIQGVNEFKANQICSQINDANDFIGALQVLD
                     MSLKKIEKSILERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLF
                     EFEIANPLLILQTSNYEGVLAYIQDKRDEIKIILSELSTAITMGETMDNAGIYNSTMD
                     FKNLFK"
BASE COUNT         3850 a         1504 c         1769 g         3306 t
ORIGIN      
        1 attctgcaac aatcatttag aaacttaaat ggaatttttg gtaacaaaaa ctttacagct
       61 tatgatttag gatttagcat acaaaataat gacgaacctt tttaatttat ttaaatttca
      121 agccttaatt tacctttttt taaacacaat cacgctaaag tatataaaaa tttttaagga
      181 taaattatga tgccttttag tgatgaagag cttataaatc ctgttaaagc aagtttagaa
      241 aagagcttgc ctatgcttga acgtgatggc ggagggcttg aatttttagg aattaaaaat
      301 gggatcgttt atgtccattt aataggagct tgtaaaggct gtgcatcgag tggaacaacg
      361 ctaaaatacg gtcttgaaag gcaacttaag attgatattc atccggaaat cactataatc
      421 aatttaaacg gcggagcaga cgaatttgca aaattataaa aaacttggaa ttgaacattt
      481 ttacaagaaa gattttaaaa ctgcaaaaat gtatttttct atggcttatg aaaaacgcaa
      541 aaataaacgc ttgctaaatt ttatctgcct ttgtgatctt gctttaaaat ctcctaaaga
      601 agcttcttta ctttttgatt tttatataga acattacaaa atctctagca ttgataaaga
      661 cttagaagaa attttaagta caattgaatt taaaaaacaa gaaaacaaac aggaaaacga
      721 atttgaagat gggcatgcgt taaattatca agatttttta aaaagcgaag aagaacttgg
      781 ctttcaaaaa agttttgaaa atatcattaa cagcactaaa ttagttattg ataatcgtga
      841 tgatttttta gattttttgg aaaaattact tgataatggc tataaagata tgactttaaa
      901 ttacatagaa aatgttatgc ctcatttttg ggcaaatgat agatttatca aactccaaga
      961 aaaactcatg ggatttaaaa gtgaaattaa aacttgaaaa ttcattcatt acagataaca
     1021 ccttagagtg tgaaaaagaa tgcttttttt tgcaaaccac acaaaatgct aaatttcacg
     1081 ctcaagcctt agaaaaaggt gcaaaaatca ttgatgtaaa tgagtgtaaa aaacttttaa
     1141 aaatcgatga aaagattcaa atcataggaa tcacaggaac caatggcaaa accacaaccg
     1201 cagcagcgat ttattctatc ttattggatt taggttataa gtgtgggctt tgtgggacaa
     1261 gaggagcttt tatcaacgat gaacaaatcg atgaaaaatc cttaaccacc tcccctattc
     1321 ttaaaacctt agaataccta caaatagcca ctcaaaaaaa atgtgatttt ttcatcatgg
     1381 aagtaagctc acacgcactc gttcaaaacc gcatcgaagg cttaaatttt gctgctaaaa
     1441 tttttaccaa tatcactcaa gatcatttag attttcacgg tacttttgaa aattataaag
     1501 aagcaaaaga actttttttt accgatgaga gtttaaaatt tatcaacaaa gatgctttgg
     1561 ctattaaatt taatgtgcgt aatgctttta cttatggcat agaaaatcct gctttatatc
     1621 aaatcaaagc ttattcttta gaagaaggca ttagtactat tgtaacaaat aaaaatcaaa
     1681 cttttcacat agactcgccc ttgctaggac tttttaatct ttacaatctt ctagttgcta
     1741 gtgcttgtgt gaatgaactc gtaaagcctg atttaaaaga cttggaaaaa gctatcagtg
     1801 gatttggcgg ggtttgtggc agggtagaac aagtagcaaa aggtgtgatt gtagattttg
     1861 ctcatacgcc tgatggcatt gaaaaagtgc ttgacactct taaaaataaa aaactcatcg
     1921 ttgtttttgg agcaggtgga gatagagata aaaccaaacg ccctttaatg ggaaaaatcg
     1981 tcgaacattt tgcaaaaatt gctatcatta caagtgacaa tccacgcagc gaagaaccaa
     2041 aaaccatcat ggaagaaatt ttatcaggct ttactaaaaa agaaaaagtt ttaatgatag
     2101 aagatagaaa agaagctata aaaaaagctt tagaactaaa agaaaatgac gatttagtcg
     2161 ttattttagg caaaggtgat gaaactactc aagaaattaa agggataaaa tatcctttta
     2221 gtgataaagt agttgttaat gaaattttaa aaaatcaagg ataatcaatg tttgaaaata
     2281 tggatttttc taaaatggga gaacttttaa atcaagttca agaaaaagca aaaaatatag
     2341 aactagaact tgcaaatcgt gaatttagtg ccaaaagcgg agcaggactt gttaaagtaa
     2401 gtgccaatgg aaagggtgaa attatcgatg ttagcattga tgattcttta cttgaagata
     2461 aagaatcctt gcaaatttta cttatttctg caattaatga tgttttggct atggttgcac
     2521 aaaatcgttc aagtatggcg aatgatgttt taggcggttt tggaggtatg aaattatgaa
     2581 aaaaatttta attatttgca tgctttttac tttgtctttt ggtatagaaa gacctaaatt
     2641 tgaagatttt ttagcaggtt atgaaagaaa taaggcaagc atgctcaact atgaaggaat
     2701 gccagctttt gcactcagtg aaaatttact tgctgtgtta aaacagccta atgctaagct
     2761 taacaaatat gtaaaatacg atccattttt aaatttatat cttgtaagaa ctgactttag
     2821 cctaatccct actcctatgg gtgatgaaga aaaacttact cgtaatgatt gggttggaat
     2881 ttgggatcct aataaacctt atatagggca tattaagtat ttagctcaaa atattgatga
     2941 aaaagatcaa cttgatttta attctaaaat aggactttta gggactccat gctgtgaaat
     3001 gatggggatt gctttaaata atagctcttt tataggcaat cgctatttaa aacattttat
     3061 gaaatataac gatgtttatt ggggggatat tggcgttgat tttgttgttc gagaaaataa
     3121 aatttatgtt aacaatgtaa gaaaaaatcc acaattttta atcaatgatc aagttataag
     3181 tgttgatggc ttacccgcca atgatttaag aaaactcaat gaaaaaattc tttttgcaga
     3241 tcgcggaagc actctttatt ttcaagtgtt gcgtgataat atggatttaa atatttctac
     3301 tgaagttttt gcaaaagatt tgagcaaatt taaccttcct gattctaaac caaaaccaaa
     3361 aattacaaat ttcacaagca atcttggttt aacggttaat gctagtcttg ttgtaactaa
     3421 aatagatcca aaatcaaaag tatcaaatgc aggatttatg gtaggagata aaattttacg
     3481 cgttaataat attattttaa ataattttaa agaattacaa aatattttaa gtgctggtaa
     3541 tgactttagc atcttaattg aacgcaaaag tactaaatta cctttatcaa atttcaacaa
     3601 tgaactaggc ggaaatgcca actcaggtgg cgatggtaaa tttcaatttt tcataaggct
     3661 tactaagtga atttaaaaga actttttatc catcacttag aaaaaaatct acccaaagtt
     3721 gaaagctttc atcctttttt caatgaagct ttagcactta tgttaaaagc aggaggaaag
     3781 cattttcgcg cacaattgct tttaagcgta gtgcaaagca ataaacctga acttttaaat
     3841 caagctttag atgtagcttt agctttggaa tttatccata cttattcact catacacgat
     3901 gatttacccg ctatggataa tgcggacttt agacgaggaa ttccaacctt acacaaaagc
     3961 tacgatgaaa ctacagccat cttagtaggt gatgctttaa ataccgaagc ttttttagtt
     4021 ctaagtcatg ctcatttaaa agatgaaatc aaaatcaaac tcatcaaaac ccttgccttt
     4081 aatgcaggac ttaatggaat ggtcatagga caagctattg attgtttttt tgaagacaaa
     4141 agactgagtt taaatgaact tgagtttttg catacacata aaaccgcaag attgatcgcc
     4201 gcagctttaa aaatgggttg tgaaatttgc gaacttaaca acgaagaaag caatcaaatt
     4261 tacaaacttg gtttaaaact aggactgatt tttcaaatca atgatgatat tatcgatgta
     4321 actacaagtc aagaacaaag cggaaagcct accaacaacg atattcataa aaattctttt
     4381 gtcaatttgc ttggacttga acaagccata aaaacaaaag aaaatcttct tagtgaatgc
     4441 gaacaagact tagaaaaact taatgaaaaa ctcgcacaaa tgatacaaaa tttaataatt
     4501 caatacttat aaaggcaaaa taatgaacat tcaaatttta caagaacagg caaatactct
     4561 aagattttta agtgctgata tggtgcaaaa agcaaactca ggacacccag gtgcaccttt
     4621 gggcttagca gatattttaa gtgttttaag ttatcattta aaacacaatc ccaaaaatcc
     4681 aacttggcta aaccgagata gacttgtatt ttcaggcgga catgcaagtg ctttgcttta
     4741 tagtttttta catttaagcg gctatgactt aagcttagaa gatcttaaaa atttccgcca
     4801 acttcattct aaaacccctg gacaccctga aatttcaact cttggagtag aaatcgctac
     4861 aggcccttta ggacaaggcg ttgccaatgc tgtaggcttt gctatggcag caaaaaaagc
     4921 acaaaatttg ctaggcagtg atttaatcga tcataaaatt tattgtcttt gcggagatgg
     4981 ggatttacaa gaaggcattt cttatgaagc ttgttcttta gcaggacttc acaaacttga
     5041 taacttcata cttatttatg atagcaacaa tatctctata gaaggcgatg taggtttagc
     5101 ctttaacgaa aatgtaaaaa tgcgttttga agcacaagga tttgaagttt taagtataaa
     5161 tggacacgat tatgaagaaa tcaataaagc cttagaacaa gctaaaaaat ccacaaaacc
     5221 ttgtcttatc atcgcaaaaa caactatagc aaagggtgca ggagagcttg aaggcagtca
     5281 taaaagccat ggcgcacctt tgggtgaaga agtgattaaa aaagccaaag aacaagcagg
     5341 ctttgatcca aatatcagtt ttcatatccc acaagcaagc aaaatccgct ttgaaagtgc
     5401 tgtagaactt ggggatttag aagaagcaaa atggaaagat aagcttgaaa aaagtgctaa
     5461 aaaagaactt ttagaaaggc tattaaatcc tgattttaac aagatagctt atcctgattt
     5521 taaaggaaaa gatcttgcta caagagatag taatggtgaa attttaaatg ttttagctaa
     5581 aaatttagaa ggatttttag gtggaagtgc agacttaggc ccttcgaata aaacagaact
     5641 tcacagtatg ggagactttg tagaaggtaa aaatatccat tttggtatca gagaacacgc
     5701 tatggcagcg attaacaatg cttttgcaag atatggaatt ttcttaccat tttcggcaac
     5761 ttttttcatc tttagcgagt acttaaaacc tgccgcaaga atagcagctc taatgaaaat
     5821 caaacatttt ttcattttca cacacgatag cataggcgtg ggcgaagatg gaccaacaca
     5881 ccaacctata gaacaactta gcacttttag agctatgcca aattttttaa cctttagacc
     5941 tgctgatggg gtggaaaatg tcaaagcttg gcaaatagcc ctaaatgctg atattccgag
     6001 tgcttttgtg ctttcacgcc aaaaactcaa agctctaaat gaacctgttt ttggagatgt
     6061 aaaaaacgga gcgtatttac tcaaagaaag caaagaggct aaatttacac ttctagcaag
     6121 tggaagtgaa gtttggcttt gtctagaaag tgcaaacgaa cttgaaaaac aaggttttgc
     6181 ttgtaatgtt gtttccatgc cttgttttga actttttgaa aaacaagata aagcttatca
     6241 agaaagattg ttaaaaggtg aagttatagg tgttgaagca gcacattcta atgaacttta
     6301 taaattttgc cataaagtat atggcataga aagttttgga gaaagtggta aagacaaaga
     6361 tgtgtttgaa cgctttggat ttagcgtttc aaagcttgta aattttatcc ttagcaaata
     6421 aaatgaatac aaatttcaaa tttcaaaata atactctttt tatctttgga atttgggata
     6481 aaacaagtat ttataagtta aaaataaaag attttttagc tttgatccaa agcaaggaag
     6541 tgatttttga ttttaaagat ctaaaagcaa tcgataccgc tggagtgaga tttttccttg
     6601 ctttggaaaa tgaccttaaa aataaaaata ttaaaatcac caaagaaggc ttaaattcac
     6661 gctttcaaac cctttttgaa ctttgtgaaa aaaactacca aagactaggc aaaacaaaaa
     6721 aatcacatca aaatttcagt gaatacttta tcgatcttgg aaaattaagt ttagaacttt
     6781 taaaaatttt aagaaaattc atcaatttca caggagcttt tttcacaagt ctttttttat
     6841 gcctcaaaaa tcctaaaaat tttcgcttta ttgctttttt atatcatata gaaaattctg
     6901 cttttaaagc cttacctata gttattttaa ccgctctttt agtaggagtg gttttagcct
     6961 atcaggctgc ttaccaactc gcacaatttg gagccaatat tttcatagtg gatttgatgg
     7021 gaatttcagc cactagagaa cttgcacctt taatcgctgc catagtgatc gcaggaagaa
     7081 gtgcaagctc ttataccgca caaattgggg tgatgaaaat tactgatgaa attgcagcta
     7141 tgaatactat gggttttcgt tcttttgaat ttattgttat tccacgtgtc atggctttgg
     7201 tagtagctat gcctttaatc gttgccatta gcgatgcaat cagtattata ggtggaatga
     7261 tggttgcaaa attaaatctt gatatttctt ttgccgaatt tttaagacgc tttagagaag
     7321 ctgtagatat aaaacatatc tttataggac ttgcaaaagc acctattttt ggatttttga
     7381 taggacttat tgcttgtttt cgtggttttg aggtaaaaaa cactacacaa agtataggaa
     7441 tttatacaac aaaaagcgtt gtaaatgcta ttttttgggt gatagctttt gatgctttat
     7501 tctctgttat tttaacttct acaggaattt aaatggttat taaagcacaa aatatcatta
     7561 caaaatttgg agaaaaaatt gtccatgatg gcgtaagttt tgaaatcaaa aaaaacgaaa
     7621 tttttggtat tttaggaggt agtggaagtg gaaaatccgt ccttttaaaa caaatgctta
     7681 tgcttgaaca ttttgatgat ggagaatatg aaattttagg ctataaactt aaaaatatca
     7741 acgaagaaga tgcacttgct ttgcgtaaaa aatggggtgt ggtttttcag tttgctgcac
     7801 tttttagctt ttttaatgtt tatgaaaata tcgctattcc tttaaaagaa tacactcatt
     7861 tagatgaaaa tagcatacaa gaactggttt taatgaagct aaaaatggta ggcttaaacg
     7921 aaagtgtttt aaaacaattt ccaagcgaac ttagtggcgg tatgcaaaaa agagtggcaa
     7981 ttgctagagc tttagcactt gatagtaaat tgcttttttt agatgaacct acttcaggac
     8041 ttgaccctca tagtagtcgt gaatttgacg atttggtttt agagttaaaa aaaagttttg
     8101 atctaaatat cattttggtt acacatgata aagaaagtat gaaaaattta ctcgatcgtt
     8161 ttatcatttt agaaaataaa aaagttggat tttgcggcac ttatgaagaa ttacgcttgc
     8221 aaaatgaacg actttttaaa agatttatgg agtaaaagtg gaaaatagag caaattattt
     8281 ttttgtagga ctttttgttt ttggagtatt ttttgcaagc cttggtttca tactttggct
     8341 tggtggatac tctaaagaag aaagttttaa gtattatgaa attcacacac aagaatccgt
     8401 tgcaggactt ggcataaaag cacccgtaag gcttttgggc gtggaagtag gtagcgtaga
     8461 agaaatcagc atttacaatc aagatgaact cggcgttaac atacgcatca aggtcaaaaa
     8521 caatacccct ataaaagaag atacttttgc tactttgcaa cttcaaggta tcacaggact
     8581 taaatttatc caacttcaag gcggaagtaa aaatagtaaa gatctagtat ctatgcaggg
     8641 aaaacttcca gtcattcctt ttaaagaaag ttttttagcg accatagaca gacaaagtga
     8701 acatattttt tctttggtta aaacggccga tgataaatca aaagaacttt taagcgaaaa
     8761 aaatcttaaa aatctagaaa tccttttgca aaatctagca gaattaagtg caaatttaaa
     8821 cgctaattct aaaaatttaa gtcttaatct ttcaaacgca agtttaaaaa taggaaaaat
     8881 ggctgataat ataagcctta gtgcgcaaaa tttcaactcc agtcttaaaa acataaaaga
     8941 aagcacaatg attttaaaaa atttcataaa aaaagctgat gaaaaattaa acacttatga
     9001 tgatattaaa gcatctttga tgcaaaattt agaacttttt aaacgggttt taattgaaag
     9061 caatattcta atagaaaatt tacaaaacag ccctgctgat ttgattttta aagaaactaa
     9121 acctaaactt ggaccaggag aaaaataatg ctaaagcaat tattctgtat tttgactttt
     9181 atttttatgt tatgcggatg ctctttaaga cacgaaacca tcaataaaaa tgaaaatatc
     9241 atattaaaag acgaaggaat agactcaaat atttttttta aaaaaactgg taaaattctt
     9301 aaaattcgca atgcaaatgc acctttgtat ttaaactcaa gagctattgt ttatatagat
     9361 aatggtttta gcaacaaata cgcacattat ttctggggag atttaccaag caatctttat
     9421 tcttttttaa ttttatcaaa atttgaacaa agcaatattt ttacaacctt actttcttca
     9481 acaagctctt taagtgcgga ttattctctt gaaagcagga ttaactcttt tgagcaaatt
     9541 cttaataaca atgaaaacta cgctcaaatt tctataagcg taaatttcat aaatcttgaa
     9601 aacaatcaaa taatagctca taaaattttc aataccaaag aaaaaataga aaaaaaagat
     9661 atccgctcta cctataatgc ttttcaaaaa gccttgaata aaattggcaa tgagattgtt
     9721 ttttgggtaa attctaactt atcctaattt aggaacactt tttgcttttt aaatatttag
     9781 caatattttt gaaaggtaaa caatgaaaag tgatttagat atatttaaaa aacacttagg
     9841 tgaaattcag ggcgtgaatg aatttaaagc aaatcaaatt tgctctcaaa tcaatgatgc
     9901 aaatgatttt ataggagcac ttcaagtgct tgatatgtct ttaaaaaaaa tagaaaaaag
     9961 cattctagaa agaatagatg aaaattcaga tgatatgcaa aaaagaactc ttgatgccac
    10021 agcgtcacaa cttatacaaa actgctcttt catgggaaca gctctttttg gaaatatttt
    10081 caatgtttat gttggtaaaa aactttttga atttgaaatt gctaatccac ttttaattct
    10141 tcaaacaagt aattacgaag gtgtattggc ctatatacaa gataaaagag atgaaataaa
    10201 aatcattcta tcagaattat caaccgcaat taccatgggc gaaactatgg ataatgctgg
    10261 aatttataac tctacaatgg attttaaaaa tttatttaaa taagaatagt aatcgtttgt
    10321 tctctttaag caaatataat atattttagc ttaaagagat tttccaaact ctaaaagaga
    10381 gttaggctac gaataaaaag ggggagggaa atagcctaac ccaaacgag
//
LOCUS       DAPIWQ010000052        10045 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.052, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000052 DAPIWQ010000000
VERSION     DAPIWQ010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10045)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10045)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10045
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.052"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(174..2771)
                     /gene="flgE"
                     /locus_tag="RJ267_000923"
     CDS             complement(174..2771)
                     /gene="flgE"
                     /locus_tag="RJ267_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HDV7388792.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDGGLTNYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFID
                     PGMHIPAAKSTEVAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQ
                     FYTTSKNSVEVTEKGVDAGSLFNAKGQGLNLRDGQGIWVSYADATYSTNKVGVNAFDP
                     NLQQNQTAAFWGTANQKVNLDITLNGVRIQNADIQSIDDAIAYINTFTAPTDTRDGTG
                     VKAVKNKDGSGIDFVNDNADGTTDNMKNINLVVANTNTAGELWNAVWDNNNQTFTFNN
                     NGNGQAGTPTINKNGSSLWTATNITFTPQPPQAATNVQLTGGLNAQIITAHKYIYSSN
                     PVDIGPMYNPDGGPVFQPGANATTRPTEPGSAAYWDAVNGGLLNTNVRTFRTTEDLRE
                     LLQRDARYGVDYDGSGTFAAADINQNIKVVVTADGHFAISNANEQSTVPPNAINGVGN
                     ATTTDPKNMSFNITAYSNKQGTVSTNDAFTAIFKAFDGPLVIGNQIKESEQLKLSAFS
                     AGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPNNIIVGT
                     ARFNNDGSLASYTPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQAT
                     DGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVT
                     ANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQM
                     LQTLIQLKQ"
     gene            complement(2974..3456)
                     /gene="ruvC"
                     /locus_tag="RJ267_000924"
     CDS             complement(2974..3456)
                     /gene="ruvC"
                     /locus_tag="RJ267_000924"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HDV7388793.1"
                     /translation="MNLKILGIDPGSRNCGYAIIEANKGKNILIEAGLIKIKPSTLQY
                     QITELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAE
                     YTPLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV
                     "
     gene            3552..4874
                     /gene="dnaA"
                     /locus_tag="RJ267_000925"
     CDS             3552..4874
                     /gene="dnaA"
                     /locus_tag="RJ267_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HDV7388794.1"
                     /translation="MNPSQILENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPN
                     ELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTILN
                     PSFTFESFVVGDSNKYAYGACKAIIHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD
                     HIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP
                     QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKILVKSQS"
     gene            5034..6101
                     /locus_tag="RJ267_000926"
     CDS             5034..6101
                     /locus_tag="RJ267_000926"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HDV7388795.1"
                     /translation="MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLI
                     RASDYEIGINYKIKKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLFIRQKS
                     TKYKLPMFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDKINFVGTDTKRLAIYTLEKANNQEFSFSIPKKAIMEMQKLFYEKIEIFYDQNML
                     IAKNENFEFFTKLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEKMRLHF
                     NKDKIIFEGISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNE
                     PNSAFIVKSQGLSMIIMPMIL"
     gene            6130..8439
                     /gene="gyrB"
                     /locus_tag="RJ267_000927"
     CDS             6130..8439
                     /gene="gyrB"
                     /locus_tag="RJ267_000927"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HDV7388796.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK
                     KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEG
                     GISQFVTDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKG
                     KLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVTNGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGM
                     NDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKANNEELFSVIKQFLETQ
                     GHNILNHYINENEIRAFVQTQNGLEELVINEELFTHPLYEEASYIFDKIKDRGLEFDK
                     DILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAND
                     TFNLFMGDEVEPRRDYIQAHAKDVKHLDV"
     gene            complement(8467..8808)
                     /locus_tag="RJ267_000928"
     CDS             complement(8467..8808)
                     /locus_tag="RJ267_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monoheme cytochrome C"
                     /protein_id="HDV7388797.1"
                     /translation="MKKIILILALFLSASWAQNLEINPDTGLIIDPDSPLVEANCLAC
                     HGSNLITNMHASRKAWLAAIRWMQDSEGLWEIEPEDEEKILNYLEKYYGEKYDTRRRI
                     PLAILLQNKTH"
     gene            complement(8811..>10045)
                     /locus_tag="RJ267_000929"
     CDS             complement(8811..>10045)
                     /locus_tag="RJ267_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HDV7388798.1"
                     /translation="QNDQKENRRDFLKNIGLGLFGISVLSNFSFENFLGSKALAKELP
                     DFKIEGKKDLIYHGEKPLTAETEIYALDSDFTKPENFFVRNNGLPPSLETIKERLHKG
                     WTLEIDGESIINKKSYTIEDLKKKFKTYTYALTVECGGNGRSEVIPSTKGTQWGYGAV
                     ACGRWTGVRLKDILKDCGIKNDAVYIGYYGIDTKLNGEETSPISRGVPISKALQDETL
                     IAWAYEGKDIPLVNGYPLRLVCGGYPASTSGKWLYKISVRNKIHDGEKMEGSYKVPVN
                     PVKPGDFNYKGEMKIIESMPIRSVITNIKNGSEIKANKKFEVRGKAWAGELEVSEVYV
                     SNDYGVTWTKAKVEKPLNRLAWQKWSAQISIPTKGYYEIWARAIDSQGNSQPMVLAQW
                     NPGGYINNACHRVNVYGV"
BASE COUNT         3498 a         1646 c         1607 g         3294 t
ORIGIN      
        1 cattgctgaa aattttattg caacccaccc ctagcaagag tgagttagca ataaattgaa
       61 ggcagttcaa gcctaagcct agtattacaa gactaccaag ataggcttgt aaagcaaggc
      121 ttgctccctt aaagggagca aaaaacaata ttttatagaa tactaagctt aaattattgt
      181 ttaagctgga ttagagtttg gagcatttga tcactcgttg aaatggtttt tgagtttgct
      241 tgataacctc tttgaatgat aataagctct gttaaagaac gacttaaatc cacatttgac
      301 atttcaagag ctgaggtttt catctcacca cgacctcctg ttcctgcttc acctaccacg
      361 atattaccac tatttgcagt aactttaaaa agatttccac caatttcctc aagacctgag
      421 ttatttgcca ctgaagccat tgcgattttt gctacagcaa aggttttgcc attagtaaat
      481 tcacctaaga tattaccttt atcatccaca cggatagcat caggttttaa gttacctgaa
      541 gtataaccat cagttgcctg tcctgttaga gttgaagcag aatttgagct tacaaggccg
      601 tcattgcttc cacttgttcc aaaggaaagt ttgatttgtt gatttggtgc ggcaccattg
      661 tttggtgaga aatttatcgt tcttggtgta taactagcta aagagccgtc attgttaaat
      721 ctagctgttc ctacgatgat attgtttggt ccttcgcctg tagtgttaat ctctgcaggt
      781 tcaggtacac ggatgatcat ttgccattca ttacccccat cttgagtggt actttgctta
      841 acaaactgca cttctaaagt gtgttttgaa cctaaagaat cataaatttc aagccccgcc
      901 gaaaaagcag aaagcttaag ttgttcgctt tctttgatct gatttcctat aaccaaagga
      961 ccatcgaaag ctttaaaaat agcagtgaaa gcatcattag tacttacagt tccttgtttg
     1021 ttactataag ctgttatatt aaaactcata ttttttggat ctgttgtagt ggcatttcct
     1081 acaccattaa tagcatttgg tggaacagtt gattgttcat tagcattgga aatagcaaaa
     1141 tgtccatctg ccgttactac tacttttata ttttgattaa tatcagctgc agcaaaagtt
     1201 ccacttccat cataatcaac cccatatcta gcatcccttt gtaaaagttc tcttaaatct
     1261 tctgtggttc taaaagttct tacattagta tttaaaagtc caccattaac agcatcccaa
     1321 taagctgctg aacctggttc agttggtctt gtagttgcat tagcaccagg ctggaatact
     1381 ggtccaccgt caggattata cataggacct atatccacag ggtttgaact ataaatatat
     1441 ttatgtgctg ttattatttg tgcatttagt ccaccagtaa gctgaacatt cgtagctgct
     1501 tgaggaggtt gtggtgtaaa tgtaatattt gtagctgtcc acaaagaaga accattttta
     1561 ttaatagtcg gtgttccagc ctgtccatta ccattattat taaatgtaaa tgtttgattg
     1621 ttgttatccc atacagcatt ccaaagctca cctgctgtat tggtattggc aaccacaaga
     1681 ttgatatttt tcatattatc tgtagtacca tcggcattat cattgacaaa atcaattcca
     1741 ctaccatcct tatttttaac cgcttttaca cctgttccat cccttgtatc cgttggtgca
     1801 gtaaaggtat tgatataagc aatagcatca tcaatacttt gaatatcagc attttgaatt
     1861 ctaaccccat ttaaagttat atctaaattc actttttgat tagctgttcc ccaaaaagca
     1921 gcagtttgat tttgctgtaa atttggatca aaagcattta ctcctacttt attggtagaa
     1981 tatgttgcat ctgcataaga tacccaaatt ccttgtccat ctctaagatt aagtccttgt
     2041 cctttcgcgt taaaaagtga tcccgcatcc acaccctttt ctgtcacttc tacagaattc
     2101 ttagaagtcg tataaaactg agtagttcct gtatcatttt catcttctgc tctttgggtt
     2161 ttagtattcc atccatgaac agaatcaagt gcataaagat ttctacttga agttcctata
     2221 tttaaaccac tatttaaatt cgctttgata gcaacttcag tagattttgc tgcagggata
     2281 tgcatacctg gatcgataaa aatattttgt ggagttcttg aactatctat agtttgatca
     2341 tcccagttga tattccaccc ttggacaaca aaacctgcat tattaacaaa atttccataa
     2401 gcatctagtt taaaatcccc gctccttgta agatagtttg taagaccacc atcatcgctt
     2461 accataaaaa aaccatcgcc atttatagca acgtcagtgt ttttatctgt ggtttgaact
     2521 gaaccttgag aatgaattct agttgtagaa cttactgaaa cgccaagacc gatttgaagt
     2581 ggattagatc cacctcttcc atcagttgga gctgtagcga ttttcacagt ttggctaaac
     2641 atagtcccaa aatctgcacg ggagtattta aaaccagtgg tattaacatt tgaaatgtta
     2701 ttaccttcaa catccatcgc aacttgatgt gcttgtagtc cgcttacgcc agaccaaagt
     2761 gatctcatca tcttaaatcc tttataaaat attgctttaa aaatttaacg ctttggcttt
     2821 aaaaaacttt tgcgtttatg tgaagtttac aagcaagttc tgttccaact tttgaaattt
     2881 tttatgaatt ttttaaaaat ttatagaaaa aatttaaagg tattttggga gtttatgaag
     2941 ctttggtctt ttgtgtaatg aaaattacca aaatcacacc ctaactctta aatttgctgc
     3001 atgggttaaa gccactgcga tagcatctgt gatgtctaaa ggcttgatat ctttactaag
     3061 tcctaaaagc ctttttacca taaaagcaac ttgttcttta gttgctttgg cttttcctgt
     3121 aacggctttt ttcacttgta agggagtgta ttctgcaaag tctccatgaa tttgaagaat
     3181 ttttaaagat agggctccac gaaattgtgc gagttttaaa acggtttttg gattgtaagc
     3241 aaaaaagata tcttctatag ccacctcatc aaaagaatga tttttaaaaa tcaagtccaa
     3301 accctcgcaa agctctgtga tttgatactg taaggtactt ggctttatct ttataagtcc
     3361 tgcttctatg agaatgtttt ttcctttgtt ggcttctatg atagcataac cacaatttct
     3421 tgaacctgga tctataccta aaattttcaa attcatacct tttgaaaaat aaaatacgaa
     3481 agcggatttt aacctttttt tataaaattt aagataaaat ttatacatta tgcaaaattt
     3541 aaagagagat tatgaatcca agccaaatac ttgaaaattt aaaaaaagaa ttaagtgaaa
     3601 acgaatacga aaactattta tcaaatttaa aattcaacga aaaacaaagc aaagcagatc
     3661 ttttagtttt taacgctcca aatgaactca tggctaaatt catacaaaca aaatacggta
     3721 aaaaaatcgc acatttttat gaagtgcaaa gtggaaataa agccattata aatatacaag
     3781 cacaaagtgc taaacaaagt aacaaaagca caaaaatcga catagctcat ataaaagcac
     3841 aaagcacgat tttaaatcct tcttttactt ttgaaagttt tgttgtgggg gattctaaca
     3901 aatacgctta tggagcatgt aaagctataa tacataaaga caagcttgga aaactttata
     3961 atcctatctt tgtttatggg cctacaggac ttggaaaaac acatttactt caagcagttg
     4021 gaaatgcaag cttagaaatg ggaaaaaaag ttatttacgc taccagtgaa aattttatca
     4081 atgattttac ttcaaattta aaaaatggct ctttagataa atttcatgaa aaatatagaa
     4141 actgcgatgt tttacttata gatgatgtgc agtttttagg aaaaaccgat aaaattcaag
     4201 aagaattttt ctttatattt aatgaaatca aaaataacga tggacaaatc atcatgactt
     4261 cagacaatcc acccaatatg ctaaaaggta taaccgaacg cttaaaaagt cgttttgcac
     4321 atgggatcat agctgatata actccacctc aactagatac aaaaatagcc atcataagaa
     4381 aaaaatgtga atttaacgat atcaatcttt ctaatgatat cataaactat atcgccactt
     4441 ctttagggga taatataaga gaaatcgaag gtatcatcat aagtttaaat gcttatgcaa
     4501 ccatactagg acaagaaatc acactcgaac ttgccaaaag tgtgatgaaa gatcatatca
     4561 aagaaaagaa agaaaatatc actatagatg acattttatc tttggtatgt aaagaattta
     4621 acatcaaacc aagcgatgtg aaatccaata aaaaaactca aaatatagtc acagcaagac
     4681 gcattgtgat ttacctagct agggcactta cggctttgac tatgccacaa cttgcaaatt
     4741 attttgaaat gaaagatcat acagctattt cacataatgt taaaaaaatc acagaaatga
     4801 tagaaaatga tggttcttta aaagcaaaaa tcgaagaact taaaaacaaa attcttgtta
     4861 aaagtcaaag ttaagtgaaa ggatgtgaaa aataaattct agagtgtgaa aaaaagaaat
     4921 taagcaaagt atgataaaat acaaatttga ttattttgct ttgaagaatt tcacaatttc
     4981 aacaagctta ttattacaac gaatttaaaa ttaaaataaa ccaaggagaa aaaatgaagt
     5041 taagtatcaa taaaaatact ttagaatctg cagtgatttt atgtaatgct tatgtagaaa
     5101 aaaaagactc aagcactatt acttctcatc ttttttttca tgctgatgaa gataaacttc
     5161 ttattagagc tagtgattat gaaataggta tcaactataa gataaaaaaa atccgcgtag
     5221 aatcaagtgg ttttgctact gcaaatgcaa aaagtattgc agatgttatt aaaagcttaa
     5281 acaatgaaga agttgtttta gaaaccattg ataatttctt atttataaga caaaaaagca
     5341 caaaatacaa acttcctatg tttaatcatg aagattttcc aaattttcca aatacagaag
     5401 gaaaaaacca atttgacatt gattcaagtg acttaagtcg ttctcttaaa aagatattac
     5461 caagtattga tacaaacaac ccaaaatact ccttaaatgg tgcattttta gatataaaaa
     5521 cagataaaat taacttcgta ggaactgata caaaacgcct tgcaatctat actttagaaa
     5581 aagcaaataa tcaagaattt agttttagta tccctaaaaa agctatcatg gaaatgcaaa
     5641 aacttttcta tgaaaaaata gaaatttttt atgatcaaaa tatgcttatc gctaaaaatg
     5701 aaaattttga attctttaca aaacttatca atgataaatt tccagattat gaaaaagtta
     5761 taccaaaaac tttcaaacaa gaactcagtt tttcaactga agattttata gatagtctta
     5821 aaaaaatcag cgttgtaact gaaaaaatga gacttcattt taacaaagat aaaatcatct
     5881 ttgaaggtat aagtttagac aatatggaag caaaaacaga acttgaaatt caaacaggag
     5941 taagtgaaga atttaatctt actataaaaa tcaaatattt acttgatttc ttaacttcta
     6001 tagaagaaga aaaattcact ttaagtgtaa atgaacctaa ttcagcattt atagtcaaat
     6061 cccaaggact atcaatgatt atcatgccta tgattttgta ataaaacaag taaaagataa
     6121 aggaaaaata tgcaagaaaa ttatggtgcg agtaatatta aagtcttaaa aggcttagaa
     6181 gctgttagaa aacgcccagg tatgtatata ggagatacaa acataggcgg acttcatcat
     6241 atgatttatg aagttgtgga taattctatt gatgaagcta tggcaggaca ttgtgatact
     6301 atagatgtag aaatcactac tgaaggaagc tgtatagtta gtgataatgg tcgtggtatt
     6361 cctgttgata tgcacccaac tgaaaatatg ccaactttaa ctgttgtttt aactgtccta
     6421 catgcagggg gaaaattcga taaagatact tataaagttt caggcggttt gcacggtgtt
     6481 ggggtttcgg ttgtaaatgc actttctaaa aaacttgtag ctacagttga aagaaatgga
     6541 gaaatttatc gtcaagaatt ttcagaaggt aaagttatca gtgaatttgg tgtgatagga
     6601 aaaagtaaaa aaacaggaac aactatagaa ttttggcctg atgatcaaat ttttgaagtg
     6661 actgaatttg attatgaaat tttggctaaa agatttcgtg aacttgcata cttaaatcca
     6721 aaaatcacta taaattttaa agataaccgc gtaggcaaac atgaaagttt tcactttgaa
     6781 ggtggaattt ctcagtttgt tacagactta aataaaaaag aagctttaac taaagcaatt
     6841 ttctttagcg tagatgaaga agatgtgaat gttgaagtag ctttgcttta caatgatact
     6901 tatagtgaaa atttactctc ttttgtaaat aatatcaaaa ctccagatgg tggaacacac
     6961 gaagctggtt ttagaatggg tttaactcgt gtgataagta actatataga agcaaatgca
     7021 agtgctagag aaaaggataa taaaatcacg ggtgatgatg tgcgtgaagg tttgatcgct
     7081 attgtgagtg taaaggtgcc tgaaccacaa tttgaaggac aaaccaaagg aaaacttggt
     7141 tcaacttatg tgcgtcctat agtttcaaaa gcaagttttg aatatttgac taaatatttt
     7201 gaagaaaatc ctatcgaagc taaagctata atgaacaaag ccttaatggc agctagagga
     7261 agagaagcag cgaaaaaagc tagagaatta acgcgtaaaa aagaaagttt aagcgtagga
     7321 actttaccag ggaaattagc tgattgtcaa agtaaagatc caagtgaaag tgaaatttat
     7381 cttgtggaag gggattctgc aggaggttct gcaaaacaag gtagagaaag atctttccaa
     7441 gctatactgc ctttgcgtgg taaaatttta aatgttgaaa aagcaagatt agataaaatt
     7501 ttaaaatctg agcaaattca aaatatgatt accgcttttg gctgtggtat aggtgaagat
     7561 tttgatcttt caaaacttag atatcataaa atcatcatca tgacagatgc ggatgttgat
     7621 ggatcacata tacaaacctt gcttttaact ttcttcttcc gttttatgaa tgaacttgtg
     7681 acaaatggac atatttattt agcacaacca cctttatatc tttataaaaa agctaaaaag
     7741 caaatttatt taaaagatga aaaagctttg agcgaatacc tgatagaaac aggaatagaa
     7801 ggtttaaact atgaaggtat aggaatgaat gatttaaaag attatttaaa aatcgtcgca
     7861 gcttatcgtg cgattttaaa agatcttgaa aagcgtttta atgtgatttc tgtgatacgc
     7921 tatatgatag aaaattcaaa tttagttaaa gcaaataatg aagaattatt tagtgtaatc
     7981 aaacaatttt tagaaacaca aggacacaat atcttaaatc attatatcaa tgaaaatgaa
     8041 attcgagctt tcgttcaaac tcaaaatggc ttagaagaac ttgtgatcaa tgaagaactt
     8101 ttcactcatc cactatatga agaagcaagt tatatttttg ataagattaa agatagaggc
     8161 ttggaatttg ataaagatat tttagaagtt cttgaagatg ttgaaaccaa tgctaaaaaa
     8221 ggtgccacta tacaacgcta taaaggttta ggggaaatga atcctgagca actttgggaa
     8281 accacaatgg atccaagcgt aagaagactt ttaaaaatca ctattgaaga tgcacaaagt
     8341 gcaaatgata cctttaatct ctttatgggt gatgaggttg aaccaagacg cgattatatc
     8401 caagcgcacg ctaaagatgt aaagcatttg gatgtgtaaa aatttatcat tgaagaaatg
     8461 atttcttcaa tgagttttgt tttgtaagag tatagctaga ggaattcttc ttcttgtatc
     8521 gtatttttct ccataatatt tttcaagata atttaaaatt ttttcttcat cttcaggttc
     8581 tatttcccaa agtccttcac tatcttgcat ccatcttata gctgctaacc aagcttttct
     8641 acttgcatgc atattggtaa tgagattgga tccatgacaa gctaaacaat ttgcttccac
     8701 taaaggtgaa tcaggatcga taatcaatcc tgtatcaggg ttaatttcaa gattttgagc
     8761 ccaacttgca cttaaaaaca atgctaagat caatataatt tttttcatac ttaaactcca
     8821 taaacattaa ctctatggca tgcattattg atatatcctc ctggattcca ctgtgctaaa
     8881 accataggtt gactgttacc ttgactatcg atagctcttg cccaaatttc ataatatcct
     8941 tttgttggta ttgatatttg agcactccat ttttgccatg ctaatctatt taatggtttt
     9001 tctacctttg ctttagtcca tgttacgcca taatcattgc ttacataaac ttcactaact
     9061 tcaagttctc cagcccaagc tttacctcta acttcaaatt ttttatttgc ttttatttca
     9121 gaaccatttt tgatattagt aattacagat cttataggca ttgattctat gattttcatc
     9181 tcgcctttat agttaaaatc tcctggtttt accggattta caggaacttt ataagaacct
     9241 tccatttttt caccatcatg aattttattt cttactgaaa ttttataaag ccatttaccg
     9301 cttgtacttg cagggtaacc accacaaaca agtctaagtg gatagccatt gactaaagga
     9361 atatctttgc cttcataagc ccaagctatt agagtttcat cttgtaaagc tttagaaata
     9421 ggaactcctc tactaatagg tgaagtttct tcaccattta attttgtatc tatgccataa
     9481 tatccgatat aaaccgcatc atttttgatg ccacaatctt ttaaaatatc ttttaaacgc
     9541 actcctgtcc atctaccgca agctactgca ccataacccc attgagttcc ttttgtgcta
     9601 ggtataactt cggatctacc atttccaccg cattcaactg ttaaggcata agtataggtt
     9661 ttaaatttct tttttaaatc ttctatggtg taagattttt tattgataat gctttctcca
     9721 tcgatttcta aagtccaacc tttatgaagt ctttctttta tcgtttctag gcttggtggt
     9781 aagccattat ttctaacaaa gaaattttca ggtttagtaa aatcagaatc aagagcataa
     9841 atttcagttt ctgctgttaa tggtttttcg ccatggtaga taagatcttt tttaccttct
     9901 attttaaaat caggcaattc ttttgccaaa gccttacttc ctaaaaaatt ctcaaaagaa
     9961 aaatttgaca atacactaat gccaaataaa ccaagtccta tattttttag aaagtctcta
    10021 cgattttctt tttgatcgtt ctgtt
//
LOCUS       DAPIWQ010000053        10017 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.053, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000053 DAPIWQ010000000
VERSION     DAPIWQ010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10017)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10017)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10017
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.053"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            91..943
                     /locus_tag="RJ267_000930"
                     /pseudo
     CDS             91..943
                     /locus_tag="RJ267_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343521.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            928..1527
                     /locus_tag="RJ267_000931"
     CDS             928..1527
                     /locus_tag="RJ267_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HDV7388799.1"
                     /translation="MEKILKILLFLPILALSTKAEWVVKSYQEIKNERVIRQTYEQSC
                     GASSLATLLNILDDQKKFDELELLKIMSGQELYTDMVSFADLNDAVKKLDFQSNSYQI
                     NRENLDKLVNIPMLVKIEDDPRFPHFVIIINHEGNYLQVLDPSHGEYISSKSQFFSIW
                     DRYNKGGYALIVAPKKELKPFKLNTPKSLHFDFSPFSLF"
     gene            complement(1576..2418)
                     /gene="fliY"
                     /locus_tag="RJ267_000932"
     CDS             complement(1576..2418)
                     /gene="fliY"
                     /locus_tag="RJ267_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HDV7388800.1"
                     /translation="MINDFLKMFTNECISTIEGLTGKSAEFSEYKEFDVNTSDTLKAP
                     LVYAIFNIANGGKIGILAGAVLMSAIGEWMMGEEEITKNDKLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFSIESCEFVPESVDFKDFKKLFLYDVKIGDLEEQVSLAMDQ
                     TLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKML
                     LKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERL
                     EQLR"
     gene            complement(2415..3494)
                     /gene="fliM"
                     /locus_tag="RJ267_000933"
     CDS             complement(2415..3494)
                     /gene="fliM"
                     /locus_tag="RJ267_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HDV7388801.1"
                     /translation="MAEILSQEEIDALLEVVDDNTDTPIASNSKDEKDERNIVVYDFK
                     RPNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSP
                     TSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILR
                     IIMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNIC
                     YPVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEF
                     LELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEI
                     LEKYEEERKAKASVYDEPEEEDEEI"
     gene            complement(3494..4186)
                     /locus_tag="RJ267_000934"
     CDS             complement(3494..4186)
                     /locus_tag="RJ267_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HDV7388802.1"
                     /translation="MLKEPPKAYAQMLKKEQDELVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNDNFWGFARKRVNGSMLDYLRSLDVMSRNNRKIIK
                     DIDAIMDEYFLEHECEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDEQIELYNED
                     NTLEKIEKEELLEKIHEVLDDLKERDQLIIQLYYYEELSLKEISEILQISESRISQIH
                     KKLLKKLRERLV"
     gene            complement(4167..4523)
                     /locus_tag="RJ267_000935"
     CDS             complement(4167..4523)
                     /locus_tag="RJ267_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388803.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIDEAFDILIFTCFITFMFY
                     VFVHIAIMNFIDVKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNEFKERRRNAKRAA"
     gene            complement(4542..5408)
                     /gene="flhG"
                     /locus_tag="RJ267_000936"
     CDS             complement(4542..5408)
                     /gene="flhG"
                     /locus_tag="RJ267_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HDV7388804.1"
                     /translation="MNNQANKLRNLMSQNGTKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMADEVIV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNPL
                     NLEFLGHLSASKDVSGSIKKRTLFSDENTASSDEIKALASKLLYRLERKVLDNVSNRS
                     FSSFFRKIIERF"
     gene            complement(5401..6855)
                     /gene="flhF"
                     /locus_tag="RJ267_000937"
     CDS             complement(5401..6855)
                     /gene="flhF"
                     /locus_tag="RJ267_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HDV7388805.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRS
                     ALYEVMVAIEESDYEEHLKKQGKSLPAKKSSPKPSSTSLAEEKIRSQIPQEDEDVVLD
                     FSNTRLNTNLNTVKNNDLAKKTYQDFPQNKINPHQNKTLGFDDFKEKLSEVSNEISKV
                     TNTPLENYTPNPNYNKKIENFEKQFEKQINKLNDKIDLLADMMWDDKAEARKNLMIPP
                     EFASIYKQAKESGMLENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVE
                     SDIKKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQY
                     AKMMKLPIIDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAE
                     IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSF
                     FSIGQEVPDDLEVANSDFLVHCILEGFNKGKNNE"
     gene            complement(6865..7338)
                     /gene="folK"
                     /locus_tag="RJ267_000938"
     CDS             complement(6865..7338)
                     /gene="folK"
                     /locus_tag="RJ267_000938"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HDV7388806.1"
                     /translation="MLKIQGVKHFEKSRFFPFFSQNIRSFKYLALIGLGSNIEPEKKR
                     FDMLFRVMMDDKRFKILSTSPMLINEAFGFKEQKDFTNAVMLIQTNLHARALLKVLLY
                     YEVKFKRKRTFKNAPRTLDLDLLYFSQKVKRDKWCEVPHKGAKERVSVILPLGMI"
     gene            complement(7341..7820)
                     /gene="aroQ"
                     /locus_tag="RJ267_000939"
     CDS             complement(7341..7820)
                     /gene="aroQ"
                     /locus_tag="RJ267_000939"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HDV7388807.1"
                     /translation="MKIMIIQGPNVNMLGVREVGIYGAMKMEEIHEQMKLAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAIAAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGTIVGFGPFGYHLALMGIIQICEQIKNLRAMQQAQQTNK"
     gene            7911..9140
                     /locus_tag="RJ267_000940"
     CDS             7911..9140
                     /locus_tag="RJ267_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HDV7388808.1"
                     /translation="MFIVAARYLFLCDEDFTILENQAFVFEDKILELGELDNLKKKYP
                     KAKIIKTPKNSVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSILNAQAKE
                     ELILQSIKKMQKSGIGTIGEISSFGSDLDPCLKASHKGMRIVFFNEILGTNENQVEDK
                     KQEFLKRFENSLKFKNDFFIPAISIHSPYSTHPSLAHFALDLAKKQNLLASTHFLESK
                     AENIWLRESKGGFKKWLENFTLHPKPLYTPKDFVKLFKGVRTLFTHCVYLKEYEWLDK
                     NLHSITHCAFSNRLLSQKSLDLKTALKSGLNIHLGTDGLSSNISLSLLDEMRANLLIH
                     KNFDLLELASKLLQMVTLYPARALNLNLGELKKGKIADFNVFELGECDKKQAPLQFIL
                     NAKEVDKLFIKGKECKF"
     gene            9128..>10017
                     /gene="sppA"
                     /locus_tag="RJ267_000941"
     CDS             9128..>10017
                     /gene="sppA"
                     /locus_tag="RJ267_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HDV7388809.1"
                     /translation="MQILKSFFKALGCGIKFINTYFKTFVLLLIVIWILIPSANSSSN
                     LANLERIDLKGEIFDSSAVLEKIINAKNDSNIKGVLFVIDSPGGAFAPSMELALAIKD
                     LKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSGLANKLGI
                     KEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLNKKDQWA
                     NARVFLAAKAKELGLIDELSNYENAKKELEKLANVSNPVWKEEDKIDKFLNRLEGQTS
                     SLISKSLIEIAYKTNSSFINA"
BASE COUNT         3214 a         1613 c         1506 g         3684 t
ORIGIN      
        1 atactttatt tagaataata aacttttcaa tatcaaggat taaattttaa aattaacttg
       61 agctgattat ttaaaatgta aggattgaca atgaaaaaaa ttttcttaac atttatggtt
      121 ttagttaatt gtgtttttgc tagcgatgaa ctaaatatag acagtttatt taaaaagcaa
      181 ataggcttaa gaagcattgc aagcttttct ttacttagca caggaaacgc aaactcgtat
      241 tctctttatc ctaatataac aataggcgga gatcctacaa tttggaatga tacaaagcaa
      301 gtgtttttaa ctcaaacttt catttatacc ctaacaccta agtttgacat acttatttca
      361 gggggtggaa gctatgcaag acaagaatat acaaattttt tcacaaatgc atattcccat
      421 aaagatcgca taggatttga taatctatgg ctaggtttta tttatacagg cgatagcatt
      481 gcagatttaa ttccacaaat tacctttcaa actgcagttg ttcaaagaga aaaagcaatc
      541 aatcaaacca aaaactttta tctgaaatca caaagcttac aagctagttt gaggggatat
      601 agcgatcctg ttttatagta tttatacagg atttggttat aatcaatcaa gaaaatttaa
      661 aacccttaaa atagagtatg gaaatagtat ttatgtgggt ggggatttat ctattattct
      721 aagtcctaaa attactttag atttaggagc agagcaaaga tttcaaatga aacaaaaaat
      781 caatggctat caaaattctg aagtgcgttc tattccaact ttaagtttag gttctactta
      841 tagcattaat tcagataccg cagtttctgt taatgctagt tttggaggaa gctctgcttc
      901 tcctgatagc atatttggga taagcttatg gaaaaaattc taaaaatttt attattttta
      961 cccattcttg ctttgagtac aaaagccgaa tgggtagtta agtcttatca agaaattaaa
     1021 aacgaaagag taataagaca aacttatgag caatcttgtg gtgcttcatc tttagcaact
     1081 ttacttaata tacttgatga tcaaaaaaag tttgatgaac ttgaactttt aaagattatg
     1141 agcggacaag aactttatac ggatatggta agctttgcag atttaaacga tgcagttaaa
     1201 aaactagact ttcaaagcaa ttcatatcaa atcaatagag aaaacttgga taaacttgta
     1261 aatattccaa tgcttgtaaa aattgaagat gatccacgct ttccacattt tgttataatt
     1321 atcaatcatg aaggtaatta tttacaagtg cttgatccaa gtcatggaga atatataagt
     1381 tctaaaagtc aattttttag tatttgggat agatataata aaggtggtta tgctttaatt
     1441 gttgctccta aaaaagagct aaaacctttt aagttaaaca ctccaaaatc tttacatttt
     1501 gatttcagcc cttttagttt gttttagttt taattcgttt atatttatta ttcttaattt
     1561 gtaggctaaa actttttatc ttagttgttc taatctttct tttttagaac caatttctgt
     1621 aatttgaacg ccgaagttac catcgacaat tactacctcg ccataagcaa ttcttttatc
     1681 cccaattaaa atttcaagcg gatcgtttgc aagttgatta agctccacaa ctgagcctat
     1741 atccatagtt aaaacatctt ttaaaagcat ttttttattg cctatacgca cacgaacagg
     1801 caaacgcaca tccatgataa gattgatatt tttaagctct tcgctaagca ttatcgcttt
     1861 ttcttcagta ttgtgattag aatcagtgct tgtatttcct gtttcagcag gtttcccgct
     1921 taggatgtta tggagtgttt gatccatggc taaagaaact tgttcttcta aatcgcctat
     1981 ttttacatca tataaaaata attttttaaa atctttaaaa tctacgcttt caggcacaaa
     2041 ttcacaagat tctatgctaa aatccatttt tggaatgtct ttttgggctc ctaaggttgt
     2101 agaaaatgct gaaatgatat tttggatggc ttctttagct gcatccattt catcaggacc
     2161 tagtttatcg tttttggtga tctcttcttc acccatcatc cattcaccaa tagcactcat
     2221 taaaacagca ccagctaaaa ttcctatttt tccaccattt gctatattaa atatagcata
     2281 cactaaaggt gcttttaaag tatcgcttgt attgacatca aattctttat attcgctaaa
     2341 ttcagcactt tttcctgtta aaccttcaat ggtgctgatg cattcatttg taaacatttt
     2401 taaaaaatca ttgatcatat ttcttcatcc tcctcttcag gctcatcata aacactggct
     2461 ttagctttac gctcttcttc gtatttttcc aaaatttctt tgatttcatc tttatctgtg
     2521 cgtataagtt ctaaaatttt aatagatttt ctaaaacgat gcaatccaat ttgtgctaag
     2581 aaaacatctt ttttatcgat acttactata gctttatcgt ctgcttctct atcaagcctt
     2641 aaaatatcgc cttgtttaag ttctaaaaat tcatgaacat taattaaggt ttttcctaaa
     2701 attgcctcat ataccacttc agcacgaccg attaaagttt taagctcttt gttacgtgat
     2761 tttttggctg aggtttcacc catcataata tcacggtttg ctaaacggct taatatactt
     2821 tctaaatgta ctacaggata gcagatattt accattccgc ttgaatttcc tatgatgatt
     2881 tccattacta ccatgataac aatctcattt tgagatacga tttgcacaac atttggactt
     2941 gattctttag cttctatact aggataaatt tcagttacgg tagcccagct ttctttaagt
     3001 ctttgcataa tgatacgcaa aatagaatca agtaaattaa gctcaatatc cgtaagctca
     3061 cgcgaagctt catagctatc gccttgacca cctaaaagcc tgtctatcat aggaaaagct
     3121 atgcttggat tgatttctaa aacacagttt ccatctaaag gtttgataga aaaaacatta
     3181 aaacttgttg ggcttggcaa agacattaaa aactctccat aagtcatctg atcgactgaa
     3241 tgaagtttag tttcaacaat acttctcatc atcgatgaaa tttgagaggc taaatttctt
     3301 gctaatttat catgtatgcc tttaatcgtc ctaagttgtt cttttgaaac tctgttggga
     3361 cgcttaaaat catatacaac gatatttctt tcatcttttt catcttttga atttgaggct
     3421 atgggtgtgt cggtgttatc atcgacaact tcaagtagag catcaatttc ttcttgggag
     3481 agtatctcag ccattacact agcctttctc taagtttttt aagaagtttt ttgtgaattt
     3541 gtgaaattct gctttcactg atttgtaaaa tttcactgat ttcttttagg cttaattctt
     3601 cataataata aagctgaata attaactgat cgcgctcttt aagatcatct agcacttcgt
     3661 gaattttttc taaaagttct tctttttcaa ttttttctaa agtattgtct tcattataaa
     3721 gttcgatttg ctcatcaatg ggcagggtat agctaatagc atgagctgtt cttacttctt
     3781 tgattttttc tacatctaaa tcaagttttt tggctagata ctcatcatca ggttcgcatt
     3841 catgttctaa aaaatattca tccatgattg catcaatatc tttaataatt ttacgattat
     3901 ttcgactcat tacatcaaga cttctaagat aatcaagcat agagccgtta actctttttc
     3961 ttgcaaaacc ccagaagtta tcattttgtt ctttatcgta acggcgtgaa agctttatca
     4021 tttcttcaac gcctatgcta ataagatcat taacatctat acttgaaggc aagcgttctt
     4081 ttagtctaaa agccatagca cgcagagctg gcatgtaaga aagcacaagc tcatcttgct
     4141 ctttctttag catttgtgca taagctttag gcggctcttt tagcatttct tcgtctttct
     4201 ttgaattcat ttttctttag ctcttctctt tcttcattga gcttttctaa aattatatcc
     4261 attttctttt cacgaataac taaatcgttg ataatattat tgctagtttt ttcataatcg
     4321 tgtttattaa agattctgcc actaattttc tttacatcta taaaattcat aatagcaata
     4381 tgaacaaaaa cataaaacat aaaagtaata aaacaagtaa aaatcagtat atcaaaggct
     4441 tcatctatac taataatgct aaatgcaagt cctataaaaa atccacaaac agtgaaaaat
     4501 gctacgtaat tttctggcct cataatctct tctctttatt gctaaaatct ttcaataatt
     4561 tttctaaaaa aacttgaaaa actacgattt gaaacattat caagcacttt ccgttccaat
     4621 ctatataaaa gcttggaagc tagggcttta atctcatcac ttgaggctgt gttttcatcg
     4681 ctaaataaag ttcttttttt aatactacca cttacatctt tagaagcgct taaatgacct
     4741 aagaattcta aatttaaagg atttttaatg tttgcatctg caactttttt aatattttca
     4801 aaaactttta aagcttcatt ttcatttttt acaacattaa agagcattag taaattttct
     4861 tttgtcttag aagttgtttt tatggttgca tacgcatcag tgattgctgc aggatcagga
     4921 acagttacta ctataacttc atcagccatt tctaaaaaat ttaaaatatt tccaccaata
     4981 cccgcgcctg tgtcgataat aagaaaatca agttcatcta aaatacttgc ttgatttaaa
     5041 aatctctcgt aaatattttt atcattatat tttaaaatct catctccact ttcgcctggg
     5101 atgagccata aatttggctt aacttctatt aaaatgtctt ccaaggagca ttctccgcgt
     5161 aaaacatgca agagattttt ttgtatgcgt acatttaaaa tgacatccaa atttgccaag
     5221 ccaatatcag catcaaaaag cccaacttta tagccattat ttgctaaaac attggctaga
     5281 ttcgcgctaa tcgtactttt tccaacgcca ccttttccac ttgtaatagc tataaaatga
     5341 gtgttttggg attttttggt tccattttga ctcatgagat tgcgaagttt atttgcttgg
     5401 ttattcatta ttttttcctt tgttaaaccc ttctaaaata caatgaacta gaaaatcact
     5461 attggctact tctaaatcat ctggcacttc ttgtcctata gagaaaaagc ttagaggaat
     5521 atttgtttca taaacaagag agaagatatt tccaaaaacc tttgtttcat caaatttagt
     5581 aataatcaaa gtatcaatat ttaagaatga aaaattttta taaatttcca ttaaatcttc
     5641 atgtttggtg tttgcagaaa ccactaaatt tacatcaatt tctgcatttg agtgcattaa
     5701 aaattcttta gttttagcaa gtttgctttg atcgtattgt gaatttccta tagtatcaac
     5761 taaaattact tcgcaattat ttaagctttt tatcgcttca tctaaatcct ttggttctat
     5821 gctatcaata ataggaagtt tcatcatttt tgcatactga aaaagttgct caactgcacc
     5881 gattctataa gtatcaagcg taataatacc tgttttataa cgcttatctc cataagcata
     5941 gcgaaaagct aacttagcta aggttgttgt ttttccgact cctgttgggc ctactagcat
     6001 catgattttt tgttttttta tatcgctttc aacacgacaa ggcaagatat ttcttaaaag
     6061 tgagtgaaaa tatctttgaa ccgcatcttt gttggttttc atagcagctg gcatattttc
     6121 tatagttgct ttcataatcg cttctagatg attttcaagc attccacttt ctttggcttg
     6181 tttataaata cttgcaaatt caggaggtat cataagattt tttctagctt cagctttatc
     6241 gtcccacatc atatctgcaa gaagatctat tttatcatta agcttgttga tttgtttttc
     6301 aaattgcttt tcaaaatttt ctattttttt attataattt ggattagggg tgtaattttc
     6361 taaaggtgtg tttgtgactt tagaaatttc attgctaact tcacttagtt tttctttgaa
     6421 atcatcaaag cctagagtct tattttgatg agggttgatt ttgttttgtg gaaaatcttg
     6481 ataggttttt ttagctaagt cattgttttt tacagtgttt aaatttgtat ttaagcgagt
     6541 gtttgagaaa tccaagacta catcttcatc ttcttgaggg atttgagatc taattttttc
     6601 ttctgcaaga gaggtagagg atggttttgg cgagcttttt tttgcaggta aagattttcc
     6661 ttgttttttt aagtgttctt catagtcgct ttcttctatg gctaccataa cctcataaag
     6721 cgcactgcga tttaaggttt taggacgaat ttgtttattt gttataatta aagctttatc
     6781 tccgtaatct tcttttactt tgggtataat ttgttctgta tcttcaacgg taaaagtatg
     6841 tataagttgt cccatttata ttccttatat catgcctaaa ggcaaaatta cactcactct
     6901 ttctttagcc cctttatgag gcacctcaca ccacttatca cgcttgactt tttgtgaaaa
     6961 gtataaaaga tctaaatcaa gcgttctagg agcgtttttg aaagttctct tgcgtttaaa
     7021 ttttacttca tagtaaagta aaactttcaa aagtgctcgt gcatgcaaat tagtttgtat
     7081 caacataaca gcattggtaa aatctttttg ctctttaaaa ccaaaggctt catttatcaa
     7141 cataggagat gtggataaaa ttttaaatct tttatcatcc atcattactc gaaaaagcat
     7201 atcaaatctt tttttttcgg gttctatatt gcttcctaag cctataagag ctaaatattt
     7261 aaaagatcgt atattttgac taaaaaaagg aaaaaaacga cttttttcaa agtgttttac
     7321 tccttgaatt tttagcatta ttatttattc gtttgttgtg cttgttgcat tgcgcgcaaa
     7381 ttttttattt gttcgcaaat ttgaattata cccattaaag ccaagtgata gccaaaagga
     7441 ccaaaaccaa caatagttcc agaacataca ggcgctataa gacttttttg acgaaattct
     7501 tctctgcgat aaacattgct aatatgtact tcaattgtag gcaaagctac tgctgcaata
     7561 gcatcgcgaa tagctactga agtatgagta tagcctgctg cattgataat aattccatca
     7621 actgttccaa ggcattcttg aattttatct acgatttcac cttcaaaatt actttggaaa
     7681 aagtcaagtt ctacattgtt ttgcgatgct gcaagtttca tttgctcatg aatttcttcc
     7741 attttcatag caccataaat tcccacttct cttacgccaa gcatattaac atttgggcct
     7801 tggataatca ttattttcat ggatttaacc ttaaaaattt atttttaacc ttttattata
     7861 acattttaaa aataaatttt tgctacaatg taatttttga aaggaaaatc gtgtttatag
     7921 ttgctgcaag atatcttttt ttatgcgatg aagattttac aatactagaa aatcaagcct
     7981 ttgtttttga agataaaatt ttagaattgg gtgaattgga taatttaaaa aaaaaatatc
     8041 ctaaggctaa aatcatcaaa acacctaaaa attcggttat tttacctgct tttataaatc
     8101 ctcacacaca tttagaattt agtgcaaatt caacaacttt acattttgga gaatttttaa
     8161 tttggcttaa aagtgttata aattctcgtt ccatattaaa tgcacaggcc aaagaagaat
     8221 taatacttca aagcattaaa aaaatgcaaa aaagtggtat aggcactata ggtgaaattt
     8281 caagttttgg gagtgattta gatccttgct taaaggctag tcacaagggt atgcgtatag
     8341 tattttttaa tgaaattttg ggtacaaatg aaaatcaagt tgaagataaa aaacaagaat
     8401 ttttaaaaag atttgaaaat tctttgaaat ttaaaaatga tttttttatc ccggcaattt
     8461 cgattcattc tccttattca actcatccta gtttggctca ttttgctctt gatttagcta
     8521 aaaagcaaaa tttactagct agtacgcatt ttttagaaag taaggctgaa aatatctggc
     8581 ttagagagtc taaagggggt tttaaaaaat ggcttgaaaa tttcacactt catcctaagc
     8641 ctctttatac accaaaggat tttgttaaac tttttaaagg agtaaggact ctttttacgc
     8701 attgtgttta tctaaaagaa tatgaatggt tagataaaaa tttacattct attacacatt
     8761 gtgcattttc aaatcgcctt ttaagtcaaa aaagcttaga tttaaaaacg gctttaaaaa
     8821 gtggattaaa tatccattta ggaaccgatg gacttagctc aaatatttca ttgtctttac
     8881 ttgatgaaat gcgcgcgaat ttgcttatac ataagaattt tgatttatta gagttagcct
     8941 ctaagctttt gcaaatggta acactttatc ctgcaagggc tttaaattta aatttaggag
     9001 agcttaaaaa aggtaaaatt gctgatttta acgtatttga gctaggagaa tgtgataaaa
     9061 agcaagctcc tttgcagttt attttaaatg ctaaggaagt ggataaatta tttataaaag
     9121 gaaaagaatg caaattttaa aatcattttt taaggcttta ggatgcggta taaaatttat
     9181 caatacttat tttaaaacct ttgttttatt gttgattgtt atatggattt taatacctag
     9241 tgcaaattca agctctaatc ttgcaaattt agaacgcatt gatttaaagg gtgaaatttt
     9301 tgacagctct gcggttttgg aaaaaattat caatgctaaa aatgatagca atatcaaagg
     9361 agtgcttttt gttatagact ctcctggtgg agcttttgct cctagcatgg aactagctct
     9421 agctataaag gatttaaaaa ttaaaaagcc tgtgcttgtt tatgcaagcg gaactatggc
     9481 aagtggaagt tatttagcag gagttggagc aaataaaatt ttagccaatc cggcaagttt
     9541 tataggctct atcggtgtga ttatgcaagg agctgattta agcggattgg ctaataaact
     9601 cggtattaaa gaacaaacta ttcaagcggg tgaatttaaa agtgctggaa cttttgcaag
     9661 agcttggaat gagaatgaaa gaaatttttt acagggttta attgatcaaa gttatgatct
     9721 ttttacaggt tttgttgcca aggaaagagc attagatctt aacaaaaaag atcaatgggc
     9781 aaatgcaaga gtgtttttag ctgccaaggc taaggagctt ggtcttatag atgagcttag
     9841 taattatgaa aatgctaaaa aggagcttga aaaacttgct aatgtttcaa atcctgtttg
     9901 gaaagaagaa gataagattg ataaatttct taaccgccta gaaggacaaa catcaagctt
     9961 gataagtaaa agcttaatcg aaatcgctta taaaactaat agcagtttta taaacgc
//
LOCUS       DAPIWQ010000054         9909 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.054, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000054 DAPIWQ010000000
VERSION     DAPIWQ010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9909)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9909)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9909
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.054"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1132)
                     /locus_tag="RJ267_000942"
     CDS             complement(<1..1132)
                     /locus_tag="RJ267_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388810.1"
                     /translation="MTINSANPYQNLTLSNPLQNSSALNLIKDSKALDQEGNENSLEQ
                     LSYIFNNTTYASEFGFRINEEGFFDKDLNKIANIPESYDINIKSVRSIAKELAKQDEN
                     LNYNKIDLPYLLNSYHSSLKSINSEFLQDDNAYLSRDLISKLSSGFSTDNGEFLGQIS
                     RIYNNQEEIDLALSNITNLNTLMLDNKITNFHFDKAIENTSSNEILKPYLTKNAEVSK
                     SGLLMNFIYHDIKTQNEKEFNFFMKPATLELSSHQNLQKILKGETDIEDYIKKENEKK
                     MSFDLYLYINGVDKKTSTQDKLSVFFQQYINYQKDMDLREFANSSSIFQIYIDQNRND
                     FDALKKQYQNQSQDTQRLEEANQLRSSSIENFLDRRQKQANIN"
     gene            1288..1479
                     /gene="rpmI"
                     /locus_tag="RJ267_000943"
     CDS             1288..1479
                     /gene="rpmI"
                     /locus_tag="RJ267_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HDV7388811.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRGLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            1573..1926
                     /gene="rplT"
                     /locus_tag="RJ267_000944"
     CDS             1573..1926
                     /gene="rplT"
                     /locus_tag="RJ267_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HDV7388812.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSRFINGLKKAGIELDRKILADLAMND
                     AAAFAKIAEAAKKAL"
     gene            complement(1979..2791)
                     /locus_tag="RJ267_000945"
     CDS             complement(1979..2791)
                     /locus_tag="RJ267_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HDV7388813.1"
                     /translation="MGIAKSLVAIFFYEVENFNDFKPRYLKTFIQKYSDFKYYYLNIR
                     AQKLEMTNEINKIILNQLKQNTSEIDKNTSIFKEIFEELENIRRSLTTISESFTNFTN
                     YLEYNLYQSEEKMNLEKEVQSSLKNIDQLNSILDLISGIAEQTILLSLNAGIEAARAG
                     KLGRGFAVVADEVRKLSENTQMGLGEMEGAIKLVIQTIQSIAKSSNSSTQEMNFIRDK
                     TNEFSKIISNLINSGKEISDKLEQRSNVSEDFEKNVNQLKCYEDVLAKLNQY"
     gene            complement(2795..3157)
                     /locus_tag="RJ267_000946"
                     /pseudo
     CDS             complement(2795..3157)
                     /locus_tag="RJ267_000946"
                     /inference="COORDINATES: protein motif:HMM:NF021926.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FIST C-terminal domain-containing protein"
     gene            complement(3082..3636)
                     /locus_tag="RJ267_000947"
     CDS             complement(3082..3636)
                     /locus_tag="RJ267_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HDV7388814.1"
                     /translation="MILFSEDMIENLCTNKIKLFSDIKDYTERKKLIEKEVLFINIPF
                     EAHCINTLYYLIYDGLSQSESSLLELLYKHNPYPCALVGGGSSGNMDFSGAFIFYNGE
                     ILKNQALSIHVQFKPKYRFNLMKSQNFNPQSNITFTILDVSLYDKTVRELINKKPFRL
                     KLYVIILTALLKNLKIKCKNILLL"
     gene            4118..4975
                     /gene="cheP"
                     /locus_tag="RJ267_000948"
     CDS             4118..4975
                     /gene="cheP"
                     /locus_tag="RJ267_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheP"
                     /protein_id="HDV7388815.1"
                     /translation="MIGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAE
                     IISSDPLMTAKLLQLANSPYYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKID
                     VSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLGIVIFSNFLIQN
                     HKDKDFLAFLNKNENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESICFVRTPHAA
                     REKVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLKEAKTQGINFDLNNLLSKLPNK
                     AKENLNKED"
     gene            5003..5482
                     /gene="cheQ"
                     /locus_tag="RJ267_000949"
     CDS             5003..5482
                     /gene="cheQ"
                     /locus_tag="RJ267_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HDV7388816.1"
                     /translation="MMKSLILPPNEFLDHYILNAEFHRFAGISKNAYKFWKNAEIGRY
                     QGTRIIFLHRNCILEKHQQALRQCSGLNGFVLASAFCSFTGLAPSHLVEKNNSSIYKL
                     LELKEICGIKFVNLKKFYDFLGLNYHQHIYIEKCHFFSPAPFEKRIKITESMCVGYY"
     gene            complement(5451..6761)
                     /locus_tag="RJ267_000950"
     CDS             complement(5451..6761)
                     /locus_tag="RJ267_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7388817.1"
                     /translation="MSKTLNQKDIKVLGLSSLGGTLEFYDFIIFVFFANYISTNFFPK
                     DLSSFWQMFNTYGIFAAGYLARPLGGVILAHFGDKFGRKRMFMISILLMVIPTFTLAF
                     IPNYESIGFLCIVLLVFIRICQGIAIGGELPGAWVFVYEHAPQGQKRTYLGILTASVV
                     GGILLGSLVFLIMNKIYTQEELHEWAWRIPFFLGGIFGIISAYLRKFLRETPVFEQMK
                     KDKALEKFPLKEVFKKAKMGIVLSMMITWVLTGCIVVMILLMPSYMAKILQINTSIQT
                     YLQIGGILLICLGCIISGILADKIGVIKSCVFFSVFFGIASLLYFNTLYRQNADFNLV
                     ACLYLLVCFFSGVMNFCPLIMSEVFDAKIKFSGLSFSYNIAYAIAGGLTPQLAFFLHS
                     FALNNLSNFWRFSLGLYVFFLAIIALLCAFIFSYLNNTQRTYSQ"
     gene            complement(6764..6919)
                     /locus_tag="RJ267_000951"
     CDS             complement(6764..6919)
                     /locus_tag="RJ267_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HDV7388818.1"
                     /translation="MAYEDEEDLNYDDYENEDEEYPQNHHKNYNYDDDDYEYDDDNND
                     DDFYEMD"
     gene            7012..7485
                     /gene="moaC"
                     /locus_tag="RJ267_000952"
     CDS             7012..7485
                     /gene="moaC"
                     /locus_tag="RJ267_000952"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HDV7388819.1"
                     /translation="MKLSHLDEKNHPKMVDVSDKNITLRIATASGIIYMSQEAFDVIK
                     NNTAKKGPVLQTAIVAAIMGVKKTSEIIPMCHPLMLSKVETNIVEFVKECAFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKSMRITDIVLESKEGGKSGKFVRS"
     gene            7463..7726
                     /locus_tag="RJ267_000953"
     CDS             7463..7726
                     /locus_tag="RJ267_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 domain-containing protein"
                     /protein_id="HDV7388820.1"
                     /translation="MVNLCDLKKEPQINYPTFWDYKVIFEVHVKASEIFEEILGQREY
                     KFKHSNSSASGKYQSYLLNVYVDSKKDRLDIFDKLKAKAKFVL"
     gene            7716..8876
                     /locus_tag="RJ267_000954"
     CDS             7716..8876
                     /locus_tag="RJ267_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388821.1"
                     /translation="MYFKKEGKMKNTLIIFENSLSNLGKDEASDLLEDLSFNLAYKQI
                     SHNPHETKKVLNSLLVEFLTILKKLDFFDDENVTKVIKALVKASIVDAQNSLYEYISE
                     AELLNKQIENQKNLIKNQISDNFFEFENILQECSFCDEFSGGLNDAILFDIEMLGILK
                     ETAESAFLTTLEKAEDIELTSSEIAKNLVYNAICEAHFEKERILKISSIILNTAFEIA
                     NESMAYAKDLCLGVIKGTRDGIVLAMEKFKASLTYANFEEDVSLKSKELIGIEDDFIA
                     LLKKEIQLQNDPCKSIVENLLEHELDNLFAKFRRLAGESREQLILVLNDIKKNPKIND
                     FNKLTQRKLNRFKQEIFELEKIASEKYKDLNSKKAKKLGVRLWEKAKKFVKK"
     gene            complement(8895..9653)
                     /gene="xth"
                     /locus_tag="RJ267_000955"
     CDS             complement(8895..9653)
                     /gene="xth"
                     /locus_tag="RJ267_000955"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HDV7388822.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIAQEQIDFIGFQEIKAHEDKFP
                     KKIYEYPFKHMYFNSAKRAGYSGVMSLCNFNSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLNFKMQFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDY
                     FFISKGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
     gene            9771..>9909
                     /locus_tag="RJ267_000956"
     CDS             9771..>9909
                     /locus_tag="RJ267_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A/FlgG phosphoethanolamine transferase
                     EptC"
                     /protein_id="HDV7388823.1"
                     /translation="MLRLTWFQFTFFNSLMIVLLNFNLFYFVYEKNTQNWLITFVFIV
                     AY"
BASE COUNT         3536 a         1332 c         1418 g         3623 t
ORIGIN      
        1 tatttatatt tgcttgtttt tgacgacgat ctaaaaaatt ttctatagag ctagaacgta
       61 gttgatttgc ttcttctaat ctttgcgtat cttggctttg gttttgatat tgttttttaa
      121 gagcatcaaa atcattgcga ttttgatcga tataaatttg aaatattgaa cttgaatttg
      181 caaattctct taaatccata tctttttggt agttaatata ttgttgaaaa aatacagata
      241 gtttgtcttg agtgcttgtt tttttatcta cgccattaat ataaagataa agatcaaaac
      301 tcatcttttt ttcattttct tttttgatgt aatcttctat atctgtttcg cccttgagaa
      361 ttttttgtaa attttgatga gagcttagtt ctaaagtggc aggtttcata aaaaagttaa
      421 attctttttc gttttgagtt tttatatcat ggtagataaa attcattaaa agaccagatt
      481 ttgatacttc tgcattttta gttaaataag gttttaaaat ttcattagaa gaagtgtttt
      541 ctatggcttt atcaaaatga aaattagtta ttttattatc taacattaaa gtatttaaat
      601 ttgtgatatt gcttaatgcc aaatcaattt cttcttgatt gttgtaaatt cttgaaattt
      661 ggcctaaaaa ttctccatta tctgttgaaa aacctgatga tagttttgaa ataagatcgc
      721 gacttaaata agcattatca tcttgtaaaa attctgaatt tatagatttt aatgaactat
      781 gatagctatt taaaagataa ggtagatcaa ttttattgta gtttaaattt tcgtcttgtt
      841 ttgcgagttc ttttgctatg cttctaacac ttttaatgtt gatatcataa gattctggta
      901 tatttgcaat tttatttaaa tctttatcaa aaaaaccttc ttcattgatt ctaaatccaa
      961 attcactagc ataagtggta ttattaaaaa tataacttaa ttgttctaag ctattttcat
     1021 ttccttcttg atccaaagct ttactatctt taatcaaatt tagagcagag ctattctgca
     1081 aaggattaga taaggttaaa ttttgatatg gatttgccga atttatagtc attttaaatc
     1141 tttccaaaat attgctgatt ttttataagc aaaaggtgtg ccaagttttt taaaaattaa
     1201 attcagtcaa aaattagaaa aaatttgata gtatttagct tttcttttaa tttgaaaaat
     1261 aaaaatttat ctaaataagg aaagcgtatg ccaaagatga aaagcgttaa aagcgcagtt
     1321 aaacgcttca aagtaggtaa aaataaaatc aaaagaggct cagcttttag aagtcatatt
     1381 ttgactaaaa aacctgcaaa aagaatgcgt ggtcttcgca cagctaaata tgtgcatagc
     1441 acaaatgtaa aagctgttga aaaaatgcta ggaatttaag tttttgacta aaagtcattc
     1501 aaactcccct ctgagataaa atttcaaggg taagctccaa atttggacgc cactttatga
     1561 aaggaaataa aaatggcaag agtaaaaaca ggtgttgtta gacgccgcag acataaaaaa
     1621 gttttaaaat tagcgcgtgg tttttatagt ggacgccgca aacattttag aaaagcaaaa
     1681 gaacaattag aaagaagtct agtctatgct tatcgtgata gacgccgcaa aaaaagagac
     1741 ttccgtcgtc tttggattgt gcgtatcaat gctgcttgca gactcaatga tttaagttat
     1801 tcaagattta tcaatggtct taaaaaagca ggcattgaac ttgatagaaa aattctagca
     1861 gatttagcta tgaatgatgc tgctgctttt gcaaaaattg cagaggctgc aaaaaaagca
     1921 ctttgatttt ttagtataag aatttcaaga tttttgattc ttgaaattct taattttttc
     1981 agtattgatt taatttagct agaacatctt cataacattt gagttgattt acattttttt
     2041 caaaatcttc gctgacattg cttctttgtt ccaatttatc tgaaatttct ttacctgaat
     2101 ttataagatt tgaaatgatt ttggaaaatt cattagtttt atctcttata aaattcattt
     2161 cttgagtact agaattggaa ctttttgcaa tggattgtat ggtctgaata actaatttga
     2221 tagctccttc catttcacct agacccattt gggtattttc tgaaagtttt ctaacttcat
     2281 cagctacaac tgcaaatcca cgaccaagtt ttccagctct agcagcttct atacctgcat
     2341 ttaaagataa aaggatagtt tgttcagcaa tccctgaaat aagatctaaa atactattta
     2401 attgatctat atttttcaaa gaggattgta cttctttttc taaattcatt ttttcttcgc
     2461 tttggtaaag gttgtattct aggtagttag tgaaattggt aaaactttca ctaatagttg
     2521 taagacttct tcttatattt tcaagttctt caaaaatttc tttaaatata cttgtatttt
     2581 tatcaatttc tgatgtattt tgtttgagtt gatttaagat tattttatta atctcatttg
     2641 tcatttctag tttttgagct cttatattaa gataatagta tttaaaatcg ctgtattttt
     2701 gtatgaaagt ttttaaatat ctaggtttga aatcattaaa attttcaact tcataaaaaa
     2761 atattgccac taaacttttt gcaattccca ctccataaat ttctccaaaa ctagaaaaac
     2821 caactatagg aaaatcatta aaatggattt gatttaaatg ttctttgttg tgaagccttc
     2881 ttaagataca atcgttaaaa attgctccta gtggttttgg tttattaaga gaaaattttt
     2941 cataatcttt ttttatagct tcaataaaat ttgttttttt aagcaagctt aattcatgag
     3001 cgctttctat atcacaataa ctaaataatg ttttatttgg gttgatttcc ataggggaaa
     3061 taagatagtc ttctccaatt tttaaagcaa aagtatattc ttgcatttta tttttaagtt
     3121 cttcaaaagt gcagttaaaa taattacata aagcttcaac cggaaaggtt ttttattaat
     3181 caattcgcgt acggttttat catataagct tacatcaagt atggtaaagg tgatattgct
     3241 ttgaggatta aaattttgag acttcattaa attaaaacgg tatttaggtt taaattgaac
     3301 atgtatgctt aaagcttgat tttttaatat ttctccatta taaaatataa atgctccgct
     3361 aaagtccatg tttccgctag acccaccccc tactaaagca caaggatagg ggttgtgttt
     3421 gtacaaaagt tctaaaagag aactttcgct ttgacttaaa ccatcataaa ttaaataata
     3481 caaagtattt atgcagtgtg cttcaaaagg tatatttata aataaaactt ctttttctat
     3541 cagttttttt ctttctgtat aatcttttat atcactaaaa agcttgattt tatttgtgca
     3601 aagattttct atcatatctt cactaaaaag tatcaagctt attccttgga tattttgttt
     3661 ataaggactg ttttcaatgt ttgagttaga atcaaggttg cataataaat cagtagcact
     3721 gcttaagatg atatcacatt gctcatttat agaattttga atcttatttc ctatgatcgc
     3781 tagattaagt tgattgacac aaagcctata attaattttg gcttgatgtt tatttttttt
     3841 aatttttctt caagttcatt ttattgaaga tatagagctt ctaaaacttt tttacttctt
     3901 ctttttttgt tgagctttta tttttaaaat taaaaaaaca tcaattttac tccattaaaa
     3961 ctatttttta attactagtt aactaaatca agacaccata aattcgacat ttatttgtaa
     4021 tttttattat accttaagtc ataaaaaatg caataagtaa attaaaattt agatataatt
     4081 gcaaattata ataatattaa ttaaggataa attaaatatg attggagata tgaatgagct
     4141 tttattaaaa agcgttgaag tattgccacc tttacctgat actgtaagta agttaagaaa
     4201 atatgtgagc gaggctaatt caaatataga aactatgaaa gttgctgaaa tcatttcaag
     4261 cgatccgttg atgacggcta agcttttgca attagcaaat tctccttatt atggttttac
     4321 aagagaaatt acaaccataa atcaagtgat tactttatta ggcgttggta atatcatcaa
     4381 tatagttatg gctgactcca ttagagataa ttttaaaata gacgtttcac cttatggttt
     4441 aaatactcaa aattttttaa aaacgtgcaa tgaagaggca acttttatcg caaattggct
     4501 taatgatgaa gataaaaaac tttctcatct tttagttcct tgtgcaatgc ttttaaggct
     4561 tggtattgtt attttttcaa attttcttat acaaaatcat aaggataagg attttttagc
     4621 ttttttaaat aaaaatgaaa atcttgcttt agcggagaat gaatttttag gcgtagatca
     4681 tatttctttc ttgggatttt tgttacatcg ttggaatttt gatgatgttt tgattgaaag
     4741 tatatgtttt gttcgcactc ctcatgctgc tcgcgaaaaa gtgaaaaaat ccgcttatgc
     4801 tttagcaata acagatcatc tttttgctcc gcatgatggt tcttctccat ttaacgcaaa
     4861 agctgcagtt gctttactta aagaggcaaa aactcaagga attaattttg atttaaacaa
     4921 tcttttatct aagcttccta acaaagctaa ggaaaattta aacaaagaag attaaagagc
     4981 ctttttaagg ctctaaattg tagtgatgaa aagtttaatc ttacctccta atgaattttt
     5041 agatcactat attttaaacg ctgaatttca tcgttttgct ggaatttcaa aaaatgctta
     5101 taaattttgg aaaaatgcag aaataggtag atatcaagga acaagaatta tatttttgca
     5161 tagaaattgc attttagaaa aacatcagca agctttaagg caatgtagtg gtttaaatgg
     5221 ttttgtattg gcaagtgctt tttgttcttt tactggatta gctccctctc atttagtgga
     5281 aaaaaataat tcttctattt ataaactttt agagcttaag gaaatttgtg ggattaaatt
     5341 tgttaattta aaaaaatttt atgatttttt agggctaaat tatcatcagc atatttatat
     5401 agaaaaatgc cattttttta gcccagctcc ttttgaaaag cgtattaaaa tcactgagag
     5461 tatgtgcgtt gggtattatt aagataagaa aaaataaatg cacatagcaa agctataata
     5521 gccaaaaaga aaacataaag tcccaaagaa aaacgccaaa aattacttaa attatttaag
     5581 gcaaaactat gcaagaaaaa agcaagttgc ggagttaaac ctccagctat agcataagca
     5641 atattatatg aaaaagaaag tcctgaaaat ttaatttttg catcaaatac ttcactcatt
     5701 attaaagggc aaaaattcat cactccgcta aaaaaacata caagtaaata taagcaagct
     5761 actaggttaa aatcagcatt ttgtctatat aaagtattaa aataaagcaa gcttgcaatt
     5821 ccaaaaaaaa cactaaaaaa tacacaagat ttaataacgc ctattttatc cgctaaaatt
     5881 ccacttataa tacaccctag gcaaataagc aaaattccac ctatttgaag ataggtttgt
     5941 atagaagtat taatttgaag tatttttgcc atataactag gcataagcaa aatcattaca
     6001 acaatacaac ctgtcaaaac ccaagtaatc atcatagaaa gaacaattcc cattttagct
     6061 tttttaaaca cttcttttaa aggaaatttt tctaaagcct tgtctttttt catttgttca
     6121 aaaacaggag tttctcttaa aaattttctc aaataagcag aaataatccc aaaaattcca
     6181 cctaaaaaga atggaattct ccaagcccat tcatgaagtt cttcttgggt ataaatttta
     6241 ttcataatta aaaaaaccaa actacctaat aaaattccac ctacaaccga agcggttaaa
     6301 attcccaaat aagttctttt ttgaccttgt ggtgcgtgtt cgtatacaaa aacccaagct
     6361 ccagggagtt ccccgcctat agctatacct tgacaaatgc gtataaaaac taaaagcaca
     6421 atacaaagaa aacctatact ttcataattt ggaataaaag ctagagtaaa agttggaata
     6481 accattaaca aaatactaat cataaacatt cttttgcgtc caaatttatc tccaaaatgt
     6541 gccagtatca caccccctaa aggacgtgct aaatatccag ctgcaaatat tccataagta
     6601 ttaaacattt gccaaaaact acttaaatct tttggaaaaa agtttgttga aatataattt
     6661 gcaaaaaata caaaaataat aaaatcataa aattctaaag ttccacctaa tgatgaaagt
     6721 cctaaaactt ttatatcttt ttggttaagg gttttgctca ttcttaatcc atctcataaa
     6781 aatcatcatc attgttatca tcatcgtatt cataatcatc atcatcgtaa ttataatttt
     6841 tatggtgatt ttgtggatat tcttcatctt cgttttcata atcatcgtaa tttaaatctt
     6901 cttcatcttc ataagccatt gttttctcct taaataaaaa tacaaagctt attttatctt
     6961 aaatttgttt ggttttgcta taatttttat aattttttaa aaggtgaatt tatgaaatta
     7021 agtcatttag atgaaaaaaa tcatcctaaa atggtagatg taagcgataa aaatattact
     7081 ttaagaatag ccacagctag tggtataata tatatgagtc aagaagcttt tgatgtaatt
     7141 aaaaacaata ccgcaaaaaa aggtcctgtt cttcaaacag ctattgttgc ggctataatg
     7201 ggggttaaaa aaacaagtga aattattcct atgtgccatc ctttgatgct ttctaaagtt
     7261 gaaactaata ttgtggaatt tgttaaagaa tgtgcattta agcttattgt aacagttaag
     7321 tgtgaaggta aaacaggtgt tgaaatggaa gctttaagtg gagttagtat aggactttta
     7381 actatatatg atatgatcaa ggctatagat aaatcaatga gaattacgga tatagtgctt
     7441 gaaagcaaag aaggaggtaa aagtggtaaa tttgtgcgat cttaaaaaag aacctcagat
     7501 caattatcct actttttggg attataaggt gatttttgag gtgcatgtta aggcaagtga
     7561 aatttttgaa gaaattttag gtcaaagaga atataaattt aaacattcga attcaagtgc
     7621 gagtggaaaa tatcaaagtt atttgttaaa tgtttatgtt gatagcaaaa aagatcgttt
     7681 ggatatattt gataaattaa aagctaaagc aaaatttgta ctttaagaaa gaaggaaaaa
     7741 tgaaaaatac tttaattatt tttgaaaatt ctttatcaaa tctcggtaaa gatgaagcaa
     7801 gtgatttact tgaagacttg agttttaatc ttgcgtataa gcaaatttca cataatcctc
     7861 atgaaacaaa aaaagtttta aattctcttt tggttgaatt tttaactatt ttgaaaaaac
     7921 ttgatttttt tgatgatgaa aatgttacaa aggttatcaa agctttggtt aaggcgagta
     7981 ttgtagatgc tcaaaattca ctttatgagt atattagcga agctgaatta ttaaacaaac
     8041 agattgaaaa tcaaaagaat ttgattaaaa atcaaatcag cgataatttt tttgaattcg
     8101 agaatatttt acaagaatgt tctttttgtg atgaatttag tggtggttta aatgatgcta
     8161 ttttatttga tatagaaatg cttggaattt taaaagaaac cgctgaaagt gcttttttaa
     8221 ctacattaga aaaggctgaa gatatagaac ttacaagtag tgaaatagct aaaaatctcg
     8281 tatataatgc catttgtgaa gctcattttg aaaaagaaag aattttaaaa atttcaagta
     8341 ttattttaaa taccgctttt gaaatagcta atgaatctat ggcttatgca aaagatcttt
     8401 gtttaggcgt gattaaaggc acaagggatg gtattgtttt ggcaatggaa aaatttaaag
     8461 cttcattaac ttatgcaaat tttgaagaag atgttagttt aaaaagcaaa gaactaatag
     8521 gtatagaaga tgattttatt gctcttttaa aaaaagagat tcaattacaa aatgatcctt
     8581 gtaagagtat agttgagaat ttgctagaac atgaacttga taatcttttt gctaaattta
     8641 gacgtcttgc aggtgaaagc agagagcaac taatattagt tttaaatgat attaagaaaa
     8701 atccaaagat taatgatttt aacaaactta ctcaaagaaa attaaatcgt tttaaacaag
     8761 aaatttttga attagaaaaa attgctagtg aaaaatacaa agatttaaat tccaaaaaag
     8821 ctaaaaagct cggtgtaaga ctttgggaaa aagcaaaaaa attcgttaaa aaataatatc
     8881 ccatttttgg gatattaaat atctatttct atacctacag gtgcgtgatc agagccaaaa
     8941 atatcatctc ttatgaaagc gtttttaagt ttatctttta aaccctttga aatgaaaaaa
     9001 taatcaatcc tccagcctac atttctttct cttgctttca ttctatagct ccaccacgag
     9061 tatttttctt tgatttcgcc attaatttct ctaaaagtat ctataaaacc aagctttagc
     9121 aaatcatcaa tccaagctct ttctataggt aaaaaacctg aagtgttggc attggctttt
     9181 ggatgagtaa gatcgatttc tttatgagcg gtattgacat caccgcaaat gataatttca
     9241 aatccatcct ttaaaagctt atccaaatac actaaaaaat ctgcataaaa ttgcatctta
     9301 aaatttaaac gctcttcatc tttttgacca tttggaaaat agatattaaa aagtgcaata
     9361 tttttaaagc ggtgttctaa aaccctacct tcttcatcat caaaaaattc gcattttttt
     9421 acttcgctat taaaattaca aagactcatt accccagaat accccgctct tttagcagaa
     9481 ttaaaataca tgtgtttaaa aggatattca taaatttttt taggaaattt atcttcatgt
     9541 gctttgattt cttgaaaacc tataaaatca atttgttctt gtgctatcca atcaagtgca
     9601 tttttatcac aaatagctct taagccattg acattccatg aaagtagttt cattattttc
     9661 cttaaaattt tcattaaaag tgtaaatcat aacataaaaa gatttaaaac tacaatccat
     9721 ttaaaaaaat tcaataaaat taaaagctta aatttgaagg tgggatttat atgcttagat
     9781 taacttggtt tcagtttact ttttttaatt ctttgatgat tgtattgttg aattttaatt
     9841 tattttattt tgtgtatgaa aaaaatacac aaaactggct tataactttt gtttttattg
     9901 tggcctatt
//
LOCUS       DAPIWQ010000055         9850 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.055, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000055 DAPIWQ010000000
VERSION     DAPIWQ010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9850
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.055"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            20..416
                     /locus_tag="RJ267_000957"
                     /pseudo
     CDS             20..416
                     /locus_tag="RJ267_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343486.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
     gene            complement(428..2104)
                     /gene="ilvD"
                     /locus_tag="RJ267_000958"
     CDS             complement(428..2104)
                     /gene="ilvD"
                     /locus_tag="RJ267_000958"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HDV7388824.1"
                     /translation="MRSDAIKKGHLKAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNDYAKIIKDEICKNGCVPFEFNTIGVDDGIAMGHEGMLYSLPSREIIANSIE
                     TVMNAHQLDALICIPNCDKITPGMLMGALRVNVPTIFVSGGPMASGVTKKGEKISLSS
                     VFEAVGAYEAKKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIRNIITQKAVRNAMVVDMAMGGSSNTVLHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNSVYMDDIHKAGGVSAVMAEISSRQ
                     GHILELDALTITGESLEERLKNAKIKDENIIRKVDNAYSKVGGLAILFGNLAEQGCVI
                     KTAGIIGERKFKGKAVCFNSQDEAIKGIIKGKVKKGNVCVIRYEGPKGGPGMQEMLSP
                     TSLLMGMGLGADVALITDGRFSGATRGLSVGHISPEAAEGGLIGLLKDGDEIEIDVDA
                     YTIHANLSEEEITQRKKEFVLPQKEVPSRWLRMYQKLVSNASKGAVLDME"
     gene            2264..2911
                     /locus_tag="RJ267_000959"
     CDS             2264..2911
                     /locus_tag="RJ267_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="desulfoferrodoxin FeS4 iron-binding
                     domain-containing protein"
                     /protein_id="HDV7388825.1"
                     /translation="MRQYETYKCQKCGNEVEVQNVGGGKLSCCGEEMKCITTDLTAVN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVTAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            2976..3215
                     /locus_tag="RJ267_000960"
     CDS             2976..3215
                     /locus_tag="RJ267_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HDV7388826.1"
                     /translation="MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAIL
                     EYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITVE"
     gene            3249..3824
                     /locus_tag="RJ267_000961"
     CDS             3249..3824
                     /locus_tag="RJ267_000961"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HDV7388827.1"
                     /translation="MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKKL
                     DGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKTGLKLIKKHFK
                     AENNFLYDGNTNLGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEF
                     EKNKAYGTKAHKEVIAKFGICKLHRKSFKLL"
     gene            complement(3825..5270)
                     /locus_tag="RJ267_000962"
     CDS             complement(3825..5270)
                     /locus_tag="RJ267_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HDV7388828.1"
                     /translation="MGNARGFLDFKRMDFKKIAPKERVLNYKEFTIPLDKKEQEIQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLIYRSLWEEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGTSVSIKNNELSIIENAFKENLVRVNKPKQYNGKKIAIIGS
                     GPAGLACANTLNSLGYKVSVFERSDKIGGLLMYGIPDMKLDKSIVDRRVDLLKKSGIE
                     FKVNENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADAAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKTHVEGVEANDLKREFKEGKA
                     INVEIPNSKKTYKVDLVLLAMGFSGCEEAIAKNFGVKLDEKNNISTENFQTTHKKIFA
                     CGDARKGQSLVVWAIKDGIECALSLHQNLAK"
     gene            complement(5280..9770)
                     /gene="gltB"
                     /locus_tag="RJ267_000963"
     CDS             complement(5280..9770)
                     /gene="gltB"
                     /locus_tag="RJ267_000963"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HDV7388829.1"
                     /translation="MDLENILENNQSIGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGAGAEENSGDGAGILIQIPHDFFKTQELGFELPKKGDYAVAQMFLS
                     PNTDAKEEAKEIFLQGLKDKKLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPSK
                     ISAGLEFERVLYSTRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEY
                     FENLDEIFPIIAKPSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDEKNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKKWLKNLVELEKQK
                     SGVYKHQFLKEDEVLKLQKAFGWSYDELKMSVAAMAQNGKEAIAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKIALPV
                     ISNEELFEVKALNKFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIANKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIHGFRSA
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKEGVDK
                     NSAIKQVASGRFGVDLNYLSHAKEIQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKHANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVLGCTMMRVCHLNTCPFGIATQDTELRDRFKGKVDDV
                     INFMYFIAEELREYMARLGFERLDDMIGRVDKLRQKSVQGKAGKLNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALDEDSIHIKAIGNAGNSFGAFLLKGIKLEIIGDSNDYLGKGLSGGKIIAK
                     ISNEATFSPEENIIAGNACLYGATKGEVYLDGIAGERFCVRNSGALAVVLGTGVHGCE
                     YMTGGQVVVLGDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLNAKDEKELKAV
                     IEKHITYTDSKKAKDILEKFDKKDFFKVTPRDYEKMLKMLDLCKNEKDPNLAAFLKIT
                     QK"
BASE COUNT         3113 a         1945 c         1455 g         3337 t
ORIGIN      
        1 aaaacataaa ggagttatta tgaaaaaata ctttcaaaag cactatactt tagccttttt
       61 tataggtata ttagcgggta ttttcggagc tattgttaaa tggggttggg aagtaccttt
      121 tcctccaaga aatcccaatg ttttttggcc agcagatgct ttagaacgtg ttactccacc
      181 taaaattttt ctagaacaac taggcttacc tactgaaagg tgcagttttt ggattttttg
      241 tttatctttt tgcccatgtt attgtaatgc ctttaattgc agaagttcca ccactttgtg
      301 aaattccttt tgatgaacac ctgtctgaaa tttttggaca tattgtttgg ctgtggggca
      361 tggaaatagt tcgtagagat ataagaaatc gtataaccaa agaaatagaa gaatgaaagg
      421 tttcctttca ttccatatcc aaaaccgcac ctttactagc attgctaaca agtttttgat
      481 acattctaag ccatcttgaa ggcacttctt tttgaggcaa tacaaattct tttttgcgtt
      541 gagtgatttc ttcttcgctt aaatttgcat ggatggtata agcatctaca tcaatttcta
      601 tttcatctcc atcttttaaa agtcctataa gaccaccttc agctgcttca ggggaaatat
      661 gacctacgct taaacccctt gtagccccgc taaaacgacc atcggtgatt aaagctacat
      721 cagcacccaa acccataccc attaaaagtg aagtaggact taacatttct tgcataccag
      781 ggccaccttt tggaccttca tagcgtatca cacaaacatt tccttttttc accttgcctt
      841 tgataatgcc ttttatagct tcatcttgag agttaaaaca aacagctttg cctttaaatt
      901 ttctttctcc gattattcct gcggttttta taacacaacc ttgctcagct aaatttccaa
      961 acaaaatagc aagtccacct acttttgagt aagcattgtc tactttgcga atgatatttt
     1021 catctttgat tttagcattt tttaagcgtt cttcgagact ttctcctgtg atagtcagtg
     1081 catcaagttc taaaatatgt ccttgtctgc ttgaaatttc agccataact gcactcacac
     1141 cacctgcttt gtggatatca tccatataaa cactatttag cgacggggct atttttgcta
     1201 tgtgtgcaac tttacttgag atgaaattta aatctttaat atctagtgcc acccctgctt
     1261 cacgcgaaat ggcaagcatg tgtaaaacag tattgctact tccacccatt gccatatcta
     1321 ctaccatagc attacgcacg gctttttgag tgatgatatt gcgaatttta aaacgctcat
     1381 ctaaggcgat ttcacaaata cgacgcgctg cttttcttaa aagctcttct ctttctttgc
     1441 ttaaagctaa gatggttcca ttaccttcta gtgctatacc catagcttcg cataaggtat
     1501 tcatagaatt tgctgtaaac attcccgagc aagatccacc acttggacag gctgaacatt
     1561 ctatatcttt aaattcttct tcgctaattt ttttggcttc ataagcccct acagcttcaa
     1621 aaacagagct aagactaatc ttttctcctt ttttagttac ccctgaagcc ataggcccac
     1681 cacttacaaa aatggttgga acatttactc ttaaagctcc cattaacata ccaggagtga
     1741 ttttatcgca gtttgggatg cagattaaag catcaagttg atgagcattc atcactgttt
     1801 caatggaatt tgcgatgatt tcacgacttg gtaaagaata aagcatacct tcatgtccca
     1861 tagctatacc atcatctaca cctatggtat taaactcaaa aggcacacaa ccatttttgc
     1921 atatctcatc tttaatgatt ttagcataat catttaaaaa ataatgtcct gggattatat
     1981 ctatatagct atttgctaca cctataaaag gtttgtcaaa atcttcatct ttcaaaccac
     2041 aagcacgaag taaagaacga ttaggtgctt ttaaatgtcc tttttttatc gcatcgcttc
     2101 tcattgtaac tcctgataat aattttttaa aattatattt agcaaagctt aatttttatg
     2161 aaatttattt tgatatacat tttcataaat gataaaaatt attaattgac aaaaatattt
     2221 ttttataata caatgctttt tgataatcaa aaaaggagtc aaaatgagac aatatgaaac
     2281 ctataaatgc caaaaatgtg gtaatgaagt agaagttcaa aatgtaggtg gaggtaagct
     2341 tagttgttgt ggtgaagaaa tgaaatgtat cactacagat ttaactgcag taaatttgat
     2401 gaaagctttt gcgggcgaat ctatggcgag aaacaaatac gatttatttg ctgatgtagc
     2461 tgaagaagaa ggttggcatg cggttgctag acattttaga gaagcggctg aaaatgaaaa
     2521 atggcatgca agagcagaat ttaaagctta tcatgaaatc gttgatggca aacctttaga
     2581 agtaactaca aaaaacctag taactgctgc agaaggtgaa aactatgagc acacaactat
     2641 gtatccaaat tttgcaaaaa tcgctgaaga tgaaggtaaa aaggctatag cgagattatt
     2701 tacagctatt ggtaaagtag aaatcgaaca cgaaagagaa tatctagcgc ttaaaaaaat
     2761 gctcgaagaa gaagaatttt ttaatagtga agtagaagaa ttatgggttt gtgaagtatg
     2821 cggacatata catcgtggca aaaaagctcc agcagcctgt cctttatgta aagcaccaaa
     2881 agagtatttt aaacgcgaat ttttgggtta agttaagaaa ttcttatcct ttttaagata
     2941 atattataat tattttttaa taaaaggata agaaaatgaa aaaattacta tttttatttt
     3001 ttgctttaac ggcttttctc tttggtgctg taaatatcaa cactgcaaca ctaaaagaat
     3061 taaaaagttt aaatggtatt ggcgaagcta aggctaaagc gattttagaa taccgcaaag
     3121 aagcaaattt tacaagtatt gatgatctta aaaaagttaa aggcataggt gataagcttt
     3181 ttgaaaaaat caaaaatgat atcacagtag aataaaaggg catttttgcc cttcttttta
     3241 gaaaaatttt gaaaacttta tttgacacaa aagaactttt aaatgaattt gatataaatt
     3301 taatcggtat tgatgaagca ggacgcggtg ctttagcagg ccctatgatg atggcggctt
     3361 gcaaactgaa caaaaaactt gatgggttgt gtgattctaa aaaactaagc gaaaaaaaac
     3421 gcgaagaact ttatgaaatc atcatcaaaa attcaaacta tctcatactt gctttttctt
     3481 cagaacaaat cgacgcacta ggcttaagca cttgtttaaa aacgggctta aagcttataa
     3541 aaaagcattt taaagcagaa aataacttct tatatgatgg aaacaccaac ctaggtataa
     3601 acgggataaa aacacaaatc aaagccgata ctagcatttt gcaagtaagt gcagctagca
     3661 tacttgcaaa agttagtaaa gatagggtga tgaatttctt agctaaagac tttccttgtt
     3721 atgaatttga aaaaaacaaa gcctatggca caaaagccca caaagaagtt atagctaaat
     3781 ttggaatttg caaactccac cgaaaaagtt ttaaactttt atgattattt tgctaaattt
     3841 tgatgcaaac tcaaagcaca ttctatacca tcttttatag cccaaacaac taaagattgt
     3901 ccttttctag catctccgca agcaaagatt tttttatgag tggtttggaa attttctgtg
     3961 cttatgttgt ttttctcatc taatttcact ccaaaatttt tagcgatagc ttcttcgcac
     4021 ccgctaaaac ccatagccaa aagtactaaa tctactttat aagttttttt agaatttgga
     4081 atttcaacat ttatagcctt gccttcttta aactcgcgtt ttaaatcatt tgcttcaacg
     4141 ccttctacat gagtttttcc taaaaatttc tttgtcattt tttgatattc tctaggatct
     4201 ttgccatata cagcaatggc ttcttctaaa ccataatcag tagtaaaaat gtcagctttt
     4261 aaaggccaag gattgttttg gcttctttgc aaaggtcttt ttggacttct ttcaaaacgc
     4321 actatagatt tagccccttg tcttgtcgcc acagcgatac aatccacact tgtatcccca
     4381 cttcctataa ccaagacatt tttacctttg gctgcatctg cacccttgcc tgtttttaac
     4441 aaagttttgg tattttgcgt taaaaaatca agggcaaatt caaccccttt tagctttcta
     4501 ccttctatat caagatctat aggcttgctt gctcctgtgc aaagcaccaa agcatcaaat
     4561 tcttttagaa gttttgaaac cttatctttg ctgtctatat tttcattcac tttaaattca
     4621 atcccgcttt ttttaagcaa atccacccgt ctatcaacta tacttttatc aagcttcata
     4681 tcagggatac catacatcaa aagtccgcct attttatcgc ttctttcaaa aacacttact
     4741 ttataaccta gcgaatttaa agtgttagca caagcaagcc cagcaggccc acttcctatg
     4801 atagcgattt ttttgccatt gtattgctta ggtttattta ctcttactaa attttcttta
     4861 aaagcatttt ctatgatgga taattcatta tttttgatac tcacacttgt gccatttatc
     4921 gcacacacac aagaatcctc acaaggagca gggcaaacac gaccggtaaa ttcaggaaaa
     4981 ggattggtaa gatcaagtct ttcataagct tcttcccata aagaacgata aataagatcg
     5041 ttccattcag gaatgagatt gtttaaagga cagcctacat cttttccttc gctcatcaca
     5101 cccgtatgac aaaaggccac accacaatcc atacatcgtc cgccctgaat ttcttgttct
     5161 tttttatcca aaggtatagt aaattctttg taatttaaaa ccctttcctt aggagcaatt
     5221 tttttaaaat ccattctttt aaaatctaaa aaacctcttg catttcccat ttttactcct
     5281 tatttttgtg tgattttcaa aaatgctgct aaatttggat ctttttcatt tttacaaaga
     5341 tcaagcattt ttaacatctt ttcataatct cttggcgtga ctttaaaaaa gtctttttta
     5401 tcgaattttt ctaaaatatc tttagccttt ttagaatctg tataagtgat atgtttttct
     5461 atcacagctt ttaattcttt ttcatcctta gcattaagat ctttaatatc cacaagctcg
     5521 gtatttacat gagcttcatt gtgtcttcca aagatataaa caacgccccc actcatacca
     5581 gcagcgaaat tcgcacccac atctccaaga actacaactt gtccacctgt catatattca
     5641 caaccatgca cgcctgttcc taaaaccaca gccaaagccc ctgaatttct tacacaaaat
     5701 ctttcccctg ctataccatc taaatacact tcaccttttg tagctccgta taaacaagca
     5761 tttcctgcga tgatattttc ttcaggtgaa aaagtggctt catttgaaat ttttgctatg
     5821 attttaccac cacttaaacc cttgcctaaa taatcattgc tatcgcctat aatctcaagt
     5881 ttaataccct ttaacaaaaa cgctccaaag ctattgcctg cattgcctat agctttgata
     5941 tggatactat cttcatctaa agcatctttt ccataagttt ttaaaatttc acttgaaagc
     6001 atagttgcaa aagtacgact ttgatttcct acttctaaag aaagtttgat aggctctttt
     6061 ttctccacag catttttaca aagtggtagt aaaattctat aatcaatcgt tttttcaagt
     6121 ttattgtctt tataatcttt aaaatgcaca gcggttctat tataagtagg caaggatttt
     6181 aaaattttat ctaaatttag ctttcctgct ttaccttgca cacttttttg gcggagttta
     6241 tccacgcgac ctatcatatc atctaggcgt tcaaaaccaa gccttgccat gtattctcta
     6301 agctcctcag ctataaaata catgaaatta atcacatcat ctactttgcc tttgaaacga
     6361 tctctaagtt ctgtatcttg agtggctata ccaaaaggac aggtatttag atgacaaact
     6421 ctcatcattg tacaacctaa aacaatcaaa ggcgcggttg caaaaccaaa ttcttcagct
     6481 cctaaaagtg ctgctatggc taaatcacgc ccattcataa gctttccatc agtttctaat
     6541 cttaccctat ctctaagctt atttaagatc aaagtttgat gcgtttcagc taagcctaac
     6601 tcccaaggaa ttccagcatg cggtatagaa gttctaggac ttgcacccgt acctccatca
     6661 taacctgaaa caaggattaa attcgcacct gccttagcca cacctgcagc aaccgttcct
     6721 atgccatttt cgcttacaag ttttactgaa attttagcgt ctttgttcgc atgttttaaa
     6781 tcataaatga gttgagccaa atcctcaata gaataaatat catgatgagg aggtggagaa
     6841 atcagcgtca cacctgcagt agaatgtcta gccttagcta tccaaggata gactttaaag
     6901 cccattaatt gtccgccctc acctggtttt gcaccttgag cgactttgat ttgaatttct
     6961 tttgcatgac ttaagtagtt taaatccacg ccaaaacgcc cacttgctac ttgcttaatg
     7021 gctgagtttt tatccacacc ctctttgatt tcatagcgtt cttcatcctc accaccttca
     7081 cctgaatttg atttagcacc tattttattc atagcctgtg ctaaacactc gtgtgcttct
     7141 ttagaaatag aaccataact catcgcccct gttctaaagc gtttaactat actttctaca
     7201 ctttcaacct tatctatact gatagcttca ctaaaatcaa attccatcaa agaacgcaaa
     7261 ttaacttgtt tttcatctac taaagccgag tattttttaa agcttttata gtctttgttg
     7321 cgacaggctt gctgaagatt aaaaatcaca agcggatcga ttaaatgttc ttctttagca
     7381 cttctaaaac catgaattcc tttagaatct aaagccttat gtgtatcgtt aaaagcatgt
     7441 ttgtgtaaag caatgagttc tttttcaaaa tcttctaaat ccataccttc aatgcgtgaa
     7501 gttgtagaag tgaagtattt atcaatcacc ttagagctta agcccagaca ttcaaaaagt
     7561 gcagagccat tataactttg caaggtagaa acccccattt tagaagcaat tttgactata
     7621 ccacttgaac ttgccttgat gaaattttct accgcctttt cataacttaa atttaaatct
     7681 ttattggcaa tgagtttttg tatgctctca taaaccaaat aaggattaat aacagtcgca
     7741 ccataaccta aaagacatgc aaaatgatga atttctctag gttcaccact ttcgataata
     7801 agacttgtgt gtgttcttaa attttttctt actagatgat tatgcactcc agaaacagca
     7861 agcaaagcgg ggatataagc gtttttttca tccactcctt tatcgcttaa aatgataata
     7921 gaaacacctt ttttaacctc atcttctatc ttaacgcaaa gttcatctaa agccttttct
     7981 aaagtttttt tagaataatc ataaagtata gaaaattctt taacttgaaa tttatttaaa
     8041 gccttaactt caaaaagttc ttcattgctt atcacaggca aggctatttt tacgcgtttt
     8101 gcattgtttt catcgggttt taataaattg ccttcgcttc ctagataaat ccttgtagaa
     8161 gtaacgatct cttctcttat ggcatcaaga ggaggattag ttacttgtgc aaaaagttgt
     8221 ttaaaataat tatacaaagg ttgataagtt ttagaaagta tagccaaagg agtatctaca
     8281 cccatagctg ctatagcttc tttaccattt tgagccatag cagccacact cattttaagc
     8341 tcatcataac tccaaccaaa agctttttgg agttttaaaa cctcatcttc ttttaaaaac
     8401 tgatgtttat aaactccgct tttttgtttt tcaagttcaa ctaaattttt aagccatttt
     8461 ttataaggct tagcattagc ataatgctct ttgatttcat tatcagctat aaccctacct
     8521 cttgctgtat caacgagtaa aagttttcca ggttctaagc gttttttggc tttgatattt
     8581 ttttcatcaa gttttaaagc ccctgtttca cttgaaagta tgagcatatc atcttttgta
     8641 agataatacc ttgaaggacg aaaaccattt ctatccaaac tcgcccccat aatcactcca
     8701 tcagtaaaaa ctatagcagc aggcccatcc caaggctcca tcaataaaga atgatattca
     8761 taaaaagcac gctttttgct ttccatattt tcatttttat gccaaggttc tggcaccatc
     8821 atcataaaag cttcttctaa agtacgacca tttagagcta aaaattctaa agtattatca
     8881 aacattgcag aatcactgct aggcttagct atgatgggaa aaatttcatc taaattttca
     8941 aaatactcac tttgcatcaa accttctcta gctcttatac tatcaacatt tccgcgtatg
     9001 gtattaatct ctccattatg taccatatag cggtttgggt gggctctttc ccaacttgga
     9061 aaggtattag tcgaaaagcg agaatgcact aaagcaatgg ctgatttcat attaacatct
     9121 ttaaaatcga gataaaaatc gctcaattga gttgaaagaa gcattccttt ataaactata
     9181 gtacgtgaag aaaaacttga aaaataaaat tttggcacat taatagctct tttttctatg
     9241 agacgacgtg tgctataaag cactctttca aactcaagcc ctgcacttat tttacttggt
     9301 tttttcacaa aggcttgtaa aaaataaggc atagctttta aagcacttgc acctatatcg
     9361 ctaggattaa aaggcacttc tctaaaacct aaaaattcaa gttttttatc ctttaaacct
     9421 tgtaaaaata tctcttttgc ttcttctttt gcatcagtat tgggtgataa aaacatctgt
     9481 gctacggcat aatcaccctt tttaggaagt tcaaaaccca attcttgagt tttaaaaaaa
     9541 tcatgtggaa tttggattaa aatccccgcc ccatcacctg aattttcttc agctcctgca
     9601 ccacctcggt gttcaagatt catcaaaatt tctaaagcat cacaaataac cttataagaa
     9661 gcaataccgc gtatattagc aactgcagcg ataccacagg catcgtgttc gttctttggg
     9721 tgatataaac ctatgctttg attattttct aggatatttt ctaaatccat tttgctctcc
     9781 ttataagact gatttaaatt ttgttagctt tataaggatt atagcataca tttttttaaa
     9841 atcgatataa
//
LOCUS       DAPIWQ010000056         9721 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.056, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000056 DAPIWQ010000000
VERSION     DAPIWQ010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9721)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9721)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9721
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.056"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..740)
                     /gene="uppP"
                     /locus_tag="RJ267_000964"
     CDS             complement(<1..740)
                     /gene="uppP"
                     /locus_tag="RJ267_000964"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphatase UppP"
                     /protein_id="HDV7388830.1"
                     /translation="MENLYALILGIIEGLTEFLPISSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAVGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVFILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLEFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLGNANSLIPLGIGFITAFI
                     VAVLVIKFFLKFISKFDFIPFGIYRIILG"
     gene            complement(814..2811)
                     /locus_tag="RJ267_000965"
     CDS             complement(814..2811)
                     /locus_tag="RJ267_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HDV7388831.1"
                     /translation="MMYKKQNLPELTLRGLILGSILTIIFTASNVYLGLKVGLTFSSS
                     IPAVVISMAVLSLFKTSNILENNMVQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQ
                     TFMICLCGGGLGVLFTIPLRRTMVVESKLAYPEGRAAAEILKVANKDQSSKKGKQGIK
                     EIALGSFIAAIFSLLSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAG
                     AIALFVGMFLAWGIFTPYLSNFEFDSTKNAVDLASSVWSSKVRLIGTGAIAIAALWTL
                     IELLKPVIEGIKEIVKNVKITNQEKNERTNIDLSLKSIFILFVLMVVGLFITFYSFVE
                     DANLSIYYQMLFSFVGTLVSVLIGFFVAAACGYMAGLVGSSSSPISGIGLIGVIISSI
                     VFLVLGVELFQDPMLSKFAVALAIFTTSVILATAAISNDNLQDLKTGHLVGATPWKQQ
                     VALLVGCVFGALAIVPVLNLLYQAYGFVGAMPREGMDASSALAAPQANLMSTIAQGIF
                     HHNIEWGYMAFGVFVGILMIIIDKILKGTQKMSLPPLAVGIGIYLPPAVNIPLVIGGI
                     LKYIVMQHLTKKYAKNSHKEEKLASCEQRGTLFASGLIVGESIFGVIIAGITVFSVSM
                     GGSENPLALNLANFHDSELFALIFFVGVVLYFIKRIVKKDA"
     gene            complement(2994..4148)
                     /locus_tag="RJ267_000966"
     CDS             complement(2994..4148)
                     /locus_tag="RJ267_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate transporter"
                     /protein_id="HDV7388832.1"
                     /translation="MKTLVAFIKDGVKSVTDTAALFVFSILFFSVLNASGFFTKILNA
                     FLSKMKANVYQVCILTVFITAAVHLDGSGASTFLIVIPALLPIYERLGIRKTSMLLII
                     TSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWIAKIEIK
                     RGAGAGNLSGINLNIEKSEHHNEKWFWLNLLVAIGVIGLLISGIFPSYICFMIGLAII
                     LPLNYPNLKTAKKVLDRASAGAMLMYITLIGAGILIGVFDKSGIMEKMGVLILNFVPD
                     YLGAYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFGAEPLTIAIIMVIARNC
                     ATFISPVVPATLLGCGLAEVNIKDHIKRSFFYIWGISIICLIFAEVAGII"
     gene            4111..4335
                     /locus_tag="RJ267_000967"
     CDS             4111..4335
                     /locus_tag="RJ267_000967"
                     /inference="COORDINATES: protein motif:HMM:NF015397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HDV7388833.1"
                     /translation="MTPSLIKATNVLISKTPPLTPEQAHKNAVELAEHTKAWKGHEVL
                     IATHIDKGHIHTHFIVNSVNYENGHKLQWM"
     gene            4387..4761
                     /locus_tag="RJ267_000968"
     CDS             4387..4761
                     /locus_tag="RJ267_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001129922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TnpV protein"
                     /protein_id="HDV7388834.1"
                     /translation="MAKSLFEELGGKYERQGDYLIPCLTVPAEEEQAIGIWGQRHLDY
                     LKQYRKVTYTNLLTSGRLNAYLADINRQAQERFERLIEGMKQAQGITEQLKAENALEW
                     TGCLNNIRACAREIVEKEIIFA"
     gene            5128..7047
                     /gene="tet(O)"
                     /locus_tag="RJ267_000969"
     CDS             5128..7047
                     /gene="tet(O)"
                     /locus_tag="RJ267_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
                     /protein_id="HDV7388835.1"
                     /translation="MKIINLGILAHVDAGKTTLTESLLYTSGAIAELGSVDEGTTRTD
                     TMNLERQRGITIQTAVTSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAK
                     DGIQAQTRILFHALQIMKIPTIFFINKIDQEGIDLPMVYREMKAKLSSEIIVKQKVGQ
                     HPHINVTDNDDMEQWDAVIMGNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYH
                     GSAKNNLGTRQLIEVIASKFYSSTPEGQSELCGQVFKIEYSEKRRRFVYVRIYSGTLH
                     LRDVIRISEKEKIKITEMCVPTNGELYPSDTACSGDIVILPNDVLQLNSILGNEMLLP
                     QRKFIENPLPMLQTTIAVKKPEQREILLGALTEISDGDPLLKYYVDTTTHEIILSFLG
                     NVQMEVICAILEEKYHVEAEIKEPTVIYMERPLRKAEYTIHIEVPPNPFWASVGLSIE
                     PLPIGSGVQYESRVSLGYLNQSFQNAVMEGVLYGCEQGLYGWKVTDCKICFEYGLYYS
                     PVSTPADFRLLSPIVLEQALKKAGTELLEPYLHFEIYAPQEYLSRAYHDAPRYCADIV
                     STQIKNDEVILKGEIPARCIQEYRNDLTCFTNGQGVCLTELKGYQPAIGKFICQPRRP
                     NSRIDKVRHMFHKLA"
     gene            7099..7272
                     /locus_tag="RJ267_000970"
     CDS             7099..7272
                     /locus_tag="RJ267_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HDV7388836.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
     gene            complement(7647..8939)
                     /locus_tag="RJ267_000971"
     CDS             complement(7647..8939)
                     /locus_tag="RJ267_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001274343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDV7388837.1"
                     /translation="MSANNNELISISHKIELKPNNKAKTHFKKAFGCARLAYNWGLAK
                     WQEYYKQGIKKSHLELKKEFNVIKKEQFPFVYEVSKYATQQPFLNLNLAFQKFFRDLK
                     QGKVSYPKFKKKKDNFGSYYIGGDQAIIKDEKYLKVPNLGLVKMKEKLRFNGKINSFT
                     ISQSADKFFVSFSMQISKDEYLKTHNKAKNNNLALSIDVGLKSFLSLSNGLEIKAPKP
                     LAKFNRLMIKRARQLSKKQHAKTKQEALQGIKKSSNYLKASIKLNKLHRKIANIRSDF
                     LHKLTSSLVANAKYFCLEDLNVKGMMSNHRLAKSISDVSFYEFKRQLEYKSSYNDKEI
                     YQVDRFYPSSKLCSNCGTIKENLALKDRVYICDECGISIDRDYNASLNLLSQLKQKIG
                     KVLAEFTPADLTALLNDLAINQIATSKVETGIQQKSYL"
     gene            complement(8926..9564)
                     /locus_tag="RJ267_000972"
     CDS             complement(8926..9564)
                     /locus_tag="RJ267_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS607-like element ISChh1 family transposase"
                     /protein_id="HDV7388838.1"
                     /translation="MNKLLSIGQASKALGVTIQTLRNWDKKGLLKPDDMTKGGERRYK
                     LETLKAINKNLVFNKDSLKTIAYARVSSHDQKDDLIRQVQVLELYCSKQGFNYEVIQD
                     LGSGMNYYKKGLTKLLNQILDGKVKRLVLTHKDRLLRFGAELVFAICEAKEVEVIIIN
                     KGEESVKFEEELAKDVLEIITVFSARLYGSRSKKNKKLLDEMQEVVVENVSK"
BASE COUNT         3445 a         1750 c         1586 g         2940 t
ORIGIN      
        1 cctaaaataa tacgataaat tccaaaaggg ataaagtcga atttagaaat aaattttaag
       61 aaaaatttta taactaaaac tgcaacaata aaagcagtga taaaacctat gcctaaagga
      121 attaaagaat ttgcattgcc aagaagctca ggctctttat aaatgctata agctgtagcg
      181 ataatcatcg ttggaatggc aagcaaaaaa ctaaactcag ccgcaacttt tctattaaat
      241 tctagcaaaa gtccaccaat aatacttgct ccacttcttg aagtaccagg aatcatggct
      301 aaagattgaa aaatacctat gcaaaaagct tgtttaaaac ttatttcttc taaagaattg
      361 atacgatatt gtttattttt atgtgcaagt tctataagaa taaacacaac accgccaaaa
      421 atgagcattc caaccacaac ccaaccatta aataaagcat ttaagtattt tgccacaaaa
      481 agccctataa ctccggtagg aaaaaatcca actgcaagtt ttaaccaaat atcaagccct
      541 tgaaacaatt tacgccaaaa tacaaaaatg accgccaaaa tagaaccaag ctggatgata
      601 atcaaaaagc ttttccaaaa ctcatctata tcgataccta aaatagtcgt acctaaaatc
      661 atatgtcctg ttgaagaaat aggtaaaaac tcagtcagac cttctataat tccaagtatt
      721 aaagcatata aattttccat tttaatcctt gaatgataat tgcaaaagaa aaattatatc
      781 agaatggatt aaatggggtt ttaaccccaa aaattaagca tcttttttaa caatacgctt
      841 aatgaaatat aatacaactc ccacaaaaaa gataagtgcg aaaagctcgc tatcatgaaa
      901 atttgctaaa tttaaagcta aaggattttc actaccaccc atacttactg aaaatacagt
      961 aattcctgcg ataattaccc caaaaatact ttcacccact ataagccctg aagcaaaaag
     1021 cgtgcctctt tgctcacaac ttgcaagttt ttcttcttta tgagaatttt ttgcatattt
     1081 tttagtcaag tgttgcatta caatatattt taaaattccg cctataacta aaggtatatt
     1141 tacagcaggg ggaaggtaaa tacctattcc aacggctaaa ggcggcaaag acattttctg
     1201 tgttcctttt aaaattttat ctataataat cattaaaatt cctacaaata caccaaaagc
     1261 catataaccc cactctatat tgtgatgaaa aattccttgg gcgatagtgc tcattaaatt
     1321 tgcttgcggt gctgctaaag ctgatgaagc atccatacct tctcttggca ttgctccgac
     1381 aaaaccatag gcttgataaa gcaaatttaa aacaggaact atagccaaag caccaaaaac
     1441 acagcctaca agtaaagcaa cttgttgttt ccaaggagta gctccgacta aatgtcctgt
     1501 ctttaaatct tgtaaattat cattcgaaat agcagctgta gctaaaataa cactagtagt
     1561 aaaaatagct aatgctactg caaatttaga aagcatagga tcttgaaaaa gttccacacc
     1621 taaaaccaaa aaaacaatag aagaaataat aacaccaata agtccgattc cagaaatagg
     1681 actagaagaa gatcctacaa gtcctgccat atatccgcaa gctgctgcaa caaaaaaacc
     1741 tattaaaaca gaaactaaag ttccaacaaa tgaaaatagc atttgataat aaatacttaa
     1801 gttagcatct tcaacaaaac tataaaaagt aataaataaa cccacaacca ttaaaacaaa
     1861 aagtataaaa atacttttta aagaaaggtc tatatttgtt ctttcatttt tttcttgatt
     1921 agtaatttta acatttttaa caatttcttt aataccctca ataacgggtt ttaaaagttc
     1981 tattaaagtc caaagcgctg ctatagcaat agctcctgtt cctataagcc ttactttaga
     2041 actccataca ctagaagcta aatctacggc attttttgta ctatcgaatt caaaatttga
     2101 aagataggga gtaaaaatac cccaagctaa aaacatacct acaaaaagag ctatagcacc
     2161 tgctaaacca actaaataac ctgcccctaa aagtgccaaa gaatatccca tagaaaaacc
     2221 aaaagccatt ttattccaaa taaaagcaaa attactctca cttgcagcga gtttaaaacc
     2281 attgcttaac aaactaaaaa tagcagctat aaaagagcct aatgctattt ctttaatgcc
     2341 ttgttttcct tttttactac tctgatcttt attggctact tttaaaattt cagctgcggc
     2401 tctaccttca ggataagcaa gcttgctttc aaccaccata gtccttctta atggtatagt
     2461 aaaaagcact ccaagtccgc caccacaaag acatatcata aaagtttgcc aaagtggaaa
     2521 ttcactccaa tacccacaca taaaaagccc tgggataaca aaaataactg atgataaagt
     2581 tcctgctgct gaagcttgag tttgaaccat attattttct aaaatatttg aagtcttaaa
     2641 aagactcaaa accgccatgg agatgaccac agctggaatt gatgatgaaa aagtaagtcc
     2701 cacttttaac cccaaatata catttgaagc tgtaaaaata atagttaaaa tacttcccaa
     2761 aatcaaaccc cttaaggtaa gttctggtaa attttgtttt ttgtacatca tttctccgtt
     2821 ttaaaattta ctttcaactt aaaaaatatt cttataagtt taaatttata atttttctct
     2881 aaagcaaaat aaaataatac aaaaaaacgc ttatattttt ataaattttt gactcaaaaa
     2941 tatcataaaa caatgaacca atcattgaaa aatcaaaagt ttttttattt taattatatt
     3001 atcccagcta cctcagcaaa aatcaagcaa ataatactta taccccatat ataaaaaaag
     3061 cttcttttga tatgatcttt aatattaacc tctgctaaac cgcaacctag caaagttgca
     3121 ggcacaacag gagaaataaa tgtcgcacaa tttcttgcta tcaccatgat aatagctata
     3181 gtcaaaggtt cagcgccaaa agccttagtt acactcaaaa ctataggcat cactccataa
     3241 aaataagaat ctgtacaaaa aataattgcc attggaacag ccaatatccc taccatcaaa
     3301 ggaatataag cacctaaata atctggaaca aaatttaaaa tcaaaacacc cattttctcc
     3361 ataataccac ttttatcaaa tacacctatt aatatcccag caccaattaa agtaatatac
     3421 ataagcattg caccagcact tgcacgatct aaaacttttt tagctgtttt taaattagga
     3481 taattaagcg gtaaaattat tgcaagtcct atcataaagc aaatataact aggaaaaata
     3541 ccactaatta aaagcccaat aaccccaata gctacaagta aatttaacca aaaccatttt
     3601 tcattatggt gttcgctttt ttctatattt aaatttattc cagacaagtt acctgcgcct
     3661 gcacctcttt ttatttctat cttagcaatc caaattgcca aaagaaggga taataccaaa
     3721 cctacaatct gaataggtat aatatggtgc caaagcaaat ttgcatccat tcctatgtta
     3781 gtagccgctc ttaaagtagg accaccccaa ggaataacat tcataacccc catagccgaa
     3841 gtaataatca ataacattga agtctttctt atacctagac gctcataaat aggtaataat
     3901 gcaggtatta caataagaaa agtagaagca cctgaaccat ctaaatgtac agcagcagta
     3961 ataaaaacag taagaatgca aacttgatat acattagctt tcatttttga taaaaacgca
     4021 tttaaaattt tagtaaaaaa accacttgca tttaaaacac taaaaaagag tatagaaaaa
     4081 acaaacaaag ctgccgtatc cgttacgctt ttgactccat ctttaataaa agcaaccaat
     4141 gttttaatat caaaaacacc tcctttaacc ccggagcagg ctcacaagaa cgctgtcgag
     4201 ctggcagagc atacaaaggc atggaaaggg catgaagttc tgatagccac gcatatagac
     4261 aaggggcata tacacacgca ctttattgtc aattccgtaa attatgagaa cggtcataag
     4321 ctccaatgga tgtaggacgg attttgcgga cattcaaaat aaaaaagaat gtggaggtaa
     4381 cagacaatgg caaaatcatt atttgaggaa ctgggcggca aatacgaaag gcaaggggat
     4441 tatttgatac cgtgcttaac tgtacccgcc gaagaagaac aggcaatagg catctggggg
     4501 caacggcatt tagattatct aaaacagtac cgtaaagtta catacaccaa tcttcttaca
     4561 agcggcaggc taaacgccta ccttgccgac atcaacagac aggcacagga acgctttgaa
     4621 aggctcatag agggtatgaa acaggcacag ggcataacgg aacagctaaa ggcagaaaac
     4681 gccttagaat ggacaggatg cctcaataac ataagggctt gtgcgaggga gattgtggaa
     4741 aaggaaatta tttttgcata aacagatgat tagtggcagg gggaaatcct gccgcttttt
     4801 ctgctttagt ttgtcagctt gacaaataaa gggttaaaga atataattag attcagtatt
     4861 atacaaggag ttaataaata tgcggcaagg tattcttaaa taaactgtca atttgatagt
     4921 gggaacaaaa agtagcagtc ccgtttcact tttaatatgg ggcttagttt tttgtaccca
     4981 gtttaagaat acttttatca tgtgatttta tatgcccgaa aacatataag tgttttgggg
     5041 ctattggagt tatttaccca gtgataggag tatttatcac tgggtatttt tatgcccttt
     5101 tttgggtgtt gataggagga aaatcacatg aaaataatta acttaggcat tctggctcac
     5161 gttgacgcag gaaagacaac attaacggaa agtttattgt ataccagtgg tgcaattgca
     5221 gaactaggga gcgtagatga aggcacaaca aggacagata caatgaattt ggagcgtcaa
     5281 aggggaatca ctatccagac agcagtgaca tcttttcagt gggaggatgt aaaagtcaac
     5341 attatagata cgccaggcca tatggatttt ttggcggaag tataccgttc tttatccgta
     5401 ttagacggag cagtattatt agtttctgca aaggatggca tacaggcaca gacccgtata
     5461 ctgtttcatg cactacagat aatgaagatt ccgacaattt ttttcatcaa taaaattgac
     5521 caagagggga ttgatttgcc aatggtatat cgggaaatga aagcaaagct ttcttcggaa
     5581 attatagtga agcaaaaggt tgggcagcat ccccatataa atgtaacgga caatgacgat
     5641 atggaacagt gggatgcggt aattatggga aacgatgaac tattagagaa atatatgtca
     5701 gggaaaccgt ttaaaatgtc agaactggaa caggaagaaa acaggagatt ccaaaacgga
     5761 acgttatttc ccgtttatca cggaagcgct aaaaacaatc tggggactcg gcagcttata
     5821 gaagtaattg ccagtaaatt ttattcatca acgcctgaag gtcaatctga actatgcggg
     5881 caggttttta agattgaata ttcagagaaa aggcggcgtt ttgtttatgt gcgtatatat
     5941 agcggaacat tgcatttgag ggatgttatt agaatatctg aaaaagagaa aataaaaatc
     6001 acagagatgt gtgttccgac aaacggtgaa ttatatccat ccgatacagc ctgctctggt
     6061 gatattgtaa ttttaccaaa tgatgttttg cagctaaaca gtattttggg gaacgaaatg
     6121 ctgttgccgc agagaaaatt tattgaaaat cctctcccta tgctccaaac aacgattgca
     6181 gtaaagaaac ctgaacagcg ggaaatattg cttggggcac ttacagaaat ttcagatggc
     6241 gaccctcttt taaaatatta tgtggatact acaacgcatg agattatact ttcttttttg
     6301 gggaatgtgc agatggaagt catttgtgcc atccttgagg aaaaatatca tgtggaggca
     6361 gaaataaaag agcctactgt tatatatatg gaaagaccgc ttagaaaagc agaatatacc
     6421 atccacatag aagtcccgcc aaatcctttc tgggcttctg tcgggttgtc catagagccg
     6481 ctccctattg gaagcggagt gcagtatgaa agcagagttt cacttggata tttaaatcaa
     6541 tcgttccaaa atgcggttat ggagggggtt ctttatggct gcgagcaggg gctgtatgga
     6601 tggaaagtga cagactgtaa aatctgtttt gaatatggat tgtattatag tcctgtaagt
     6661 acccccgcag actttcggct gctttcccct atcgtattgg agcaggcttt aaaaaaagca
     6721 gggacagaac tattagagcc atatctccac tttgaaattt atgcaccgca ggaatatctc
     6781 tcacgggcgt atcatgatgc tccaaggtat tgtgcagata ttgtaagtac tcagataaag
     6841 aatgacgagg tcattctgaa aggagaaatc cctgctagat gtattcaaga atacaggaac
     6901 gatttaactt gtttcacaaa tgggcaggga gtctgcttga cagagttaaa aggataccag
     6961 ccagctattg gtaaatttat ttgccaaccc cgccgcccga atagccgtat agataaggtt
     7021 cggcatatgt tccacaagtt agcttaacag cttgcaaaag tcatataaaa tgagatttga
     7081 aaggattaga gactaattat gatgaaatgc gaatggatat tgtgtcctgt ttgtgggagc
     7141 aaaacccgta ataaaattag gaaggacact gttttggaga attatcccct ttattgtcca
     7201 aaatgcagac aagaaagatt gattaaagtt gacaacttga agataactgt catcaaagag
     7261 ccagacgctt aagacgcaga gccgatgaaa ttgtggaaca attcacgaat catcggctct
     7321 ttttgtttcg tatttgaaag aacaaactca ccaaataaaa aaaacgatat tcgggtgggt
     7381 tattttgtta taccctaaat taccctctga gtaagcacga ccttaaagac ttaaaggaac
     7441 ggtgcaacga gcagagctgg gaacagggct tgcatgtgcc ggagaaagga aagacatttg
     7501 ctggagaagt ccgggaagaa acggtggcat ggagcaaaga cacctaccag cttttgaaac
     7561 aggcagagca gggaaaggtc aaaagctatg tgcaggatat tgccgttcct acaaacctat
     7621 aaaatcctat aaaaagatat aaaactctat aaataggatt tttgttgtat tcctgtttca
     7681 accttgctag ttgctatttg atttattgct aaatcattta acagagctgt caagtccgca
     7741 ggcgtaaatt cggcaagaac tttgcctatt ttttgcttta attgtgaaag caaattaaga
     7801 ctagcattgt agtctctatc aatgctaatt ccacattcat cgcaaatata aactctatct
     7861 tttagagcta aattttcttt tatagttcca caattagagc ataatttaga actaggataa
     7921 aatctatcta cttgatagat ttctttatcg ttgtagctag atttatattc tagttgcctt
     7981 ttaaactcat aaaaacttac atcgcttata gatttagcaa gtctatgatt actcatcatc
     8041 ccttttacat ttaaatcctc taagcaaaaa tatttagcat ttgctaccaa gctagaagta
     8101 agcttgtgta aaaaatcact tcttatattt gctattttac gatgcaattt atttagctta
     8161 atacttgctt ttagataatt gctagatttt ttaatgcctt gtaatgcttc ttgcttggtt
     8221 tttgcgtgtt gctttttgct tagctgtcta gctcttttta tcattaaacg attaaactta
     8281 gctaatggtt taggtgcttt tatctctaag ccattagata aacttaaaaa cgattttaag
     8341 cctacatcta tgctaagtgc tagattatta tttttagctt tattatgagt ttttagatac
     8401 tcatctttac taatttgcat actaaaagaa acaaagaatt tatcagcact ttgagaaata
     8461 gtaaaagaat tgattttacc attaaatctc aatttctctt tcatttttac aagtcctaaa
     8521 tttggcactt ttagatattt ttcatctttg attattgctt ggtctccacc tatgtaataa
     8581 gagccgaaat tatctttctt tttcttaaat tttggatagc ttactttacc ttgttttaaa
     8641 tctctaaaaa atttttgaaa tgctagattt agatttaaaa aaggctgttg cgtagcatat
     8701 ttacttactt cataaacgaa aggaaattgt tcttttttta taacattaaa ctctttttta
     8761 agctctaaat gagatttttt aatgccttgc ttatagtatt cttgccattt agcaagtccc
     8821 caattataag caagtctagc acaaccaaag gcttttttaa aatgagtttt agctttatta
     8881 tttggcttta actctatctt atgagaaatg ctaataagct cattattatt tgctgacatt
     8941 ttctaccacc acttcttgca tttcatctaa aagtttttta tttttctttg agcgtgagcc
     9001 ataaagtcta gctgaaaata ctgtgattat ttccaacaca tctttggcta attcttcttc
     9061 aaattttacg ctttcttcgc ctttatttat tattattact tctacttctt tggcttcaca
     9121 tatagcaaat actagctcag caccaaagcg taaaagtctg tctttgtgag ttaaaactaa
     9181 tctttttact ttgccatcta gaatttgatt tagcaattta gttaagcctt ttttataata
     9241 attcatacca gagcctaaat cttgtataac ttcataatta aagccttgtt tagaacaata
     9301 tagttctaag acttgaactt gccttattaa atcatctttt tggtcgtggc tagaaacacg
     9361 agcataagca atagttttta agctatcttt attaaaaact aggtttttat ttatagcttt
     9421 taatgtttct agcttatacc tacgctctcc acccttagtc atatcatcag gttttaataa
     9481 gcctttttta tcccaatttc taagagtttg gatagtaaca ccaagagctt tactagcttg
     9541 accgattgat aataatttat tcataggact attttagcaa attttaaaaa ataagtcaag
     9601 taaaatctat aaaatattta tataatttta tagatttttt tataatttac ttagcagtta
     9661 taagccctta aagctgcacc cacgccaaaa ccaagctgtt caagaataag taaaatacaa
     9721 g
//
LOCUS       DAPIWQ010000057         9461 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.057, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000057 DAPIWQ010000000
VERSION     DAPIWQ010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9461)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9461)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9461
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.057"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            23..1159
                     /gene="pseA"
                     /locus_tag="RJ267_000973"
     CDS             23..1159
                     /gene="pseA"
                     /locus_tag="RJ267_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid biosynthesis protein PseA"
                     /protein_id="HDV7388839.1"
                     /translation="MKFCKKCVMPDTKPDLHFDEEGVCDACRSQEAKNQNINWQEREK
                     EFFELIKKYKKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGRKN
                     LDNLNHLGVDLIHIKRDPKVYQKLAREAFIRTGDNEWQNHLGIFTSVPRIAVNFGVPL
                     IIWGESPQIEYGGPASSKNKNILGREWLEEFGGLLGNRASDMLGVNGITEKDLFLYTY
                     PSDEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSN
                     HVHDYLKYCKYGFGRATDNACLDIRLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSG
                     FSEEEFQKIVDSFTNKKIFKRDENGKFIRDYDGSLVRKDECVLK"
     gene            1156..1761
                     /gene="hisH"
                     /locus_tag="RJ267_000974"
     CDS             1156..1761
                     /gene="hisH"
                     /locus_tag="RJ267_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HDV7388840.1"
                     /translation="MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLP
                     GVGFFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFI
                     EGEVVKFEEDLNLKIPHMGWNELEILKQVPLYQGIDNKSDFYFVHSFYVKCKDEFVSA
                     KAQYGHKFVASLQKDHIFATQFHPEKSQNLGLKLLENFARL"
     gene            1762..2508
                     /gene="hisF"
                     /locus_tag="RJ267_000975"
     CDS             1762..2508
                     /gene="hisF"
                     /locus_tag="RJ267_000975"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HDV7388841.1"
                     /translation="MLKTRIIPCVLLKNSQLVKSIEFKDFRTIGHLTSTMRIYNARNV
                     DELIILDIDASKSGEIDFESIEDLAKECFMPLTIGGGIKTLEDIQKILNLGADKISIN
                     SKALEDMDFISKAGNRFGSQCIVCSIDVKRKGDQFCVYDRGNLLEKSPLELALEYEKK
                     GAGELLLTSVDFEGKAKGYDLELLKIFQNKLKIPLIINGGLSKPSDGVEALNLGADAL
                     AGAYIFHFSKYTPKDVKEELARQGFAVRLL"
     gene            complement(2473..2946)
                     /gene="pseH"
                     /locus_tag="RJ267_000976"
     CDS             complement(2473..2946)
                     /gene="pseH"
                     /locus_tag="RJ267_000976"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HDV7388842.1"
                     /translation="MIKLKNFAELNSQEIKLIFKWRNHPDISQFMKTKHIDFEEHLRF
                     IRNLHQDSNKKYFLVFQDEQIIGVIDFVNITTKSCEFGLYAIPDLKGVGQVLMNEIKK
                     YAFEILKVDTLKAYVFKDNHKALKLYQQNHFTIYDEDKDFYYVCLKQSHCKALPS"
     gene            complement(2943..3767)
                     /gene="pseG"
                     /locus_tag="RJ267_000977"
     CDS             complement(2943..3767)
                     /gene="pseG"
                     /locus_tag="RJ267_000977"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HDV7388843.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYSDVSFACLPLEGSLID
                     EIPYPVYELSSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIREEFYQEAKENREKKYDF
                     FICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHEN
                     IAKLMNESNKLIISASSLVNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYKY"
     gene            complement(3751..4449)
                     /gene="pseF"
                     /locus_tag="RJ267_000978"
     CDS             complement(3751..4449)
                     /gene="pseF"
                     /locus_tag="RJ267_000978"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HDV7388844.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLISYSIENALNSGIFD
                     EVVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAVVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKDILKQAYEKFIQNQSKFLFAATEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTIQDLE
                     FAKILYKVNHESAF"
     gene            4528..5184
                     /locus_tag="RJ267_000979"
     CDS             4528..5184
                     /locus_tag="RJ267_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDV7388845.1"
                     /translation="MLINQTFEIDSCDDVELGIKRTSKLEYRISYDDEKDIKAIVFIV
                     GGFGANANISFLDFDREYIAKNFDVVVVHVFYHCFCARQSIDQKYNPKLIPNQDDLER
                     VNGILKNINLGHLSVNKDNFEQIIPLIEQKVNKMKQAGLVDESQKIELSCDFIPPNGD
                     YQNYGIMAAIDHINALKDLVKRFPKFADLPKIYGGGVLWRIPIFTHSKNSSLVCGWCD
                     "
     gene            5168..5743
                     /locus_tag="RJ267_000980"
     CDS             5168..5743
                     /locus_tag="RJ267_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002845538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDV7388846.1"
                     /translation="MDGVIDNSGVCLPFLACILGREMNQGEFYFEGSGYRLYCFVYKY
                     WNRNMNSSYYFGDENYLIRAVLNSNHLQIQSNLNKNTIFVSYHSIQDMGAPVQNKIEL
                     YKCYQELGYDATLHLIKDENDIDGRFVKSLEHGLRMTDRALFRKELPLMLEKLQGRKS
                     FMQENSISYPCGNKVFVFKDLEDKFELEMIN"
     gene            5765..6835
                     /locus_tag="RJ267_000981"
     CDS             5765..6835
                     /locus_tag="RJ267_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDV7388847.1"
                     /translation="MTAYLHIGTTNTGNQEKQGFLMQNEEKLLQKAYIYPKSLRVANR
                     HWALVDMVLELVQKEDILKKESVLSHITNERLLRAIENFKSESALHKDKKFIFSAEGI
                     VWDFSTKKHVEILEKIMRELGFTQIYIIVYFRDTLGYLNSHCSQDHKNNMGYYSADFA
                     PQDHPRKYIFDYEWICKTHAEVFGEENLIVRLLREDYVGGTLLKDFVYHLGLEWDESF
                     VLKQTKNESFNLLGMELMSRLNQKDLKQDNLNSLLFMARRKFEGSKEKRLKFAVQKDI
                     AKAYVDYFASSLEWVKNKYFPHKNSLFTPVNWEEYEQNYTLTHMLSKDWDDVADFIAQ
                     IIVSKNEIISSLKEQLELARKD"
     gene            complement(6832..7059)
                     /locus_tag="RJ267_000982"
     CDS             complement(6832..7059)
                     /locus_tag="RJ267_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDV7388848.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFENIKKMLETAMKD"
     gene            complement(7099..8607)
                     /locus_tag="RJ267_000983"
     CDS             complement(7099..8607)
                     /locus_tag="RJ267_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HDV7388849.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFVKERKEITYKDFDLFSKK
                     LASEILKTLGNDNPTQAPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLNFNLDLPTLYTQDFESFNIDESLIKHAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSSVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSTIFWVPSVLIYFANTEALNNFSLNALKKMLFC
                     GEIMPNKQLNIWRKHLPNALFANLYGPTEITDVCSFYIINRTFKDEELLPIGKACKNT
                     ELLVFDENMNFISPKQIGVKGELFVRGTSLSLGYYNDKEKTKQAFIQNPLHDNYLDLL
                     YKTGDIVSYNEFGELLCYGRADNQIKYMGHRIELGEIESVINSHVNIKNSACIFKEDI
                     ICFYESEEEINFKDFLKDKLPSYMIPKNFIKLDKFKLNQNGKIDRKVLKELV"
     gene            8668..>9461
                     /locus_tag="RJ267_000984"
     CDS             8668..>9461
                     /locus_tag="RJ267_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDV7388850.1"
                     /translation="MLINQSFEIDSCDDVELNIKRTSKLEYRISYDDEKEIKAIVFII
                     GGYGANANIYFLDSYRNYIAKNFDVVAVHVFYHCFCQRRSDVEKYSTLADFTKDDLKL
                     IEKVLRKYNIPCDQLANNTVVSHCEYLSEIMTELKMLNRLPYDFEERLSATFIPSRGE
                     YQNFGIMAAIDHINALKDLVKRFPKLADLPKIYGGGSYGGYLALLIAKIAPWYVDGVI
                     DNSGSAVPPLNYIIGRELEFKSKDTNGDMYMQGDHFFVSCFLKTHWT"
BASE COUNT         3277 a         1226 c         1620 g         3338 t
ORIGIN      
        1 taagactaat taaaggaaat ttatgaaatt ttgtaaaaaa tgtgtgatgc cagatactaa
       61 gcctgattta cattttgatg aagaaggtgt ttgtgatgct tgtcgttctc aagaagctaa
      121 aaatcaaaat attaattggc aagaaagaga aaaagaattt tttgagctta taaaaaaata
      181 caaaaaacat cctgtttatg attgtgttat cggagtaagt ggcggaaaag attctacttt
      241 tcaagtggtt aaaatgctcg aacttggact taatcctttg tgtgtgtgtt ttgagcctag
      301 cgtacctacg aaaatagggc gcaaaaattt agacaattta aatcatcttg gcgtggattt
      361 gatccatatc aagcgtgatc caaaagttta tcaaaaactt gcccgtgaag cttttataag
      421 aacaggggat aatgagtggc aaaaccattt gggaattttt acttctgttc cacgcatagc
      481 ggtaaatttt ggagtgcctt tgatcatctg gggagaaagt ccgcagatag agtatggcgg
      541 tcctgcgagt agtaaaaata aaaatatttt aggcagagag tggcttgaag aatttggcgg
      601 gcttttagga aatcgtgctt ctgatatgct tggggtaaat ggtatcactg aaaaagattt
      661 gtttttatat acttatccaa gtgatgaaga acttcaaaga gtaggggtta cggggctatt
      721 tttagggtat tattttaaat gggattataa aaaaattctt gaaatttcta aaaaatatgg
      781 ttttttaact ctagatcatc ctgttgagac tacttatgaa aattttgaaa atttagattg
      841 ttattctaat catgtgcatg attatttaaa atactgcaaa tacggctttg gtagagcaac
      901 agataatgct tgtttggata ttcgtttagg ttatatcagc cgtgaagaag gggtgcgttt
      961 ggtacaaaaa tacgatggca agccccctaa aaaggctatt aaaaaatacc ttgaattcag
     1021 tggttttagc gaggaagaat ttcaaaaaat agtagattct tttaccaata aaaaaatttt
     1081 taaacgtgat gaaaatggta aatttataag agattatgat ggttctttgg taagaaaaga
     1141 cgagtgtgtt ttaaaatgat agcgctcatt gattacaagg cgggaaattt aaactctgtt
     1201 gctaaggctt ttgaaaaaat aggagctata aattttatag ctaaaaatcc aaaagatttg
     1261 caaaaagcag ataaattgct tttacctgga gtgggatttt ttaaagaagc gatgaaaaat
     1321 ttaaaagaac ttggttttat agaagcttta aaagagcaag ttttagtaca aaaaaaacct
     1381 attttaggca tttgtttagg aatgcagctt tttttagaaa ggggctatga aggtggagtt
     1441 tgcgaaggac ttggttttat agaaggtgaa gtagtcaaat ttgaagagga tttaaattta
     1501 aaaatcccac atatgggttg gaatgagctt gaaattttaa aacaagttcc tttgtatcaa
     1561 ggcatagata ataagagtga tttttatttt gtgcattctt tttatgtgaa atgcaaagat
     1621 gagtttgtaa gtgctaaagc acaatacgga cataaatttg ttgcatcttt acaaaaagat
     1681 catatttttg ctacacaatt tcaccctgaa aaaagtcaaa atttaggttt aaaactttta
     1741 gaaaattttg caaggcttta aatgttaaaa actagaatta tcccttgtgt gttattaaaa
     1801 aattctcaac ttgttaaaag tatagaattt aaagattttc gcactatagg gcatttaact
     1861 tcaacaatga gaatttataa tgcacgcaat gttgatgagc ttattatctt agatatagat
     1921 gcttcaaaaa gtggagaaat agattttgaa agtatagaag atcttgctaa agaatgtttt
     1981 atgcctttaa ctataggtgg cgggataaaa acccttgaag atatacaaaa gattttaaat
     2041 ttaggtgcgg ataaaatttc tatcaattct aaggccttag aagatatgga ttttataagt
     2101 aaagcgggta atcgttttgg ttctcaatgt atagtttgtt ctatagatgt taaaagaaaa
     2161 ggagatcaat tttgtgttta tgatagggga aatttacttg aaaaaagtcc tttagaactt
     2221 gctttagaat atgaaaaaaa aggagctgga gagcttcttt taacttctgt ggattttgag
     2281 ggaaaagcaa agggttatga tttagaactt ttaaagattt ttcaaaataa acttaaaatt
     2341 cctcttatta tcaatggagg acttagcaag ccaagtgatg gagttgaggc tttaaattta
     2401 ggcgccgatg ctttagcggg tgcttatatt tttcattttt ctaaatatac ccctaaagat
     2461 gtaaaagaag aattagctag gcaaggcttt gcagtgagat tgctttaagc aaacatagta
     2521 gaaatcttta tcttcatcat aaatagtaaa atgattttgt tgatataatt ttaaggcttt
     2581 gtgattgtct ttaaaaacat aagctttaag agtatctact tttaaaattt caaaggcgta
     2641 ttttttgatt tcattcatta aaacttgtcc tacgcctttt aaatcaggta ttgcataaag
     2701 tccaaattcg caagatttag ttgtgatatt gacaaaatca attacaccga taatctgttc
     2761 atcttgaaaa actaaaaaat attttttatt agaatcttga tgtaagtttc ttataaatct
     2821 taaatgttct tcaaaatcaa tatgttttgt tttcataaat tgactgatat cggggtgatt
     2881 gcgccattta aaaatcagct ttatttcttg agaattaagt tctgcgaaat ttttaagttt
     2941 tatcaatact tatactccac ttcataccct tttttagcaa gccaagttgc tgtagattct
     3001 tgatttttaa cataacaaat agctttgaaa tttgccttta aaagcaaggc ttcattgact
     3061 aaagaacttg cactaatgat gagtttattg ctttcattca tcaattttgc aatattttca
     3121 tgatcgataa ataatctaat attgttatgt aattttgcaa atttttgcaa ttttttaaga
     3181 ttaggattag aagagctggt tgcaatgctg atgatttttg ttttaggtaa ttcgctagca
     3241 atttgtaaag aaaggttttt tatatcagtt ccacccatgc aaatgaaaaa atcatatttt
     3301 ttttctctat tttctttggc ctcttgataa aattcttccc tgattaaagc ataagaaaaa
     3361 ccacatctta cttcgcattt aaaaggcact aaaccttcat aatcacttgc ttttgcatag
     3421 gcattgacat tgagtaaaat atcacaatga tgaggcttta tttcatcatc aaagcttaga
     3481 attttcaccc ctgtttcaag cttgatcagt ttttcatcat ctacgctgat gccatagtga
     3541 tcaatgataa gaagttcaaa tttttcttct ttgatgagat tgataagctc gtagatactt
     3601 tcgctactaa gctcataaac aggataagga atttcatcga tcaaggagcc ttctaaaggc
     3661 aagcaagcaa aacttacatc gctatattgt ttagctaaga ctagatcgcg tttaatgtgt
     3721 ccaaagccta tttgactgga gctatcgctt ctaaaaagca ctttcatgat ttaccttata
     3781 aagtattttt gcaaattcca aatcttgtat ggtgtctata tcgcaaacta aatttcttgg
     3841 caatacaaac acgctagaat gaggtttaaa tataaaatct tcctcaagcc aagctttgct
     3901 tgtaccaaaa taaaaagctc ctgcatcatg ataagctttt gttagatctt gtgaacgact
     3961 tttataatgt ttttcatcaa acatataaac ttgattgttt tcatttagat aaaatgccct
     4021 ttgtatagga tactcaaact cagtagcagc aaataaaaac ttgctttgat tttgtataaa
     4081 tttttcatag gcttgtttta aaatgtcttt atttaacaaa ggagcagtag cataaaggca
     4141 gcagacatga tcataaattt gattttggct ttgtaaaatt tctatggcat tttgcactac
     4201 agcagtgctt gaagcataat catcgcttaa atttttatca cgcacaaaag gagcttttgc
     4261 accgtatttt aaggctactt ctatgatttc ttcatcatcg cttgaaagca ccacttcatc
     4321 aaaaatacct gaatttaaag cattttctat gctataagag attaaaggtt tacctagaaa
     4381 atcaatgata ttttttctag gaattctttt tgatccacca cgagcaggga ttatgcaaag
     4441 atttttcata gttaagcctt gtttttgtgt tttattttac taaaatttaa gtataattgt
     4501 ctttaaaata caataaaagg cttaaaattg cttataaacc aaacctttga aattgattct
     4561 tgtgatgatg tagaactagg tattaaaaga accagtaagc ttgaatatcg cataagttat
     4621 gatgatgaaa aagatatcaa agccatagtt tttatagtgg gtggttttgg agctaatgca
     4681 aatatttctt ttttagattt tgatagggaa tatattgcta aaaattttga tgttgtagtg
     4741 gtacatgttt tttatcattg tttttgtgca agacaaagta ttgatcaaaa gtataatcca
     4801 aagcttattc ccaatcaaga tgatttagag cgtgtaaatg gcattttaaa aaatattaat
     4861 ttaggacatt tatcggttaa taaagataat tttgaacaaa ttattcctct tatagagcaa
     4921 aaagttaata aaatgaaaca agcaggtttg gttgatgaaa gccaaaaaat agaactttct
     4981 tgtgatttta tcccacccaa tggagattat caaaactatg gcattatggc agctattgat
     5041 catatcaatg ctttaaaaga tttagttaaa cgctttccaa aatttgcaga tttaccaaaa
     5101 atttatgggg ggggggtctt atggaggata cctatcttta ctcatagcaa aaatagctcc
     5161 ttggtatgtg gatggtgtga ttgataattc aggtgtttgc ttgccatttt tggcgtgcat
     5221 tttaggaaga gaaatgaatc aaggggaatt ttatttcgaa ggaagtggtt atagacttta
     5281 ttgttttgta tataaatact ggaatagaaa tatgaattct tcttattatt ttggtgatga
     5341 aaattattta atcagagcag ttttaaattc aaaccatctt caaattcaat caaatttaaa
     5401 taaaaatacc atttttgtaa gctatcatag tatacaagat atgggtgcgc cagtgcaaaa
     5461 taaaatagaa ctttataagt gttatcagga attaggatat gatgcaactt tacatttaat
     5521 aaaggatgaa aatgatatag atggtagatt tgtaaaaagt ttagagcatg gacttagaat
     5581 gactgatagg gctttattta gaaaagaact tcctttaatg cttgaaaaac tacaaggaag
     5641 aaaatctttt atgcaagaaa attctatctc ttatccttgt gggaataaag tatttgtgtt
     5701 taaggattta gaagataaat ttgagttaga gatgataaat taaaataaag ataaaggata
     5761 taaaatgaca gcatatttac atataggaac tactaataca ggaaatcaag aaaaacaagg
     5821 cttcttgatg caaaacgaag aaaagctttt gcaaaaagct tatatttacc caaaaagtct
     5881 tagagtggca aataggcatt gggctttggt ggatatggtt ttagaattgg ttcaaaaaga
     5941 agatatttta aaaaaagaga gtgttttaag tcatatcaca aatgaaagac ttcttagagc
     6001 tatagaaaat tttaaaagtg aaagtgcttt acataaagat aaaaaattta ttttttcagc
     6061 tgagggtata gtttgggatt tttctaccaa aaaacatgta gaaattttag aaaagattat
     6121 gagagagtta ggttttactc aaatttatat tattgtgtat tttagagata ctttgggtta
     6181 tttaaactca cattgttctc aagaccataa aaacaatatg gggtattatt ctgctgattt
     6241 tgctccgcaa gatcatccta gaaaatatat ttttgactat gaatggattt gcaaaactca
     6301 tgctgaggta tttggagaag aaaatttgat agtaagactt ctaagggagg attatgtagg
     6361 agggacttta cttaaggatt ttgtttatca tttaggactt gaatgggatg agagttttgt
     6421 tttaaaacaa accaaaaatg aaagttttaa tcttttagga atggagctta tgtcaagatt
     6481 aaatcaaaaa gatttaaagc aggataatct taattctttg ctttttatgg caagaagaaa
     6541 atttgaaggc agcaaagaaa aaagattaaa atttgcagtg caaaaagata ttgctaaagc
     6601 ttatgtggat tattttgctt cttcacttga atgggtaaaa aacaaatatt tcccgcataa
     6661 aaattctctt tttactcctg tgaattggga agaatatgaa caaaattata ctttaaccca
     6721 tatgctaagt aaagattggg atgatgtggc ggattttata gcacaaatta ttgtttctaa
     6781 aaatgaaatc atcagttctt taaaagaaca gcttgaactt gcaaggaaag attagtcttt
     6841 cattgcagtt tcaagcattt ttttgatatt ttcaaagctt tcaaaatttt caggtgtgat
     6901 aaattctgct tttaagggtt ttttataaaa tttttctatt tcggcaacca aagccatgat
     6961 atcgatacta tcgataaaat cttcacttac tagattttcc atactctcat tgatatctgt
     7021 tctttctata ttgataaaaa attgtttgat ttcttgcatt ttttctcctt tagttttttg
     7081 aaattataaa atatttattt aaacaagttc ttttaaaacc tttctatcaa ttttaccatt
     7141 ttgattaagc ttaaatttgt cgagtttaat aaaatttttt gggatcatat aagaaggtaa
     7201 tttatctttc aaaaaatctt taaaattaat ttcttcttca ctttcataaa aacaaataat
     7261 atcttcttta aaaatacaag cactgttttt aatattcaca tgagaattta tcacgctttc
     7321 tatttctcca agttctattc tatgtcccat atattttatc tgattatctg ctcttccgta
     7381 gcataaaagc tctccaaatt cattataaga aacgatatct cctgttttat agagtaaatc
     7441 taaataatta tcatgtaaag gattttgaat aaaagcttgt ttggtttttt ctttgtcatt
     7501 ataataccct aaagacaaag aagttccacg cacgaaaagc tcccctttaa cacctatttg
     7561 tttaggactt atgaaattca tattttcatc aaaaactaaa agttctgtgt ttttgcacgc
     7621 ttttcctatc ggtaaaagtt cttcatcttt aaaagtgcga ttgatgatat aaaaagaaca
     7681 tacatcagtg atttctgttg ggccataaag gttggcaaat aaggcattgg gtaagtgttt
     7741 acgccaaata ttgagctgtt tattgggcat gatttcacca caaaaaagca tcttttttaa
     7801 ggcgtttaaa ctaaaattat tcaaagcttc agtatttgca aaataaatca gcaccgaagg
     7861 tacccaaaat atagtgctta ctttttcttt ttcaaggcat tctaaaattt tatttggaaa
     7921 ggcaaaaaga tgattaggta aaaggtgtaa agtcgctcct gattttacac ttgaaaaaat
     7981 atctaaaatg ctattgtcaa aataaaatgg cgcttgattg gctaaaattt cattctcatc
     8041 aaatttaaaa gtctcacaca cccaaaaagt ataatcaatc acactcttat gagctatgct
     8101 tactccttta ggaatgcctg tgctcccact tgtaaagaaa acatagagta aattagtatc
     8161 tatatgtttt tctttggcat gctttattaa actctcatct atattaaaac tttcaaagtc
     8221 ttgtgtataa agcgtaggta aatctaagtt aaaatttaag tcctttgaag tgataaaaag
     8281 tttaggcttt aaaacttcta tgactttttc tactctttct ttaggacttt tttcatctaa
     8341 aagtgtataa aaatttccac tgagtgccac tccaaaaaat gaaatcaaac aatcaatccc
     8401 tttaggcaag atgattaaaa caggagcttg agtaggatta tcatttccta aagtttttaa
     8461 aatttcactg gctagttttt tagaaaagag atcaaagtct ttgtaagtga tttcctttct
     8521 ttctttgaca aagggttcta caaaagcagt tttttcgcta aatttgatta aacttttttc
     8581 taaaaaatca tagatatgag ttgtcatgat ttaccttttt aattttttgt aatataatat
     8641 cgataaatta ataaaaaagg cctttatatg ctcataaacc aaagctttga aatcgattct
     8701 tgtgatgatg tagaattaaa tataaaaaga actagcaaac ttgaataccg tataagttat
     8761 gatgatgaaa aagagattaa agctatagtt tttataatag gaggttatgg agccaatgca
     8821 aatatatatt ttttagactc ttatagaaat tatattgcta aaaattttga tgttgtagca
     8881 gtgcatgttt tttatcattg tttttgtcaa aggcgttcgg atgttgaaaa gtattcaaca
     8941 ttagcagatt ttacaaaaga tgatttaaaa ttaatagaaa aagtgcttcg taaatacaat
     9001 attccatgtg atcaattagc caataatact gtagttagtc attgtgaata tttgagcgag
     9061 attatgacag aattaaaaat gttaaatcga ttgccttatg attttgaaga aagactaagt
     9121 gcaactttta ttccttcgcg tggagaatat caaaattttg gcattatggc agctattgat
     9181 catatcaatg ctttaaaaga tctagttaaa cgctttccaa aacttgcaga tttaccaaaa
     9241 atttatgggg gggggtctta tggaggatac ttagccttgc tcatagcaaa aatagctcct
     9301 tggtatgtgg atggcgtgat tgataattcg ggttcggctg ttccaccgct taattatatt
     9361 attggtagag agttggaatt taaaagcaaa gatactaatg gggatatgta tatgcagggc
     9421 gatcattttt ttgtgagttg ttttctaaaa acccactgga c
//
LOCUS       DAPIWQ010000058         9434 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.058, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000058 DAPIWQ010000000
VERSION     DAPIWQ010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9434
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.058"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            183..1343
                     /gene="pglE"
                     /locus_tag="RJ267_000985"
     CDS             183..1343
                     /gene="pglE"
                     /locus_tag="RJ267_000985"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HDV7388851.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKAY
                     SKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENEIVLIEDAAEAL
                     GSFYKNKALGTFGEFGAYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGECFSFLDELENS
                     RSNRWLSTALIDFDKNELNSCQKDINISQKNITLHPKISKLIEDLKNEQIETRPLWKA
                     MHAQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA"
     gene            1345..3117
                     /gene="pglF"
                     /locus_tag="RJ267_000986"
     CDS             1345..3117
                     /gene="pglF"
                     /locus_tag="RJ267_000986"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HDV7388852.1"
                     /translation="MIFYKSKRLAFFLTSDIVLILLSVYLAFSLRFSGDIPSIFYHGM
                     MVSAIILLVLKLSFLFVFRIYKVAWRFFSLNEARKIFIALLLAEFCFFLIFYFFSDFF
                     NPFPRSAIVIDFVLSYMFIGTLRISKRMLVDFKPSRMKEEETPCIVVGATSKALHLLK
                     GAKEGSLGLFPVGVVDARKELIGTYCDKFIVEEKEKIKSYVEQGVKTAIIALRLEQEE
                     LKKLFEELVAYGICDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVAAFLKDKVVLV
                     SGAGGTIGSELCKQCIKFGAKHLIMVDHSEYNLYKINDDLNLYKEKITPILLSILDKQ
                     SLDEVLKTYKPELILHAAAYKHVPLCEQNPHSAVINNILGTKILCDSAKENKVAKFVM
                     ISTDKAVRPTNIMGCTKRVCELYTLSMSDENFEVACVRFGNVLGSSGSVIPKFKAQIA
                     NNEPLTLTHPDIVRYFMLVAEAVQLVLQAGAIAKGGELFVLDMGKPVKIIDLAKKMLL
                     LSNRNDLEIKITGLRKGEKLYEELLIDENDAKTQYESIFVAKNEKVDLDWLNKEIENL
                     QICEDISEALLKIVPEFKHNKEGV"
     gene            3117..4010
                     /locus_tag="RJ267_000987"
     CDS             3117..4010
                     /locus_tag="RJ267_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HDV7388853.1"
                     /translation="MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTAL
                     DKIAHEVVVFDALYILDISGMQIENAISLNKAHEIGQGEDRSTRSYFYRAVKLRRCVL
                     SDPYPSVLNNELCVTASMPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSR
                     LVYFCFALVLFVITCFLFQKGFFSLFDNQAIGIEHMFESTIAITLALAIFDLAKTLIE
                     QEVLGRTKKEEGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGV
                     SLLLLGLSVYLFTVKYKNNNI"
     gene            4123..4515
                     /locus_tag="RJ267_000988"
     CDS             4123..4515
                     /locus_tag="RJ267_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HDV7388854.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKN
                     EDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGSGEGAAE"
     gene            4538..5383
                     /locus_tag="RJ267_000989"
     CDS             4538..5383
                     /locus_tag="RJ267_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HDV7388855.1"
                     /translation="MQKKYYELFFIVEEQYKNLFLDFAFDLGIEAIEEKDNGVYIRSH
                     ESLEEFSWALEIFAQKLTTTFNLNHKIISNLSLVEKENKDWIQEYKKGIKPILVDNVY
                     IHTTWQEEKKNCINIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGIL
                     GIIMAKFGCNVEICDTDELAIDSSLENARLNGVDFHKAWCGSIDKANGLYNLIVANII
                     VDVILILEKDIKNHLEDNAILILSGILDKYSTRIKEKFQDLELIDEMQINEWCSFVYK
                     NNKKG"
     gene            5387..7324
                     /gene="ftsH"
                     /locus_tag="RJ267_000990"
     CDS             5387..7324
                     /gene="ftsH"
                     /locus_tag="RJ267_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HDV7388856.1"
                     /translation="MNNNTQNNKGNPQGNNFFNKNPIFIFAIFAIIMIIIFKGFFDGN
                     GSFGGALNGNEVNKNVPYSELKKLIESGQINQVSIGQTTIKAISSSHNTVYTAKKVND
                     PELVSLLDSKNIAYGAYSETNWFTDILFSWVLPVFIFFGIWMFLASRMQKNMGSSILG
                     IGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVG
                     PPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFI
                     DEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAA
                     LLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANI
                     INEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIA
                     ETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVF
                     IGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLSGGQTIKDYSEKM
                     AESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGNKVREIIKEFEDQ
                     NSLPTRLQELEEVKTEVKVEE"
     gene            7321..7938
                     /locus_tag="RJ267_000991"
     CDS             7321..7938
                     /locus_tag="RJ267_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDV7388857.1"
                     /translation="MKDFIAKYGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLF
                     RAPKRELVCSDEKAIFAPMDGRVTKIENIHHKDLGECVEIAIKNALYDAGNFNTPFAM
                     SIIDIRLRHGLFLCSELKSAKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
                     HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA"
     gene            7948..8676
                     /gene="pssA"
                     /locus_tag="RJ267_000992"
     CDS             7948..8676
                     /gene="pssA"
                     /locus_tag="RJ267_000992"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HDV7388858.1"
                     /translation="MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIIL
                     SLICDGLDGRVARLTNSTSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLIT
                     AFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYAFISYDFLKPYGVVF
                     LVLQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIIFSFLYLYPLESLVILASL
                     YVLYGIIRVLYTIIVSKFKTRNQE"
     gene            complement(8667..>9434)
                     /locus_tag="RJ267_000993"
     CDS             complement(8667..>9434)
                     /locus_tag="RJ267_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HDV7388859.1"
                     /translation="DILYEKNVTIKFHSFQNFYEDFKSHKFNFNHEHQSIFKKNTSQQ
                     ITLLHPTRIRRPKFVNSTHALAKIIHSVAHIEFNAINLALDASYRFKNLPLQFYYDWL
                     EVADEEIKHFKLLNSALKELGYKYGNFPVHDNLESALEATKDSLSFRMGVVHRGLEAK
                     GLDANPFVVQKLQSSNHSIKNLLMEYLEIILNDEIKHVKKGDTWWKFANQNRYDFIEL
                     CKTFKQFSLAGKKLNIQARIKAGFTQEECEVIEKFYS"
BASE COUNT         3223 a         1092 c         1814 g         3305 t
ORIGIN      
        1 aataaaatac tccttaaatg ctttgaaagt atttataaaa aagaagactt agaaaagctt
       61 aaaaattggt atgaaaacaa gctttgacta taaaaagaat ttaaatattt gaatctttgt
      121 aaattttttt aggtaaaata gagtcaattt ataaaaattt tgttttacac aaaggataaa
      181 tcatgagatt ttttctttct cctccgcata tgggtggtaa tgaattaaaa tacatagaag
      241 aagttttcaa aagcaattat atagcacctt tgggtgaatt tgtaaatcgc tttgaacaaa
      301 gtgtcaaggc ttacagtaaa agtgaaaatg ccttagcttt aaattcagcc acagcggctt
      361 tgcatttagc tttaagggtg gcaggggtaa aacaagatga tattgttttg gcttcttctt
      421 ttacttttat cgcttcagta gcacctattt gttatcttaa agcaaaacct gtatttatag
      481 attgtgatga aacttataat atcgatgtag atttattaaa gcttgctatt aaagaatgtg
      541 aaaaaaaacc aaaagcattg attttaactc atctttatgg caatgcggct aaaatggatg
      601 aaattgttga aatttgcaaa gaaaatgaaa ttgttttaat cgaagatgct gctgaagctt
      661 taggaagttt ttataagaat aaagctttag gaacttttgg agaatttgga gcttattctt
      721 ataatggcaa taaaattatc accacttcag gtggaggtat gcttatagga aaaaataaag
      781 aaaagattga aaaagcaaga ttttatagca ctcaagctag ggaaaattgt ttgcattatg
      841 aacatttaga ttatggttat aattaccgct taagcaatgt tttaggagct attggcgtag
      901 cgcaaatgga ggttttagaa caaagagtgc ttaaaaaaag agaaatttat gagtggtata
      961 aagaattttt aggagagtgt tttagctttt tagatgaatt agaaaattca agaagcaatc
     1021 gctggttaag tacagctttg attgattttg ataaaaatga acttaattct tgtcaaaaag
     1081 atataaatat cagtcaaaaa aatattactt tgcatccaaa aatttcaaaa ctcatagaag
     1141 atttgaaaaa tgaacaaata gaaacaagac cattatggaa agctatgcac gctcaagaag
     1201 tatttaaagg agctaaggct tatcttaatg gcaatagtga gttatttttc caaaaaggaa
     1261 tttgtttgcc aagtggcacg gcgatgagta aagatgatgt ttatgaaatt tcaaaactga
     1321 tcttaaagag cataaaggct taaaatgatt ttttataaaa gcaaaagatt agcatttttt
     1381 ttaacttcag atattgtttt aattttactt agcgtttatc tggctttttc tttgagattt
     1441 agtggagata ttccgagtat tttttatcat ggtatgatgg tttctgctat tattttgctt
     1501 gttttaaaac tttcattttt gtttgttttt agaatttata aagtagcttg gagatttttt
     1561 tctctcaatg aagcaagaaa gatttttatc gctttgcttt tagctgagtt ttgttttttt
     1621 cttatttttt atttttttag tgattttttt aatccttttc caagaagtgc tattgtgata
     1681 gattttgttc tttcttatat gtttataggt actttaagaa ttagcaaaag aatgcttgtg
     1741 gattttaaac cttctagaat gaaagaagaa gaaactcctt gtattgtagt aggggcaact
     1801 tctaaggctt tgcatttgtt aaaaggtgca aaagaaggtt ctttagggct ttttcctgta
     1861 ggcgtagttg atgcgagaaa agagcttata gggacttatt gtgataaatt tattgtagaa
     1921 gaaaaagaaa aaataaaatc ttatgtagaa caaggggtaa aaactgccat tattgcttta
     1981 agacttgaac aagaagagct taaaaaactt tttgaagaac ttgtagctta tggtatttgc
     2041 gatgtaaaaa tattttcttt tacaagaaac gaagcaagag atatcagtat agaagacttg
     2101 cttgctagaa aaccaaaaga tttagatgat agtgctgtgg cggctttttt aaaagataag
     2161 gtagttttgg taagtggagc aggtggaact ataggcagtg aactttgtaa gcaatgtatt
     2221 aaatttggtg ctaagcatct tatcatggtt gatcatagtg agtataatct ttataagatc
     2281 aatgatgatt taaatttata taaagaaaaa attactccta ttttactgag tattttagat
     2341 aagcaaagtt tagatgaggt attaaaaact tataaacccg agcttatttt acatgcagcc
     2401 gcttataaac atgtgcctct ttgcgaacaa aatccacatt cagcagtaat caataatatt
     2461 ttaggaacta aaattttatg cgacagtgct aaagaaaaca aagtagctaa atttgtgatg
     2521 ataagtacag ataaagcagt acgaccaaca aatattatgg gttgcactaa gagagtttgc
     2581 gagctttata ctttaagtat gagtgatgaa aattttgaag ttgcttgtgt gcgttttggt
     2641 aatgttttag gttctagtgg tagtgtgata ccgaaattta aagcacaaat tgccaataat
     2701 gagcctttaa ctttaacgca ccctgatata gtgcgttatt ttatgcttgt ggctgaggca
     2761 gtgcaacttg ttttacaagc tggagctatc gcaaaagggg gagaactttt tgttttggat
     2821 atgggtaagc ctgtgaaaat catagattta gctaaaaaaa tgcttttact ttctaatcgc
     2881 aatgatttag aaattaaaat cacaggctta agaaaaggtg agaagcttta tgaagagctt
     2941 ttgattgatg aaaatgatgc taaaacacaa tatgagagta tttttgtagc aaagaatgag
     3001 aaggttgatc ttgattggct taataaagag atagaaaatt tacaaatatg tgaagatatt
     3061 tcagaggctt tattaaagat tgtacctgaa tttaaacaca ataaagaagg tgtataatgt
     3121 atataaaaga tatacaaaga tttgaagata atcgctatcg tgctagagct tatatgagtt
     3181 atattttaac aagaaatctg cccaataaac ttcctgatat tcaccttgaa acgattaaaa
     3241 cagctttgga taaaatagct catgaagttg ttgtttttga tgctttgtat attttagata
     3301 tttcaggcat gcaaatagaa aatgcgattt ccttaaataa agctcatgaa atagggcagg
     3361 gtgaggatag aagtactcgt tcttattttt atagagctgt aaaattaaga cgatgtgttt
     3421 tgagcgatcc ttatccttcg gttttaaata atgagctttg cgtgacagct tctatgccaa
     3481 tttacgatga taaaaataac ttgctttttg ttgtttgtat tgatatcaag cttgaagata
     3541 ttttaaagat tattcaagca ggaaaatttg aatttgtttt tactcagttt agtcgtttgg
     3601 tatatttttg cttcgcactg gttttatttg tgattacttg ttttttattt caaaaaggtt
     3661 tttttagtct ttttgataat caagctatag gtatagaaca tatgtttgaa agtaccatcg
     3721 ctataacttt ggctttagct atttttgatt tggcaaaaac tttgatcgaa caagaagtat
     3781 taggaaggac gaaaaaagaa gaaggtggaa ttcaaaaaac tatggtgaga tttttgggtt
     3841 ctattatcat tgctttagct atagaagctt tgatgttggt atttaaactt gctattggtg
     3901 atctttctca gatgatttat gcgatttatc ttatcggtgg agtgagtttg cttcttttag
     3961 gtttaagtgt atatttattt acggttaagt ataaaaataa taatatttga gtaaaaattt
     4021 aagtaaaaga tgatataatg ctgtttttta aaatttttta gcttgattaa taaggctaaa
     4081 aagggtaaaa taaaactata aaaactttga aaggacgaaa ttgtgaaatt gttagttgtt
     4141 gatgacagtt ctactatgag aaggattatt aaaaataccc taacaagact tggacacgat
     4201 gatgttttag aagctgagca tggcgttgaa gcttgggatt tattaactaa aaatgaagat
     4261 gtaaaagttt taattacaga ttggaatatg ccagaaatga atggcttgga gttggtaaaa
     4321 aaagtaagag cagagaaaaa atatgaagat atgcctatca tcatggttac aactgagggt
     4381 ggaaaagctg aagtgattac tgctttaaaa gctggcgtaa ataactatat tgtaaaacct
     4441 tttactccac aagttttaaa ggaaaaactt gaagatgttt taggaacagg aagtggagaa
     4501 ggtgcagctg agtaaaggct gatttttaaa attctaaatg caaaaaaaat attatgaatt
     4561 gttctttatc gtagaagagc agtataaaaa tttatttctt gattttgctt ttgatttagg
     4621 tatagaagcc atagaagaga aagataatgg tgtttacatt agatcccatg agagtttaga
     4681 agagttttca tgggcacttg aaatatttgc tcaaaaactt acaactactt tcaatttaaa
     4741 ccataaaatt atttctaatt taagtcttgt agagaaagaa aacaaggact ggatacaaga
     4801 atataaaaaa ggcataaaac ctatcttagt ggataatgtt tacatccata caacttggca
     4861 agaagaaaag aagaattgta taaatataaa gattaatcca gccttagcct ttggctcagg
     4921 acatcacgaa agcacatatt cttgtgtaaa atttttacaa aaattttcta aaagtaaatt
     4981 aagagcttta gatcttggtt gtggtagtgg aattttgggt attattatgg caaagtttgg
     5041 ttgtaatgtt gaaatttgtg atactgatga gttggctatt gatagttctt tagaaaatgc
     5101 aagattaaat ggtgtcgatt ttcacaaggc ttggtgtgga tctatagata aagcaaatgg
     5161 tttatataat ctaattgttg caaatatcat tgtagatgtg attttaattt tagaaaaaga
     5221 tattaaaaac catttagaag ataatgctat acttattttg tcaggaattt tagataaata
     5281 ttcaacaaga attaaagaaa aatttcaaga tttggaactc attgatgaaa tgcaaatcaa
     5341 tgagtggtgt agttttgtat ataaaaataa taaaaaagga taagtaatga ataataatac
     5401 ccaaaataat aagggtaatc cgcagggtaa taattttttt aacaaaaatc ccatttttat
     5461 ttttgcgatt tttgcaatta taatgataat tatttttaag ggattttttg atggcaatgg
     5521 ttcttttggc ggggcattga atggcaatga agtaaataaa aatgtccctt attctgagtt
     5581 aaaaaagctt attgaaagtg gacaaatcaa tcaagttagt ataggacaaa caacaatcaa
     5641 agcgatttca agctctcaca atactgttta tacagcaaaa aaagttaatg atcctgagct
     5701 tgtgagttta ctagatagta aaaatatcgc ttatggtgcg tattctgaaa caaattggtt
     5761 tacggatata cttttttcat gggttttgcc agtatttatt ttctttggta tttggatgtt
     5821 tttggcaagt cgtatgcaaa aaaatatggg aagttctata ttgggtatag gaagttctaa
     5881 gaagcttgta aattcagaaa aacctaaagt aaaatttagc gatgtagctg gtgttgaaga
     5941 agctaaagaa gaagtaaaag aaattgtaga ttttttaaag tatcctgaaa gatatattaa
     6001 attgggagct aaaattccaa aagggctttt acttgttggg cctccaggta caggaaaaac
     6061 tttgcttgca aaagcagttg caggtgaagc tgatgtgccg ttttttagtg tttcaggttc
     6121 gtcttttata gaaatgtttg tgggtgtagg tgcttctcgt gtgagagatt tatttgaaaa
     6181 tgcaaaaaaa gaagctcctg ctattgtttt tatagatgaa atagatgcta ttggtaaaag
     6241 tcgtgcagca agtggcatga tgggtggaaa cgatgaaaga gagcaaactt taaatcagct
     6301 tttggctgaa atggatggct ttgggacaga aagttcccca gtcattgttt tagcagcaac
     6361 aaatcgccca gaagttttag atgcagcgct tttaagacca ggaaggtttg atagacaagt
     6421 tttagttgat aaacctgatt ttaaaggtag gtgtgatatt ttaaaagtgc acatgaaaga
     6481 tgtcaaaatc tccccaaaag ttaaagtaga agatatagca cgcttaaccg cagggcttgc
     6541 aggagctgat cttgcaaata ttattaatga agcagcgctt ttagcgggta gggattctaa
     6601 aaaatatgta gaacaaaatg atttagttga agctgttgaa agagctatag cagggcttga
     6661 gaagaaatca cgtcgtatta atgaaaaaga aaagaaaatt gttacttatc atgaatgcgg
     6721 tcatgctttg attgctgaaa ctaccaaagg cgcaaaacgt gtaagtaagg tttctgtgat
     6781 tccgcgtggt cttgcggctt taggttatac tttaaatact cctgaggaaa ataaattttt
     6841 aatgcaaaaa catgaactta tcgctgaagt agatgtactt ttgggtggtc gtgcagctga
     6901 agaagtgttt ataggtgaaa tttcaacggg tgcaagtaat gatttagaaa gagcaaccga
     6961 tatcataaaa gctatgattt ctatgtatgg tatgagtgaa attgcaggac ttatggtact
     7021 tgaaaaacaa agaaatactt tcttaagtgg tggacaaact atcaaagatt attctgaaaa
     7081 gatggcagaa tctttagatg attatgtaaa gaaaaccttg gatgaacgct ataaagatgt
     7141 taaagatact ttaaatactt ataagggagc gattgagact atggttgcag ccctttatga
     7201 agaagaaact attgaaggta ataaagtgcg cgagattatt aaagagtttg aggatcaaaa
     7261 tagtctacca actcgtttac aagaactcga agaagttaaa actgaagtta aagtagaaga
     7321 atgaaagatt ttattgcaaa atatggatat ttaagtctta ttattttaag cttaattttt
     7381 atttttgtgt ggatttttta ttctttttcc atcttgctat tagcattaat tgtaatttgt
     7441 atttttcttt ttagagcgcc caaaagagaa cttgtttgta gtgatgaaaa agctattttt
     7501 gcacctatgg atggtagggt tactaaaata gaaaatattc atcataaaga tttgggtgaa
     7561 tgtgttgaaa ttgctattaa aaatgctctt tatgatgctg ggaattttaa tacacctttt
     7621 gcaatgtcta taatagatat tcgtttacga catgggcttt ttttgtgcag tgaattaaaa
     7681 tctgcaaaaa tgatgaatga aagagctttt attttggcaa aagttaaaga gaataaaacg
     7741 atagccttgc gaatctatgc aggttctttt gatagaaaat taaagcttga taatatttct
     7801 catgatttaa aagcaggaga tagaatgggt tttttaatta atggctctat aagtttactt
     7861 ttaccaaaag atactagaat tcatataggc ttaaatgatg aaattaaagc aggttcattg
     7921 ctaggctatt ttgcgtaagg aaaaataatg aataacagac cgcaactaat ttatatttta
     7981 cccaatcttt ttacagctgc ttcagctttt ttaggggtta tttctattat agcttcaata
     8041 catggaaatt attatacagc tttgatttat attattttat ctttgatttg cgatgggctt
     8101 gatggccgcg ttgcaagact tacaaattct acttcaaaat ttggagtaga atttgattct
     8161 ttagctgatc tagtagcttt tggagttgct ccagcggttc ttttttatat ggctataggt
     8221 tatgattttg gaaagcttgg atctttgatt acagcttttt ttgtggtttt tggagctatt
     8281 cgtttggcga gatttaatgt taccacaggc acttatgaac cctccgtttt tataggtctt
     8341 cctataccta ctgcagcagt tgtgagtgct atatggactt atgcatttat cagttatgat
     8401 tttttaaagc cttatggtgt agtttttttg gtgcttcaag caattttagg gcttttaatg
     8461 gtaagtaata tacgctatcc tagctttaaa aagcttgatt ttaatcgttc tagtgtttta
     8521 aaagttttga ttattttaat tataatattt tcatttttat atctttaccc tcttgaaagt
     8581 ttagtaattt tagcaagctt gtatgtgctt tatggaatta ttcgagtttt atatactatt
     8641 atcgtttcaa aatttaagac aagaaatcaa gagtaaaatt tttcaatgac ttcgcattct
     8701 tcttgagtga agccagcttt gattcttgct tgaatgttaa gtttttttcc tgcaagagag
     8761 aattgtttaa atgttttgca aagctcaata aaatcatacc tgttttggtt tgcaaatttc
     8821 caccaagtat ctcctttttt aacgtgtttt atttcatcat taagtataat ttcaagatat
     8881 tccattagaa gatttttaat ggaatgattg gaactttgaa gtttttgaac aacaaagggg
     8941 ttggcatcaa gccctttagc ttctaaacct ctatgaacta ctcccattct aaagcttaaa
     9001 gagtcttttg tagcttctag agcagattct aaattatcat gcactggaaa atttccatat
     9061 ttgtaaccaa gttctttaag tgctgaattt aaaagtttga aatgtttaat ttcctcatct
     9121 gctacctcca gccaatcgta ataaaattgc aaaggtagat ttttaaagcg ataactcgca
     9181 tctaaagcca ggttaattgc attaaattct atatgagcga ctgaatgaat tattttagca
     9241 agcgcatgag ttgaattgac aaatttaggc cttcttatac gcgtaggatg aagcaaggta
     9301 atttgttgtg atgtattttt tttgaaaatg ctttgatgct cgtgattaaa attaaatttg
     9361 tggcttttaa agtcttcata aaaattttga aaagagtgaa attttatagt tacatttttt
     9421 tcatataaaa tatc
//
LOCUS       DAPIWQ010000059         9150 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.059, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000059 DAPIWQ010000000
VERSION     DAPIWQ010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9150
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.059"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..634)
                     /locus_tag="RJ267_000994"
     CDS             complement(<1..634)
                     /locus_tag="RJ267_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HDV7388860.1"
                     /translation="MKKFLFILSLFCVLSYAYELKLNANITALKLDKQNLYIGTDKGE
                     ILQYNIKDKSLKELLSLPKIKNYYGDDFAKIYNIDIFKHTLLILSEGDFGAKNLSFYK
                     ENLQIKKLEENSIIKAFFINENTYLLISIGSEIELIDKSLKNIKKFNFSHSSLNDAVL
                     NEDKSRLIAGFESGEVELFDLKNWKMLKNYDKMHKDNIYQVDFKNNVILSC"
     gene            complement(639..1163)
                     /locus_tag="RJ267_000995"
     CDS             complement(639..1163)
                     /locus_tag="RJ267_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HDV7388861.1"
                     /translation="MMKKKLVLLGSAAVVFFAACAMNSGVSSEQIGLRKASLENENKV
                     NLVEANFTTLQPGESTRFERSYENAPPLIPHAIEDLLPITKDNNMCLSCHDKAIAADA
                     GATPLPASHYYDFRHNKTTGDMISDSRFNCTQCHVPQSDAKPLVGNSFKPEFKNEQLK
                     SRSNLIDVINEGVK"
     gene            complement(1160..1942)
                     /gene="napH"
                     /locus_tag="RJ267_000996"
     CDS             complement(1160..1942)
                     /gene="napH"
                     /locus_tag="RJ267_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HDV7388862.1"
                     /translation="MMKYLIARRIVQLGILALFSFKATDFILQGNLSSSRLFNTIPLS
                     DPFAVLQIILASWSIDLMALIGALIIFFIYGLLLGRVFCSWVCPVNLITDFAAFVRNK
                     LTLNNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVA
                     FILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQ
                     VLWMVGKESTSVKSGECIRCARCIEVCNDDALNFNIFDLRNK"
     gene            complement(1939..2679)
                     /gene="napG"
                     /locus_tag="RJ267_000997"
     CDS             complement(1939..2679)
                     /gene="napG"
                     /locus_tag="RJ267_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HDV7388863.1"
                     /translation="MKGRREFFVSAFKAACLCTGGGFLANLALKADDNYALRPPGAEN
                     EARFLSKCIRCGLCVKACPYDTLKLASLLDSPKNGTPFFKAREIPCYLCKDIPCIREC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDEK
                     DEGRIKNADTSKHFNVKKATNYLNDGEL"
     gene            complement(2697..5471)
                     /gene="napA"
                     /locus_tag="RJ267_000998"
     CDS             complement(2697..5471)
                     /gene="napA"
                     /locus_tag="RJ267_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HDV7388864.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSSMLGAQEEDWKWDKAVCRF
                     CGTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMNE
                     KGEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLA
                     KAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP
                     ILWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYN
                     HPEAMDMKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVEKENVITLDDEEAT
                     SLSYLGVKAGDKFEMKHQGVADKNWEISFDEFKKGLAPYTLEYTARVAKGDDNESLED
                     FKKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAF
                     SLTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLN
                     IMRDLEDGKIKFAWVQVNNPWQNTANANHWIAAAREMDNFIVVSDCYPGISAKVADLI
                     LPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKV
                     DNKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFNPNDAIAKGFDNTDVKGDERK
                     IQGSDGKEFTGYGFFVQKYLWEEYRKFGLGHGHDLADFDTYHKVRGLRWPVVNGKETQ
                     WRFNTKFDYYAKKAAPNSDFAFYGDFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFM
                     KAPERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQ
                     GDLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDF
                     KKCAVKIYKA"
     gene            complement(5718..6245)
                     /gene="tpx"
                     /locus_tag="RJ267_000999"
     CDS             complement(5718..6245)
                     /gene="tpx"
                     /locus_tag="RJ267_000999"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HDV7388865.1"
                     /translation="MSIVNFKGNPVKLKGNSVEVGADAPKVNLKAKDLSVIEIGAAGK
                     TQIILSVPSLDTPVCATEAREFNKKVASYNGAEVIVVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLINEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            complement(6344..7081)
                     /gene="peb2"
                     /locus_tag="RJ267_001000"
     CDS             complement(6344..7081)
                     /gene="peb2"
                     /locus_tag="RJ267_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family adhesin PEB2"
                     /protein_id="HDV7388866.1"
                     /translation="MKKILILSLAASFLNAEILVYGPGGPAPVLKELALKFEEKTKEK
                     VIVTAGPTPAWVDKAKENADLIFSGNTSMMDDFAKKIPSLSLENLSVLNVRPSGIIVR
                     PNNPKNIKNFEDILKDGINVMVVDGAGQVGLYEDMALKSAKRENLVKLRKNIKIYAKN
                     SKAAVDEWNNNPNIDALIIWSHWAKALGDDKALFIKDKNAVIYRAAEIAPTKKGLENK
                     KALEFVDFIKSQEAQKVWKKYTWKEVK"
     gene            complement(7120..9150)
                     /locus_tag="RJ267_001001"
     CDS             complement(7120..9150)
                     /locus_tag="RJ267_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HDV7388867.1"
                     /translation="MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLS
                     KGVAPQKIMLLTFTNKASKEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRNADKNIA
                     LKQASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDLYSLFQNKAHNQDFYTWFCQNY
                     EDQSIYAEIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEEKYEFDEILVDEYQDT
                     NTLQSSLIEAFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDAKIFSLNKNYRS
                     SRSILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMILTSGV
                     SLEEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFSSMLALVVNPKD
                     IMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRNYQLG
                     LFADLEELASETRFKFESEFDAHPILRLSKINDLCARNLEKIYLFLKKAMEIKHSLTL
                     VNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI
                     YKYYNFLTLGASEMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGSL
                     EEERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRFLIEAGLCKGELTID"
BASE COUNT         3025 a         1828 c         1123 g         3174 t
ORIGIN      
        1 cacaacttaa aataacatta tttttaaaat ctacttgata gatattatct ttatgcattt
       61 tatcatagtt tttcaacatc ttccaatttt tcaaatcaaa aagttctact tcgccactct
      121 caaaacctgc aattagtcta ctcttatctt catttaaaac tgcatcatta agactagaat
      181 gggaaaaatt aaattttttt atatttttta aacttttatc aatcaattct atttcagaac
      241 caatagaaat caaaagataa gtattttcat tgataaaaaa tgcttttatt atgctatttt
      301 cttcgagctt tttgatttgt aaattttcct tataaaaact taaattttta gcaccaaaat
      361 caccctcgct aagtattaaa agtgtatgtt taaaaatatc aatgttgtaa attttagcaa
      421 aatcatcacc ataataattt ttaatctttg gcaaagataa aagttctttt aaacttttat
      481 ctttaatgtt atattgcaaa atttcacctt tatcagtgcc tatatataag ttttgcttat
      541 caagctttaa agctgttata ttggcattta atttcagctc ataagcataa gacaaaacac
      601 aaaaaagact caaaataaaa agaaattttt tcatttattt actttacacc ctcattaatc
      661 acatcaatta aatttgaacg actttttaat tgttcatttt taaattcagg tttaaagcta
      721 tttcccacta aaggttttgc atcactttgt ggaacatgac actgagtgca attaaaacga
      781 ctatcgctaa tcatatctcc tgtggtttta ttgtgtctaa aatcataata atgactagca
      841 ggaagtggag ttgcaccagc atctgctgct atagccttat catggcagct taagcacata
      901 ttgttatctt tagttatagg taacaaatct tcaatagcat gcggaattaa tggtggtgca
      961 ttttcataag aacgctcaaa acgagtagat tccccaggct gtaaagttgt gaaatttgcc
     1021 tccactaaat ttactttatt ttcattttct aaacttgctt ttctaagtcc aatttgttct
     1081 gaacttaccc cactattcat tgcacaagcg gcaaaaaata ccactgcagc acttcctaat
     1141 aaaaccaatt tcttcttcat catttattcc ttaaatcaaa aatattaaaa ttcaaagcat
     1201 catcattaca aacttctata catcttgcac accttataca ctctcctgat ttcacgctag
     1261 tactttcttt tccaaccatc cacaaaacct gtttttcagg acaaatacgg atacattcat
     1321 aacatttagt gcatttatca ctatcatgct ttattttaag caaagcaaaa cgagaaataa
     1381 aagcataaaa agctcctagt ggacaaaaat gtgaacaaat tgccctagga cttaaaaaag
     1441 tatcgataca aaaaagtata aaggctacaa aaatccaaga acttgtagca aaaataatcc
     1501 ctctatgtat cattcctata taagaaaaac tttcaaacac aggcaatgaa aatacaaaag
     1561 aaaggactaa aaccaagacc aatacaaaat agcgtaaatt tttaggcaaa attaaaaatt
     1621 tattattaag ggttaattta tttcgcacaa aagcagcaaa atctgtgatt aaattaacag
     1681 gacaaaccca agagcaaaaa acccttccta aaagcaaacc atagataaaa aatataatca
     1741 aagctcctat taaagccatt aaatctatac tccagcttgc tagaatgatt tgcaaaactg
     1801 caaaaggatc acttaaaggt atggtattaa aaagtctaga agaacttaaa tttccctgca
     1861 agataaaatc tgtagcttta aaactaaaaa gcgctaaaat tccaagctga acgatgcgtc
     1921 tagcaattaa atacttcatc acagttctcc atcatttaaa taattggttg cttttttaac
     1981 attaaaatgt tttgaagtat ctgcattttt tatacgacct tcatcttttt catcccagcc
     2041 ttttacataa tgagatcctg cttttcccaa tacatactcc cttggcaaaa cacgaatggc
     2101 cggtttttca gtaatacaag ccagttcaca aagcccacaa cctacacaca cttcatgatc
     2161 cacactaggt agtaaaaaag catgtttggc ggtgcgttca ttgcgtttaa gctcaagttt
     2221 taaagcccta tctatcaaag gacaagctct ataacaagca tcacattgaa ttccccagtg
     2281 tgccacacaa gaagcactat caacaatagc aatacccatt ttcaaagatt ctataccctg
     2341 ctctaaatgc tttttatcta aagcatcagt tggacattct ctaatgcaag gaatatcctt
     2401 gcaaagataa caaggaattt ctcttgcctt aaaaaaaggc gtaccatttt ttggactatc
     2461 taacaagcta gcaagcttta aagtatcata aggacaggct tttacacaaa gcccacaacg
     2521 aatacattta cttaaaaatc tagcttcatt ttcagcccca ggaggacgca aggcataatt
     2581 atcatcagct tttaaagcca aattagccaa aaatccacct cctgtacata aacatgcagc
     2641 cttaaaggca ctaacgaaaa attctcttct acctttcatt taatcaaaac cctaaattaa
     2701 gctttataaa tttttacagc acatttttta aagtcagttt gttttgaaag cggacaagtc
     2761 gcatccaaag taactttatt gatatataca ttctcatcaa accacggcac atacacaagt
     2821 cctacaggcg gtttgtttct tccacgcata tctactcttg cttttacttt accacgacga
     2881 gattccaccc aaaccaaatc accttgattt aagcctaatt tctctccatc tttctcactc
     2941 atatagcaaa gtgcttcagg cacagcacgg taaagctcag gcacacgcat agtcatagtt
     3001 ccactatgcc aatgctctaa aacccttcct gttgcaagcc agaacggata ctctttactt
     3061 ggtctttcag gtgctttcat aaatggccta aagaaaattt tagccttatt tttaatactg
     3121 tgctcttttt catctttagg agctattaaa tccccatttg taagcatttt gttaaaatca
     3181 ccataaaaag caaaatctga atttggagcc gcttttttag cataataatc aaatttagta
     3241 ttaaatctcc actgtgtttc cttgccatta accacaggcc atcttaaacc ccttacttta
     3301 tgataggtat caaaatccgc taaatcatgt ccgtgtccta agccaaattt acgatattct
     3361 tcccaaaggt atttttgaac gaaaaagcca tagcctgtaa attcttttcc atcactgcct
     3421 tgaatttttc tctcatcacc tttaacatcg gtattatcaa agccttttgc gatggcatcg
     3481 tttggattaa agctttttgc ttctttattg gcaaatagca catcaaaaag tgtatcatct
     3541 tcgctataac ccatagcttt tgcctcttct aaaacgcttg gcaaggtaag cttattatcc
     3601 actttttgct ctttccaaac ttctttaagc ttaaagcgtt ttgcaaattc taaaatttgc
     3661 caagtatcac tcatggcagc acctacaggt aagacttgtt gtttccaatg ttgagttctt
     3721 ctttcagcat taccataagc accccatttt tcataaatca tagcgcttgg taaaataaga
     3781 tcagctactt ttgctgaaat tccaggataa caatcactta caacaataaa attatccatt
     3841 tctcttgctg ctgcaatcca gtgatttgca tttgcagtgt tttgccatgg attattcact
     3901 tgcacccatg caaatttaat ttttccatct tctaaatctc tcatgatatt aagataagga
     3961 gaacctggtt ttgggttgat agtctttgca ggaactttcc aaattttttc agaaatttct
     4021 ctgtgttttg gattggctac aaccatatct gcaggcaaac gatgtgagaa agttcctact
     4081 tccctagctg ttccacaggc acttggctgt cctgttaaag aaaaggctcc actacctggt
     4141 ttagcttgct ttcctagcaa aaaatgtacc atataagctt gttcatttac ccaagaacct
     4201 cttgtgtgtt gattaaagcc catagtccaa aaacttacga ctttgcgatt tttctctatg
     4261 taaagattag ctaattcttg aagttttttc ttaaaatctt ccaaagactc attatcatca
     4321 cctttggcta ctcttgcagt gtattctaaa gtataagggg ctaaaccttt tttaaattcg
     4381 tcaaaagaaa tttcccagtt tttatcagcc acaccttgat gtttcatttc aaatttatca
     4441 cccgctttaa cgccaagata agataaagaa gtagcctctt catcatctaa agtgattaca
     4501 ttttcttttt caaccgtatc tttttcactt tccttaaatt ttggatgatt tggattattt
     4561 ctcataccat aaccaatatc agcataacca gttgcaaata cgcagtgatc tttgataaat
     4621 ttcatatcca tagcctctgg atgattataa acaatctctc ttgctatgta gttccaaata
     4681 gccaaatctg tatttggttt aaaaataatt tcaatatcag caatatttga agtacggtta
     4741 gaaaaagtgc ttagattaac aactttaacc ttatcaagat tgcttagttt tctatcactt
     4801 actcttgacc aaaggattgg gtgcatttca gccatattag ctccccaagt gataatagta
     4861 tctgtaagct ctatatcatc ataacagcct gatggctcat ctacaccaaa agtttgcata
     4921 aaaccaacca ctgcagaggc catacaatgt cttgcatttg gatcgatatt atttgttcta
     4981 aaacccgctt ttgcaagctt taaagcagca taaccttctt ggatagtgta ttgcccacta
     5041 ccaaaaatcc ctatacctgt aacgccgagt tcattgtagg cttttttaaa ttgtttttcc
     5101 atttcatcaa aggctctttg ccaagaaact tgttgaaatt tgcctttttt atcaaattcg
     5161 cctttttcat tcatgcgaag caaaggcata acaagacgat cttcaccata catgatctta
     5221 gcattaaaat aacctttgat acaattaagt ccgcgattta cgggtgctgc aggatcacct
     5281 tttgttgcta cgattttgcc atcttttctg gctatcataa ttccacagcc agttccacaa
     5341 aatctacaaa cagccttatc ccatttccaa tcttcttctt gtgcaccaag catagagctt
     5401 ggaacactaa gtcctgcaac actagcagca cttgcaatag cggtattttt aataaaatcc
     5461 cttctattca tccttattcc tccaaaataa aaaaatcatc ttattataaa aaatggagta
     5521 taaaaatctc ttgaaatttt aataaaaata ataattttaa agctctattt tataggagtt
     5581 ttattgtcct ttttatatta ttcttacaca aaataaatat taaaaataat caacttaaca
     5641 attaaaatat aatcaactta aaataataaa aaaatgaaga tataaaaatt aagccctaag
     5701 aatgggctta atcaaaatta atggcaacca caaccaccgc agcagctaga accaccaaaa
     5761 aatgcatcaa gttttgcaat atctggcatt tctgtgattt catttacaag ttctttatat
     5821 gccactttac cctctttaat cacaaatacg gcacgagcta aaagcccttc taaagcacct
     5881 tcatttatca aaacaccata tttttcacca aattcttttg ccacaaaatc acttgcaaca
     5941 cttaaatttt caataccttc tgtactgcaa aatcttccca tagcaaaagg taagtccata
     6001 cttactacaa tcacttcagc accattgtaa ctggctactt ttttattaaa ttctctagcc
     6061 tctgtagcac aaactggtgt atctaaactt ggaacactta aaatgatttg agttttaccc
     6121 gctgcaccga tttcaatcac gcttaaatct ttagctttaa gatttacctt aggagcatct
     6181 gctccaactt ctactgaatt tcctttaagt tttacaggat ttcctttaaa atttactata
     6241 ctcatttaat ttcctttttt gatattttaa acattattgc aattaatgtt ttaggagtaa
     6301 ttatatccta taaatattaa ttatttttta atttcactca aaattatttt acttctttcc
     6361 aagtatattt tttccacact ttttgagctt cctgactctt aataaaatct acaaattcta
     6421 aagctttttt attttctaaa cctttttttg taggagctat ttcagctgca cgataaatca
     6481 ctgcattttt atctttgata aataaagctt tatcatcgcc taaagccttt gcccaatgag
     6541 accaaatgat taaagcatca atatttggat tgttattcca ctcatctaca gcagctttgg
     6601 aatttttagc ataaattttt atatttttac gtaattttac caaattttct ctttttgcac
     6661 tttttaaagc catatcttca taaagtccaa cttgtcctgc accatcaacc accataacat
     6721 ttatgccatc ttttaaaatg tcttcaaaat ttttaatatt ttttggatta tttggacgca
     6781 cgataatacc tgatggacgc acatttaaaa cgcttaaatt ttccaaactt aaacttggaa
     6841 tttttttagc aaaatcatcc atcattgaag tattgcctga aaaaatcaaa tctgcatttt
     6901 cttttgcttt gtctacccaa gctggagttg gacctgcggt tacaatcacc ttttcttttg
     6961 ttttttcttc aaattttaaa gcaagctctt ttagcacagg agcaggacca cctggaccat
     7021 aaactaaaat ttcagcattt aaaaaacttg ctgctaaact taaaattaat atttttttca
     7081 taaaataaac ctttctttga taatataaag gaaattgtat caatctatag ttaactctcc
     7141 cttgcaaagc cctgcttcta taagaaaacg agaaggagcg aaagaagttt ttttattttt
     7201 atcatattta gcatagctta aataaagtat attttttgcc ctagttactg caacataaaa
     7261 aagccttctt tcttcttcta agcttccacc cattcccata agcttttgat taggaaagcg
     7321 accttgcgca agatcaatca caaaaacaag atcaaattcc aagcccttac ttgcatgtac
     7381 gctaagcaaa ttaactcctt tgccactact catttcactt gcacctaaag ttaaaaaatt
     7441 ataatactta taaatatcgc tataattttt tgtaagctct tttaagacat taaattttgt
     7501 ttctattttt tctaaatttt cactctttct taataaatcc acctgccctg ctttgttcgt
     7561 cgctctttta gttgcaagtt cttcgcaaat ttctctataa aaagaatttt cgcaaattaa
     7621 attgactaaa gtcaaagaat gttttatttc catagctttt tttaaaaaaa gatagatttt
     7681 ttccaaattt ctagcgcaca aatcattgat ttttgaaagt cttaaaatag gatgtgcgtc
     7741 aaattcactc tcaaatttaa aacgagtttc gctagctaat tcttctaaat ctgcaaaaag
     7801 cccaagttga taatttcttt tttgatgatt ttgcaaattt acatttttat caggatctaa
     7861 aaaacctttt attaaatttc catgccctaa ttttaaaagt gcgtcaaaaa tttcttttgc
     7921 taaaactcca cccacacctt tggtatattg aaccaaatga ataaaagcca tgatatcctt
     7981 aggatttacc acaagcgcaa gcatggagct aaaagcttta acttccaaac tttcaaaaaa
     8041 acttccactt ccctttctca cacttgcaat gccctgctcc cttaaagcta cttcaacccc
     8101 atcagcactt gagttgttgc gaaaaatcac ggcaatttct tccaaactta ctccgcttgt
     8161 aagtatcatt ttggctatat tttgatactg atcaaataat tcttcaaaag taagcaaaga
     8221 tggggcttta aactcatcat ttcttgtaac aataagttct tttggatata atctttcgtt
     8281 atttaaaatc actttattag ccaaagctaa aatacttctt gatgaacggt agtttttatt
     8341 taaagaaaaa atttttgcat ctttaaaacg atctttaaac ccacctatga tattaatatc
     8401 cgctccatta aaagcataaa tactttgatc ataatcccct acgcaaaaca aacttttact
     8461 atgaaaagcc tctattaaag aactttgcaa agtatttgtg tcttgatatt catctactaa
     8521 aatttcatca aattcatatt tttcttcttt taaaagatct tttagattga taagcaagtc
     8581 attaaaatcc acataattaa aacgcttttt ttcattatca tattctttta aaatatcttc
     8641 ataaatttca gcataaatac tttgatcttc atagttttga caaaaccaag tataaaaatc
     8701 ttgattgtgt gctttgtttt gaaacaaaga ataaagatcg tataaataac ttgattgata
     8761 aggttttata tcacttaaat gcctaaaagt tcttttttca tagacacttt taagtagagt
     8821 ttttaactcg cttgcttgct ttaaggctat atttttatcc gcatttctaa gtaaggtata
     8881 agccgtacta tgaaaagttc ctgcaagtat tttactggta atatttttat caaaaaattt
     8941 ccctaaacgc cctatcattt ctttgctggc tttatttgtg aaagtcaaaa gcatgatttt
     9001 ttgaggtgcc actcccttgc ttaaaagata agaaattctt gcaacaatag tagaagtttt
     9061 tcccgtccct gcacttgcaa taacaagatt gtgtccaaaa tcagcagtag cggcaagata
     9121 ttgttcatta tttaattttg aaagtggcat
//
LOCUS       DAPIWQ010000060         9136 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.060, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000060 DAPIWQ010000000
VERSION     DAPIWQ010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9136)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9136)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9136
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.060"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..747)
                     /locus_tag="RJ267_001002"
     CDS             complement(<1..747)
                     /locus_tag="RJ267_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis C-terminal
                     domain-containing protein"
                     /protein_id="HDV7388868.1"
                     /translation="MSSIFSTLSPFRLFVKCAVPNVISMAFISFYYIVDGIFVGKYLG
                     SDALAALALIIPFIMMSFALADMIAIGSAVQISMHLGLGKKNLARKIFSSSMLIIFII
                     SCFIGILEYFLGPVLIDCLNVSDEIKTMTKECMFVFALFAPFTMLSFALDNYLRICGK
                     TAYSMVMNVIIALSNIVLDFIFIVELGWGLFSAALATCLGLVLGGIFGIFPFLFQNLE
                     LKISSLYMNLKIFKNILYNGSSEFFGNISGS"
     gene            complement(928..1863)
                     /locus_tag="RJ267_001003"
     CDS             complement(928..1863)
                     /locus_tag="RJ267_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HDV7388869.1"
                     /translation="MKKIDLIVVGAGPTGIGCAVEAKLKNKEVLILEKSNNICQTLMQ
                     FYKDGKRVDKAYKGCEGTNHGHVPFEDGTKESTIETFQNALKEHNIEVEFGSEVESVK
                     NENGVFLVSTAKGVYECKNIIVAIGRMGKPNKPDYKLPMTLTKIINFNANSVLGNEKI
                     LVVGGGNSAAEYAVDLANSNQVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGID
                     INEVEDDNGKAKVNFTDGTSDIYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDENK
                     QSNVKGIFVAGDIATKNGASIVTGLNDAVKILSVL"
     gene            1934..3166
                     /locus_tag="RJ267_001004"
     CDS             1934..3166
                     /locus_tag="RJ267_001004"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HDV7388870.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKEKIILKLAQILRENFKIILEA
                     NKKDMANFTKSGAMKDRLLLDEKRILALCEGLEKIAYIEDPIGKISKGWKNYAGLSIQ
                     KMSIPLGLICVIYEARPSLSAEIAALMIKSSNACVFKGGSEAKFTNEAIFTLVNKVLK
                     EFDLQDCFAMFTQRDEILQILAFDDLIDVIIPRGSSNMIQEIANNTKIPLIKQNKGLC
                     HAFVDQSANLDMALKIILNAKCQRVSVCNALETLLIHEKIAKNFISLLIPEFEKFKVK
                     IHAHENALAYFNNSNLKIFKANENTFDTEWLDFALSVKLVKDCDEAIEHINKHSSLHS
                     ETIISNDASNIAKFQRLINSSCIYANASTRFSDGGEFGFGGEVGISTSKLHARGPMGI
                     EDICTYKYIINGEGQIRE"
     gene            3231..4247
                     /locus_tag="RJ267_001005"
     CDS             3231..4247
                     /locus_tag="RJ267_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HDV7388871.1"
                     /translation="MANAFFAALGVGIVLGLSVFFGKLNYGLIAMIGALSFLYVPNTP
                     LYHRMAVVMCCSFGIVSSFFLGILTHFLPAIFAFIPIGIMAMGSSILFRYYNIGAPGY
                     FFFVFSCVLGAYSPFEAKDFIFLVGLVFLGAMVANLMALLYSIVVIYGFKNALPSEIP
                     PREYIGFDAVFVDSLIMGSFVAFSIFIGTFLELERSYWIAISCTAIMQGVTLNSIWIK
                     QIQRIIGTALGVCFAWWLLSKQFHDIELILLMMSLFFIGQFLVNRNYALAMIFFTPYA
                     TYLSEAANFMSENADKLILARLIDVVIGSILGLLGGFVIYKPYLRVHFERIAKYIFRI
                     KQKA"
     gene            complement(4283..5041)
                     /locus_tag="RJ267_001006"
     CDS             complement(4283..5041)
                     /locus_tag="RJ267_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7388872.1"
                     /translation="MKIDTHAHIFLKKLNTVANARYKPDYDASFKDYKANLDHYDFNK
                     GVLVQPSFLGIDNEFLLQSIEKDENIKAIVVVDENIKFDELKKLKERKACGVRLNLIG
                     KELPNFKSMVWTQFFENLSKLKMQIEIQRDLDNNLVDIVENLIPYGCNIVIDHLARAN
                     ANLTNLEDLICLKNSRIFFKISGFYRAKIDYANNEQAVKFAKKIYEILKEHFPLSNFV
                     FGSDWPHTNFEANINFSSALVAFNEVVVSKKEQE"
     gene            complement(5052..6344)
                     /locus_tag="RJ267_001007"
     CDS             complement(5052..6344)
                     /locus_tag="RJ267_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HDV7388873.1"
                     /translation="MIMVFLIISSIIVAIILGYITRHNVGIFAMIFAYIIGAFFMDLA
                     PKKIIAFWPISIFFVIFAVSLFYNFATVNGTLEKLAGHLMYRFANHPYLLPFVIFVVS
                     AIIAALGAGFYTVLAFMAPLTFLLCDKIGLSKIAGAMAINYGALGGANFITSQSGIIF
                     RGLMENSGIEANEAFANSSIIFAFTIILPIVVLSFFVFNAFKNNIKISVISKPDPFDY
                     KQKTTLILMFMMIVVVLIFPVLNIIFPHNETISYFNKKIDIAMIAMIFVAIALFLKLA
                     DEKQVVALIPWGTLIMICGVGMLISIAVEAGAIKLFSDLVENEINVIFIPLIMCAIAA
                     FMSLFSSTLGVVTPALFPIVPSIAASSGLSEALLFSCIVVGAQASAISPFSSGGSLIL
                     GSCPDKYKEKLFKDLLIKAVPIGFIAAILATIIMSFIL"
     gene            complement(6463..7467)
                     /locus_tag="RJ267_001008"
     CDS             complement(6463..7467)
                     /locus_tag="RJ267_001008"
                     /inference="COORDINATES: protein motif:HMM:NF022646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HDV7388874.1"
                     /translation="MEKFIKQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIF
                     YGSYDWHSSVHSHWLLVKILKDFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHK
                     GFERPYGWGWFLKLTLEINLLAKENDKAEIWAKNLEGIADFFVKEFKEFLPKMDYPIR
                     VGTHFNSSFALYFALEYARFKKDQELEYCIIQSAKKWFLNDKNMQALEPCGDEFLSPV
                     LMEAVLLSAVLHKNDFVKFFKAYLPNLEAKEPATLFTPVSVSDRSDGKIAHLDGLNLS
                     RAWCFKILSNFCDENLKILLRNNATEHFDKAIAHIEDDYLGSHWLGSFALLALDVDIL
                     "
     gene            complement(7477..8430)
                     /locus_tag="RJ267_001009"
     CDS             complement(7477..8430)
                     /locus_tag="RJ267_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HDV7388875.1"
                     /translation="MISLDLLYYIVGILFLVFGILSFSNQAKDIKSRISGGVFWISYS
                     FTFLLAGVLPHFVMGCIVILLALIAGFNLLKPAKIEVSKEEKEYEIKHANIYKNKLFI
                     PALMVPLITLIGTFLFPYLSFFENKNATLMALIIGIIISSVVACFMFKASPKRAVKDA
                     AHTMDHISWAALLPQILATLGVVFVSTGMGDQVSKLLSSYISLDNAFIAVAVYCIAMA
                     LFTIVMGNAFAAFPVITAAIALPILIIQMHANPAIIGAIGMLSGFCGTLMTPMAANFN
                     IVPAALLNLDDKNGVIKAQFMSGLVLLVANIFLMYFLAFRF"
     gene            complement(8417..9109)
                     /locus_tag="RJ267_001010"
     CDS             complement(8417..9109)
                     /locus_tag="RJ267_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HDV7388876.1"
                     /translation="MEWLLLASIPLIVLGFALKINPFLVVTSVGIYAGLVSGFDFVKV
                     VSDIGKSFVDNRYVAIIWLILPLLAVLERKGLREQAKNLISKIKVASTGRILMCYFVF
                     RQVTAALGLLSLGGHAQMIRPLIAPMAEAAAKLKFKNLTHKDSQKIKAFSAGTDNVAV
                     FFGEDIFIAVHSILFIKAFYESNGIIVEPLHLSVWAIPTGILALIIHCSRLYLFDKRL
                     EKTYKGLSDDKS"
BASE COUNT         3361 a         1573 c         1205 g         2997 t
ORIGIN      
        1 agatcctgaa atattgccaa aaaactcact gcttccgtta taaagaatat ttttaaaaat
       61 ttttaaattc atatataggc tcgaaatttt aagctctaaa ttttgaaaca agaaaggaaa
      121 aattccaaaa ataccaccta aaacaagtcc caaacaagtt gcaagagcag ctgaaaataa
      181 gccccaaccc aactcgacta taaaaataaa atcaagcact atattgctca atgctataat
      241 cacattcatt accatactat aagcagtttt tccgcaaatt cttaaataat tatccaaagc
      301 aaaagaaagc atagtaaagg gtgcaaacaa agcaaaaaca aacatacatt ctttagtcat
      361 cgttttaatc tcatcgctaa catttaaaca atcaatcaaa acaggtccta aaaaatactc
      421 caaaattccg ataaaacaag agattataaa gataatcaac atacttgagc taaatatctt
      481 tctagctaaa ttcttcttgc ctaaacctaa atgcatagaa atttgcactg ctgatcctat
      541 ggctatcata tcagccaaag caaaagacat catgataaag ggaataatca aggctagtgc
      601 cgctaaagca tcacttccta gatattttcc aacaaaaatt ccatcaacta tataataaaa
      661 agaaataaaa gccatgctta taacatttgg cacggcacat tttacaaaaa gcctaaaagg
      721 gcttaaggtg ctaaaaatac ttgacataat aatccttaaa atatttaaaa ttaaaaatat
      781 tttaaaccgc taataaaatg ccaaaagtcc tagtatgtaa gaatttaaat aaagtaattt
      841 cgcaataagt ttattaatat ttattttatt ttgcatatga attttctaga ttaaactaaa
      901 ataaaaattt agcccaaagg ctaaatttta aagcacagaa agaattttca cagcgtcatt
      961 taaccctgta actatacttg ctccattttt agtagcaata tctcctgcta caaagatgcc
     1021 tttaacattg ctttgtttgt tttcatccat taaaggcacg cctttatcat caacattaat
     1081 cccacatttt tgtaaaaaat caagtggagt agaaccacca atagcataaa tgattctatc
     1141 ataaatatcg cttgtaccat cggtaaaatt tactttagct ttgccattat catcttctac
     1201 ttcattaatg tcaattccta gttttaactc taccttaccc gaatttccag cttcgtgaat
     1261 atctttaaga tttatatcat ttaatcttgt aaattctttt ttacgataac aaagactaac
     1321 ttgatttgaa tttgccaaat ccacagcgta ttctgctgct gaatttccgc cacctacaac
     1381 aagaattttt tcatttccca aaactgaatt ggcattaaaa ttaatgattt ttgttaaagt
     1441 cataggaagt ttgtaatcag gtttattagg tttacccatt ctacctatag caacaataat
     1501 gtttttacac tcataaacac ctttagctgt acttactaaa aaaactccat tttcattttt
     1561 aacgctctca acttcagaac caaattcaac ttctatattg tgctctttta aagcgttttg
     1621 aaaagtttct atagtgcttt ctttggtgcc atcttcaaaa ggaacatgtc cgtgattggt
     1681 tccttcgcat cccttataag ctttatctac tcttttgcca tccttataaa attgcattaa
     1741 agtttgacaa atgttatttg atttttctag tatcaaaact tctttgtttt taagcttggc
     1801 ttcaactgca cagcctatcc ctgttggacc tgcacctact acaattaaat ctattttttt
     1861 catttatatt tacctttcaa ttctaaattt ttttgtataa tttatcaagt tttttgtaaa
     1921 taaaggatta aaaatgcgaa atttgcttga aaatattaag aaaaattctc aaaaactact
     1981 taacttaaca cccaaagata aagaaaaaat tattctaaaa ttagctcaaa ttttaagaga
     2041 aaatttcaaa attatcctag aagcaaataa aaaagatatg gcaaatttca caaaaagcgg
     2101 agcaatgaaa gataggcttt tgttagatga aaaacgtatt ttagctcttt gcgaaggcct
     2161 agaaaaaatc gcttacatcg aagatcctat aggcaaaatt tctaaaggct ggaaaaatta
     2221 tgcgggtttg agcatacaaa agatgagtat tcctttagga ctcatttgtg ttatttacga
     2281 agcaaggcct agtcttagcg ctgaaatcgc agctttaatg ataaaaagtt ccaatgcttg
     2341 tgtatttaaa ggcggaagtg aagcaaaatt tacaaatgag gctatattta ctcttgttaa
     2401 taaagtactt aaggaatttg atttgcaaga ttgttttgct atgtttaccc aaagagatga
     2461 aatcttgcaa attctagcct ttgatgattt aatcgatgtg atcatacctc gcggaagttc
     2521 aaatatgata caagaaattg caaacaatac caaaattcct ctcattaagc aaaataaagg
     2581 cttgtgtcat gcttttgtag atcaaagtgc taacttagat atggctttaa aaataatcct
     2641 taatgcaaag tgtcaaagag taagtgtttg taacgcttta gaaacgcttt taatccatga
     2701 aaaaattgct aaaaatttta taagtctttt aatacctgaa tttgaaaaat ttaaggtaaa
     2761 aattcacgcc catgaaaatg ctttggctta ttttaacaac tcaaatttaa aaatttttaa
     2821 agcaaatgaa aatacctttg atacagaatg gcttgatttt gctttaagtg taaaattagt
     2881 aaaagattgc gatgaagcta tagagcatat caataaacac agctccttgc attctgaaac
     2941 cattatctca aatgatgctt caaatatcgc taaatttcaa cgccttataa actcatcttg
     3001 tatttatgct aatgcttcaa cgcgttttag cgatggagga gaatttggct ttggtggaga
     3061 agttggaatt tcaaccagca aattgcatgc aagaggtcct atggggattg aagatatttg
     3121 cacttataaa tatataatca atggggaagg acaaattcga gagtgaataa aatagaaata
     3181 ctaaagcaac accttaaaga aattgctaaa ttaaattcaa gcgaacaagt ttggcaaatg
     3241 ccttttttgc ggctttaggc gtaggtatag ttttagggct tagtgtattt tttggaaaat
     3301 taaactatgg actcattgcc atgataggag ctttgtcttt tttatatgtt ccaaacactc
     3361 ctttatatca tagaatggct gttgtgatgt gctgttcttt tggcatagtt tctagttttt
     3421 tcttaggaat tttaactcat tttttgcctg caatttttgc cttcatccct ataggaatta
     3481 tggccatggg aagttctatt ttatttagat actataacat tggtgcacct ggatattttt
     3541 tctttgtatt ttcttgtgtt ttaggagcct attctccttt tgaagctaag gattttatct
     3601 ttttagtagg tcttgttttt cttggagcaa tggtagctaa tttaatggct ttgttatatt
     3661 ctatcgttgt gatttatgga tttaaaaatg ctttacctag cgaaattcca cctagagaat
     3721 acataggttt tgatgcagtt tttgtggatt ctttgatcat gggttctttt gtggcttttt
     3781 ctatatttat aggaactttt ttagaacttg aaagaagtta ttggatagcc atttcttgca
     3841 cagctattat gcaaggtgta actttaaatt ctatatggat taaacaaatt caacgcatca
     3901 taggaacggc cttaggagta tgttttgcat ggtggctttt atctaaacaa tttcacgata
     3961 tagagcttat tttacttatg atgtctttgt tttttatagg acaattttta gtcaatcgaa
     4021 actatgcttt agctatgatt ttctttactc cttatgctac ttatctttcg gaagcagcta
     4081 attttatgag tgaaaatgca gataaattaa tactcgctcg tttaattgat gttgtaatag
     4141 gaagcatttt agggctttta ggtggttttg tgatttacaa accttatcta agagtgcatt
     4201 ttgaacgcat tgcaaaatac atctttagga taaaacaaaa agcttaaaag ccaaataaag
     4261 cacaagcatt atcccctaaa atttactctt gttctttttt agatacgaca acttcattaa
     4321 aagccactag agccgatgaa aaattaatat ttgcttcaaa atttgtatgt ggccaatcgc
     4381 ttccaaaaac aaaattgcta agtggaaaat gttcttttaa aatttcatat attttctttg
     4441 caaattttac agcttgttca ttattagcat agtctatttt tgctctataa aaaccgctaa
     4501 ttttaaaaaa tattctagag ttttttaagc aaattaaatc ctctaaattt gttaagtttg
     4561 cattagctct tgctaaatga tcgataacaa tattacaacc ataaggaatt aaattttcaa
     4621 caatatcaac aagattatta tctaaatctc tttgaatttc tatttgcatt ttaagcttac
     4681 ttaaattttc aaaaaattga gtccaaacca tacttttaaa atttggtaat tctttgccaa
     4741 ttaaatttaa tctaactcca caagcttttc tttcttttag ttttttaagc tcatcaaatt
     4801 taatattttc atcaaccaca actatagctt ttatattttc atctttttct atactctgaa
     4861 gcaaaaattc attatcaata cctaaaaaac ttggctgaac taaaacccct ttattaaaat
     4921 cataatgatc taaatttgct ttataatctt taaaactagc gtcataatca ggcttatatc
     4981 ttgcatttgc aaccgtattt aactttttca aaaatatatg tgcgtgagta tcaatcttca
     5041 ttaaattatc cttataaaat aaaactcatt ataatagtag ctaaaatcgc cgctataaat
     5101 cctataggca cagctttaat aagtaaatct ttaaataatt tttccttata tttatcaggg
     5161 caagatccta aaattagact tcctccagaa gaaaaaggag aaatagcaga agcttgagcc
     5221 cctacaacaa tacaagaaaa aagcaatgcc tcgcttaatc cactgcttgc agcaatgctt
     5281 ggaactatag gaaaaagcgc tggagtaacc acacccaaag tacttgaaaa aagcgacata
     5341 aaagctgcaa tagcacacat tattaacgga ataaaaatca cattgatctc attttctaca
     5401 agatctgaaa ataattttat agcccctgct tcaactgcta tgctaattaa catccctact
     5461 ccacaaatca ttatcaaggt tccccaagga attaaagcaa caacttgttt ctcatcggcc
     5521 aattttaaaa ataaagcaat ggcaacaaaa atcatggcta tcatggctat atctattttt
     5581 ttattaaaat aactaattgt ctcattatgt ggaaaaataa tatttagcac aggaaagatt
     5641 aaaacaacaa caatcatcat aaacatgaga attaaagtag ttttttgttt ataatcaaat
     5701 ggatcaggtt ttgaaataac actaattttt atattatttt taaaagcatt aaacacaaaa
     5761 aaagataata ccacaatagg caagattata gtaaaagcaa aaataatact agaatttgca
     5821 aaagcttcat ttgcttcaat gcctgaattt tccatcaatc ctcgaaaaat aatcccgctt
     5881 tgagaagtta taaaatttgc tcctcccaaa gcaccataat ttatagccat agctccagca
     5941 attttgctta aaccgatttt atcgcaaagt aaaaaagtaa gtggtgccat aaaagctaaa
     6001 actgtataaa aacctgctcc taaagcagct ataatagcac taaccacaaa aataacaaaa
     6061 ggaagcaaat aaggatgatt agcaaaacga tacatcaaat gtccagctaa tttttcaaga
     6121 gttccattta cggttgcaaa attataaaac aatgagacag caaaaataac aaaaaatata
     6181 gaaataggcc aaaaagctat gattttttta ggagctaaat ccataaaaaa agctcctata
     6241 atataagcaa aaatcatagc aaaaattcca acattatgtc tagtaatata gcccaaaata
     6301 atagccacta taatactaga gatgattaaa aaaaccatta tcatccttta aaatattata
     6361 gggcttataa tatcaaaaaa tatatttttc aaagcataaa aacaaaatct aaatttaaaa
     6421 aatatctatt tagcaacaaa tttactcatc ttatgaaatt ttttataaaa tatccacatc
     6481 cagagcaagc aaagcaaagc ttcctagcca atgcgaccca agataatcat cttctatatg
     6541 agctatagct ttatcaaaat gctctgtagc attgtttctt aaaagaattt ttaaattttc
     6601 atcgcaaaaa tttgaaagta ttttaaaaca ccaagcacga cttaaattta acccatctaa
     6661 atgtgctatt ttaccatcgc tcctatcact cacactcaca ggggtaaata aagttgcagg
     6721 ctcttttgct tctaaatttg gcaaatatgc tttaaaaaat tttacaaaat catttttatg
     6781 taaaacagca cttaaaagca ccgcttccat caaaacagga gataaaaact catctccaca
     6841 aggctctaaa gcttgcatat ttttatcatt taaaaaccac tttttagcac tttggatgat
     6901 gcaatactcc aattcttgat cttttttaaa tcttgcatat tctaaagcaa aatacaaagc
     6961 aaaagagcta ttaaaatggg ttccaactcg tataggataa tccatcttag gtaaaaactc
     7021 cttaaattct ttaacaaaga aatcagctat gccttctaaa tttttagccc aaatttcagc
     7081 tttgtcattt tctttagcaa gtaaatttat ctccaaagtc agttttaaaa accatcccca
     7141 tccataaggt ctttcaaaac ctttgtgtgc agggttttga agatatttaa gctctccttc
     7201 tgctttttct ttgctaaatt gagaatctag agctttgatg atttcatcct ttggagcaaa
     7261 atgagaaaaa tcttttaaaa ttttcaccaa aagccagtga gaatgcacgc tagaatgcca
     7321 atcataagaa ccataaaata taggatacat aagttttggc ggtttaatat cattgatatc
     7381 attaaaagaa tgtgtaattt tatttggcaa ttctctaaaa atattttcta gtgcaataaa
     7441 gctaaattgt tttataaatt tttccattgt ttctccttaa aatctaaaag ctaaaaaata
     7501 cattaaaaag atattagcca caagcaaaac aagtcctgac ataaactggg ctttaattac
     7561 gccattttta tcatccaaat ttaaaagtgc cgcaggaact atattaaaat ttgcagccat
     7621 aggcgtcatt aaagttccgc aaaatccact aagcattcca atcgctccta taatagcagg
     7681 atttgcatgc atttgtatga ttaaaatcgg caaagcaata gcagcagtaa tcacaggaaa
     7741 agctgcaaaa gcattgccca ttactatagt aaaaagcgcc atagcgatac aatacacagc
     7801 tactgcaata aaagcattat ctaaactaat ataactagat aaaagtttag atacttgatc
     7861 gcccattcct gtagaaacaa aaactacccc aagtgtagcc aaaatttgcg gtaaaagcgc
     7921 tgcccaacta atgtgatcca tagtatgtgc tgcatcttta acagctcttt taggagaagc
     7981 cttaaacata aaacaagcaa ctactgaaga aataattata cctataatca aagccatcaa
     8041 tgtagcattt ttattttcaa aaaaactcaa atagggaaat aaaaaagtcc caataagtgt
     8101 aatcaaagga accattaaag caggaataaa aagtttattt ttataaatat ttgcatgttt
     8161 tatctcatat tctttttctt ctttgctaac ttcgatcttt gctggtttta ataaattaaa
     8221 tcctgctata agtgctagta aaatcactat acaacccatc acaaaatgag gcaaaactcc
     8281 tgctagtaaa aaagtaaaac tataacttat ccaaaatacc ccgccgctta ttcttgattt
     8341 tatatcttta gcttgattag aaaaacttaa aattccaaaa actaaaaata aaattcctac
     8401 aatataataa agtaaatcaa gacttatcat cactcaaccc tttataagtt ttttccaatc
     8461 ttttatcaaa taaataaagt ctagagcaat ggataattaa agccaaaatt ccagttggta
     8521 tagcccaaac tgataaatgc aatggctcaa caataatacc attgctctca taaaaagctt
     8581 taataaataa aatagaatgc acggctataa aaatatcctc tccaaaaaat acagcaacat
     8641 tatccgttcc cgcagaaaaa gctttgattt tttgactatc tttatgtgtt aagtttttaa
     8701 atttaagctt agctgcagct tctgccatag gggctattaa aggtcttatc atctgtgcat
     8761 gtccgcctaa agataaaagc cctaaagctg cagtaacttg tctaaaaaca aaataacaca
     8821 ttaaaattcg tcctgtactg gcaactttta ttttggatat taaattttta gcctgctctc
     8881 ttaagccttt gcgttccaaa acagcaagta aaggtaaaat aagccaaatt atagcaacat
     8941 agcgattatc tacaaaagat tttcctatat cactaacaac cttaacaaaa tcaaaacctg
     9001 aaacaagtcc agcataaatt ccaactgaag ttaccactaa aaaggggtta atctttaaag
     9061 caaaacctaa aacaatcaaa ggtatagaag caagaagtaa ccattccatc aaccatctcc
     9121 acaatatgaa ttagaa
//
LOCUS       DAPIWQ010000061         9104 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.061, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000061 DAPIWQ010000000
VERSION     DAPIWQ010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9104)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9104)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9104
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.061"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(54..611)
                     /locus_tag="RJ267_001011"
     CDS             complement(54..611)
                     /locus_tag="RJ267_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HDV7388877.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVP
                     AKTRDANAKAFDLGVKYATQAKPYS"
     gene            complement(608..1453)
                     /locus_tag="RJ267_001012"
     CDS             complement(608..1453)
                     /locus_tag="RJ267_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HDV7388878.1"
                     /translation="MAFNYDEYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKAKFESMDFEERKDKFPTGILHEDNSQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            complement(1454..2578)
                     /locus_tag="RJ267_001013"
     CDS             complement(1454..2578)
                     /locus_tag="RJ267_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HDV7388879.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGISVAIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASIAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIKVYNRKKFEGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGVIVKKNMERLIGKIKNNQEDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAIQRLREQGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVTSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            complement(2587..2898)
                     /locus_tag="RJ267_001014"
     CDS             complement(2587..2898)
                     /locus_tag="RJ267_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HDV7388880.1"
                     /translation="MSMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVHPESCIGCTECEIHCPDFAIMVAKRDEFKFAKLTAEAKDRAVAVKNNKYKKL
                     A"
     gene            complement(2913..3782)
                     /gene="sucD"
                     /locus_tag="RJ267_001015"
     CDS             complement(2913..3782)
                     /gene="sucD"
                     /locus_tag="RJ267_001015"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HDV7388881.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGVTPHKG
                     GQTHLGKPVFDTVADAVKATKADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETKAIVMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            complement(3792..4955)
                     /gene="sucC"
                     /locus_tag="RJ267_001016"
     CDS             complement(3792..4955)
                     /gene="sucC"
                     /locus_tag="RJ267_001016"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HDV7388882.1"
                     /translation="MNIHEYQAKAIFADNGIPTLKGKVAFSVDEAVANAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSF
                     DDSALYRHPEIAELRDTTEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASPETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKTILDNSNLKNIKAATNLKNGAELVKSLVG"
     gene            complement(4956..5858)
                     /locus_tag="RJ267_001017"
     CDS             complement(4956..5858)
                     /locus_tag="RJ267_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDV7388883.1"
                     /translation="MKITVIGAGNVGSSVAYALILREIANEIVLVDINEDLLYAKELE
                     LTQSIAALNLNIDLLCTKDYTHTKNSDIVLFSAGFARKDGQSREELLQLNTSIMLDCA
                     KKIKDFTEDPLFIILTNPVDFLLNTLYESGIFSSKKIIAMAGVLDNARFKYELAKKLN
                     VKMSRVDTRLIGFHNDDMVLVKSYASVKNKNISEFLNEEEFEDLENEVKTGGAKVIKH
                     LKTSAYLAPASACIRMLESIRSGEFLPMSVILHGEFGVQNKALGVMARLGLEGVIEIM
                     KMDLSLQEKDKLEKSLIKYQYKGE"
     gene            complement(5855..8059)
                     /locus_tag="RJ267_001018"
     CDS             complement(5855..8059)
                     /locus_tag="RJ267_001018"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HDV7388884.1"
                     /translation="MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGR
                     ILATFSEYLKEEQRCEDALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGY
                     MLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEI
                     LDATFMDVQKLQEFYTKEIKASKDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELF
                     IEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYNEILAKSADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPSKLGSVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERSELSGAEAIFWLDSKRASNKIMITLVQNRLKEKGKNVA
                     ILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLNGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCGNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALEL
                     SSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRPSATFNAILEKIGQR"
     gene            complement(8176..>9104)
                     /locus_tag="RJ267_001019"
     CDS             complement(8176..>9104)
                     /locus_tag="RJ267_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HDV7388885.1"
                     /translation="VKNKGIMEIHTQSDTASAKISSDNKEIHLKNLSYIYRKHSNSSN
                     STFDIATNTQNISFGGANVALILADSNKTLAFDRVEADLKGNALDLKGSRGNAKFDLY
                     YSSNDLNLNVSNIDDNYLNEFLQKQAVQDGVFNLSIKGSGLEYFDGQIDFKNTYVKDL
                     RGINQLISFIDTVPSLLMFKSPTFNQKGLSLHDGKIIFNRKKDLLSVSAINLNGDSVD
                     IYGLGSANLRLNTVDFSLELKTLKSASEAISKVPILNYVILGKNQEISTNLKIDGSID
                     DPKFHTEILTDTLKTPFNLIKNIIQLPANLLN"
BASE COUNT         2818 a         1880 c         1161 g         3245 t
ORIGIN      
        1 tatttgcaat gtgtaaaatt ttagaagtta aattccgcat gatgcggaat ttattatgaa
       61 tatggttttg cttgagtggc gtattttaca cccagatcaa aagctttagc atttgcatca
      121 cgagtttttg caggaaccat atgaagcata gtttctttta aaacatctaa atctatacat
      181 ttgctcatat aagcagcaat tgcaagtgca acaactgatt gagtagccac atttcctacc
      241 tcatctttag ctatggtgat aatagggatt tcaaaaattt gccatttttt ataatcttca
      301 ctttcaggat gtactaaatt tggctctaca actataatac ctccttcttt tacaccccca
      361 cgaaaacctt tataaccctt atctgcagtc gaaagcataa aatctacttc cccttctaca
      421 gcataaggaa ataaaatttc tttatcatca atgataatat ccaccttagt agggccacca
      481 cgcacttgtg aagtgtaagt agaagcctta aaagcttgac gaccttcttt aatggctgct
      541 tctgctaaaa tttctcctgc ggtgataaca ccttgtccgc cttcaccgcc aaatcttaat
      601 tgatatttca ttttaaagct cctaaatcca ccattctttt ttctttggct gcacgacgta
      661 cttcttcata agcgtggcag tattctggct gagaattatc ttcatgtaaa attcctgttg
      721 gaaatttatc ttttctttct tcaaaatcca tgctttcaaa tttagcttta tccacaacgc
      781 gatttttaat ccaatcaagc atagctacag cttcgcccat tttgtttttt ctgcctagat
      841 tgatatgaca atttgaaaaa acatctacaa aactataacc cttatgcgct aaagccttat
      901 aaattaaatt ttcaagctta ttagcttcga tcacattacc ccttgccaca aaagaagctc
      961 ctgcagcttt agttaattca cacgcatcaa aattagggtc aatatttcca aattgagctg
     1021 ttactgtata aaaacctttt ggagtggttg ggcttgtttg ggaattcgta agtccataga
     1081 tgaaattatt gattacaata tgtgttaaat caatatttct gcgacaacca tgtatagtat
     1141 gatttccacc aattgccaaa gtatccccat ctccacttac tacaataaca tgtttactag
     1201 gattggctag tttaatgcct gttgcataag ctattgctct accatgagta gtatgaactg
     1261 tattgcaatt tacataagaa ctcattctgc cactacaacc tatacccgaa acaagacaaa
     1321 catcatccat attccaacca agtttttcta tcgcgcggat aatacatttt aaaacaacac
     1381 catcgccaca tccccaacac cattgagtag gcattttatc tactcttaga tattcatcat
     1441 aattaaaagc catttatata ttctccttta ccttagcaat aatttcactt ggagtgatag
     1501 gacgaccatt tgcacggtgc aaactaataa aatcgcgacg cgaagttact ctttcaatct
     1561 cttcaagata ttgtcccata ttaagctcgc ttaccatgac ttttttaaat ttgcttacaa
     1621 cctcagcaat ttttttctca gccactggat aaagagtaat tggacggaaa agtcccactt
     1681 taatcccttg ctctcttaat ctttgtatag cttcttttgc tgaacgactc acgcttccat
     1741 aagcaatgat taaaaattca gcatcatcaa gcatatactc ctcataagta caaatatctt
     1801 cttgattgtt ttttatttta cctatgagtc tttccatatt ttttttcact ataactccat
     1861 cttcagttgg aaaacctata tctccatgat gaagtcctgt aacatgataa cgataacctg
     1921 taaagaaagg atttaaagtt gcaggctcat tttctcctgc tgcataaggt ttataatcct
     1981 ttttatcgcc ttcaaatttt ttacggttat atactttaat atcttttaaa tcaggtaaaa
     2041 ccgctttacc attcatgtgc cctacagttt catccataag taaaaatact ggagtcatat
     2101 atttttcagc taaattaaac gctctaatgg tttctgtata agcttcttca agacttgcag
     2161 gagcaatagc aatacttgca aaatccccat gagttggtgc tttagcttga aacaaatctc
     2221 cttgtgctac acgagttgga agacctgttg aaggaccacc tctcataaca tttacaatca
     2281 caagtggaat ttcagcaata aatgcaagtc ctatttgctc tgcttttaaa gaaattccag
     2341 gaccgctact tgcagtcatg gattttaccc cactcattgc cgcaccaata gccacgctaa
     2401 tacctgaaat ttcatcttcc atttgtataa aagttccatc atttgcagga agcatatggc
     2461 ttaattcatg agctatctca ctactaggag taataggata acctccaaaa aatttacatc
     2521 cacaatcaat cgcagctttg gcgattaaaa cattacctgt tgctataact tctctcatta
     2581 tttttcctat gctaattttt tgtatttgtt attttttacg gctacagctc tatctttagc
     2641 ctcagcagta agtttggcaa atttaaattc atctcttttt gccaccataa tagcaaaatc
     2701 agggcaatgt atctcacact cggtacagcc tatacaggat tcagggtgta ccacctctat
     2761 catttgtcct aaaaccgcat gcacatcatc gcgcatagct aaaaccccag cggggcaata
     2821 gctaacacaa atattacatg ctttacatct atgctcatct acccaaacag gggtatcttt
     2881 tggagctgtc atactcatgt ttttttcctt tattaaccta atattttttg aatttcttca
     2941 ccaattaaag ccggagaatc caccacatga attccatagc tttttaaagc ttctttttta
     3001 gctgcagcac tttcatcagc acttcctact atggcacctg catgccccat tcttttgcct
     3061 ttaggagcag ttgcacctgc aatgaatgct accacaggtt tgctaatatt ttctttaata
     3121 aatttagccg cttccacttc caaactacca ccaatttcac ctatcattac aatagcttta
     3181 gtttcatcat ctttttggaa ttcacttaaa agttctttat aagcaagacc tatgatagga
     3241 tcaccaccaa ttcctactgc agtagaaatt ccataaccac cttgaactac ctgattagca
     3301 gcttcataag ttaaagttcc actttttgaa ataagcccca cgcaaccttt tttaaaaata
     3361 aaacctggca taatacctaa cttacattct tcagaagtga taatacctgg acaatttggt
     3421 ccaatgattt tcataccctt tttattagca tattgcttag caaacatcat atcctttaca
     3481 ggcgtatgct cggtgattac aactgcaagc ttaatacccg catcagctgc ttcaatcacg
     3541 ctatcaccca cagcaaaagc agggacaaag atcaagctca catcagcctt tgttgcttta
     3601 accgcatctg caacggtatc aaaaactggt ttacctaaat gagtttgtcc gcctttatga
     3661 ggggtgacac ctccaactat atttgtacca taagccatgc attgctcagc gtgaaaagtt
     3721 gcttctttac ctgtaaaacc ttgaactatt acttttgtat ttttattaac caatatactc
     3781 attttccatc cttatcctac taaacttttt acaagctctg caccgttttt aagattggtt
     3841 gctgctttga tatttttaag atttgaatta tctaaaattg tctttgcttc tgctgcgtta
     3901 gtgccatcaa gacgcactac aattggaata tttacctcaa cattcttagt agcttctaaa
     3961 attccatttg ctatcctatc acaacgaaca ataccaccaa agatattgat aaatataact
     4021 tttacatttt tatctcttaa aataatttca aaagcctttg caacagtttc tggagaagct
     4081 cccccaccta catctaagaa atttgcaggt tttgcaccac tataattaat aatatccata
     4141 gttgccattg ctagacccgc accatttacc atacaagcta catctccatc taatttcaca
     4201 tagcttaagc caaattcagc cgcttctctt tcagcaggat tttcttcagt agtatctcta
     4261 agttcagcaa tttcaggatg acgataaagc gcactatcat caaaactgca ttttgcatca
     4321 agggcataaa aatccccttc tgcagtttta attaaaggat taatttcaag catattcata
     4381 tctttatcca tgtaaagctt ataaagttta gctatcatag aaatgagttt tttgccttca
     4441 tctttatcaa gtcccaaaac tctcgctact tcaagtccat gaaacatttt aaatccaatt
     4501 tgtggatcaa tacctacttt tgcaattttt tcaggacttt ctttggctac tttttctata
     4561 tccatccctc cttcacttga agcgataatg gtaatttgct ctgccattct attaaacaaa
     4621 atagccaaat aatactcttt tactatatta gcaccacttt ctatataaag tttttgcaca
     4681 agtttgcctt caggtcctgt ttgatgagtt actaaattca ttcctaaaat tttacttgca
     4741 taatctttta cctcatctaa attcttagcg attttaacac caccaccaag accacggcct
     4801 cctgcgtgaa tttgagcttt aactgcccaa acactaccgc ctaattcttt agcattagcc
     4861 acagcttcat ctacgctaaa tgcaactttt ccctttaagg tagggatacc attgtctgca
     4921 aaaattgctt ttgcttgata ctcatgtatg ttcatttatt ctcctttata ttgatatttg
     4981 attaaagatt tttctaattt gtctttttct tgcaaactaa gatccatttt catgatttca
     5041 atcacacctt caagtcctaa tcttgccata actcccaagg ctttgttttg cactccaaat
     5101 tccccatgta aaatcacact cataggtaaa aactcgccac ttcttataga ctcaagcatt
     5161 cttatacaag cactagcagg ggctaaataa gctgaagttt taagatgttt gattacttta
     5221 gctccgcctg ttttaacttc attttctaaa tcctcaaatt cttcttcatt taaaaattcg
     5281 cttatatttt tatttttaac acttgcgtaa gattttacca aaaccatatc atcattatga
     5341 aaaccaataa gtcttgtatc cactcttgac attttgacat taagtttttt ggcaagttca
     5401 tacttaaatc ttgcattgtc taaaacaccc gccatggcta taattttctt tgatgaaaaa
     5461 atcccgcttt cataaagagt attaagtaga aaatccacag gattagttaa aataataaaa
     5521 agcggatctt ctgtaaaatc tttaattttt ttagcacaat caagcataat gcttgtattt
     5581 aactgaagca attcttctct actttgccca tcttttctag caaaacctgc actaaaaagc
     5641 actatatctg aatttttggt atgagtataa tctttagtgc aaagtaaatc tatatttaaa
     5701 tttaaagcag ctatgctttg agtaagctct agttcttttg cgtaaagcaa atcctcgtta
     5761 atatctacta aaacaatttc atttgctatt tctcttaaaa tcaaagcata agctacgctt
     5821 gaacctacat tgccagcccc tataacagtg attttcatct ttgtcctatt ttttctaaaa
     5881 tagcgttaaa agttgcactt ggacgcatga ttttatttgc tttttcatca tcaaatttat
     5941 aatacccacc caaatccact ttcacacctt gtgcatcgtt aaattcggct ctgatttttt
     6001 cttcattaga agaaagctct agggcaatat ctttaaaaaa gctttgaagc tccatatcac
     6061 ttgcctgtct tgctaaatga tttgcaaaat acattgctaa ataaaaatga cttgttctat
     6121 tatcatcttc tttgactttt cttgatggag ctttattatt ttcaagccat tcgcctatag
     6181 cctcatcaag acattctgct aaaaccttag ctttatgatt gccacactta tttgcataaa
     6241 attccaaact tgcttgcaaa gccaaaaatt cacccaaact atcccaacgc agatgatttt
     6301 cttcgactaa ttgttctact tgtttaggtg ctgaaccccc tgctcctgtt tcaaacatag
     6361 ctccaccatt taacataggc acaacagaaa gcatttttgc acttgttcca agctctaaaa
     6421 taggaaaaag atcggttaaa taatccctta aaacattacc cgtgatagaa ataacatctt
     6481 taccttctcg gattaactct aaacttctta aacaagcttc ttttggagtt aaaatggcta
     6541 catttttacc cttttctttt aaacgatttt gtaccaaagt tatcatgatt ttattactag
     6601 ctcttttgct atctaaccaa aaaatagctt cggctccact aagttctgat ctttctatac
     6661 ctaaatcaat ccaatttaac actgcatcaa atttagcctg attagctcta taaatatcac
     6721 cttttctaac cttatgttct aataaaactt taccgttaga aactatttta aaagttcctt
     6781 cttctttagc cacaaaggtt ttatcgtgcg atccatattc ttgagctttt ttagccatta
     6841 aacctacatt agatacactg ccaagttttg aaggatttaa agtaccattt ttatgcaaat
     6901 cttcaataac cgcctcataa atagttgcgt aagtttgatc aggaattacg gcatttgtgt
     6961 ccttttcctt accttcctta tcccacaatc ttgcgccatt tttaagcatt gcaggcatag
     7021 aagcatcaac gataacatcg cttggaacat gaagatttgt aatgccttta tctgaattta
     7081 ccatagaaat atctgcagat ttagctaaaa tttcattgta tttttttaaa atttcatctt
     7141 ttttgcttga attttcgatc ttacttaaaa gctcacttaa accattattt ggattaatgc
     7201 ctaatttttc aaattcatct tgaaattcga taaataattc tttaaaaaat acttttaccg
     7261 cataaccaaa aagtatagga tcacttactt tcatcattgt agcttttaaa tgcaaagaaa
     7321 aaagcacatc atcatctttg cttgctttaa tttcttttgt ataaaattcc tgaagttttt
     7381 gcacatccat aaaagtagcg tctaaaattt catttttttc aagttttaag ccctctttta
     7441 aaatttcttt tttaccatca acgcttgtaa attctatatt agccacacaa tcttgatcga
     7501 ttaaaaccgc tttttcatta gagaaaaaat ccccttcttt catgtaagaa acacgagttt
     7561 ttgagtttgg attaaactca accacacgat aaggattgtt ttttgcataa tcttttaccg
     7621 cttttgttga acgacgatct gaatttcctt gtcttaatac aggattaact gctgaaccta
     7681 aaactttttg atattttgtt ttaatttgca attcttcatc attttttggc tcatctgggt
     7741 aatttggtaa catataaccc ttatcttgca attctttaat cgccgcctta agctgaggaa
     7801 tagaagctga aatatttggg gttttaataa gatttgcatc cgatcttttg acaagctcac
     7861 ctaaaagttc taaagcatct tcacatcttt gttcctcttt taaatactca ctaaaagtag
     7921 ctaaaatcct tccagacaaa gaaatatccg aggtttttac tcctatatgt gccctactta
     7981 aaaaagcttt cactataggc aaaaacgaat aagtcgcaag agctggagac tcatctgtta
     8041 aggtataagt aatttgcatt tttagtcctt taaaatactt atttttattt tcatttttaa
     8101 gtatattaca aataaaaaaa aatgcaagag taagtttaaa gtttgtttta gttttcaaac
     8161 aaactttaaa tatttttaat taagtaaatt agcaggaagt tgtatgatat ttttaataag
     8221 attaaaaggg gtttttaggg tatctgttaa aatttcggta tgaaatttag ggtcatctat
     8281 acttccatct atttttaagt ttgtgctaat ttcttgattt ttacctaaaa ttacataatt
     8341 taaaattgga accttggata tagcttctga agctgatttt aaagttttaa gctctaaact
     8401 aaaatccact gtatttaatc ttaaatttgc tgatcctaaa ccatatatat ctacactatc
     8461 gccatttaaa ttaatagctg aaacacttaa aagatctttt tttctattaa aaataatctt
     8521 tccatcatgt aagcttaaac ctttttgatt aaaagttgga gatttaaaca tcaataaact
     8581 tggtacagta tcgatgaagg aaataagctg atttatacct cttaaatcct tcacataagt
     8641 atttttaaaa tcgatctgtc catcaaaata ctccaatcca cttcctttta tacttaagtt
     8701 aaacactcca tcttgaacag cttgtttttg taaaaactca tttaaataat tatcatcaat
     8761 attgctaacg tttaaattta aatcattaga agaataataa agatcaaatt ttgcatttcc
     8821 tctagaacct ttaagatcta aagcattgcc ttttaaatca gcttctactc tatcaaaagc
     8881 caaagtttta ttagaatctg ccaaaattaa agctacattt gctccaccaa aactaatatt
     8941 ttgggtatta gtagcaatat caaatgttga atttgaagag ttggaatgtt ttctataaat
     9001 ataacttaaa ttttttaaat gaatttcttt attatcagaa cttattttag cacttgctgt
     9061 atcactttga gtatgaattt ccataatgcc cttatttttt acaa
//
LOCUS       DAPIWQ010000062         8793 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.062, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000062 DAPIWQ010000000
VERSION     DAPIWQ010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8793
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.062"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            5..640
                     /gene="flgA"
                     /locus_tag="RJ267_001020"
     CDS             5..640
                     /gene="flgA"
                     /locus_tag="RJ267_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HDV7388886.1"
                     /translation="MVINYIQAASLEEIKTALAKEFRNNFPKIIISQIDLKITSLPKD
                     FDQYEFLRIANGRFNQAQGFLRAEFKTPQNIQKNVFFRYFIQANLEVLKSERAIKRGD
                     KLGAFDYKSVLIDFDKVPLNALTLDDVDNLVAKSNINKNAILRANMFKTTALIRRNDP
                     IIGVLSEANVDVLIELVALQSANMGERIRAKNKEGKVMQGIVVGKNRMIIQ"
     gene            637..1200
                     /locus_tag="RJ267_001021"
     CDS             637..1200
                     /locus_tag="RJ267_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HDV7388887.1"
                     /translation="MKVLLGISGSSSVNLGLKLLKNLENQCELYCILTQGAKLNFKTE
                     NQANLEEICQENFKYTHFLDDKNLSLSVASGSFGIEKTIIAPCSISSLAKIHAGFADT
                     LLMRAAAVALKERKKLILGVREMPFSTLNLEHMLKLSQMGVIIAPPIIASYSKANNLE
                     QMENFIAGKWLDLLEIKHNLYEKWQNF"
     gene            1240..1716
                     /gene="coaD"
                     /locus_tag="RJ267_001022"
     CDS             1240..1716
                     /gene="coaD"
                     /locus_tag="RJ267_001022"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HDV7388888.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDEVIVAIAKSEHKKPCY
                     DLEKRKELALLATQNLKNVKIIAFDNLLVDLAKELKVNTIIRGLRAVSDFEYELQIGY
                     ANHALWEDMETIYLMPSLKHAFISSSIVRSIVAHGGDVSSLVPKEILPFLKDQSCM"
     gene            1707..2285
                     /locus_tag="RJ267_001023"
     CDS             1707..2285
                     /locus_tag="RJ267_001023"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HDV7388889.1"
                     /translation="MYVVFEGIDCVGKSTQISLLKEIYKDAIFTLEPGGTELGKHLRE
                     ILLNKTHPINKRAELLLFLADRAQHFEEILKTNQNKLIISDRSFISGMAYAKDFENDL
                     LFALNSFALENFFPQKIIFLKGDANLIQERLSQKELDSIEKRGIEYFLSVQDKLEKVL
                     HFLKEKISVEILTLDAKESKEKLHQQIKEFLQ"
     gene            2282..3508
                     /locus_tag="RJ267_001024"
     CDS             2282..3508
                     /locus_tag="RJ267_001024"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HDV7388890.1"
                     /translation="MINALKGMKDLLDKDAYYYEKVIKICEEVAKNYGFTFINTPHLE
                     LCTLFKRSVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEKKLDKNTSVKR
                     WFYYGSMFRYERPQKGRLREFHQFGVESLGIPNVYEDASIILMLVEIFSRLGIDFKLQ
                     LNSLGCSQCLPKYRDRLVEFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQNLLENAP
                     LLINNLCTSCQKDFETLQQILKDNGVKFELDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLGGKSGYGIGFAMGIERIITILEQKEEKIQREGIYLCAMDEIYIQ
                     KLLHIATNLRKEYKVLLSYEARKLAKHLENADKNNTEIFLCMGENEAQNESLFYKNLA
                     KKEEKMIKISDLKKVL"
     gene            3505..5340
                     /gene="speA"
                     /locus_tag="RJ267_001025"
     CDS             3505..5340
                     /gene="speA"
                     /locus_tag="RJ267_001025"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HDV7388891.1"
                     /translation="MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK
                     DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIA
                     PVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSM
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYD
                     IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV"
     gene            5341..5979
                     /gene="cysE"
                     /locus_tag="RJ267_001026"
     CDS             5341..5979
                     /gene="cysE"
                     /locus_tag="RJ267_001026"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HDV7388892.1"
                     /translation="MNFWGIIKEDFSQPKAQDPAFNSCIELFFNYPGVWAVVNYRFAH
                     FFYIRNFKRIARMISGISQFLTGVDLHPGAELGRRIFIDHANGVVIGQTAIIEDDVLI
                     YQGVTLGGTSLEKGTKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDIGAN
                     LTAVGIPAYIIEERKNKNIRAIDANCDDKLEKLEKKILELENLILKQPESQK"
     gene            6151..7320
                     /locus_tag="RJ267_001027"
     CDS             6151..7320
                     /locus_tag="RJ267_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HDV7388893.1"
                     /translation="MLTKRSQVLEESITLAITALANELKAKGEDIISFSAGEPDFDTP
                     QTIKNAAISAIEKGCGKYTAVAGIPEVLKAIQTKFKKDNNLDYETNEIITNVGAKHSL
                     FECIECLVEKDDEVIIPSPYWVSYPEMVKFAGGKPVFIEGLEENGFKITAEQLKKAIT
                     AKTKVLMLNSPSNPVGSIYSKEELTQIAKVLEGTQITVLSDEMYEKLRYDGFDFVAFA
                     SVSKDALKRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGECDKDIEKMRQAFEKRRNLALDILKQIPNISVYKPEGAFYLFVNIQKIEK
                     DSMKFCQKLLEQEKVAVVPGVGFGMDGYFRLSYATSDELIKKGLERIANFIKNYK"
     gene            complement(7370..7711)
                     /locus_tag="RJ267_001028"
     CDS             complement(7370..7711)
                     /locus_tag="RJ267_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HDV7388894.1"
                     /translation="MKIIQWNGAEFSPKEVKINVLIDNEKGKEIQILLAKDSVMKEHK
                     APFAIHVQVLSGKIWFEVEKEKFELNALDMISLEANVAHSLGGLENSIIRLSLNKSDS
                     VQRVNAVLKKP"
     gene            complement(7781..8743)
                     /locus_tag="RJ267_001029"
     CDS             complement(7781..8743)
                     /locus_tag="RJ267_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDV7388895.1"
                     /translation="MQGKKYEIFLNENEHSLITPKVSFKEILRYYYLYPKNAIPSFKL
                     PFFKPDLSGFSTPHITWLGHSSLFISFKEYKILIDPIFNTHASPISFINKAFKNAPVY
                     NINDFNEIFAVIITHSHFDHLDAKSVKALKDKAKFFITPLKVGNYLKSYGVSEKKIIE
                     LDWWSGIEFGDLKIMATPAQHSSSRGDGKNKTLWASFVMEFLSVDKRVFFSADGGYFT
                     HFKKIGEYFGSFDLACLESGQFNIAWPYSHSFPEQILKEAKDLNAKAVMPIHWGRFLA
                     GTHAWNEVVKFLYENLDLPLITPKMGEAYEVGAKFKQDFWWKEE"
BASE COUNT         3236 a         1322 c         1457 g         2778 t
ORIGIN      
        1 ttttattgtg ataaattata tccaagcagc tagtttagaa gaaatcaaaa cagcactagc
       61 taaagaattt agaaataatt ttcctaaaat tataatttct caaattgatt taaaaataac
      121 atcattgcct aaagattttg atcaatatga atttctaaga atcgctaatg ggcgttttaa
      181 tcaagcacaa ggctttttaa gggctgaatt taaaactccg caaaatatac aaaaaaatgt
      241 attttttaga tatttcattc aagcaaattt agaagtttta aaaagcgaac gcgctataaa
      301 aagaggagat aaacttggag cttttgacta taaaagcgta ttgattgatt ttgataaagt
      361 tcctttaaat gccttaacct tagatgatgt agataatctt gtagctaaaa gcaatattaa
      421 caaaaacgcc attttaagag caaatatgtt taaaaccaca gctttaatac gccgaaatga
      481 tcctataatc ggggttttaa gcgaagcaaa tgttgatgtt ttaatcgaac ttgtggcttt
      541 gcaaagtgca aatatgggcg aaaggattcg tgcaaaaaac aaagaaggta aagttatgca
      601 aggtatcgta gtgggtaaaa ataggatgat tatacaatga aagttttatt gggaatttct
      661 ggttcaagca gtgtcaattt aggcttaaaa ttattaaaaa atttagaaaa tcaatgcgaa
      721 ctttattgta ttttaaccca aggtgcaaaa cttaacttca aaactgaaaa tcaagcaaat
      781 ttagaagaaa tttgtcaaga aaattttaaa tacactcatt ttttagatga taaaaattta
      841 agtctaagtg tagcaagtgg atcttttgga atagaaaaaa ccatcattgc tccttgttca
      901 atttcaagtt tagcaaaaat tcacgctggt tttgcagaca ctcttttaat gcgtgctgca
      961 gcagtagccc taaaagaaag aaaaaaactc atcttagggg tacgtgaaat gcctttttct
     1021 actttaaatt tagaacatat gttaaaactt agccaaatgg gagttatcat cgcccctcct
     1081 attatcgcaa gctattctaa agcaaacaat ctagagcaaa tggaaaattt tatcgcaggt
     1141 aaatggttag atcttttaga aataaaacac aatttatatg aaaaatggca aaatttttag
     1201 tttaaatttg ttatattttt aaaaaaaatt ggagcaaaaa tgacttgttt atatcctggg
     1261 acttttgatc ctattaccaa cgggcattta gatgttataa aacgggcttt aaaaattttt
     1321 gatgaagtca tcgttgccat agcaaaaagt gaacataaaa aaccttgcta tgatttagaa
     1381 aaacgcaaag aactagccct gctcgcaaca caaaatttaa aaaatgttaa aatcattgct
     1441 tttgataatt tacttgtaga tttagccaaa gaattaaaag ttaatactat aatccgtgga
     1501 cttagagcag tgagtgattt tgaatacgaa ttgcaaattg gctatgcaaa tcacgcactt
     1561 tgggaagata tggaaaccat ttatcttatg ccaagtctaa aacatgcttt tatttcaagt
     1621 tctattgtgc gttctatagt agcacatggg ggtgatgtaa gttctcttgt tccaaaagaa
     1681 attctacctt ttttaaagga tcaatcttgt atgtagtttt tgaaggtatt gactgcgtag
     1741 gaaaaagtac gcaaatttca cttttaaaag aaatttataa agacgccatt ttcacactcg
     1801 aacctggcgg aacagaactt ggaaaacatt taagagaaat tttacttaat aaaactcatc
     1861 ctattaacaa aagagctgaa ctcttgcttt ttttagctga tcgtgctcaa cattttgaag
     1921 aaatcttaaa aaccaatcaa aacaaactca ttattagcga tagaagtttt atttcaggca
     1981 tggcttatgc caaagatttt gaaaacgatt tgctttttgc tttaaatagt tttgctttag
     2041 aaaatttttt tccacaaaaa attatctttt taaaaggaga tgcaaacctt atccaagaac
     2101 gcctcagtca aaaagaacta gatagtatag aaaaacgtgg cattgagtat tttttaagcg
     2161 tgcaagataa actcgaaaaa gtgcttcatt ttttaaaaga aaaaatttct gtagaaattt
     2221 taacacttga cgcaaaagaa agtaaagaaa aattacacca acaaataaag gaatttttac
     2281 aatgattaac gctttaaaag gaatgaaaga tttattagat aaagatgcat attattatga
     2341 aaaagtgatt aaaatctgcg aagaagtagc taaaaactat ggctttactt ttatcaatac
     2401 accgcattta gaactttgca ccctttttaa aagaagcgta ggagaaagtt ctgatatagt
     2461 aggtaaagaa atgtatgaat ttatcgataa aggcgaaaat catgtttgca tgcgtcctga
     2521 aggaactgct ggggtggtgc gtgcctatat agaaaaaaaa ctcgataaaa acactagtgt
     2581 gaaaagatgg ttttattatg gttctatgtt tcgttatgaa agacctcaaa agggtcgctt
     2641 aagagaattt catcaatttg gagttgaaag ccttggcata cctaatgttt atgaagatgc
     2701 aagcattatt ttaatgctag tagaaatttt ctcacgcctt ggtattgatt ttaaacttca
     2761 acttaattct ttaggctgct cacaatgctt gccaaaatac cgcgataggc tcgttgaatt
     2821 cttagattcc aaagaaggtt tttgtgaaga ttgtttgcgt agaaaaaatt taaatcctat
     2881 tcgtgtctta gattgtaaaa atgagcattg tcaaaatttg cttgaaaatg ctccgctttt
     2941 gatcaataat ttatgcacct cttgccaaaa agactttgaa acactgcaac aaattttaaa
     3001 ggataatgga gttaaatttg agttagattc aaaacttgtg aggggtttgg attattattc
     3061 taaaacggct tttgaattta taagcgatga aataggagca aaggctgcta tcgcaggtgg
     3121 aggacgctac gatagactta tagagtattt aggtggaaaa agtggctatg gtataggttt
     3181 tgccatgggt atagaaagaa ttataactat tttagaacaa aaagaagaaa agattcaaag
     3241 agaaggaatt tatctttgtg ctatggatga aatttatatc caaaaacttt tgcatatcgc
     3301 tacaaattta agaaaagaat ataaagtact tttaagctat gaagcaagaa aactagccaa
     3361 acatcttgaa aacgcggata aaaataatac tgaaattttt ctttgcatgg gagaaaatga
     3421 agcacaaaat gaaagtttgt tttataaaaa tttagcaaaa aaagaagaaa aaatgattaa
     3481 aatttcagac ttaaagaagg ttttatgatg gattatggta ttgatatttg gggaaatgaa
     3541 aatttcatta tcaaaaatgg taaagtttgt atcaattacg agaaaaaacc tgctattatt
     3601 gatatagtta aagaattaag agatgatgga tacaaggggc ctttactttt aagatttcct
     3661 catcttatcc aaaaacaaat tgaaaatatt tacggaaatt tcaataaagc aagaaaggaa
     3721 tttggctata aaggaggatt taacgctgtt tatcctttaa aggtcaatca ataccctggt
     3781 tttgtaaaaa atcttgtaaa acttggaaaa gactataact atggacttga agcaggttct
     3841 aaggcagagc ttttactcgc tatggcttat aataacgaag gcgcacctat taccgtaaat
     3901 ggctttaaag atagagaact tatcaacata ggctttattg cagctgaaat gggacataat
     3961 atcactttaa ccatagaagg acttaatgaa cttgaagcta tcatagacat agctaaagaa
     4021 cgctttaaac ctaaaccaaa tataggctta cgtgtacgtt tgcattctgc tggagttgga
     4081 atttgggcaa aaagcggtgg gattaattct aaatttggac ttacatccac tgaactcata
     4141 gaagcggtaa atttactcaa agaaaacaaa cttttagaac aatttaccat gattcacttt
     4201 catctaggct cacaaattac cgaaattcac cccttgaaaa aagccttaaa tgaagcagga
     4261 aatatctata cagaacttag aaaaatggga gctaaaaatc taaaagctat taatcttggt
     4321 ggcggtttag ctgtggaata ctcacaattt aaaaatgaaa aaagtagaaa ttacacccta
     4381 agagaatacg ctaacgatgt agtttttatc ctaaaaaaca tagccgaaca aaaaaaagat
     4441 ttagagcctg atattttcat agaaagtgga cgttttgtag cagctaatca cgctgtttta
     4501 atcgctcctg tattagaact tttttctcaa gaatacgcag aaaacaaact catacttaaa
     4561 aaacaaaatc caaaacttat cgatgagctt tatgatcttt ataaaagtat aaaaccttcc
     4621 aatgctttag aatacttgca cgatagcata gatcatttag agagtatttt aactcttttt
     4681 gatttgggct atgtggattt acaagatcgt tccaatgctg aaattttaac tcatttgatt
     4741 acaaaaaaag ccatcttgct tttaggcgat aagcaaaatc ctgcggattt acttgccata
     4801 caagatgaag tgcaagaaag gtatttggta aatttttcgc tctttcaaag catgcctgat
     4861 ttttggggtt tagaacagaa tttccccatc atgccacttg atcgcttaga tgaagaaccg
     4921 acacgaagtg caagtatttg ggatataacc tgcgatagcg atggagaaat ttcatactct
     4981 aaagataaac ctttattttt gcacgatgta gatgtagaaa aagaaaatta ttttctaggg
     5041 ttttttcttg taggtgccta tcaagaagta cttggaatga aacacaatct ttttactcat
     5101 cctactgaag ctattataag catcaatgaa aaaggctatg aagtcgaggg gattatagaa
     5161 gcgcaatcca tacttgatac cttagaagat ttagactatg atatacacgc tatcatggat
     5221 atacttaatg aacgcataag taattctaag cttgtaaatg ataagcaaaa aaagcatatt
     5281 ttaggcgaac tttatctttt cttaaatgat aatggttatt taaaaagcat aggagtttag
     5341 atgaattttt ggggtattat aaaagaagat ttttctcagc caaaggcaca agatccagct
     5401 tttaattctt gtatagaact tttttttaat taccctggag tatgggctgt agtaaattac
     5461 cgctttgcac atttttttta cataagaaat tttaaacgca ttgctagaat gattagcgga
     5521 atttcacaat tcttaactgg ggtagatttg caccctggag cagaacttgg aaggcgtatt
     5581 tttatagatc atgccaatgg agtggttata ggtcaaacag caattataga agatgatgtt
     5641 ttaatttatc aaggcgttac tttaggtgga acaagccttg aaaaaggtac taaacgccat
     5701 ccaaccataa aaaaaggagt gatcataggc tcaggcgcaa aagtgcttgg caatatcacc
     5761 ataggagaaa atgccaaaat aggctcaaat gctgtagtgg ttaaagatat aggtgcaaat
     5821 ttaactgccg ttggaattcc tgcttatatt atcgaagagc gtaaaaataa aaacattaga
     5881 gccatagatg caaattgcga tgacaaacta gaaaagttag aaaagaaaat tttagaactt
     5941 gaaaatctta tattaaaaca acctgaatca caaaaataat aattttttat aatacataaa
     6001 attatatgta ttattatgcg tattaatttt tcctaaaaat taatacaaat tttcacattt
     6061 attgaaattt acaactcatt tttaaattaa atttattgta aaaatgcaat tttctgctaa
     6121 aattaaacaa aaattatcaa ggattgaaaa atgcttacaa aaagatctca agttttagaa
     6181 gaatctatca ctttagctat cactgcactt gccaatgaac ttaaagccaa aggcgaggat
     6241 atcattagtt tttcagcggg tgaacctgat tttgacacac cacaaaccat caaaaatgcc
     6301 gctataagtg ctattgaaaa aggatgtgga aaatacactg ctgttgcagg aattcctgaa
     6361 gtattaaaag ctattcaaac caaatttaaa aaagataata atcttgatta tgaaacaaat
     6421 gaaatcatca ccaatgtagg cgcaaaacac tctctttttg aatgtataga atgcttagta
     6481 gaaaaagatg atgaagtgat tatccctagt ccttactggg taagctatcc tgaaatggta
     6541 aaatttgcag gtggaaaacc tgtatttata gaaggcttag aagaaaatgg ctttaaaatt
     6601 accgctgaac aattaaaaaa agctatcaca gctaaaacca aagttttgat gctaaattct
     6661 ccttcaaatc ctgtgggatc gatttattct aaagaagaat taactcaaat tgctaaagtt
     6721 ttagaaggaa cgcaaattac tgttttaagt gatgaaatgt atgaaaaact tcgctatgat
     6781 ggttttgatt ttgtagcttt tgcaagtgta agcaaagatg ctttaaaacg cactgtgacc
     6841 attaacggac ttagcaaatg tggagctatg ccaggatggc gttttggcta tatggcaagc
     6901 aaaaataaag ccctaatttc agccgttaaa agacttcaag gacaaagcac ttcaaatatt
     6961 tgctctatca ctcaacatgc agccattcct gctttaaatg gagaatgtga taaagatata
     7021 gaaaaaatgc gtcaagcctt tgaaaaacgc cgtaacttag ccttagacat acttaaacaa
     7081 atcccaaata tcagtgttta taaaccagaa ggtgcttttt atctttttgt aaatatacaa
     7141 aaaatagaaa aagattctat gaaattttgt caaaagttac ttgaacaaga aaaagttgcc
     7201 gttgttccag gtgtaggttt tggaatggat ggatacttca gactttctta tgctacaagc
     7261 gatgagctta tcaaaaaagg tttagaaaga atagcaaatt tcattaaaaa ctataaataa
     7321 ttctaggtta aagcctagaa ttatttaggc aaattaaaac cttataaaat caaggctttt
     7381 taagcacagc atttaccctt tgaacactat ctgatttatt taaactcaat cttattatag
     7441 aattttctaa tccacctaaa gaatgtgcta catttgcctc taggcttatc atatctaaag
     7501 catttaattc aaatttttcc ttttccactt caaaccaaat tttaccgctt aaaacttgaa
     7561 catgtatagc aaaaggagct ttatgctctt tcatcacact gtctttagct aataaaattt
     7621 gaatttcttt acctttttca ttgtcaatta aaacattgat tttcacttct tttgggctaa
     7681 attccgctcc attccattga atgattttca caaaatctcc ttttttagtt ttacaaaact
     7741 atagcaaaag ccaaaatata aattataaac ttgtgttaat ttattcttct ttccaccaaa
     7801 aatcctgttt aaatttagct cctacttcat aagcctcgcc catttttggt gtgataaggg
     7861 gtaaatctaa attttcataa agaaatttta ccacctcatt ccatgcatga gttcctgcta
     7921 aaaatctccc ccaatgtata ggcatgacag cctttgcatt aagatctttt gcctctttta
     7981 aaatttgctc aggaaaagag tgtgaatatg gccaagcgat attaaattgt ccgctttcaa
     8041 gacaagctag gtcaaaactt ccaaaatact cacctatttt tttaaaatgt gtaaaatacc
     8101 ctccatctgc gctaaaaaac actctcttat ctacacttaa aaattccatc acaaaagaag
     8161 cccaaagggt tttgttttta ccatctcccc tacttgaact gtgctgtgca ggtgttgcca
     8221 tgatttttaa atcaccaaat tctattccac tccaccaatc aagctctatg atttttttct
     8281 cgctcacccc atagcttttt agataatttc ccacttttaa aggagtgata aaaaatttag
     8341 ccttatcttt taaagctttt acactcttag catctaaatg atcaaaatgc gaatgcgtga
     8401 taatcacagc aaaaatttca ttaaaatcat ttatattata aacaggagca tttttaaaag
     8461 ccttgttgat aaaagaaatg ggcgaagcat gagtgttaaa aataggatca atcaaaattt
     8521 tatactcttt aaaacttata aaaagcgaag aatggccaag ccaagtaata tgtggggtgc
     8581 taaaaccact caaatcaggc ttgaaaaaag gtaacttaaa agaagggatg gcattttttg
     8641 gataaagata ataatacctc aaaatttctt taaaagacac tttaggagtt ataagactgt
     8701 gctcattttc attaagaaaa atttcatatt ttttaccctg cactttttta gcttttgatc
     8761 gttgtgtatt ggaaatatca aagattttaa atg
//
LOCUS       DAPIWQ010000063         8751 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.063, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000063 DAPIWQ010000000
VERSION     DAPIWQ010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8751
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.063"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..546)
                     /locus_tag="RJ267_001030"
     CDS             complement(<1..546)
                     /locus_tag="RJ267_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388896.1"
                     /translation="MKILLLNENPVVSRLVSLSAKKMSYDFEELNAYSENLGNYDVIV
                     VDSDTPAPLKILKEKCDRLIFLAPRNQNVEDIDAQILQKPFLPTDFLNLLNNKDANKH
                     TSIDLPMLSNDENPYADISLDLDNLNLDDLPDENSLDINSEGMEDLSFDDDAQDDNSN
                     KTLETQNLEHDNLEQEAIKEQT"
     gene            complement(603..1370)
                     /gene="fliR"
                     /locus_tag="RJ267_001031"
     CDS             complement(603..1370)
                     /gene="fliR"
                     /locus_tag="RJ267_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HDV7388897.1"
                     /translation="MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKST
                     IVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGMIAGLMLQIIFVIIMMAGEQIAF
                     TMGFTMASILDPSSGTSMPITSQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
                     YPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKNLILELFTHMQTLFFF"
     gene            complement(1357..1992)
                     /locus_tag="RJ267_001032"
     CDS             complement(1357..1992)
                     /locus_tag="RJ267_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7388898.1"
                     /translation="MELLRAENLSHSFDYPLFEGLNLTLNTKDCIAIQGSSGCGKSTL
                     LHILSSLLIPKKGEVFFKGSSLYQIDENERLKIRRYDFGIIFQTHYLFKGFSALENIE
                     LASVLSGQDLDEKILKRLGIDTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLISYVKENDAALFFVTHDSKLASFCDKTYTINANGIC"
     gene            complement(2005..3078)
                     /locus_tag="RJ267_001033"
     CDS             complement(2005..3078)
                     /locus_tag="RJ267_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HDV7388899.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QSNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
                     NGRVGVVIAAACDSTEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIW
                     DNIIPGKMNSFIADNSQLDSKLTLMGQFYVMDDKKTVEQVIAEKEKEFGGKIKIVEFI
                     CFEVGEGLEKKTEDFAAEVAAQL"
     gene            complement(3078..3869)
                     /gene="rpsB"
                     /locus_tag="RJ267_001034"
     CDS             complement(3078..3869)
                     /gene="rpsB"
                     /locus_tag="RJ267_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HDV7388900.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTILFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALANEEKEITDEEKKEVLDEAMSEEDFGEEQE"
     gene            complement(3985..5148)
                     /locus_tag="RJ267_001035"
     CDS             complement(3985..5148)
                     /locus_tag="RJ267_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDV7388901.1"
                     /translation="MLEKQMIKFILSKWNYGNFRIVFWDQEEFHVGNQPAKFSLIFKE
                     KIPFLKLFSDTSLVFAKHYMESKLEIEGDYDEIAKVLYYFSNKRFLKNTEDILSKIAQ
                     KQESKNIKSHYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLK
                     EGEKLLDIGCGWGWLSIMAAQKYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQ
                     NYQDLEFENYFDKVVSVGMFEHVGKENLGLYFMKVKQVLKPGGSMLLHSILAMFEGKT
                     NAWIDKYIFPGGYLPSLREVVSAMSEWDFHLLLAESLRMHYAKTLDLWDENFNKVLDK
                     VREKYDEEFIRMWDLYLRSCASAFRVGSVDLFQFLITKEINNNLSLTKDYIYK"
     gene            complement(5276..6400)
                     /locus_tag="RJ267_001036"
     CDS             complement(5276..6400)
                     /locus_tag="RJ267_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDV7388902.1"
                     /translation="MREIKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDFAVED
                     TTFAKGIVEAKELALKDAQASGDAKRIESANKELEKAKEELSKVETLWADVAKIDFAK
                     GDAKKGKEFFENNCFACHGVKEDGIAANITDSSMGVIPPDLSAAGAIFDEKFLAALIM
                     HPALALKVDHKFGDAFIMTAYNKDTSGESEEATNANIANVIAYLKDVSVKFEANEDAT
                     IKKDVEAKYAKMENSAQKAALMEKDIKFAKDKATFIEACGRCHDMKYDSFFTPSNQND
                     LKTYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEAAQAKVVSYID
                     QVGDSKKEERKTTGIYVMIFFVILSIFAIGWKRSVWSKLH"
     gene            complement(6397..7647)
                     /locus_tag="RJ267_001037"
     CDS             complement(6397..7647)
                     /locus_tag="RJ267_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HDV7388903.1"
                     /translation="MAQIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFAVLFVTGLLLVMYYKPDTALAFDSVNKTIMQEVDYGWLWRHMHGVAASVVF
                     LIIYIHMLTGIYYGSYKKGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYISFFMIFFFYLVCFKF
                     EFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIASIKAFDIGLAAFGIAQ
                     VIFFLLPWLDRSDVVKPAHERPLFFIWFWILLIDLIVLTVYGKLPPTGVNAWVGFYAS
                     IVFLLLLIVVLPVITIMERKGAKQ"
     gene            complement(7649..8152)
                     /gene="petA"
                     /locus_tag="RJ267_001038"
     CDS             complement(7649..8152)
                     /gene="petA"
                     /locus_tag="RJ267_001038"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HDV7388904.1"
                     /translation="MATSESRRSFMGFAFGSVAAVGGVFSLVAMKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDASMPKDEKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYQPSEQLFKCACHGGEFDTSGKNVFGPPPKPLEIPPFKIDGTKLVLGEEGPEY
                     KKMIAEA"
     gene            complement(8243..>8751)
                     /locus_tag="RJ267_001039"
     CDS             complement(8243..>8751)
                     /locus_tag="RJ267_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HDV7388905.1"
                     /translation="LWAGIFWLIILKIQGKKSIKILFEAPYGVLLFSFGLYMVVFALH
                     KIGVSEILVKSYAFLMQDKSGIFGVALISAFGSSVFNNLPMVLIGDLALKEYFENFSF
                     DSLMIYAHLLGVNIGPKLTPIGSLATLLWLGVLARKGINISFWQYCKFGFLITLPVLV
                     FSLFALIV"
BASE COUNT         3043 a         1700 c         1068 g         2940 t
ORIGIN      
        1 agtctgttct ttaattgctt cttgttctaa attgtcatgt tctaaatttt gagtttctaa
       61 agttttgttt gaattatcat cttgagcatc atcatcaaaa ctcaaatctt ccattccctc
      121 tgaatttata tctaaagaat tttcatcagg caaatcatct aaatttaaat tatctaaatc
      181 caagcttata tcagcataag gattttcatc attgcttaac attggcaaat caatagatgt
      241 atgcttgttc gcatctttat tattaagtaa atttaaaaaa tctgtaggta aaaaaggttt
      301 ttgtaaaatt tgcgcatcta tatcttctac attttgattt cgcggggcta aaaaaatcaa
      361 tctatcgcat ttttctttaa gaatttttaa aggtgctgga gtatcactat ctacaacaat
      421 cacatcataa ttacccaaat tttcactata agcattaagt tcttcaaaat cataagacat
      481 ttttttagca ctaaggctta caagtcttga aactacaggg ttttcattta aaagtaaaat
      541 tttcatcact ttaatcctta aaaaataatc gctattttac gataatttca tttatccttt
      601 ccttagaaga aaaaaagagt ttgcatatga gtaaaaagtt ctaaaattaa atttttaaaa
      661 tattgcatca taactagtaa aatagcaatc aaaactacaa aacctagagc tatctttata
      721 ggatagccaa taactaaaag attaaattgt ggcattgttt tcatcaaaag tccaaaaata
      781 acatcggcta aaagtgaaat tccaagtata ggaaagctca tagtaaaacc tatgatgaaa
      841 atattaaaca tacccatatt taaataatgc attaaattct catgcggata aaatccacct
      901 aaactaatat aacccaaaga atgacttaaa aacaaaagca ttaaatgatg gccatcaaaa
      961 gcaagaaaaa acatcaaagc aagtaaattt aaaatttgag atgtgatagg catactcgtt
     1021 ccagaacttg gatctaatat acttgccata gtaaatccca tagtaaaagc aatctgctca
     1081 cctgccatca taataataac aaaaataatt tgaagcatta atcctgctat cattccaaaa
     1141 atcacttcac taataagctg taaaacaaaa aaactatcta aatgcaaaga ttctaatcta
     1201 gccaaaggat ataaatacat agtcaaaaat aaaactatag tactttttat caccatagga
     1261 atagaattat gtgaaaaaaa aggaaaaaaa actataagac cactcattct agcaagaagc
     1321 aacataaaag ttacaacatt tttatcacct aaataattaa caaattccat tggcgtttat
     1381 agtataagtt ttatcacaaa aacttgcaag cttgctatcg tgagttacaa aaaataaagc
     1441 tgcatcattt tctttaacat aggaaattaa aagttcgata acatttttag cattatcaaa
     1501 atccaaattt ccagttgctt catcagcaaa aataatcttt ggttttttac aaagcacacg
     1561 tgcgatactc acacgctgtt gttgtccgcc gctaagcttt cctatttttt gatgtaaaag
     1621 cgtatcaata cctaaccttt ttaaaatttt ctcatctaaa tcttgacctg ataaaacact
     1681 agcaagttcg atattttcta aagccgaaaa acctttaaaa agataatgtg tctgaaaaat
     1741 aataccaaaa tcataacggc gaatttttaa tctttcgttt tcatctatct gataaagact
     1801 agaaccttta aaaaaaactt cacctttttt tggaatcaat aaagaagaaa gtatatgcaa
     1861 aagagtagat ttaccacaac cgctactccc ttgaatagca atgcaatctt tggtatttaa
     1921 agtaagattt aaaccctcaa aaagcggata atcaaaacta tggcttaaat tttccgctct
     1981 taagagttcc atttttaacc gtttttaaag ttgtgcagca acttcagccg caaaatcttc
     2041 agttttcttt tctaaacctt cgccaacttc aaagcaaata aattcaacaa ttttaatttt
     2101 tccaccaaat tctttttctt tttcagcgat cacttgttct acagtttttt tatcatccat
     2161 tacataaaac tgacccatta aagtaagttt gctatcgagt tgagaattat cggctataaa
     2221 gctattcatt ttgcccggga taatattgtc ccaaattttt tcaggtttac cttgagcttt
     2281 aagttcttct ttgatttttt cttcagcttc ttttaaaatt gcatcactta attgtttgcg
     2341 acttgcaaat tgaggaattt tatgttcagg tttatttgga tctttaagtc tgcgtctttc
     2401 ttcattttct ttttcaagtt cagcaaccaa ggctttgtat tcattttcaa caaaagtcat
     2461 atccaaatct tcataactta aataacttgg tctcattgct gcaatatgca tacaaatttg
     2521 tcttaacaaa tctcttgatt ttgaagccac ttcagtgcta tcacaagctg cagcgatcac
     2581 aacgcccaca cggccatttg tatggatata accatttaca acgccgttag cacctgcttt
     2641 taaagttgca aatcttctta caactaggtt ttctcctata gttgcaattt gactttttaa
     2701 atattcttca aattttacac cattaatcgt acttgagtga agttcttcta cactttgcaa
     2761 gctattgctt tgaatatgag ctgtagtgtc ttttgttaaa gcaataaact gatcattttt
     2821 tgccacaaaa tctgtttcgg aattaatctc acttacagtt gcgcttgtaa aatcatcact
     2881 tacttttaca cttactaaac cttctgcagc aagtctatct gcttttttag cagccttacc
     2941 taaacctttt tctcttaaaa gttgtactgc tttatcaaaa tctccattag tttcactcaa
     3001 agcattttta caatccatca tccccgcgcc tgtactttcg cggagttctt ttaccattgc
     3061 agcagtaatt tcagccatta ttcttgctcc tcaccgaagt cttcttcgct catcgcttca
     3121 tctaaaactt cttttttctc ttcatcggtg atttcttttt cttcatttgc taaagcttcg
     3181 ccatcttgtt ctcttaaagc ttttccttca ttaatcgctt cagccatttc ttggcagaaa
     3241 agttgcactg aacgaattgc atcatcattt cctggaatag gataagttac caagtcagga
     3301 tcacagtttg tatctagtgg agctacaaca ggaattctta atctatttgc ttcttgaaca
     3361 gcaatttttt cttttactgt gtcaataaca aaaatcatat caggttgagt tttcatataa
     3421 cgaattccac ctaaataagc taataatttt tctttttttc ttgtaagcat taaagcttct
     3481 tttttagtta aaagtttaat acttccatct tcttccattt tttcaattac ttctaatttt
     3541 ctaattgatt ggcgaatggt accaaaattt gtcatcatac cgccaagcca tctatgattt
     3601 acataaggca taccgcattt ttcagcgtat tctttaatcg ctccacctgc ttgttttttt
     3661 gtcccgacaa aaagtatagt ttttccttcg gcagcagcgt cacgaacgat attataggta
     3721 tatctaaaat atcttaaagt tttttgtaaa tcaattacat aaataccttt tctctcgcca
     3781 aaaatgaatt ttttcatctt tggattccag cgtcttgttt ggtgtccaaa atgcacaccg
     3841 cattctaata aatctctcat actaaccatg agtttctcct tgtaaattta gctttattcc
     3901 tccacatccc ttaatttaca caagctaaaa aggattgatg cgtgtgaaat gaagctaata
     3961 ttttatcaaa tttaagttta gtttttactt atatatgtag tccttggtaa ggcttagatt
     4021 attattgatt tcttttgtga ttaaaaattg aaacaaatcc acgcttccaa cacgaaaagc
     4081 agaggcacaa gaacgaaggt ataaatccca cattcttata aattcttcat catatttttc
     4141 ccttaccttg tccaatactt tgttaaaatt ttcatcccat aaatctaaag tttttgcata
     4201 gtgcattctt aaactttctg ctaaaagaag atgaaaatcc cactcactca tagcacttac
     4261 aacctctctt aaagaaggta aatatcctcc tggaaaaata tatttatcta tccaagcatt
     4321 tgtttttcct tcaaacatgg ctaaaataga atgtaaaagc atagaacctc caggttttaa
     4381 cacttgtttt actttcatga aataaagtcc taaattctct ttgcctacat gttcaaacat
     4441 acccacagaa acaactttat caaaataatt ttcaaattct aaatcttgat aattttgaag
     4501 tcttatttct attttatctt caagaccaag ttcttttact ctttccttag cttttttaca
     4561 ctgctcctct gaaatagtaa ttccaacaac cttaactcca tacttttgag ccgccataat
     4621 agaaagccaa ccccagccac aacctatatc taaaagcttt tctccttctt ttaaatcaag
     4681 ttttttaaga gtatgttcta ttttgttaat ttgagcttca taaagagtat tattaggctc
     4741 tttaaaataa gcgcaagaat agctcatagt atcatcaagc caaagcttat aaaaatcatt
     4801 acctatatca taatgacttt tgatattttt actttcctgt ttttgggcta ttttactcaa
     4861 gatatcctct gtatttttta aaaaacgctt atttgaaaaa taatacaaaa ctttagctat
     4921 ttcatcataa tcaccttcta tttctagttt agactccata taatgttttg caaaaactaa
     4981 actcgtatca ctaaataatt ttaaaaaagg tattttttct ttgaaaatta aagaaaattt
     5041 agcaggctga ttacccacat gaaattcttc ttgatcccaa aatacaattc taaaatttcc
     5101 ataattccat tttgaaagaa taaatttaat catttgtttt tcaagcatga catactccaa
     5161 ctaataaaaa ttattatttg atagtatctc ttaattatgt ttaaaatttg ataaaattga
     5221 agaaaagata gaatttttgc cacagatata aaatagtggc aaaaatttta taatactaat
     5281 gtaatttaga ccaaacagaa cgcttccaac ctatagcaaa aatacttaaa attacaaaga
     5341 atatcattac ataaattcct gtagtttttc tttcttcttt tttgctatca cccacttgat
     5401 caatataaga tacaacctta gcctgtgcag cttctgttaa acctactctt ggcatagcgg
     5461 ttcctggaag aagtttttga gtattattaa taaaatcatg taaatattgc tcaccacgag
     5521 atcttatcat catagaaaga tcaggtggaa cagaacctaa ataagttttt aaatcatttt
     5581 gatttgatgg agtaaaaaag ctatcgtatt tcatatcatg acaacgtccg caagcctcaa
     5641 taaaagttgc tttatcttta gcaaatttta tatctttttc cattaaagct gctttttgag
     5701 cactattttc cattttagca tattttgcct caacatcttt cttaatagta gcatcttcat
     5761 tggcttcaaa tttaacactc acatctttaa gataagcaat tacattggct atatttgcat
     5821 ttgtagcttc ttcactttct cctgaagtat ctttattgta agctgtcata ataaaagcat
     5881 caccaaattt atgatctact tttaaagcaa gcgcaggatg cataatcaaa gctgctaaaa
     5941 atttttcatc aaaaatagca ccagctgcac tgagatcagg cggtattact cccatagaag
     6001 aatcagtaat attagctgct attccatctt cttttacacc atgacatgca aaacagttat
     6061 tttcaaaaaa ttctttacct ttttttgcat cacccttagc aaaatcgatc tttgcaacat
     6121 ctgcccaaag tgtttcaacc ttgcttaatt cttcttttgc tttttcaagt tctttgtttg
     6181 cactctctat tcttttagca tctcctgaag cttgtgcatc ttttagagct aattctttag
     6241 cttcaactat accttttgca aaagtagtat cttcaacagc aaaatcaaaa tttgcaggag
     6301 caacatgagg cttcatcact gaatgagcat aaggctctac cccccaatat acaagtgcag
     6361 taaaaactac tacaactaaa aatattttta tttctctcat tgtttagctc cttttctctc
     6421 cataatagta ataaccggta aaactacaat aagtaaaagt aaaaatacta tagaagcgta
     6481 aaatcctacc caagcattta cacctgttgg aggtaatttt ccataaacag ttaaaacaat
     6541 taaatcaata agcaatatcc aaaaccaaat gaaaaataaa ggtctttcat gagctggttt
     6601 taccacatca cttctatcaa gccaaggaag caagaagaaa atcacttgag caataccaaa
     6661 tgcagccaaa cctatatcaa aagctttaat acttgcaata tcaaagaaaa atcctcttaa
     6721 aacttcataa ctccataaga aataccactc aggataaata tgagctggtg ttttaagcgc
     6781 attagctgga tcaaaattaa ttggatccat tgcaaattca aatttaaaac agaccaaata
     6841 aaagaagaaa atcataaaaa agcttatata cataaaatct tttgataaaa atcctggcca
     6901 aaaaggaatc actttagaac cctttgtgtc acctgccatg tatttttcag cctctaaatc
     6961 aaagtcaagt tcttcagaaa tttcattatt aacatgagga attcttaaag aatagaagtg
     7021 aaatgctata atagcaatga taactatagg aagcaagcac acatgaagca taaaaaatct
     7081 tgttaaagtt ggatcagaaa ccgcataatc tccacgaatc caaatcacaa gctcagggcc
     7141 aataaatggt atccctccaa aaagattagt gattacttga gctgcccaat aactcatttg
     7201 tccccaagga agcatatacc cactaaaagc ttcagcagaa aatacaacaa acaaaagcat
     7261 accgctaacc caaatcatct cacgaccttt tttataagaa ccgtaataaa ttcctgttag
     7321 catatgtatg tatataatca aaaatacaac agaagcggca acaccatgca tgtgacgcca
     7381 aagccatcca tagtccacct cttgcataat agtcttattc acactatcaa aagcaagtgc
     7441 agtatctggt ttataataca tcacaagtaa aagtcctgta acaaaaagca ctgcaaaaag
     7501 agtggttaaa ataaccccca ttgcccaaag aaagttaatt tgctttggta tccaatactt
     7561 taccattaaa acatcaagca gtttatgtac cgcaagtctt tgatcaagcc aatctacaag
     7621 accattagct tttctaattt gtgccatctt aagcctccgc tatcattttt ttatattcag
     7681 gaccctcttc acctaaaaca agcttggttc catcaatttt aaaaggagga atttcaagag
     7741 gctttggagg aggtccaaag acattttttc cacttgtgtc aaattctcca ccatgacagg
     7801 cgcatttaaa caattgctca cttggttggt aagcaggtat acaacccaaa tgcgtacaaa
     7861 gtcctataac cacagtataa gctgcgttat ctaccacaac atcacgtttt tcatcttttg
     7921 gcatactcgc atcttttttt aatataaaaa taggcttttt acgccattct atagttctaa
     7981 gctccccatc ttgcattcct gataaatcta ctgtagtaaa acctgcagct ttaacacttg
     8041 gaagcggatc ccaagttttt ttcatcgcaa caagtgagaa aacaccgcct acagcagcta
     8101 cgcttccaaa tgcaaagccc ataaagcttc gtctactctc agatgtagcc ataacttgct
     8161 cctttcgatt ttatttttta accaagttaa aagtttatcg aaattaaaat aaattttttc
     8221 tttgtttaac aagttttgat atttagacaa taagagcaaa aagagaaaaa acaagcacag
     8281 gtaaagttat caaaaagcca aatttacaat attgccaaaa agaaatatta atgccttttc
     8341 tagccaaaac tccaagccaa agcaaagttg ctaaagaacc tattggcgta agttttggac
     8401 ctatatttac acctaaaaga tgtgcataaa tcatcaaaga atcaaaagaa aaattctcaa
     8461 aatattcttt taatgccaaa tctccgatta aaaccatagg caaattatta aacacagaag
     8521 atccaaaagc tgaaatcaag gccacaccaa aaattccact cttatcttgc atcaaaaaag
     8581 catagctttt aaccaaaatt tcactcacac ctattttatg taaagcaaaa accaccatat
     8641 aaagcccaaa actaaaaagc aaaactccat aaggtgcttc aaaaagaatt ttaatacttt
     8701 ttttaccttg aatttttaaa ataataagcc aaaaaattcc cgcccaaagc a
//
LOCUS       DAPIWQ010000064         8600 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.064, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000064 DAPIWQ010000000
VERSION     DAPIWQ010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8600)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8600)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8600
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.064"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            209..634
                     /gene="rplM"
                     /locus_tag="RJ267_001040"
     CDS             209..634
                     /gene="rplM"
                     /locus_tag="RJ267_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HDV7388906.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKRFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            637..1026
                     /gene="rpsI"
                     /locus_tag="RJ267_001041"
     CDS             637..1026
                     /gene="rpsI"
                     /locus_tag="RJ267_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HDV7388907.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            1151..2110
                     /gene="cadF"
                     /locus_tag="RJ267_001042"
     CDS             1151..2110
                     /gene="cadF"
                     /locus_tag="RJ267_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HDV7388908.1"
                     /translation="MKKIFLCLGLASVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGIRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYF
                     YGLAGGGYEDFSNAAYDNKSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWV
                     STLGISFGFGGKKEKAVEEVADTRATPQAKCPVEPREGALLDENGCEKTISLEGHFGF
                     DKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNIGSRAYNQKLSERRAKSVANEL
                     EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR"
     gene            2110..2751
                     /locus_tag="RJ267_001043"
     CDS             2110..2751
                     /locus_tag="RJ267_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDV7388909.1"
                     /translation="MNKTILFDLDGTLIDSTDAILNSFQGAFKALGLTSKNNEEIKNL
                     IGYPLEQMFRMLYPDKVNLSKEFVLAYREIYAQIYLEQTTLLPKAKEALELGSEIADL
                     GIVTTKGGKFTPILLDYLGVKKFFKTLITLEDVTNPKPSSEPIILALKGLNKTQENAY
                     MIGDTILDIQAAISANITPLALTCGYGNENELKAHSMVFLNAYEAVNYIARLN"
     gene            2844..6404
                     /gene="nifJ"
                     /locus_tag="RJ267_001044"
     CDS             2844..6404
                     /gene="nifJ"
                     /locus_tag="RJ267_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HDV7388910.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGSVHGSLQAGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLAA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLDREALLEFRNNALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNEYMQEISKITGREYKPFTYYGHKEPECVIVAM
                     GSVTQALEEVVDYLNAKGEKVGILKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDVKSAFYGRENAPVIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIIDDVTHTSLSTGEKISLGDESTIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLE
                     LKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKETTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRHRIEHIMNESMQEVPNALS
                     ALFKDWIANKDNGAMSVEIKDKMIPILEQNKNIKAVQDILELKQYLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYTHLIKAITAAEAYDGPSLVICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTLTGKEPDWDLYEQFLMNEVRYNSL
                     KKANPEHAAELFERNKKDAQRRYRQLKRIAMADYSNEVES"
     gene            6428..6745
                     /locus_tag="RJ267_001045"
     CDS             6428..6745
                     /locus_tag="RJ267_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HDV7388911.1"
                     /translation="MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRH
                     IKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKEIKFQYDNLEIAIQINKNDKINI
                     NIN"
     gene            6717..8135
                     /gene="mshL"
                     /locus_tag="RJ267_001046"
     CDS             6717..8135
                     /gene="mshL"
                     /locus_tag="RJ267_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HDV7388912.1"
                     /translation="MIRLILILINILFCHYLYALDCQKRLFDISINEKLSIQESLDEL
                     AKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFNFFIKEHDLSYDFDGKILRIS
                     GINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQN
                     IEKEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVI
                     IDVSILAVSLNESHSSGINWQNFNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNF
                     DSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGTTVSESY
                     NNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKL
                     SSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFII
                     TPSIVDSVNAPSLKDLGFKHYE"
     gene            8128..>8600
                     /locus_tag="RJ267_001047"
     CDS             8128..>8600
                     /locus_tag="RJ267_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7388913.1"
                     /translation="MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLA
                     KKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILDEVGMYDYAMLESIRIYSDSISF
                     VLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQ"
BASE COUNT         3090 a         1138 c         1596 g         2776 t
ORIGIN      
        1 aagataaaca taaagagcag gtaggaactt ataagatcgc cattagtgaa attttgcaaa
       61 aagataaagt gcgtgctttt atagtttatt gtttggaaaa tgaaattcaa attttggaaa
      121 tataatatta atttttactt aaattaagta aaaattaata ttatttttta tacaatcaca
      181 ttttaaattt ttggcaaagg taaaaattat gacaaagata acaaagccaa acgaagtaaa
      241 acgagaatgg attgttttag acgcagaagg caaacgcttt ggtcgtcttt taactgaagt
      301 agcaacaatt ttgagaggta aaaacaaacc ttgctttact ccaaatgttg attgtggtga
      361 ttatgtaatt atcatcaatg cttcaaaagc tgtatttaca ggtgctaata aagcagaaga
      421 taagctttat catagacatt caggatattt tggaagtgta aaaagcgaaa aatttggtga
      481 tttacttgaa aaaaatcctg caaaattata taaattagca gttagaggta tgcttcctaa
      541 aacaaatttg ggcagagcta tgcttaaaaa attaaaaatc tatgcgggta gtgagcaccc
      601 acacactgca caaattgcta aagaaggaaa ataatcatgg caacaacata cgcaacaggt
      661 aagagaaaaa ctgctatcgc aaaggtatgg gtaaaaccag gtagtggtaa aattagtgtt
      721 aatggtgttg atttaaacac ttggcttggt ggacacgagg cgattaagct taaagtggtt
      781 caacctttac ttgtgactaa acaagaaact tcaatggata ttaaagcaac tactttaggc
      841 gggggctata gtgctcaagc tgaagcttta agacatggaa tttcaagagc tttagcagct
      901 atggatgctg attttagagc cttattaaaa cctaaaggac ttcttactag agatagtaga
      961 actgttgagc gtaaaaaata tggacgccgc aaagcaagaa gaagcccaca attctctaaa
     1021 cgttaatatt tttggtggga ttttcccacc tttctacaat tttttataaa actcatcctt
     1081 ttttctatca tttatgttat aattgcaaaa tttaaatttt tattttataa cacaatgaaa
     1141 ggttttttct atgaaaaaaa tattcttatg tttaggtttg gcaagtgttt tatttggtgc
     1201 tgataacaat gtaaaatttg aaatcactcc aactttaaac tataattact ttgaaggtaa
     1261 tttagatatg gataatcgtt atgcaccagg gattagactt ggttatcatt ttgacgattt
     1321 ttggcttgat caattagaat ttgggttaga gcattattct gatgttaaat atacaaatac
     1381 aaataaaact acagatatta caagaactta tttgagtgct attaaaggta ttgatgtagg
     1441 tgagaaattt tatttctatg gtttagcagg tggaggatat gaggattttt caaatgctgc
     1501 ttatgataat aaaagcggtg gatttggaca ttatggcgcg ggtgtaaaat tccgtcttag
     1561 tgattctttg gctttaagac ttgaaactag agatcaaatt aatttcaatc atgcaaacca
     1621 taattgggtt tcaactttag gtattagttt tggttttggt ggcaaaaagg aaaaagctgt
     1681 agaagaagtt gctgatactc gtgcaactcc acaagcaaaa tgtcctgttg aaccaagaga
     1741 aggtgctttg ttagatgaaa atggttgcga aaaaactatt tctttggaag gtcattttgg
     1801 ttttgataaa actactataa atccaacttt tcaagaaaaa atcaaagaaa ttgcaaaagt
     1861 tttagatgaa aatgaaagat atgatactat tcttgaagga catacagata atatcggttc
     1921 aagagcttat aatcaaaagc tttctgaaag acgtgctaaa agtgttgcta atgaacttga
     1981 aaaatatggt gtagaaaaaa gtcgcatcaa aacagtaggt tatggtcaag ataatcctcg
     2041 ctcaagcaat gacactaaag aaggtagagc ggataataga agagtggatg ctaaatttat
     2101 tttaagataa tgaataaaac tattttattt gatttagatg gcactttaat tgattctact
     2161 gatgctattt taaattcttt ccaaggagct tttaaagccc ttggattaac ttctaaaaat
     2221 aatgaagaaa tcaaaaatct cataggttat cctttagagc aaatgtttag aatgctttat
     2281 ccagataaag taaatttaag taaagaattt gtattagctt atcgtgaaat ttatgcacaa
     2341 atttatttag aacaaaccac tcttttgcct aaagcaaaag aagcattaga acttggaagc
     2401 gaaattgcag atcttggtat agttacaaca aaaggaggta aatttactcc gattctgctt
     2461 gattatttgg gagttaaaaa attctttaaa actttaatta ctcttgaaga tgtcacaaat
     2521 ccaaagccaa gttccgaacc tataatttta gccttaaaag gactcaataa aactcaagaa
     2581 aatgcctata tgataggcga tacaatatta gatattcaag ctgcaatttc tgctaatatc
     2641 actcctttgg ccttaacttg tggctatggc aatgaaaatg aattaaaagc tcattctatg
     2701 gtatttttaa atgcatatga ggctgttaat tatatagcta gattaaacta atttcaagtt
     2761 ttcgttaaac gccttttaag agaatttata gtaaattgat agttaaaaaa ttataaaaat
     2821 tatcaatata aaggaaggtc tcaatgggta aaattatgaa aactatggac ggaaatgagg
     2881 ctgctgcata cgctgcgtat gcttttactg aagttgctgg aatttatcct attacaccta
     2941 gttctcctat ggctgattat accgatatgt gggcagctgc aggaaaaaaa aatctttttg
     3001 gagttcctgt aaaaatcgta gaaatgcaaa gtgaagcagg agctgcaggt agtgtgcatg
     3061 gatctttaca agctggggct ttgactacaa cttatacggc ttctcaagga ttactcctta
     3121 aaattccaaa tatgtataaa atagcaggtc aattactccc ctgtgtaatc catgtagcag
     3181 cgcgttcttt ggctgctcaa gctttgtcta tctttggtga tcatcaagat atttatgcag
     3241 caagacaaat tggttttgct atgctttgtt cgcattctgt gcaagaaacc atggacttag
     3301 ctggtgtagc acatttagct gcaattaagg gaagagtgcc atttttacat ttttttgatg
     3361 gttttagaac aagccatgaa attcaaaaag ttgaagtaat ggattatgcg cattttgata
     3421 gattattaga tagagaagct ttgcttgaat ttagaaataa tgctttaaat ccagaaaatc
     3481 caaaaacacg tggaacagca caaaatgatg atatttattt tcaaactaga gaagtaagca
     3541 atcgttttta cgatgcttta cctgatgttg ttaatgaata tatgcaagaa atttcaaaaa
     3601 ttacaggtag agaatacaaa ccatttactt attatggtca caaagagcca gagtgtgtga
     3661 ttgttgctat gggttctgta actcaagcac ttgaagaagt ggtggactat cttaatgcca
     3721 agggtgaaaa ggtagggatt ttaaaagttt atctttatcg cccatttagt ttaaaatatt
     3781 tctttgatgt tatgccaaaa tcagtgaaaa aaatcgcggt tttagataga accaaagaac
     3841 caggaagtct cggagaacca ctttatcttg atgtaaaatc agctttctat ggaagagaaa
     3901 atgctcctgt tatagtgggt ggaagatacg gactttcttc aaaggatgtt gatcctgctc
     3961 aaatgatagc agtatttgaa aatcttaaac ttgataatcc aaaagatggc tttactgtag
     4021 gtataattga tgatgtaact catacttcac tgagtactgg agagaaaatt tcacttggag
     4081 atgaaagtac gatcgaatgt ttattttacg gacttggtgc tgatggaact gtgggtgcaa
     4141 ataaaaactc gattaaaatc atcggagata aaacggattt ttacgctcaa gcttattttg
     4201 cttatgattc taaaaaatca gggggttata caagaagcca tttaagattt tctaaaaaac
     4261 ctatccgttc aacttatctt gtttcaactc cgcattttat cgcttgttcg gtagcggctt
     4321 atttggaaat ttatgatgtt ttagcaggaa ttcgcaaagg aggaactttc cttttaaata
     4381 gtatttggaa tgctgaagaa accataagac aacttccaga tgcagtaaag aaaactttag
     4441 ctgaaaaaga agtaaatttt tatatcatca atgcaaccaa actagctcgt gatataggtt
     4501 tgggaaatcg tacaaatacc attatgcaat cagccttttt caaacttgca aaaatcattc
     4561 cttatgaaga cgcacaaaaa tacatgaaag agcttgcgta taaatcttat agtaaaaaag
     4621 gcgatgctat tgtagaaatg aattacaagg ctattgatgt gggtgctgat ggacttgtaa
     4681 aagttgaagt ggatccaaat tggaaaaatt tagagcttaa agaaaaagaa caaaccaatg
     4741 cctataaagg tactgaattt gttgaaaaaa tcgtaaaacc tatgaatgcg gctaagggtg
     4801 atgatttacc tgtttcagcc tttttaggtt atgaagatgg aagttttgaa cacggcacaa
     4861 ccgaatacga aaaacgcggt gttggggtta tggtaccaag atggatagag gcaaattgta
     4921 ttcaatgcaa tcaatgtgct tcagtttgtc cgcatgctgt tatcaggcca tttttgatta
     4981 atgatgaaga aatggcaaat gcacctcgcg gtgtaaaaga tcatgcttta gaagctaaag
     5041 gaaccaaagg agaaaaatta agctttaaaa ttcaagtttc tccacttgat tgtacaggct
     5101 gtgagctttg tgttcatgag tgtcctacta aagaaaaatc tttggttatg gtaccacttc
     5161 aagaagagat ggattttggt gagcaagaaa atgcggatta tttatttaaa gaaattactt
     5221 ataaagatga tattttaaat aaagaaacca caaaaggagc gcaatttgcc caacctttat
     5281 ttgaattcca tggggcatgt cctggatgtg gggaaactcc ttatattact ttaattacaa
     5341 gattgttcgg tgaaagaatg attgtggcta atgctacagg ttgtagttct atttatgggg
     5401 gttcagctcc atcaactcct tatagaaaaa gtgtgaaaaa tggacacggt cctgcttggg
     5461 gaaattcact ttttgaagac aatgctgagt ttggtttggg tatgaaaatt gcaactgaaa
     5521 atacaagaca ccgcattgaa catatcatga atgaaagtat gcaagaagtt ccaaatgctt
     5581 tatcagctct ttttaaagat tggattgcaa ataaagacaa tggtgctatg tctgtggaaa
     5641 ttaaagataa aatgatccct attttagagc aaaataaaaa tattaaagct gtacaagata
     5701 tattagagct taaacagtat ttaagtaaaa aatctcactg gatttttggt ggtgatggtt
     5761 gggcttatga tataggctat ggcggacttg atcatgtttt agcaagtgga gaaaatgtaa
     5821 atattttagt gcttgataca gaagtttatt ctaatacagg cggtcaaagt tcaaaatctt
     5881 ctagaacagg agctgtagca cagtttgcag cagcaggcaa acctatacag aaaaaagatc
     5941 taggtcaaat tgctatgact tatggttata tttttgtagc acaagtaaat tcaacggcaa
     6001 attatactca tcttatcaaa gctatcactg cagctgaggc ctatgatgga ccatctttgg
     6061 tgatttgtta ttctccttgt atagctcatg gtattaaagg tgggctgggt tactcaggag
     6121 agcaaggtga gcttgctaca aaatgtggtt attggccact ttataccttt gatcctcgtt
     6181 tagaagagca aggaaaaaat cctttaactc taacaggaaa agaacctgat tgggatttat
     6241 atgagcaatt tttgatgaat gaagtgcgtt ataattcact taaaaaagca aatcctgaac
     6301 acgctgctga gctttttgaa cgcaataaaa aagacgctca acgtcgctat agacagctta
     6361 agcgtattgc tatggctgat tatagcaatg aggtcgaaag ctgataaaat atatttttag
     6421 tgctacattg tgttttagca ctttgtttgc acaagataat tttgaagagt attttaaact
     6481 tatagataaa gaaaatcgta taaattttaa tactcttcaa aacccatttg tgaatcctac
     6541 ttttgaaaaa ttaagacata ttaaaattac tgcaattatg cttgataaag taaaaattta
     6601 tgatcgatgg tataaaaaag gtgatatgat tgatgatgct ataatatatg aaataaatac
     6661 taaagagatt aaattccaat atgataattt agaaattgca atccaaataa ataaaaatga
     6721 taagattaat attaatatta attaacattc ttttttgcca ttatctttat gctttagatt
     6781 gtcaaaagcg tctttttgat atcagtatta acgaaaaatt aagcatacaa gaaagtcttg
     6841 atgagcttgc aaaatattgt tctttcagta ttattgttaa agataaaatt gccaaagaaa
     6901 aattagaaac attgcaaaac tctgtcaata ttcatcaaat gagtttggac gaaattttta
     6961 atttttttat caaagagcat gatcttagct atgattttga tggtaaaatt ttaagaattt
     7021 caggcattaa tacgaagatt tttaagataa gttatatcac ttctatcaga gaaggacaaa
     7081 gcataactaa agcgtctgta gacgctaaac caaggcaaag tgaatatagc ggtagttttg
     7141 atgatgcaga agacaacatg attaaaagta tggaaaaatt tgatttttgg caaaatatag
     7201 aaaaagagat tattgtatta ttaaaaaatt ctcatgaaga ttatgaggct aaaactccca
     7261 ttataaatcc caatgcaggt cttattatag taactggaac aaattctcag ttaaaaagtg
     7321 tgaaaaatta tttgcaaaaa ctagaaaatc gtcttaaaaa acaagttatt atcgatgtta
     7381 gcatacttgc tgtgagttta aatgaaagcc attctagtgg gattaattgg caaaatttta
     7441 atataggttt aaattcacaa gtaaataatg aaaattcttt tattcagttt caaaatgggc
     7501 aaggttttgt taagaatttg ggtttaaggg cgaatttaaa ttttgattct attattaact
     7561 ttctttctca aaatggaaaa actagcgtgc tttctaatcc aaagcttatg gctttaaata
     7621 accaacaagc cattatttct gtaggcgata ctataaatta tcaagttaaa gaaagttcta
     7681 aaggtactga aaatgggact actgttagtg aaagttataa taattattct atttttgtag
     7741 gcattttact caatatcttg cctgaaattt ctgatgatgg aaaaataatg cttaggatta
     7801 atccaagctt aagtgatttt aagtatccag aagataataa acgacaaaaa gaaccaagaa
     7861 ctattgctcc tgataccata caaaaaaagc tttctagtgt tgtgcaagta gagaataatc
     7921 aaactttaat tttaggcgga ttgatttctc acgataaatc taatgagaaa aattctatca
     7981 attttctatc aaaaattcca atcctaggtt ctttgtttaa aggagaagtt ttaaattcta
     8041 aagcaaccga aatcgttttt attatcactc caagtatagt agatagcgta aatgctccaa
     8101 gtcttaaaga tctaggattt aagcattatg agtaaaatta ttccatttag agaagaaatt
     8161 tttcatcaaa tcaatcaaat tttagaaagc caaaaagctt ttattttttt atggggaaaa
     8221 agtggtagtg gtaaaagtgt attgttgcaa agattggcaa aaaaatataa tgttgatttt
     8281 attaatgaaa attttaaaga tcagagtttc ttaaaagaaa aaattgagtt tttgatttca
     8341 caaggtcaga gtttaatcat tcttgatgaa gtgggaatgt atgattatgc aatgctagaa
     8401 agcatcagga tttatagtga ttctataagt tttgttttaa gttctcataa aaagttaaat
     8461 atacttaaaa aagagcattt taaaagtcgt ttaagtgctt gttttaaatt gaaaaatatt
     8521 agtcttttag aacttgatga ttatattaaa ttgaaatttg gaatgaattt ttcaaataaa
     8581 tgtcttaagt ttttacaaaa
//
LOCUS       DAPIWQ010000065         8561 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.065, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000065 DAPIWQ010000000
VERSION     DAPIWQ010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8561)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8561)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8561
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.065"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(64..516)
                     /locus_tag="RJ267_001048"
     CDS             complement(64..516)
                     /locus_tag="RJ267_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HDV7388914.1"
                     /translation="MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCSLLDLAK
                     YELDLYFTHKLRKFSIPVLIQGTDFESKVYKALMEIPYGKIATYKDIAEKINHPKAFR
                     AVGNANSKNQIPIFIPCHRVIASNGIGGYNGGLEIKRFLLENEGVNLK"
     gene            571..3117
                     /locus_tag="RJ267_001049"
     CDS             571..3117
                     /locus_tag="RJ267_001049"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HDV7388915.1"
                     /translation="MSFMQEYNKLVEERAALGIPPLPLNANQTRELCKLLENENNEEL
                     ANLLENRVNPGVDDAALVKCEFLDSILKGKISAPNIDKKRALRMLGTMLGGYNVKVLI
                     DALKDENIAKDAAEVLKNIIFVHDNFHTIAELSKNNPHAKEVLQSWANADWFNKKEKL
                     PQVIKCIVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQTGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIEGVPNKHSGGIIMGSTIAPIFFNTAQD
                     SGALPIICDVTNLEMGDEFEIHPYEGKIIKNGSTIAEFTLSPNTLLDEVRAGGRIPLI
                     IGRGLCTKAREFLGMESENIFTKPEQPKSSSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     ITLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNVPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEVGYENK
                     ATLARRAEKMREWLKNPTLLRADKDAKYAYIIDINLNNIKEPILACPNDPDDVATLSE
                     ILADDKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLIN
                     EGYYSIFGAAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSEKLSNEHKANIYRYLNFNEIENFKLEN"
     gene            3167..4405
                     /locus_tag="RJ267_001050"
     CDS             3167..4405
                     /locus_tag="RJ267_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDV7388916.1"
                     /translation="MKLLFTSFCCFASLMASDAINCDNIKNNKTLLNESSNLDYLNIA
                     SSCKESLKNQDFTKKLYAISNEIRGSNSSCNGVAYLPKLQQFDFLLLKIAIDPIAYQK
                     TLDTPENLEKKYDILKSYFRYWAYQSIGNFRLYKAFWQEYNNAIEPLEKYFESNFNFD
                     KGSNIYYTSNALNEFLNWAVGETKIYKDISPLAKIMSNKNYSVSYIQDFIFSNNPSQD
                     DLTIALQAALLNQREKEILELLIRFGARIDEGYESAIFYALESYENTNFLIQNGANVN
                     QANAFGKTPLFYAIEFNRLDIIKLLLDNGANVNQKYINNNEKLALSANIGSNTPYFIT
                     FCALEHTSKNVLMHAAAYGNVEILKLLISKGANFNAVDDLGFNALDFALSAGKKENAD
                     YLKSLGLKANENLFYGGSLE"
     gene            4402..5151
                     /locus_tag="RJ267_001051"
     CDS             4402..5151
                     /locus_tag="RJ267_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HDV7388917.1"
                     /translation="MKTAFITGASSGFGRACVEAFIQEGYKAIALARRKERLEELKNA
                     YKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINT
                     MVDTNIKGFLYVAKAIIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
                     ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIERDE"
     gene            5148..6881
                     /locus_tag="RJ267_001052"
     CDS             5148..6881
                     /locus_tag="RJ267_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HDV7388918.1"
                     /translation="MNKFLVSLFLPLVAFANSSEAAANANLFGAFTLIPPLVAIALAF
                     ITKDVILSLFTGVLSGTFLLSLSTNIFKAQHLTFVNYYNTTVESFSKIISYILGSTSD
                     PVNAGIILQILCIGGLVALITKMGGAKAVALKFAKRAKSAVSAQVNTWFLGLLIFFDD
                     YANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKTAYE
                     HIGISNISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEVRARTTGQIAP
                     LPKSGTLDTTELEDQFLAPKEGIKIRAFDAIVPIFTLIILAILGFYFNGLSTLEGEEL
                     AKASTNPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEAVETWIY
                     GWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLLADKLPEFILPATIFAFASAISFA
                     IGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCSPIS
                     DNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGLSVWFVLPLNFILIA
                     LLLRLIGKKVP"
     gene            6878..7951
                     /gene="trmA"
                     /locus_tag="RJ267_001053"
     CDS             6878..7951
                     /gene="trmA"
                     /locus_tag="RJ267_001053"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HDV7388919.1"
                     /translation="MSLENFGNFLTLDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTR
                     AELSFYHENDTLFYAMFDPKSKKKYIIEYLDFADEKICAFMPRLLEYLRQDNKLKEKL
                     FGVEFLTTKQELSITLLYHKNIEDIKSNLENLSNILHINLIARSKGKKLIFKTENLRQ
                     TLNIQDRKIFYEFNNDCFIQPNTAINEKMITWVCEILNTQKRMDLLELYCGYGNFTLA
                     LAPFFFKILATEISKSNINFALKNCELNNTTNIHFARLSSEELSLAIKKEREFFRLKD
                     IRLDDFNFSHVLVDPPRAGLDKSVIDLIKKYENIIYISCNPITLKENLKELSLTHRVE
                     EFALFDQFVNTPHLECGVFLSKV"
     gene            complement(7938..8354)
                     /locus_tag="RJ267_001054"
     CDS             complement(7938..8354)
                     /locus_tag="RJ267_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HDV7388920.1"
                     /translation="MEEFYPYTLTIHLLCAILFIGYLFVDVFVLGVVKKKNPNFDKSL
                     FSATGVKIMPFVVLLLFLSGGALAGFHFKPLNLLFAVKIILAFGILSLVVFSLFCHFI
                     LKKKNPLGVFIHPFVFVLCIAIVILAKLMNYFFIPC"
     gene            8473..>8561
                     /locus_tag="RJ267_001055"
     CDS             8473..>8561
                     /locus_tag="RJ267_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HDV7388921.1"
                     /translation="MNEKETISYIINTSKNIVIFALSPDKTKAS"
BASE COUNT         3060 a         1304 c         1424 g         2773 t
ORIGIN      
        1 attcttgaaa attatgatat ttttgagcaa gaatttgaaa acaaagaaaa tcaaacccca
       61 agcttatttt aaattcactc cttcattttc aagcaaaaat ctttttattt caagccctcc
      121 attatatcct cctatgccat tgcttgcaat aactctatga caaggtataa aaataggaat
      181 ttgattttta gaatttgcat ttccaacagc tctaaaagct tttggatgat taattttttc
      241 tgctatatct ttataagtag ctattttgcc ataaggaatt tccattaaag ccttgtaaac
      301 ctttgattca aaatccgtac cttgtatcaa aacaggaatg ctaaattttc taagcttatg
      361 agtaaaatat aaatcaagtt catattttgc taagtcaagc aaactacaat ttttttctga
      421 tcttttatta tcacaaaaat cgactctagt taaaaatttt ccatcactat gtaaagatag
      481 gtaacataaa ggcattttat aataaacttt aaacattttt tatccttcaa agagctacaa
      541 ttataataaa aaatatttaa ggagtagaaa atgtctttta tgcaagaata caataaactt
      601 gttgaagaaa gagccgcttt gggtatacca ccccttcctt taaatgcaaa tcaaactaga
      661 gaactttgta aattacttga aaatgaaaat aatgaagagc ttgcaaatct tttagaaaat
      721 agagtaaatc ctggtgttga tgatgcagct ttagtaaaat gtgaattttt agattccata
      781 cttaaaggca aaatcagtgc tccaaatata gacaaaaaaa gagccttaag aatgcttgga
      841 actatgctag gcggatataa tgttaaagtt ttaatcgatg ccttaaaaga tgaaaacata
      901 gccaaagatg ctgcagaagt gttgaaaaat attatttttg tacatgataa tttccatacc
      961 atagctgaac ttagcaaaaa caatccacac gctaaggaag ttttacaaag ctgggcaaat
     1021 gcggactggt ttaataaaaa agaaaaacta ccacaagtga ttaaatgtat agtttttaaa
     1081 gtagcagggg aaacaaatac cgatgatcta agccctgcag gagatgcttt tacaagaagc
     1141 gatattcctt tacatgcaaa tgccatgcta aaggtaagac aaacaggatc cttagaaaaa
     1201 atcaaagagc ttaaaaaaag cggtcgcgaa gtggtttatg taggtgatgt tgtaggaaca
     1261 ggttcaagta gaaaatcggc aataaattcc atacaatggc acttaggaaa agaaatagaa
     1321 ggtgtgccaa acaagcacag cggtggtata ataatgggtt caactatagc accgattttc
     1381 tttaacactg ctcaagatag cggggcttta cctatcatct gtgatgtaac aaacttagaa
     1441 atgggcgatg agtttgaaat tcatccttat gagggaaaaa tcataaaaaa tggctctaca
     1501 atcgcagaat ttacactcag tccaaacact ctcttagatg aagttagagc aggaggaaga
     1561 atcccactta tcataggtcg cgggctttgt actaaggcta gagaattttt aggaatggaa
     1621 agtgaaaata tctttaccaa acctgaacaa cctaaatctt caagcggtgg ttataccttg
     1681 gctcaaaaaa tgctaggtcg tgcctgtgga gttgaaggtg tgcgtccagg tatgtatata
     1741 gaacctataa ctttaactgt aggctctcaa gataccacag gtcctatgac tagagatgaa
     1801 attaaagaac ttgcaagcct aggttttaat gcagactttg ttatgcaaag cttttgccat
     1861 acagctgcgt atccaaaagt aagcgattca aatttacata aaaccttgcc caatttcatg
     1921 acaagtcgtg gtggggtaag tttaaaacca ggtgatggag ttatccactc ttggcttaat
     1981 cgttttgtat tgccagatac cgtaggaacg ggcggggatt ctcacacacg ctttcctata
     2041 ggaatttctt tccctgcagg aagtggactt gtagcttttg ctgcggttac tggttctatg
     2101 cctttaaatg tacctgaaag tgttttagtg cgttttagtg gagaattgca agccggagtt
     2161 accttaagag atttggttaa tgctatacct tattatgcaa tcaaacaagg acaacttacc
     2221 gttgaaaaga aaaataagaa aaatattttt gcaggaaaaa ttttagaaat agaaggcttg
     2281 ccaaacttaa aagtcgaaca agcttttgaa cttagtgatg caagcgctga aagatctgca
     2341 gctgcttgca gtgtggattt aagcatagaa agtgtaagcg aatatatcaa atccaatatc
     2401 tctttaattg aagctatgat agaagtagga tatgagaata aagctaccct tgccagaagg
     2461 gctgaaaaaa tgagagaatg gcttaaaaac cctactcttt taagagcaga caaagatgca
     2521 aaatatgcgt acattatcga tattaatctt aacaatatca aggagccaat tctagcttgt
     2581 ccaaatgacc ctgatgatgt ggcaacctta agcgaaattt tagccgatga caagcgtcca
     2641 aaaaatatag atgaagtttt tgtaggttct tgtatgacaa acataggaca ttatagagct
     2701 ttgggagaaa ttttaaaaga taaaggcata cttaaaacca gactttgggt agtgcctcca
     2761 acaaaaatgg ataaagcaca acttatcaat gaaggttatt acagcatctt tggcgcagca
     2821 ggtgctagaa tagaagttcc tggttgttct ttgtgtatgg gaaatcaagc aagagtaaat
     2881 gatggtgctg ttgtcttctc aacctctaca agaaactttg acaatcgtat gggtatgggt
     2941 gctaaagtat atctaggaag tgctgaactt gcagcagttt gtgcgatttt gggtaaaatt
     3001 ccaagcaagg aagaatactt acaaattgtc agcgaaaaac taagtaatga gcataaggca
     3061 aatatctata gatatttaaa ttttaatgag attgaaaatt tcaaacttga aaattaattc
     3121 aaatttaata ctaaataaca aaattaaaat tttcaaagga aaaatattga agttattatt
     3181 cacttccttt tgttgttttg caagtttaat ggctagcgat gccattaact gcgacaacat
     3241 taaaaataat aaaacattgc taaatgaaag ttcaaattta gattatttaa atatagcttc
     3301 aagctgtaaa gaatctttaa aaaatcaaga ttttacaaaa aaactctatg caatttccaa
     3361 tgaaattcgc ggaagcaata gctcttgtaa tggtgtggct tatttgccaa aattacaaca
     3421 atttgatttt ttattattaa aaatagctat cgatcccatc gcttatcaaa aaactttaga
     3481 tacacccgaa aatttagaaa aaaaatatga tattttaaaa tcttatttta gatattgggc
     3541 atatcaaagc ataggaaatt ttagacttta caaagctttt tggcaagaat acaataatgc
     3601 tatagaacct ttagaaaagt attttgaaag taattttaat tttgacaaag gcagtaatat
     3661 ttactatact agcaatgcct taaacgaatt tttaaattgg gctgttggtg aaacaaaaat
     3721 ttacaaagac attagtcctt tagcaaaaat catgtcaaat aaaaattatt cagtatctta
     3781 tatacaagat tttatttttt caaataatcc aagccaagat gaccttacta tagccttgca
     3841 agcagcgctt ctaaatcaaa gagaaaaaga aattttagaa cttttgattc gttttggcgc
     3901 taggattgac gaaggttatg aaagtgctat tttttatgca ttggaaagtt atgaaaatac
     3961 aaacttttta atccaaaatg gagcaaatgt taatcaagcc aatgcctttg gtaaaacccc
     4021 acttttttat gccatagagt ttaatcgtct tgatatcata aaactacttc ttgataatgg
     4081 agcaaatgtt aatcaaaaat atattaataa caatgaaaaa ttagcattaa gcgcgaacat
     4141 aggttcaaat acgccttatt ttattacatt ttgtgctcta gagcacactt caaaaaatgt
     4201 tttaatgcat gctgcagcct atggaaatgt tgaaatttta aaacttctta tttcaaaagg
     4261 agcaaatttt aatgctgttg atgatcttgg ttttaatgca ctcgactttg cgctatcagc
     4321 aggtaaaaaa gaaaatgctg attatctaaa aagcttgggt ttaaaagcaa acgaaaatct
     4381 attttacgga ggtagtttag aatgaaaacc gcatttatta caggagctag ttcaggtttt
     4441 ggtagagctt gcgttgaagc ttttatacaa gaaggctaca aagcaatcgc ccttgctaga
     4501 cgcaaagagc gtctagaaga gttaaaaaat gcttacaaag ataagattta cacgctttgc
     4561 atagatgtaa gaaatcaaaa agaaatcttt gaggctattg aaaatttacc caaagaattt
     4621 caagaaattg atgtgctttt taataatgca ggtttagctt taggggtaga tgaatttgat
     4681 aaattaaacc ttgaagatat taacactatg gtagatacaa acatcaaagg atttttatat
     4741 gttgcaaaag ctattattcc tatacttcgc aaacaaaaaa atgcttatat ttttaactta
     4801 ggttcggttg cgggacgcaa tccttatttt ggaggcaatg tgtattgtgg aaccaaagcc
     4861 tttgtaggac aattttcatt ggccttaaga aatgatctta gaggaagcaa tatcaaagta
     4921 acaaacattg ctccaggact ttgcaaaact gaatttagtg aagtgcgttt taaaggagat
     4981 atccaaaaag ctgatgcagt gtatgaaaat acgcaattta tcagtgctaa tgatattgcc
     5041 aaagtggtaa tgtctatcat taacctacca agccatatta atgttaatga aatcgagctt
     5101 atgccggtaa cacaaacttg gaatggattt tatatagaaa gagatgaatg aataaatttt
     5161 tagtttcatt gtttttacct ttagttgcat ttgcaaactc ctcagaagca gctgcaaatg
     5221 ctaatttatt tggagctttt acgcttatac cacctttagt tgctattgct ttagccttta
     5281 tcacaaaaga tgttatttta tcgctcttta ctggagtttt aagtggaact tttctactta
     5341 gcctttctac aaatattttt aaagcacaac atttaacttt tgtaaattat tacaatacta
     5401 cagtagaatc tttttcaaaa attatttcct atatcttagg ttcaacttca gatccagtaa
     5461 atgcaggaat cattttacaa attctttgta taggtggtct tgtggcactt atcacaaaaa
     5521 tgggaggtgc aaaagctgta gcattaaaat ttgccaaaag agccaaatca gctgtatcag
     5581 ctcaagttaa cacttggttt ttagggcttt taatattttt tgatgactat gctaatttac
     5641 taatcgtagg tccaattatg cgtcctttgg cagataaatt taaaatttct cgtgaaaaat
     5701 ttgcctttat tatcgactct accgcagctc ctgtggcagg aatagctgta atttctactt
     5761 ggataggctt agaagtttct ttaattaaaa ccgcttatga acacataggc attagcaata
     5821 ttagtgcttt tggaattttt gttgaaacca taccttatcg tttttataat atcttcatgc
     5881 ttttttttgt agtcatgact gcaatcatgg ggcgtgagtt tggttctatg tacaaggctg
     5941 aagtgcgtgc aagaaccaca ggacaaattg ctcctctacc taaatcaggc acactagata
     6001 ctactgaatt agaagatcag tttttagcac caaaagaagg tattaaaatt cgtgcttttg
     6061 atgctattgt tcctattttt actttaatca ttttagctat attaggattt tattttaatg
     6121 gacttagcac tttagaaggc gaagaacttg caaaagcaag taccaatcct ttgtcttttg
     6181 aaacttttag agctgctttt ggaaatgctg attcttctgt ggtgttattc caagctgctt
     6241 tgtttgctgc tattgtagcg atttttatcg gggtgcgtcg taaaattttc aatcttaaag
     6301 aagcggtaga aacttggata tatggctgga aaaccatgat ttttaccata gtattgcttt
     6361 tatttgcttg gtcactttca agcatagtaa aagatctagg aacttcttta tttatcacta
     6421 gtttgcttgc agacaaattg cctgagttta ttttgcctgc tactattttt gcttttgctt
     6481 cagccatttc ttttgccata ggaacaagct atggaactat ggggatttta atgcctttag
     6541 ctgtgccttt agctcatgaa atcgccaaaa tcaatggtat ggatgcaaac gctatgcatc
     6601 attatatggt tattaatata agctgcgttt taacaggtgc gatttttgga aaccattgct
     6661 caccaatttc agataatgta atcctttcat ctatgagtgc aaaatgcgat catatggagc
     6721 atgtaagaac acaaattcct tatgctttat ttatctgtgg catttcttta atcgctggat
     6781 atattcctgt atctttagga cttagcgttt ggtttgtctt gcctttaaat ttcatactta
     6841 ttgcactttt actaagactc atcggaaaga aagttccatg agtcttgaaa attttggaaa
     6901 ttttctcact ttagatgaaa aacattcttt cataaaaaaa tattttaaag aattttatac
     6961 aaaggatttt aaactttttg cttcaaaaga taaacattat cgtacaagag ctgaactttc
     7021 attttatcat gaaaatgata cgctttttta tgcaatgttt gatccaaaaa gcaaaaaaaa
     7081 gtacattata gaatatttag attttgctga tgaaaaaatt tgtgctttta tgccaagact
     7141 tctagaatac ttgcgtcaag ataataaatt aaaagaaaaa ctttttggtg tagaattttt
     7201 aaccacaaag caagaactta gcataacctt actctatcat aaaaatatag aagatataaa
     7261 gtcaaattta gaaaatttaa gcaatattct tcatatcaac ctcatagcaa gaagtaaagg
     7321 caaaaaactt atttttaaaa cagaaaatct aagacaaact ttaaatattc aagatagaaa
     7381 aatattttat gaatttaaca acgattgttt tattcagcct aatactgcta taaatgaaaa
     7441 aatgattact tgggtgtgtg aaattttaaa cactcaaaaa agaatggatt tgcttgagct
     7501 ttactgtgga tatggaaatt ttactttagc tttagcgcca ttctttttta aaattttagc
     7561 cactgaaatt tcaaaaagca atattaattt tgctttaaaa aattgcgagc ttaacaatac
     7621 aacaaatatc cactttgcaa gactttcaag cgaagaatta agtcttgcta tcaaaaaaga
     7681 aagagaattt tttcgtttaa aagatattcg attagatgat tttaatttct ctcatgtttt
     7741 agttgatcca ccccgtgcag gacttgataa aagcgtaatt gacttaataa aaaaatatga
     7801 aaatattatt tatatttctt gcaatcctat cactttaaaa gaaaatttaa aagaattaag
     7861 cctaacacat agagtggaag agtttgctct gtttgatcaa tttgtcaata ctccacatct
     7921 tgaatgtgga gtatttctta gcaaggtata aaaaaataat tcattaattt agccagtatt
     7981 actatcgcga tacaaagcac aaatacaaaa gggtggataa aaacaccgag tggatttttc
     8041 ttctttaata taaaatgaca aaataaagaa aaaacaacta aagataaaat tccaaaagcc
     8101 aaaataattt ttacagcaaa aagtaaattt aaaggtttaa aatgaaaacc tgccaaagca
     8161 cctccactta aaaaaagcaa aagaacaaca aaaggcatta ttttaactcc agtagcacta
     8221 aaaagacttt tgtcaaaatt aggatttttc tttttaacta cacccaaaac aaatacatca
     8281 acaaacaaat aacctataaa caaaatagca caaagaagat ggattgttaa agtatatgga
     8341 taaaattctt ccatttttcc ctccttatta aacttcggaa tttgctatat tataacactt
     8401 ttttcatttt ttgaattcac tttagttaat tttttaatca tttaagataa aataccaaaa
     8461 caaaggttaa caatgaacga aaaagaaact atctcttata ttataaatac aagtaaaaat
     8521 attgtcatat ttgctttaag tccagataag acaaaagctt c
//
LOCUS       DAPIWQ010000066         8406 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.066, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000066 DAPIWQ010000000
VERSION     DAPIWQ010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8406
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.066"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..901)
                     /locus_tag="RJ267_001056"
     CDS             complement(<1..901)
                     /locus_tag="RJ267_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388922.1"
                     /translation="MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKG
                     FVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSFNTWPFLIV
                     LIVLVIIGSGIYYFDTLKTFFKDEQNNTSATVIDIIGQAQENLKSLGGNNVVVIDNNK
                     AQETNRTESVLPSQNISLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTPKTDS
                     LKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLDKDQLILTGAAALTMFDQENK
                     EQKFPAGISKRFLIKDGKITSISA"
     gene            complement(894..1577)
                     /gene="rlmB"
                     /locus_tag="RJ267_001057"
     CDS             complement(894..1577)
                     /gene="rlmB"
                     /locus_tag="RJ267_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HDV7388923.1"
                     /translation="MIVYGKQIFFYILEYHKDCINELYLAKECDKITFSKIAKSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITR
                     TAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYAS
                     DGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFA
                     ILCDRMLNA"
     gene            complement(1591..2415)
                     /gene="rsmI"
                     /locus_tag="RJ267_001058"
     CDS             complement(1591..2415)
                     /gene="rsmI"
                     /locus_tag="RJ267_001058"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HDV7388924.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLL
                     NTKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVAYLSDAGMPGISDPGKALVEF
                     AQENNITYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPS
                     IIYESPKRILSLVEQIMILDNQREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGE
                     WVVVLQSKEQNFLQNTLCEKDIMDLELSLKAKAKLLSKINGKNAKEIYQKLLLSQD"
     gene            complement(2418..2618)
                     /gene="rpmE"
                     /locus_tag="RJ267_001059"
     CDS             complement(2418..2618)
                     /gene="rpmE"
                     /locus_tag="RJ267_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HDV7388925.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            complement(2697..3353)
                     /locus_tag="RJ267_001060"
     CDS             complement(2697..3353)
                     /locus_tag="RJ267_001060"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HDV7388926.1"
                     /translation="MQFLYNKQAGEEFIQLQGENFNHLKVRRVKENSELNLRNLQDNF
                     LYNYTITNLTRNSCTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKL
                     HLVFTNFSQRNFKIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVD
                     FQGEQQSHFDEKELYFIGPEGGFNNDERLLFNRKISLKSSNILKSQTAIIAIASKILL
                     "
     gene            complement(3355..3762)
                     /locus_tag="RJ267_001061"
     CDS             complement(3355..3762)
                     /locus_tag="RJ267_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388927.1"
                     /translation="MDQSYEFFLALHLYSLYASGFLMLFYLILTQGNFKTEFIFIRRI
                     RLFLPIYYLFLALIIFTGCLLSAMKQFQMNVNIWVMIFSWILIFALAIFHFVCFKKAR
                     RFRKYATFRWISCLILPFEIFLLFLPFLIERYL"
     gene            complement(3762..4187)
                     /locus_tag="RJ267_001062"
     CDS             complement(3762..4187)
                     /locus_tag="RJ267_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HDV7388928.1"
                     /translation="MQKAKILIALSFFLLVLSACSNDEKNISKTQNTDQEVVQIEQND
                     EKTELSDSNLPLPVDDEAQSSNDEHEVNPSIINSLYKQKCATCHGEKGELKPKNSTAI
                     KTLSNKIFIQKIKTIKDKNHSFLSDEQIQNLADFINKGK"
     gene            complement(4187..4768)
                     /locus_tag="RJ267_001063"
     CDS             complement(4187..4768)
                     /locus_tag="RJ267_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HDV7388929.1"
                     /translation="MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTYIRQIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAEN
                     FCRVFFILIDALLKQTKMVNGEQGVTLQSIIVHETRTGYAQGFREDAYSELMPKISLQ
                     DIEFSNGIKAEWNDIDFYNKLKNEEIFINPKEI"
     gene            complement(4765..5508)
                     /locus_tag="RJ267_001064"
     CDS             complement(4765..5508)
                     /locus_tag="RJ267_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HDV7388930.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKND
                     KTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENP
                     EFIEFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
                     KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNA
                     QKIAEFCIKNGYNYSDRIHIRLWNDKEGV"
     gene            complement(5511..6473)
                     /gene="moaA"
                     /locus_tag="RJ267_001065"
     CDS             complement(5511..6473)
                     /gene="moaA"
                     /locus_tag="RJ267_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HDV7388931.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLS
                     FEELFLFVKAAIDEGIEKIRITGGEPLLRKDLSIFIKMISDYKSDIDLAITTNGFLLK
                     DFAKDLKNAGLKRLNISLDTLDHKKAKTLAQKDVLDSVLSGIDEALNLDLKVKLNTVA
                     LKNLNDDELISLLEFAKSKKAQIRFIEFMENTHAYGKLQGLKRDEIIQILSQKYQIQL
                     IKKDEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAVEILQEVLRNKPEKNKWSVVDNETSSRAFYQTGG"
     gene            complement(6486..7001)
                     /locus_tag="RJ267_001066"
     CDS             complement(6486..7001)
                     /locus_tag="RJ267_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388932.1"
                     /translation="MSDDVLYLVFIIVLLIAMLAYMNIKERENNAKIAKLQNVIEDIT
                     KELHYFRKELGVKDDSEEDEDYKTSLLKEEIMIELDKQISSKITPVLRTLKTMEHIIE
                     DFQNEQQNRLLNLEQKAQSMAKLTPNYDTEEQKIENLFKEGKSIEQIAKDLRIGTGNV
                     ELVLKFKKLIK"
     gene            complement(6998..7495)
                     /locus_tag="RJ267_001067"
     CDS             complement(6998..7495)
                     /locus_tag="RJ267_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388933.1"
                     /translation="MELALFKAGFEAHLECCEIENNRFLGEYLKLGAISQILKWKKLA
                     LRIDFDEGEKIIFDLLLSLKEDILRLENSLDKNKELIPLKQKGVIESLNFEYLNFLDT
                     ILEEDKEYYLRFDLNNQKIAIFIKAQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIRN
                     KKGQE"
     gene            complement(7486..8370)
                     /locus_tag="RJ267_001068"
     CDS             complement(7486..8370)
                     /locus_tag="RJ267_001068"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate polyprenyltransferase"
                     /protein_id="HDV7388934.1"
                     /translation="MNTFWIKFKDILELVVFKHSIFALPFLFSSMIVASKLANDTAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIII
                     NALIFISCSYFINTLAFYLSFPVLLVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     IMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKIGLHSIPAKFGSKATLFISSF
                     CHILAVLFWLLFVWEVWGVALGKIALIGVIISGIILALEHKIVHKNFAHIDRAFFTLN
                     GYLSIIFFIFIWIDLLWN"
BASE COUNT         2823 a         1333 c         1023 g         3227 t
ORIGIN      
        1 cagctgaaat acttgtaatt tttccatctt taatcaagaa acgttttgaa attcctgcag
       61 gaaatttttg ttctttattt tcttgatcaa acattgttaa agctgcagcc cctgttaaaa
      121 ttaactgatc tttatctaaa gaaatattaa aatctttttc tttaacaaag cttgtttttt
      181 taaggctttt taaatctatc aaacctatcc aaatcttggt agaggtttta aaatgtgctt
      241 cttttaaaga atcagttttt ggtgtatttg tgtcttcttg gatttgggta tttttttctt
      301 catcgagtag ggttgtgtta ttttcactga tattattttc tatgcttatg tttttatcat
      361 tttcttgtaa tgagatgttt tggcttggta aaacgctctc tgttcgattt gtttcttgtg
      421 ctttattgtt gtctataaca acaacattgt ttccacctaa agattttaaa ttttcttgtg
      481 cttgtcctat gatatctata actgttgcac tagtattatt ttgttcatct ttgaaaaaag
      541 ttttaagtgt atcaaaataa taaattccac ttcctataat cactaaaaca ataagaacaa
      601 tcaaaaaagg ccaagtgtta aaggattttt gactataagc atctagtttt ggggttatca
      661 tttttgattt tgtttgtgga gtaggattgt tttcgttaag ataagcttca tactcttcgt
      721 taaaatcact aaagtcgagt tcgtattctc tgctcaaaat tttaacaaaa cctttaacat
      781 taaaacgact taaaacagca aaattctttt ctactaaagc ttcaagaaaa tcaagttcaa
      841 tttgcgtttt tgctgcaact tcttttaaat ttaattcttg tatttttttc caattaagca
      901 tttaacatcc tatcacaaag tattgcaaaa gcagcgctga cattaagact atcaaaatta
      961 tttttcatcg caatgcccac acattcatcg cattttttta caattttaga gcttaaacca
     1021 aaaccctcac tacccaaaac taaaactttt ttaccattgc ttatttttac actgtgaatt
     1081 tcttttcccg agccatcact cgcataaaaa taaaaaccta cttgttttag ttcatttatt
     1141 acacttaaag catcgttgct tatcacaata ggtaaatcaa gagccgctcc gctgcttgtg
     1201 cgaattactc cttccatggc taatttttca ccaataaaaa ttaaagcccc aacccctaaa
     1261 gcataagctg tacgcgtgat agcccctata tttcctacat cactaattcc ataaagcata
     1321 acaataaaat catttttttt gatctcattt aaatttgcaa aagaactttc tttaatatct
     1381 agcaaaaaac cttgatgatt tccacctttc gcataagctt gagcagtttt aaaatcaagt
     1441 tttttgattt taaaacctga ttttgcgatt ttggaaaaag taattttatc acattctttt
     1501 gctaaataaa gctcattgat acagtcttta tgatattcta aaatataaaa aaatatttgc
     1561 ttcccataaa ctatcatatt aaaattttac ctaatcttga cttaaaagca gtttttgata
     1621 aatttctttt gcattttttc cattgatctt tgataataat tttgcttttg cttttaaaga
     1681 cagctctaaa tccataatat ctttttcaca aagagtattt tgcaaaaaat tttgctcttt
     1741 tgattgcagt actacaaccc attcaccgtt taaattagac ttttttaaaa tttcagaaag
     1801 ctctttagca ttgcctttaa attttttttc aaatttttta ctgatttctt taatcaaaaa
     1861 aatttctctt tggttgtcta gaatcataat ctgttctact aaagataaaa tacgcttggg
     1921 ggattcgtaa ataatacttg gataaggaaa gtttaaaatt ttttctatat ctttttgtct
     1981 ttctttgcct ttatttgcta aaaaaccaat aaagataaat tctttttgac aaaatgctga
     2041 gcttacaaga gcaactaagg ctgcatttgc acctggtaaa atttcatagg tgatattatt
     2101 ttcttgtgca aattctacca aagccttgcc aggatcacta atccctggca ttcctgcatc
     2161 gcttaaataa gctacatttt tttcaaatat ctttaaatca atacttgcta aaacttcttt
     2221 ttcattatgg gagtgtaagg ctataaattt agaaatatgt atatcagtgt gaaatttggt
     2281 atttaataac gaaatcaaag acttacttac tcttgtatct tcgcaaaaca caagatcgca
     2341 agtctttaaa agttctaagg ctctaaaaga aatatcgctt aaatttccta tgggagtagg
     2401 aataaaataa agcataatta ttgcattgcg tattttttct taaatttctc tacacgacct
     2461 gcagcatcta caattttttc actgcctgta aaaaaaggat ggcaatttga acaaatatct
     2521 actcttaatt ctgctttgtt tgactttgtt gtaaaagtat ttccacaagc acaacttact
     2581 ttgcattcta catattctgg gtgaatttct tttttcatta gttttcctta aaaattaaaa
     2641 caataagccg tgattataaa ttatttaaca taaaaaagag attaatttaa gaaaagttaa
     2701 agcaaaattt ttgaagctat agctataata gctgtttgac tttttagaat attagagctt
     2761 ttaagagaga ttttccggtt aaacaataat ctctcatcat tgttaaatcc accttcagga
     2821 cctataaaat ataattcttt ttcatcgaaa tgactttgtt gttctccttg aaaatcaacc
     2881 ataattgcat ttggaaattt ttgaacaaat tcttgagtgc tttggtggat aattaaatcc
     2941 attttagtat ttctaccgca ttgttcacaa gaagaaataa tgattttttc aaatctttct
     3001 aaatcgattt taaaatttct ttgtgaaaaa tttgtaaaaa ccaaatgtaa cttttttact
     3061 ccaagttcat ttaagaaagg tagagttttt tctaaaattt taatatctat aatggctaag
     3121 gctaagttta attcactttg ttttatattt tgtgattttt tgtttaaaaa ttttaaagtg
     3181 caagaatttc ttgttaaatt tgtgattgta tagttgtaaa gaaaattatc ttgtaaattt
     3241 ctaagattta gctccgaatt ttcctttact cttcttactt ttaaatggtt aaagttttca
     3301 ccttgaagtt gtataaactc ttctccagct tgcttgttat acaaaaattg cattttatag
     3361 atatctttct attaaaaaag gcaaaaacaa taaaaaaatt tcaaaaggta aaatcaaaca
     3421 actaatccat ctaaaagtgg catattttct aaatcttctt gcttttttaa aacaaacaaa
     3481 gtgaaaaatt gctaaggcaa aaattaagat ccaagaaaaa atcattaccc agatattgac
     3541 attcatttga aattgtttca ttgctgataa caaacaacct gtaaaaataa tcaaagctaa
     3601 aaataaataa taaattggta aaaataatcg tattctgcga ataaaaatga attcggtttt
     3661 aaaatttcct tgtgttagta taagataaaa aagcattaaa aaaccgctcg cataaagact
     3721 ataaagatgt aaagctaaaa agaattcgta actttgatcc attattttcc tttgtttata
     3781 aaatcagcta aattttgaat ttgttcatca cttaaaaaac tatggttttt atcttttatc
     3841 gtttttattt tttgtataaa aattttattg ctcaaggttt taatggccgt gctgttttta
     3901 ggttttaatt cccctttttc tccatgacaa gtggcgcatt tttgtttata taaagagttg
     3961 ataatactag gattgacttc atgttcatca tttgaacttt gtgcttcatc atctacaggt
     4021 aaaggcaggt tggagtcact taattctgtt ttttcatcgt tttgttctat ttggactact
     4081 tcttgatctg tattttgagt cttggaaata tttttttcat cattagaaca ggcagataaa
     4141 actaataaaa aaaaacttaa ggcaattaaa attttagctt tttgcattaa atctcctttg
     4201 gatttataaa aatttcttca ttttttaatt tgttataaaa atctatatca ttccattctg
     4261 ctttaatgcc attggaaaat tctatgtctt gaagtgaaat ttttggcatt agctcactat
     4321 aggcatcttc tctaaaacct tgtgcatagc ctgttcttgt ttcatgaaca atgatgcttt
     4381 gtaaagtcac tccttgttct ccatttacca tttttgtttg ttttaataaa gcatctataa
     4441 gtatgaaaaa tacacgacaa aaattttcag cacttacatt aacaggcagg caaatccaac
     4501 gacttgaata ttttttcatt tcttctaaat attttgcgtc atcatattta aaaagagtga
     4561 tagcatgatc aaaactatca ataatttggc gtatataggt ttttaaaagt ccaaaatcat
     4621 agaccattcc agcattatct aaatatttgc tttcaagtaa aacttcaact ttgtaagaat
     4681 gtccatgaat gctacttttg caacgcttag aagaacaaaa tctaacaatg tgtgcgtttt
     4741 caaattcaaa taattttctt ataatcatac accctcttta tcgttccaaa gacgaatatg
     4801 aattctatca gaataattat aaccattctt aatacaaaat tcagcaattt tttgagcatt
     4861 ttttttaagg ttttgctcat tttcacccat aggcatacaa aaaatttgat ttggagcttc
     4921 ttttagaatt tcattgattt ctaaaaatga attatcaaga gtattggcat ctaaaacaaa
     4981 tttataaaaa ctatcttttg cgtaattttt aaatgctttt aaagctttaa aatttaatcg
     5041 tttatctttt tttatcccac tattttggag tttaacgctt aaagcaaaaa tacattcttt
     5101 gtaaaaagga tatctatcaa aatcaatttc tatgcttcca ttgctttcaa agtgtatttc
     5161 gaatttattt tttaataaca tttggataaa ttctataaat tcaggatttt cataatggat
     5221 taatggctct ccacctgtga taacaactat aggatcaaag tcttttttta attttatcac
     5281 tctttttaaa agttcattag catttaaagt ttcataactt tctttaaaat cttttgtgaa
     5341 aacagctctt atcgtgtcac atccaatgag agttttatcg ttttttgata tttttacatt
     5401 aaaacctaaa cagttgaaat tgcaaccagc aaaacgcata aaaatagcta attttccatt
     5461 atatttgcct tctccttgaa tgcttaagaa actttcaaca agttgcaaaa ttaacctcca
     5521 gtttgataaa aagcacgaga tgaggtttca ttatcaacaa cactccattt atttttttct
     5581 ggtttatttc ttaatacttc ttgtaatatt tctacagcgg ctttaatatc accttttcga
     5641 accgcttctt ttatgcttaa tgcttcatca aaataaaggc aaggtattaa caagccttca
     5701 gcacttaagc gtatgcgatt gcaagaatcg caaaattcat ggctatgagg atctataatt
     5761 ccaaattcat aatcatctgc cttgtaaata ctcacaggtg ctttttcatc tttttttata
     5821 agttgaattt gatatttttg actcaaaatt tgtataattt catctctttt taatccttgt
     5881 aatttaccat aagcatgagt attttccata aattctataa agcgaatttg agcttttttt
     5941 gattttgcaa attccaaaag agatatcagt tcatcatcgt ttaaattttt aagagctaca
     6001 gtattaagtt ttactttcaa atctagattt aaagcttcat caattccaga taaaacacta
     6061 tctaatacat ctttttgcgc aagagttttt gcttttttgt gatctagggt atcaagtgaa
     6121 atattaagtc gtttaagtcc agcatttttt aggtctttag caaagtcttt tagtaaaaat
     6181 ccatttgtag ttatagcaag gtcaatatcg cttttataat cgctaatcat ttttataaaa
     6241 atacttaaat cttttcttaa taaaggttcc ccacctgtta tacggatttt ttcaattcct
     6301 tcgtctatag ctgctttaac aaataaaaaa agttcttcaa agcttaataa attttctttt
     6361 ggctgataat cgaaaggaat ttttggcata caataaaggc agcgaaagtt acatctttgt
     6421 gtaactgaaa ttctaagata atttatcttt ctaccgaatt gatctataag catttatttt
     6481 ccattctatt ttattaattt cttaaatttt aagacaagtt ctacatttcc agtgccaatg
     6541 cgtaaatctt tagcgatttg ttctatgctt tttccttctt tgaaaagatt ttctattttt
     6601 tgttcttctg tatcgtaatt tggtgtaagt ttagccatgc tttgtgcttt ttgttccaaa
     6661 tttaaaagac gattttgttg ttcattttga aaatcttcta tgatatgttc catagttttt
     6721 agtgttctta aaacaggagt gatttttgaa ctgatttgtt tatcaagttc aatcataatt
     6781 tcttctttta aaagagaggt tttatagtct tcatcctctt cgctatcatc tttaactcct
     6841 aattctttac gaaaataatg aagttctttg gtaatatctt ctatcacatt ttgaagtttt
     6901 gctatttttg cattattttc tctttctttg atattcatgt aggctagcat tgcaattaaa
     6961 agcacaatta taaaaactaa ataaagtaca tcatcactca ttcttggcct ttcttatttc
     7021 ttatcatatt tctttggatt tcaacaacaa aagcatcaaa agccattttg tcttcaggct
     7081 taattttgat aatttttgcc aatgtttgac tttgagcttt gataaaaata gctatttttt
     7141 gattatttaa atcaaatctt aaataatatt ctttatcttc ttctaaaata gtatccaaaa
     7201 aatttagata ctcaaaattt aaagattcta ttaccccttt ttgcttaagt ggtataagtt
     7261 ctttattttt atctaaagaa ttttcaagtc ttaaaatatc ttcttttaga cttaaaagaa
     7321 gatcaaaaat aattttttca ccctcgtcaa aatcaatgcg taaagcaagt tttttccatt
     7381 ttaaaatttg agaaattgct ccaagtttta ggtattctcc aagaaaacgg ttattttcta
     7441 tttcacaaca ttctaaatga gcttcaaatc ctgctttaaa aagtgctaat tccataataa
     7501 atcaatccaa ataaaaataa aaaagataat acttaaataa ccatttagag taaaaaatgc
     7561 tctatcaata tgagcaaaat tcttatgaac aattttatgt tccaaggcta aaataatacc
     7621 gcttataatt accccaataa gtgctatttt tccaagtgct acaccccaaa cttcccacac
     7681 aaaaagaagc caaaataata ccgctaaaat atggcaaaaa gatgatataa ataaagtagc
     7741 ctttgaacca aatttagcag gaatagagtg aagtcctatt tttttatcat actccatatc
     7801 ttgtaaagaa taaagcagat caaacccagc tgtccaaaaa gttacaccta aacataaaat
     7861 aacgctataa atgtgaattt cacccataat tataacactt cctgcaatag gcgcaagtcc
     7921 taaacaaaat cctaaaacta aatgtgctaa agaactaaag cgcttaaaag ctgaataaat
     7981 agccaatacc aaaagcacag gaaaagacaa ataaaaggcc aaggtattaa taaaataaga
     8041 acatgatata aaaataagtg cattaataat gataaaaatc catacgcttt ttctacctat
     8101 ttttccactg acattagggc gatttgcaca acgaggatta tccttatcta tatcttcatc
     8161 cattaaacga tttgtagcca tggcaaaatt tcttgcactt actgcacaaa taatgcctaa
     8221 aatcaacgcc ttaaaaccaa accaagcagt gtcatttgca agttttgatg ctacaatcat
     8281 agaggaaaat aaaaaaggca aagcaaaaat agaatgctta aatactacaa gttctaaaat
     8341 atctttaaat tttatccaga atgtgttcat ttttctactt taaaatattt tttgctatga
     8401 ttttac
//
LOCUS       DAPIWQ010000067         8380 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.067, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000067 DAPIWQ010000000
VERSION     DAPIWQ010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8380)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8380)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8380
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.067"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            76..1521
                     /locus_tag="RJ267_001069"
     CDS             76..1521
                     /locus_tag="RJ267_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HDV7388935.1"
                     /translation="MNQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVARIVEIAKACGADAIHPGYGFLSENYEFAKACEDAGII
                     FIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPITEEITGIDLIVRQIRIAAGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFVIDDIRTTIPFLIAITKTREFRRGYLDTSFIETHMQEL
                     LEKTEDRHQENKEEVIAAIAATLKKIRESRE"
     gene            1525..1776
                     /locus_tag="RJ267_001070"
     CDS             1525..1776
                     /locus_tag="RJ267_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388936.1"
                     /translation="MDFLDSLKSIKKEMQANTNTSKLAKKSSKSGASVKNLEKLAKDI
                     REKNQETNIDKEMQEIFLKQEKLQDEFSEFIKNADIKKI"
     gene            1776..2495
                     /locus_tag="RJ267_001071"
     CDS             1776..2495
                     /locus_tag="RJ267_001071"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HDV7388937.1"
                     /translation="MLEIGFCTLEDQCPYLKDKRSRIEYKYIENCPKEINNELIKRGW
                     RRFGRYFSRPICKDCDECLSLRILVNEYNFSRSERRVVNKNINTKVILRTPNLSNEHL
                     FLYDKYHRFMEEKKNWKRYDLSFKQYYNLYVDGFMNFGYELAFYIEDKLVCVDLIDIL
                     EDGISSIYCFYDPDFSYFSLGKFSLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEVLWEK"
     gene            2496..3302
                     /locus_tag="RJ267_001072"
     CDS             2496..3302
                     /locus_tag="RJ267_001072"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDV7388938.1"
                     /translation="MQIVQTLETINVNTDDISVFQYFKDLITKNFTKVIGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLIFEQNNMLKPMLFIKID
                     FVAGRILMKLSSNEKLFIAYIRNYFQDHNIEYNEMTNILILEYKNENTLELFEVFADE
                     SEHLKYCVNFEVDREEYKKFRQNIHNKENMKWKFNALAKLFSNYFNTLECTPQNDLSE
                     IRQKYLILVKLYHPDFHQGKSAIEKAYAREQFEKIQIAYDNLKALYKNNT"
     gene            complement(3326..6343)
                     /gene="cmeF"
                     /locus_tag="RJ267_001073"
     CDS             complement(3326..6343)
                     /gene="cmeF"
                     /locus_tag="RJ267_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HDV7388939.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKINGDLNFVESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKLQLMREINDKIKPFLQRVEG
                     VGKIEAKGFLEPQIRIELKPNQLRKYNLNALDVANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSTTLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KIILATLVFIGLSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLEK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQSAIVSLYRQKFQDESLK
                     IKILELPKIEGAGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISDNANATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKD
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFKFCFKLDSKLRKIYEREKLN"
     gene            complement(6346..7086)
                     /gene="cmeE"
                     /locus_tag="RJ267_001074"
     CDS             complement(6346..7086)
                     /gene="cmeE"
                     /locus_tag="RJ267_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HDV7388940.1"
                     /translation="MKKILFLLLVFNCAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVSKGELLLALDQESEKIALQNAQNSYQLALVEYENTKSRMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLNKAKINIAYYKNIMAKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVRLGDDFFYKIDQNGTELKGKINLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            complement(7083..8357)
                     /gene="cmeD"
                     /locus_tag="RJ267_001075"
     CDS             complement(7083..8357)
                     /gene="cmeD"
                     /locus_tag="RJ267_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HDV7388941.1"
                     /translation="MFEKYLKSAIFLALYPLAMLASNLHEFIALSQNNESYLIKQMQS
                     EQANLDKEQAFRNYLPSLSLNSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRALESREKLSLLDKEQNKNYLALNAITLYFNTLSLEKILLANQQKVSFLKSTFERL
                     QKFYDAGLSPKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSDTDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINLAKESVNLAKAEYFPKFYIQDNFNFYKNNYNPKVPAP
                     FANLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANARFSERKNK
                     EELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQALEVKFKA
                     QSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
BASE COUNT         2886 a         1195 c         1334 g         2965 t
ORIGIN      
        1 ttaaattttt tgctaagttt ttgtaaggaa aatttgctaa aattaacaat aaaaatataa
       61 caaaaaaggc aaattatgaa tcaaatccat aaaattctca tagcaaatag agctgaaata
      121 gctgttagag taatccgtgc ttgtagagat ttacatatta aaagtgttgc agtttttaca
      181 gagcctgatc gtgaatgttt gcatgtaaaa atcgcagatg aggcttatcg cataggaacg
      241 gatgctataa gaggatattt agatgttgct cgtattgtcg agattgctaa ggcttgtggt
      301 gctgatgcga ttcatcctgg ttatggattt ttaagtgaga attacgaatt tgctaaggct
      361 tgtgaagatg ctggaattat ttttataggt ccaaaatctg aagtaatcca taagatggga
      421 aataaaaata tcgctcgtaa gttaatggct aaaaatggca tacctattgt tccagggact
      481 gaaaaattaa attcctatag catggaagaa attaaaattt ttgctgagaa gattggttat
      541 cctgttattt taaaagcttc aggtggtgga ggtggacgcg gaattcgcgt tgttcataaa
      601 gaacaagatc ttgaaaatgc ctttgaatct tgcaaaagag aagctttaac atactttaat
      661 aatgatgaag tatttatgga aaaatatgta gttaatccca gacatataga atttcaaatt
      721 ttaggagata actacggaaa tattatccat ctttgtgaaa gggattgttc tattcaaaga
      781 agacatcaaa aggtaattga gatagcacct tgccctggaa tttcagataa tcttagaaaa
      841 accatgggtg ttacagctgt ggcagctgct aaggctgtag gttatacaaa tgctggaact
      901 atagagtttt tgcttgatga ttataatcgc ttttatttta tggaaatgaa tacaagaatt
      961 caagttgagc atccaattac tgaagaaatt acaggtattg atcttattgt aagacaaatt
     1021 cgtattgcag caggagaaat tttggactta gaacaaagcg atattaaacc taggggtttt
     1081 gctattgaag ctagaattac tgctgaaaat gtatggaaaa attttattcc aagtcctgga
     1141 aaaataggag aatactaccc agctcttgga ccatctgtta gggttgatag tcatatttat
     1201 aaagactata ctgtgccgcc ttattatgat tccatgcttg caaagcttat tattaaagca
     1261 acaagttatg atttagcggt taataaactt gagcgtgctt tgaaggaatt tgtgattgat
     1321 gatattagaa caacaatacc atttttaatt gccattacaa aaacaagaga atttagaagg
     1381 gggtatttag acacctcttt catagaaaca catatgcaag aattattaga aaaaacagaa
     1441 gatcgtcatc aagaaaataa agaagaagtt atagctgcaa tagctgctac gcttaaaaaa
     1501 atacgagaaa gtagggaata atagatggat tttttagaca gtcttaaaag tattaaaaaa
     1561 gaaatgcaag ctaacaccaa tacttcaaaa ttagcgaaga aatcaagcaa gagtggtgca
     1621 agtgtaaaaa atttagaaaa actagctaaa gatattcgcg aaaaaaatca agaaacaaac
     1681 atagataagg aaatgcaaga aattttctta aagcaagaaa aactacagga tgaattttcc
     1741 gaatttatca aaaatgcaga tattaagaaa atttaatgct tgagattggt ttttgtactc
     1801 ttgaagatca gtgtccttac ttaaaggata aacgttcaag aatagagtat aaatacattg
     1861 aaaattgccc taaagaaatc aataatgagc taataaaacg aggttggcgt cgttttggta
     1921 ggtatttttc acgccctatt tgtaaagatt gtgatgaatg tttaagtctt agaattttag
     1981 ttaatgaata taatttttca agaagtgaaa gaagggttgt aaataaaaat attaacacca
     2041 aagttatact tagaacaccc aatttaagca atgaacattt gtttttatat gataaatacc
     2101 atcgttttat ggaagaaaaa aagaactgga agcgttatga tttaagcttt aaacagtatt
     2161 ataatcttta tgtcgatggt tttatgaatt ttggatatga gcttgcattt tatatagaag
     2221 ataagctcgt ttgtgttgat ttgattgata ttttagagga tggaatttca agcatttatt
     2281 gtttttatga tcctgatttt tcgtattttt ctttgggtaa attttctttg ctcaatgaaa
     2341 tacaaatagc taaaaaaatg aacttagatt atatttatct tgggtatttt gtaaaaaagt
     2401 gtcaatcttt atcttataaa gccgattata cacctaatga aattttaaaa ggcactaaag
     2461 agctttttga aaatgaggtt ttatgggaga aatagatgca aatcgtgcaa actttagaaa
     2521 ctatcaatgt taatacagat gatattagcg tatttcagta ttttaaagac ttgattacca
     2581 aaaatttcac aaaggtcata ggacgaaaaa ataaaatttt ttcttttttt gaagaaaatg
     2641 aaattccaca gcgccgttat ttcttaaaag ttttagatca aaaatatcgt aaaagcacaa
     2701 atgaaggtat agagaattta caagatgctc attttaaaac ttttagatta atttttgagc
     2761 aaaataatat gcttaagcct atgttgttta tcaagattga ttttgttgcg ggtagaattt
     2821 tgatgaagtt aagctctaat gaaaaattat ttattgctta tataagaaat tattttcaag
     2881 atcataatat agaatataat gaaatgacaa atattctaat tttagaatat aaaaacgaga
     2941 atacccttga actttttgaa gtttttgcag atgagagcga gcatttaaaa tattgcgtga
     3001 attttgaagt tgaccgcgaa gagtataaaa aatttcgcca aaatattcac aataaagaaa
     3061 atatgaaatg gaaatttaat gctttagcta agctttttag taattatttt aatactttag
     3121 aatgcactcc gcaaaatgat cttagtgaaa tcagacaaaa atatttgatt ttggtaaaac
     3181 tttatcatcc tgattttcat caaggaaaaa gtgcaataga aaaagcttac gcaagagaac
     3241 agtttgaaaa aatacaaatc gcctatgata acttaaaagc actttataag aataatactt
     3301 aaaaaaatta aattaatcat tttggttaat ttaatttttc tctctcataa atttttctta
     3361 atttgctatc tagtttaaaa caaaatttaa aaagtgcagg tactacgagt aaggtaagca
     3421 aagtcgaact tataagtcca aagataatgg ctattgccat aggagaatta gcttcatagc
     3481 ccgcacccct tgaaagagca agtgggagca tagcaaaaat catagcaaaa gttgtcatca
     3541 atatagccct taagcgcgat tttccagcga ttaaaagagc tttatcggga tctaaacctt
     3601 catggcattt tttattagct acatctacga gtaaaatagc atttttcccc accataccaa
     3661 aaagtaagat gatggcaata agtacaaaaa gtgaaaaatt atgccctgtg ataaaaagcc
     3721 ctatagaagc tccgccaaag gctaaaggca tggttatcat gatgattaaa ggcagaataa
     3781 aactttcata aagtgcggct aaaacaagat aaattaaaac aaaagcaagt gctactgcca
     3841 tagcaaaacc ttgcacggtt tcacctaaaa gattgataaa gcctgaaaaa gcatagctaa
     3901 gacttggatt gttatttaaa attttatcca tattatctag taaaagtttt tgcaccgctc
     3961 ctaaggaaag atcattcact ccagctgtga ttttcacaga gcggttttta ttgtaacgat
     4021 tgatagtttt taaatcttta ctgtatataa aatccaccac gcttgaaagt tctaaattta
     4081 taccttggtt gtttttaatg ctaatgcgct ttaaagcttc tatgtctttt ttaaattctg
     4141 gagcaaaact taggataata tcatcttttg aattgcctct atccatgctt cctacgctaa
     4201 gttgcgagaa agaataccct aaaaccccag cgatatattg aggattgaca tctaaaagtt
     4261 tggctttttc tttgttgatg tgtaaggcta cttcatcttt tgtagcatta gcattatcac
     4321 ttatatctac aatgcgtgca ttagtgccta aaatttcttt tgcctgagaa gcagcttctt
     4381 tcagagtgtt taaatcatct cctaagatta aaaattgcac gggatcatca atgcctgcac
     4441 cctctatctt tggaagttct aaaattttga tttttaaact ttcatcttga aatttttgac
     4501 gatataaact tactatggca ctttgtctta aatttctttc gtctaaattt ttaagtttaa
     4561 cataaatttt agcctttgta gcatctttgg catcatcata gcctacaagt aaaaaagcgt
     4621 atttgacatt gctatcattt ttgatttttt caagcaaatt taaacttttt tctttcatgg
     4681 cttctaaact taaatccttt ttgctttcaa gcaaaacttg aatttcacta tcatcttcca
     4741 taggtaaaaa atcaagccct atgcgagtgg ctaaagcaaa agaaagccct ataaaaacaa
     4801 gagtggctag gataattttt actttatttt gtaaaatttt atagagtaaa ttttcatact
     4861 tttgctctat tttttcaaaa aaagcttctg ttttttcata aaacttgttt tcttttggat
     4921 ttaaaaatct tgccccaata ctaggtatta aaaatacaga aaccaaaaag cttataacta
     4981 tcccacttgc aacgcttatg cctaaggcat tgaaaaaaag ccctgatata gagttcatat
     5041 aagaaatagg gataaaaaca caaagtaaaa ctatacttat gcttaaaacg ctaaaaccta
     5101 tttcattgat acctaaaaaa gcagcttgta aaggcggata agtttttagt tttttagcaa
     5161 tattttcaat cactactata gcatcatcga taaaaattcc tatgcttaag gttaaagcta
     5221 taaaagttaa gcggtttaaa tcatagccta aaagatcgat aataaaaaaa gttgaaatga
     5281 tagaagtagg tatagctatg caagcaatga gagttgtact taaatttctt aaaaataaaa
     5341 acacgataac aagggttaga aaaatcccca aaaccatatc aaaaatcact tgagaaaggt
     5401 gcttgtggat atttaagctt ttatcataaa gcatattaat gcttatatct tttggaattt
     5461 gtttttctaa aataggcaag gcatttttga catttttaat catttcaagg gtgttataat
     5521 ttgtgatttt tccgagttct aaaagcaccc cttctttacc ttcgtataaa gcactttgtt
     5581 tttcatcttc ataaaggctt gaaatattag caatatcact taaaaatact cctgttttta
     5641 tgcgaagatt gctaagttct tctaaatttg tggcttcaaa atagcctttg atgatatagt
     5701 tatcttgatt gttgttaagt tcgcctaggg cttgtttaaa attttgactt ttgatgatat
     5761 ttgctacatc aagggcgtta agattgtatt ttctaagttg gtttggtttt aattctatgc
     5821 gaatttgggg ttctaaaaac cccttagctt cgattttacc tactccttca actctttgca
     5881 aaaaaggttt tattttgtca ttgatttcac gcatgagttg taatttatct ttagaatata
     5941 gaaaaagtga aatagcagaa ccagaatctg aactgatttt ttcaatttca ggcttagaag
     6001 gtaggcttaa agttcctatt ttatcacgca catcattggc agctacttca agatttttac
     6061 ccagtttaaa ctcgactaca cttacactaa aattatcata tgcagctgag gttatggtct
     6121 ttactccatc gatttcactt aaagcatttt ctatttcttt agtgactttt gattctacga
     6181 aatttaaatc cccatttatc ttgcttgtga tttttataag aggtatggaa acattaggaa
     6241 ataaatttac actcatgcta aaagcagaga ttagcccaaa aatcataaga gctaagaaaa
     6301 acattagcac ggtaataggt cggtttatag ctagtttaaa catttttaat ctttagtgat
     6361 gattctacct tcaccaaaaa gccctggtgt tagatttgtg gtttgcactt cagcataaat
     6421 ttttcttgtt tttacttcta tacttggata aataaggttg atttttcctt tcaattctgt
     6481 accattttga tcgattttat aaaagaaatc atcgcctaat ctaactttat ctttatattt
     6541 ttcatcaaaa cttaaaatca gtttgctttg tggataggaa aaaatttcta ttaaaggttg
     6601 agctactcct cctactcctt cgcccacttg tataaatttg tttgcgataa tagcatcata
     6661 aggtgcgcgt aattcttttt ttgccatgat atttttataa taagctatat tgatttttgc
     6721 tttgtttaaa tttaaattag cagcatcaaa cttagctttc atatcttcat agctttgttt
     6781 gtctataaca ttttctacag ctttgatttt ttgcatccta cttttggtat tttcgtattc
     6841 tacaagggca agttgataag aattttgagc attttgaaga gctatttttt cactttcttg
     6901 atcaagagca agtaaaagtt ctcctttgct gactttttgt ccaatttcta caggaatttt
     6961 ttgaaccaaa cctatgcttt caagggcaag tttgctttgt tttgatgctt ctacattgaa
     7021 acttgcgtaa atttcttcgc caaaggcgca attaaaaaca agaagtaaaa atagaatttt
     7081 tttcattctt taacctttga attaagatct atacccgcat taaaataata atttgcttta
     7141 gtaatttcaa attcattttt agcaagctct aaatcgcttt gtgctttaaa tttaacctct
     7201 aaagcttgaa gatattctac ataagaaaca agtcctgctt ggtatttttt atctacactt
     7261 tcaaaagcta aatttgcagc atttaagcta agattaagag ctaaaatttg ttcttgtaaa
     7321 acttttaaac ttttgtctaa ataatttaat tcttctttat tttttctctc gctaaatctt
     7381 gcatttgcat tggctatttg aacatttaaa cgctcttttt caacttcttt agcccttgca
     7441 ttgaaatcaa aaattttcca ttccatacct aaaataaatt gattaccttg agaatatttt
     7501 tctaagaatt gatccgctaa atttgcaaaa ggagctggaa cttttggatt ataattgttt
     7561 ttataaaagt taaaattatc ttgaatataa aattttggaa aatattcagc ttttgctaaa
     7621 tttacacttt ctttagcaag attgatttgt tctttagcta tcattacttc atagttttga
     7681 cttttttctt gttgcggatt ttctaaaaaa gcattccctt gcactttaaa atctgtatcg
     7741 cttaaaattt taatctcttt ttgtatattg gcaagtttta attcattttg actgagctct
     7801 aataagctta aatggtattt agccttaatg ctttcaagtt catctttagg gctaagtcct
     7861 gcgtcgtaaa atttttgcaa tctttcaaaa gttgatttta aaaaagatac tttttgttga
     7921 ttggctagta aaattttttc aagacttaag gtgttaaaat aaagtgtgat tgcatttagg
     7981 gcaaggtaat ttttattttg ttctttgtct aaaaggctta atttttctct gctttctaaa
     8041 gctcttaaat tagcctctct agcaccccca tcaaaaagca aaaaattaag agaaacttta
     8101 gcaaataaac tttcttgtgg atcgataatg aagcgatctt tattgttggc tacataagct
     8161 gagtttagac taagagaggg taggtaattt ctaaaagctt gttctttgtc taaatttgct
     8221 tgttcgcttt gcatttgctt aatgagatag gattcattat tttgacttag tgctataaat
     8281 tcgtgcaaat tagaagctaa cattgctaag ggataaagag ctaaaaatat agctgatttt
     8341 aaatattttt caaacatttt gatattttaa tatactttat
//
LOCUS       DAPIWQ010000068         8252 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.068, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000068 DAPIWQ010000000
VERSION     DAPIWQ010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8252
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.068"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..365)
                     /locus_tag="RJ267_001076"
     CDS             complement(<1..365)
                     /locus_tag="RJ267_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HDV7388942.1"
                     /translation="MDILKLAIKDFLSLKFLKFALIPLIFSLILMLFLGVLGFSALLD
                     YFNSLFSVGEDSFWAWFYALHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFI
                     AKEINKKYYHYDNTNEVST"
     gene            complement(367..1056)
                     /gene="dut"
                     /locus_tag="RJ267_001077"
     CDS             complement(367..1056)
                     /gene="dut"
                     /locus_tag="RJ267_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HDV7388943.1"
                     /translation="MTNIEILENMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIY
                     MECAELIDSFTWKHWKNISSLTNWENVRIEIVDIWHFILSLLLEEYRDKNNKDFKAIA
                     TEVNAVSVFQDFCKEEEYPNEGDIYGILNDIELIIHKCSGFGFNLGELLSTYFTLAIK
                     CGLNLEILYKTYIGKNVLNIFRQNNGYKDGSYKKTWNGKEDNEVLAQILEQELDFDTI
                     YKKLEECYKKA"
     gene            complement(1093..1656)
                     /gene="ciaI"
                     /locus_tag="RJ267_001078"
     CDS             complement(1093..1656)
                     /gene="ciaI"
                     /locus_tag="RJ267_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HDV7388944.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSVSYANNEEGKTL
                     NLKRQYGFSFTFEGSKLTQNDLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDENHQNAIMNNFTNKLSDLLKQNQTDDKDINASMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQDKTDDSLNLYA"
     gene            1731..2138
                     /locus_tag="RJ267_001079"
     CDS             1731..2138
                     /locus_tag="RJ267_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388945.1"
                     /translation="MDERILEFIKNEQLLSWAMIDEKGVYTASAFYAFDEKNLAFIIA
                     SHEDTKHIRLASENSSIALNIAKESKIAFLKGVQAKAEFKMASKEQMKIYFSKFPFAK
                     FDKSAKIYALELFWLKFTNNALGLSKKLEFYKK"
     gene            2210..2992
                     /gene="kpsM"
                     /locus_tag="RJ267_001080"
     CDS             2210..2992
                     /gene="kpsM"
                     /locus_tag="RJ267_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide transporter KpsM"
                     /protein_id="HDV7388946.1"
                     /translation="MLNVIYALFFRELKTRFGKNRYLGYIWVVGEPMSIVLLVTIIGT
                     IVREYHHQVMPEGISIFMFLISGIMPFFMFRSIVTQLMNGTQANLALFAYKPVKPIHV
                     FIARTLLEFCIYFVIFIIILFFAGWFFRLDVFPVHLLGVLFCIFLLICSAFALGICFA
                     IIWHFVEPLRTLLAYFSIVFYWTSGIIFPTWLTPRPLLDIFYYNPLLHIFELLRFNFF
                     ENYPLQDEYSYFYAIFWILLVLFIGLFIYYYNRQALTAVKKE"
     gene            2989..3651
                     /locus_tag="RJ267_001081"
     CDS             2989..3651
                     /locus_tag="RJ267_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7388947.1"
                     /translation="MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGYNGAG
                     KSTLMRLLSGAELPDSGKIITNKKLSWPLGLNGAFQGSLTARDNAKFVARVYGYKGKE
                     LQEKVKFVEDFAELGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
                     FREKSVKLYRERLSKSKVIMVSHNVAEIKEWCDKIIYMKNGQITVYDDVDEGIAVYQG
                     KV"
     gene            3651..4769
                     /locus_tag="RJ267_001082"
     CDS             3651..4769
                     /locus_tag="RJ267_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDV7388948.1"
                     /translation="MEENKTLLEKIKDLSIFDSFKIVWFIMIFVVIYYTLIAAPRYVS
                     TMILDVRSTSGESAQTSGILSLLSSTSTASEDLNYLKGYIESSDMLKILDEKIKLKNL
                     YQEQHIDLPFKIWDSSSIESYLKYYQARVKVHTDETTKLLKVEVEGFTPKSAHLIAQA
                     IMQESEKFINEISHKAAREQMAFAENEVQKYKERYQKAQNDLIAFQNKYGVFDPLKQA
                     ETKASLVAQIEANLAQKEAKLLTLQSYMNDAAPEVVALKAEIEAIKKQLLREKSKISA
                     NNSSQKLNDLAAKFQDLTIEATFAQKAYEAALKAYESARIEALRKIKQLVIIQSPDIP
                     ESAKYPERIYDILTAFIVLSLIFGIVKFIKMIIEEHKY"
     gene            4771..6429
                     /locus_tag="RJ267_001083"
     CDS             4771..6429
                     /locus_tag="RJ267_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HDV7388949.1"
                     /translation="MKKILILLFSCILCFGAVDVSQIISAEDQGSATTSIDQNLSSNY
                     DIANKENNLTKIHQILVFGAHLFNGNFKNYNQRVYNPDYKIAVGDQISLKIWGAVEFS
                     QVLVVDSQGNIFIPKVGAVNLLGVKNSALVSVIKARVNKIYKSNVFVYADMNAYQNVS
                     VFVTGNVNAPGLYQGLSSDSVIQYLDKAGGINLEYGSFRDIQILRNNSVIKNIDLYDF
                     LLKGQMDLFPFRSGDVILVGNVQNYAFVNGDVQRPFRFELSNDIKTLADLARVSGAKP
                     IVTNAIVKSYGEDHKLDVSAYNKMQFSKVLLRTGDEVEFHPEYVSENITISVNGEHNG
                     LKTLVVGKGTTLEDISKLIKANPQSNMQALQVFRKSVARTQKELINAQLKELETLALT
                     SGSVTAQGAAIRAQQAKTILEFIQRAKQVEPKGQIVIDNPKSYNSVILEDGDTINVPS
                     KNNLIIVQGEVSLPGAFVYDKGKDLRYYINLAGGYGERADTSKVLVIRSNGKAEKYHS
                     GIDMKRGDSVLVLPKVDSENLQIFSMLTQILYQIAIATNVVLNL"
     gene            6440..7387
                     /locus_tag="RJ267_001084"
     CDS             6440..7387
                     /locus_tag="RJ267_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HDV7388950.1"
                     /translation="MNTLEIAKEVFEKEAQAILDLATNLDENFNQAVNLMLNTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTSEDVLIAISNSGETEE
                     ILKIIPAIKKREIPLIVMCGKKNSTLVKQGDIFLNIAVEKEACPLQLAPMSSTTATLV
                     MGDALAAALMKVRNFKPDDFALFHPGGSLGRKLLTKVKDLMVSSNLPIVHPDTEFNDL
                     VDVMTSGKLGLCVVLENEKLVGIITDGDLRRALKASDKPRFDFKAKEIMSINPKVVDA
                     DAMASEAEGIMLKHKIKEIIVGKEEKVVGIIQLYAIGNV"
     gene            7387..>8252
                     /locus_tag="RJ267_001085"
     CDS             7387..>8252
                     /locus_tag="RJ267_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDV7388951.1"
                     /translation="MPLLSVIIPFGLSKERPYIEERVLQKAKFFQSDENIEFIFVEGY
                     SSKDHELKNFIQANHHIYLKDMDQKAFSQGRCRNLGASYAHSNVLLFLDVDCYISLDN
                     FEKILKLIQIKNISQNINALIVLPVVYLNKEANEKLKQYDDKFWDILIQEDLFTAKNT
                     WVKFFAPSSTSSIVINKHQFLRLGGNDENFIGHGYEDFDLFARILKACVSFEKMPTNL
                     SYDARNWNFFNFKGFRSWFSLLGYEACFYGIYIYHFYHIEPNQNAYMQNKDKNHQLFY
                     KHLKNIKKHDLKP"
BASE COUNT         2837 a         1046 c         1439 g         2930 t
ORIGIN      
        1 aaggttgaaa cttcgtttgt attatcataa tggtaatatt ttttgttgat ttctttagcg
       61 ataaaaggag taagaaaaga agtgataaaa agggctaaaa aaaccgaagc aaaaacaaca
      121 ataaaacctg aaaataaaaa acttatgatg gtgattaaaa tttgtacaaa atgaagagca
      181 taaaaccacg cccaaaacga atcttctcca acgctaaata aagaattaaa ataatcaagc
      241 aaggccgaaa agccaagtac tcctaaaaaa agcatcagta taaggctaaa aatcaaagga
      301 attaaggcaa attttaaaaa tttaagactt aaaaaatctt tgattgcaag ttttaaaata
      361 tccaaattat gcctttttgt agcattcttc tagtttttta taaatagtat caaaatcaag
      421 ctcttgttct aaaatttgag ctaaaacttc attgtcttct ttgccattcc aagttttttt
      481 atagctgcca tctttgtaac cattgttttg tctaaaaata tttaaaacat ttttacctat
      541 gtaggtctta taaagaattt caagatttag cccacattta atagctaggg taaaataggt
      601 tgaaagtaat tctccaagat taaatccaaa accactgcat ttatggataa taagctctat
      661 atcatttaaa atgccataaa tatcaccctc attagggtat tcttcttctt tgcaaaaatc
      721 ttgaaacacg cttacagcat taacttctgt ggctatagct ttgaaatctt tattgttttt
      781 atcgcgatac tcttcaagta aaagacttaa aataaaatgc caaatatcga caatctctat
      841 acgcacattt tcccaatttg ttagacttga aatatttttc caatgtttcc atgtaaaaga
      901 gtctataagt tctgcacatt ccatataaat acagcgtctc caactgatca gttttccttc
      961 tttggtgtag ccattttccc aatttaagcc gtttgtttca tcgttgagtt tttgttggag
     1021 tttgagcata ttttctaaaa tttcgatatt tgtcatttaa aaactccttg ataattttta
     1081 atattatatg atttaagcgt aaagatttaa actatcatct gtcttatctt gattttcctt
     1141 ggctttttct tgctgttttt caagttgttt tttcatttgt tctaaaactt catcaagaag
     1201 ttttttgcta tcttcaagca tggaagcatt gatatcttta tcatctgttt gattttgttt
     1261 tagtaaatca ctgagtttat ttgtaaaatt attcataata gcattttgat ggttttcatc
     1321 atttggtgtt ggtagaacat ttgccatttg catagctgat tctataattt cttttggctt
     1381 taactctccg actttagaat ttgctaaaaa gtctttgatc ataggttcaa cttctttcat
     1441 agcattttta atctcatcaa gatcattttg tgtgagctta gagccttcaa aagtaaagct
     1501 aaagccatac tgacgcttaa gattaagagt tttaccttct tcattatttg cataactcac
     1561 gctttgattg tcatacatag ataaggctaa atgtttgcca ctttttgttg tataatccat
     1621 cgaaaaactt tggtttttgc tagcatcaat ttgcatttct tccccttata tttatagttt
     1681 aaattaaaaa tcggttattt ttaaaaatat tttagtataa tttttacaat atggatgaaa
     1741 gaattttaga atttataaaa aatgagcagc ttttatcttg ggctatgatt gatgaaaaag
     1801 gtgtttatac agctagtgct ttttatgctt ttgatgagaa gaatttagct tttattatcg
     1861 cttcgcatga agatactaag catataagat tagccagtga aaattcaagt atagcactta
     1921 atatagccaa agaaagtaaa atagcttttt taaaaggtgt gcaagctaag gccgagttta
     1981 aaatggcaag caaggagcaa atgaaaattt atttttctaa gtttcccttt gctaaatttg
     2041 ataaaagtgc aaaaatttat gctttagagc ttttttggct taaatttact aacaatgctt
     2101 taggacttag taaaaagctt gaattttata aaaaataaat ttttatgatt ttgtttaaaa
     2161 aaatgagtta tgattatagt ttatgtaaaa ttgttaggta taaaaataaa tgttaaatgt
     2221 aatttatgct ttatttttta gagagttaaa aactagattt ggtaaaaatc ggtatttagg
     2281 atatatatgg gtagttgggg agcctatgag tattgtactt ttagtaacta tcataggcac
     2341 tattgttaga gaatatcatc atcaagttat gcctgaggga atttctattt ttatgttttt
     2401 gatttcaggc attatgcctt tttttatgtt tagaagtata gttacccagc ttatgaatgg
     2461 aactcaggca aatttagctc tttttgccta taaacctgta aagcctatac atgtatttat
     2521 tgctagaact ttacttgagt tttgtattta ttttgtaatt tttattatca tacttttttt
     2581 tgcgggatgg ttttttagac ttgatgtatt tcctgttcat ttgcttggag ttttgttttg
     2641 tatttttttg cttatatgtt cagcttttgc tttgggaatt tgttttgcta ttatttggca
     2701 ttttgtggaa cctttaagaa ctttgctagc ttattttagc atagtgtttt attggacttc
     2761 gggaattata tttcctactt ggctaactcc tcgtcctttg cttgatatat tttattataa
     2821 tcctttgctt catatttttg aacttttaag atttaatttt tttgaaaatt atcctttgca
     2881 agatgaatat agttattttt atgctatatt ttggatttta cttgttttat ttatagggct
     2941 ttttatctat tactataata gacaagcttt aacggcggta aaaaaagaat gataaagtta
     3001 attaatctaa caaaatctta tcctttattt agtggtggaa gacattatgt ttttaagaat
     3061 tttacttttg agtttcctga aaattgtagc ataggtttga tggggtataa tggagcgggt
     3121 aaatctactc ttatgcgtct tttaagcggg gcagaacttc ctgatagtgg taagataatt
     3181 actaataaaa aattatcttg gccattgggt ttaaatgggg cttttcaagg ttctttaaca
     3241 gctagagata atgctaaatt tgtagctaga gtatatggtt ataaaggaaa agaactccaa
     3301 gaaaaagtaa aatttgtgga agattttgca gaacttggga aattttttga tgagcctatg
     3361 aagacttatt cttcgggaat gagtgctagg atagcttttg gacttagtat ggcctttgat
     3421 tttgattatt atttgattga tgaagcagga gctgttggag atcctgcttt tagggaaaaa
     3481 agtgtgaaat tatatagaga aagattaagc aaatcaaaag tgattatggt atctcataat
     3541 gtagctgaaa ttaaagaatg gtgtgataaa ataatttata tgaaaaatgg acaaattacg
     3601 gtttatgatg atgtagatga aggaatagct gtatatcaag gaaaagttta atggaagaaa
     3661 ataaaacttt attagaaaaa atcaaagatt taagtatatt tgattctttt aaaattgttt
     3721 ggtttataat gatttttgtt gtgatttatt atacattgat tgcagcacca agatatgtaa
     3781 gcacgatgat tttagatgtt agatcaacaa gtggagaaag tgctcaaaca agtggaatct
     3841 tgtctttgct tagtagtact tctacagcaa gcgaagattt aaattatcta aaaggttata
     3901 tagaatcaag tgatatgtta aagattttgg atgaaaaaat caaacttaaa aatctttatc
     3961 aagagcaaca tatagattta ccttttaaaa tttgggattc aagctcgata gaatcttatc
     4021 ttaaatacta ccaagcaaga gttaaggttc atacggatga aaccactaaa cttttaaaag
     4081 ttgaagtaga gggttttaca cctaaatcag ctcatttgat tgctcaagct attatgcaag
     4141 aaagcgaaaa atttatcaac gaaatctctc ataaagcagc tagagagcaa atggcttttg
     4201 ctgaaaatga agtgcaaaaa tacaaagaac gttatcaaaa agcacaaaat gatttgattg
     4261 cttttcaaaa taaatatgga gtttttgatc ctttaaaaca agctgaaact aaagcaagtt
     4321 tagttgcgca aattgaggct aatttagctc aaaaagaagc taaactttta actttacaaa
     4381 gctatatgaa tgatgcagca cctgaagtag tagcacttaa agcagaaatt gaagcgatta
     4441 aaaaacagct tttaagggaa aaatctaaaa tttcagctaa caattcttct caaaagctta
     4501 acgatttggc tgctaaattt caggatttaa ctatagaagc tacttttgcg caaaaagctt
     4561 atgaagcagc tttaaaagct tatgaaagtg ctagaataga agcattaaga aaaataaaac
     4621 aacttgtcat catccaaagt ccagatattc cagaaagcgc aaaatatcct gaaagaattt
     4681 atgatatttt aacagcattt attgtattat ctttgatttt tgggattgtt aaatttatta
     4741 aaatgataat agaggagcat aagtattaaa atgaaaaaaa tattaatttt actttttagt
     4801 tgtattttat gttttggagc tgtggatgtt tcacaaatca tttcagcaga ggatcaaggt
     4861 tctgctacaa ctagcataga tcaaaattta agctcaaatt atgatatagc aaataaagaa
     4921 aataatctta caaaaattca tcaaatttta gtatttggcg ctcatctttt taatggaaat
     4981 tttaaaaatt acaatcaaag agtttataac ccagattata agattgcagt tggtgatcaa
     5041 atcagtctta aaatttgggg agctgttgag ttttcgcaag ttttagtggt ggattctcaa
     5101 ggaaatattt ttatccctaa agtaggagct gtaaatttac taggtgtgaa aaatagcgcc
     5161 cttgtaagtg ttataaaagc acgtgttaat aaaatctata aaagcaatgt ttttgtttat
     5221 gcagatatga atgcttatca aaatgtcagt gtttttgtaa caggaaacgt taatgctcca
     5281 ggactttatc aaggacttag ttcggattca gtgatccagt atcttgataa agcagggggt
     5341 ataaatttag aatatggaag ttttagagat attcaaattt tgcgtaataa cagcgtgata
     5401 aaaaatattg atttatatga ttttttacta aaggggcaaa tggatctttt tccttttaga
     5461 agtggagatg ttattttagt aggaaatgtt caaaattacg cttttgttaa cggtgatgtg
     5521 caaagacctt ttcgttttga actttcaaat gatattaaaa ctttagctga cttagctaga
     5581 gtatcaggtg ctaaacctat cgtaactaat gctatcgtaa aaagttatgg tgaagatcat
     5641 aaacttgatg tcagtgctta taataaaatg caattttcaa aagttttact tagaacggga
     5701 gatgaggtag aatttcaccc tgagtatgtt tctgaaaata taactataag tgtaaatggc
     5761 gagcataatg gtttaaaaac tttagttgtg ggtaaaggaa cgactttaga agatatttct
     5821 aaattaatta aagctaatcc acaatcaaac atgcaagctt tacaagtgtt tagaaaaagt
     5881 gtagctagaa ctcaaaaaga acttatcaat gctcagctta aagagcttga aactctagct
     5941 ttaactagtg gttctgttac agctcaaggt gcagctataa gagctcaaca agcaaaaacg
     6001 attttagaat ttatccaaag agctaagcaa gtagagccta agggtcaaat tgtcattgat
     6061 aatccaaagt cttataattc ggttatttta gaagatggtg atactattaa tgtaccaagt
     6121 aagaataatc tcatcatagt tcaaggtgag gtttctttac ctggagcttt tgtgtatgat
     6181 aagggcaaag atttaagata ttatatcaat cttgcaggag gttatggaga aagagcggat
     6241 acttcaaaag ttttggtgat acgaagcaat ggaaaagctg aaaaatatca tagtggtata
     6301 gatatgaaac gaggcgattc tgtgttggta ttgccaaaag tggatagtga gaatttacaa
     6361 attttttcaa tgttgactca aattctttat caaattgcta tcgcaaccaa tgttgtgctt
     6421 aatctttaag gtttaaataa tgaatactct tgaaatagcc aaagaagttt ttgaaaaaga
     6481 agcgcaagct attttggatt tggctacaaa tttagatgaa aattttaatc aagctgtaaa
     6541 tttgatgtta aataccaaag ggcgttgcat agttagtggt atgggtaaat caggtcatat
     6601 aggcgctaag atagcagcta ctttagcaag cacaggaaca ccaagctttt ttatccatcc
     6661 aggagaggct ttgcatggag atcttggaat gttaacttcc gaagatgttt taattgctat
     6721 ttcaaattca ggagaaactg aagaaatttt aaaaatcatt cctgctataa aaaagcgtga
     6781 aattccactt atagtaatgt gtggtaaaaa aaattctacc cttgtaaagc aaggcgatat
     6841 atttttaaat atagccgtgg aaaaggaagc ttgtcctttg cagcttgctc ctatgtcttc
     6901 gacaacagca actttagtta tgggggatgc tttagcggct gctttgatga aggtaagaaa
     6961 tttcaagcct gatgattttg ccctttttca tccaggggga agtttgggac gtaagctttt
     7021 aaccaaggta aaagatctta tggtttcaag taaccttcct atagtgcatc ctgataccga
     7081 atttaacgat cttgttgatg tgatgactag tggaaaacta ggactttgtg tggtgcttga
     7141 aaatgaaaaa ttagtgggta ttatcactga cggggatttg cgtcgtgctt taaaagcaag
     7201 cgataaacca aggtttgatt ttaaggccaa agaaatcatg agtataaatc ctaaagtagt
     7261 cgatgctgat gctatggcaa gtgaagcaga agggatcatg ttaaaacata aaatcaaaga
     7321 aattatagta ggaaaagaag aaaaagttgt aggtattatc cagctttatg ccataggaaa
     7381 tgtttaatgc ctcttttatc tgttattatt ccttttggat taagtaaaga acgtccttat
     7441 atagaagaaa gagttcttca aaaagctaaa ttttttcaaa gcgatgagaa tatagaattt
     7501 attttcgttg aaggatattc atctaaagat cacgagctta aaaattttat ccaagcaaac
     7561 catcatattt atcttaaaga tatggatcaa aaagcttttt ctcaaggaag atgtaggaat
     7621 ttaggagcaa gttatgcgca ttcaaatgtt cttttgtttt tggatgtgga ttgttatatt
     7681 tctttggata attttgaaaa aattttaaaa ctaattcaaa ttaaaaatat ttctcaaaat
     7741 atcaatgctt tgatagtttt acccgtagtg tatcttaata aagaagctaa tgaaaaatta
     7801 aagcaatacg atgataaatt ttgggatatt ttgatacaag aggatttatt tacagcaaaa
     7861 aatacttggg taaaattttt tgccccaagt tctacttcaa gtattgtgat aaataaacat
     7921 cagtttttaa gattgggcgg aaatgatgaa aattttatcg gacatggtta tgaagatttt
     7981 gatctttttg ctagaatttt aaaagcttgt gtgagttttg aaaaaatgcc tactaattta
     8041 agttatgatg ctagaaattg gaattttttt aactttaaag gttttagatc ttggttttca
     8101 ttgcttggtt atgaggcttg tttttatgga atttatatat atcattttta tcatatagaa
     8161 cccaatcaaa acgcttatat gcaaaataaa gataagaacc atcagctttt ttataagcat
     8221 ttaaaaaaca tcaaaaaaca cgatttaaag cc
//
LOCUS       DAPIWQ010000069         8131 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.069, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000069 DAPIWQ010000000
VERSION     DAPIWQ010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8131)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8131)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8131
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.069"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(30..524)
                     /gene="luxS"
                     /locus_tag="RJ267_001086"
     CDS             complement(30..524)
                     /gene="luxS"
                     /locus_tag="RJ267_001086"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HDV7388952.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISPMGCRTGFYMSLIGTPDEKSIAK
                     AWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIINNKELK
                     LENA"
     gene            639..2057
                     /gene="gatB"
                     /locus_tag="RJ267_001087"
     CDS             639..2057
                     /gene="gatB"
                     /locus_tag="RJ267_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HDV7388953.1"
                     /translation="MFEVVIGLEVHAQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNATINKKSVFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFINVKGENKRIGITRAHLEEDAGKNIHESNFSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKVRFIDKLGIKESDAEVLISSLEMSRFFESLISQNL
                     NPKLCVNWLNTELMGLLKGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFVF
                     ENTSVEIDEAIEKLGLKQVSDDSAIEAVIEQILNANADKVAEYKSGKDKLFGFFVGQT
                     MKEGKGAFNPAKVNEILKTKLG"
     gene            2054..2950
                     /locus_tag="RJ267_001088"
     CDS             2054..2950
                     /locus_tag="RJ267_001088"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HDV7388954.1"
                     /translation="MMRIAVIGAGKWGSALHLALKENHNCFISSLHQRDLEDFVSIKE
                     ALECEYLVFALSSQGMRAWLKENFINKGQKILIASKGIEDQSCQFLDEIFLDFVPKEN
                     FCVLSGPSFAAEVMQKLPTALIISGINQELCKKFASFFPDFIKTYIDNDVRGAEICGA
                     YKNVLAIASGISDGLKLGNNARAALISRGLIEMHRFGKFFGAKEETFLGLSGAGDLFL
                     TATSVLSRNYRVGLKLAQNQKLDSILVELNEVAEGVKTAYAIEKLAKMKGIYTPIVNE
                     VVAIFKGKSVQEATQSLLKQND"
     gene            2960..4138
                     /locus_tag="RJ267_001089"
     CDS             2960..4138
                     /locus_tag="RJ267_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HDV7388955.1"
                     /translation="MIIKNAKIYGDSLQDIEIKEGKITNIGSNLQGEEILDAKGMTLL
                     PSFVDLCVSLKNDKFSLANLELLENECLKGGISSIVLRDCMDFDEESFALFLQNLAQR
                     KMQIFSSVRVKDANGKLKNLATLLNKGACALELDSSLDANTLKVSSQYAFMKDSPIFV
                     RCYDKDFDDNGVMNDCEMSFELGLIGMSKIAETSQIAKMKELAKFYKNKVIFDLLSLK
                     DSLVLLDEKDLKLVSIHHLIKDDSACEDFNTAAKLMPPLRSKEDVLALREALKEGKIS
                     FLTSLHSAKSISLKDLAFDEAAFGIHSVCEFISLCYTFLIKEGFLNWQELCRFTSKNP
                     SEFLGLNSGVIEVGKEANLVLFDENEEIFAPKSSLYSEDKLFGKIKMHIIKGKNILEK
                     "
     gene            complement(4146..5672)
                     /locus_tag="RJ267_001090"
     CDS             complement(4146..5672)
                     /locus_tag="RJ267_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HDV7388956.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDPMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMVKWSEILRIAISWVASPLLGGIVAYIIYSYIDKKILKPSEKLNDDLKNIKKE
                     RKKFKEEYFLNLKTKSQEEQIKELSAIALDEEEQENNFYRNKMKEFKDQEKDIDIYSI
                     LKTHMPIIACIAAAIISAMFLFKGLNNVSTLDILQNFWIIGIIGTISYVVTFAIVKIV
                     KKTELNKTTDRIFSWFQIFTASSFAFSHGANDIANAIGPFAAILDVLKNGTINATSPV
                     PFAALAMFGVALVVGLWFLGKEVITTVGSKLATIRPTTGFSAELGASIVILLATQFGI
                     PVSSTHILIGAILGIGVYNKNANWIMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGI
                     "
     gene            5814..6620
                     /locus_tag="RJ267_001091"
     CDS             5814..6620
                     /locus_tag="RJ267_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta-barrel
                     domain-containing protein"
                     /protein_id="HDV7388957.1"
                     /translation="MRGIFYIIALFSLLNGDELTEALAKNNNQNSWEHFDYKNTKEAP
                     KIQEENVDFKSTFDSLLSKTLENNNGIDKTDGNLDFQNENVQVKNLSSLYEGENNSLL
                     FQKELFVAQNNYNYSGGLINRYEKDDFLFGVNGFIDKQKEQKDTKSFGTEFGYSKFIK
                     AYSNYYIPNEAEKNLQLGMSFVIPTYTAFAFDISKDNDKTNYQVSYSPYSVFSLNLLR
                     RDYSARETVDDTVVQVGFSFNFNESFLKQFRKKDNTLEEVNRYDFLQRTH"
     gene            complement(6617..7993)
                     /locus_tag="RJ267_001092"
     CDS             complement(6617..7993)
                     /locus_tag="RJ267_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HDV7388958.1"
                     /translation="METLSQTLAERKPPLYKRIIKSLGFWVIIGIITGIVLGYTDKEL
                     AIASKPGVDYFIGALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LAIGIFMANVMQPGHGMNLDPSQLDTKSVQKYISQTTEVSASSEIMHILKDAMPTDII
                     TPFTEGKTIQVLVIAIITALIISLMRIEDKQAIQRVFEVVQNFVFKILQIIMYFSPIA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLVFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKATVGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATL
                     AQVLPVAAIGVLLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
BASE COUNT         2869 a         1150 c         1381 g         2731 t
ORIGIN      
        1 cttaatcatt taaaaaataa agattctttt taagcattct cgagttttaa ttctttgtta
       61 tttattatgc taatacctag atttaaaact ttttgggcaa tttgtttggc ttcatctaaa
      121 gaatgcattg cgcaagttcc gcattggtag atattaagtt caggaatttt gctttgatcg
      181 cttacgctta aaacatcttt catggctgct tcccaagctt ttgcaatact tttctcatca
      241 ggtgttccaa ttaaactcat ataaaaaccc gtgcgacaac ccataggtga aatatcaata
      301 atttcaactg aatttgaatt aagatgatct ctcataaatc ctgcgaataa atgttctaag
      361 gtatgagtac ctttttcgct cataatgtct ttatttggta tgcaaaaacg caaatcaaat
      421 acgctaatat catcaccctt aggtgttttc ataactttag ctaaacgcac agcaggagct
      481 ggcattttag tatggtcaac tttaaagctg tctaataatg gcattttaac tccttaaata
      541 taaattgtct aagaattata gcatttaaag ttaatattta aagcctttct aaaagaaaaa
      601 aagataaaat aaaacattta aaaattcaag gaaattttat gtttgaagta gttataggtc
      661 ttgaagttca tgctcagtta aatacaaaaa caaaaatctt ttgctcatgt gcaacttctt
      721 ttggagaagc tccaaatacc aatgtttgtc ccacttgttt ggccttacca ggagctttgc
      781 ctgttttaaa tgaagaggct gtaaaaaaag ctatagcttt tggaaaagct gtcaatgcaa
      841 caattaataa aaaaagtgtt tttaatcgta agaattattt ttatccagat ttacctaagg
      901 cttatcaaat ttcacaattt gatatcccta tagtagaaaa gggtgagctt tttatcaatg
      961 taaagggtga aaataaacgc ataggtatta caagagcgca cttggaagaa gatgcaggta
     1021 aaaatatcca tgaaagtaat ttttctaaag tagatttaaa tcgtgcagga actcctttgc
     1081 ttgagattgt cagtgagcct gagcttagaa gtagcgatga ggcagtagct tatcttaaaa
     1141 aacttcattc tattatacgc tttttagaca tttcagatgc aaatatgcaa gaaggaagtt
     1201 ttagatgcga tgcaaatgtt agtataagac ctaagggcga tacaaaactt tatactagag
     1261 tagagattaa aaatcttaat tcttttcgtt ttatccaaaa agctatagaa tatgaggtaa
     1321 aaagacaaag tgaggcttgg gaagatggaa cttacgaaca agaagtagtt caagaaacta
     1381 gactttttga tacgacaaat ttagttacaa gaagtatgcg tggcaaagaa gaagcggcag
     1441 aatatcgcta ttttcctgat cctgatttat tgcctgtttt attaaaagat gagtttttgg
     1501 atattaaaat ccctgagctt cctgatgaga agaaagtacg ctttatagac aagcttggta
     1561 taaaagaaag tgatgcagag gttttaatca gttctttaga aatgagtcgt ttttttgaaa
     1621 gtcttatttc tcaaaattta aatcctaaac tttgcgtaaa ttggttaaat actgaactta
     1681 tgggactttt aaaaggagaa ttgactatag aaaattctcc tgtagatgct caaaagcttg
     1741 gagttttaat taaacgcata gaagatggca ctatcagtgc aaaagcggct aaagatgtct
     1801 tagcttttgt atttgaaaat actagcgtgg aaattgatga agctatagaa aagctaggac
     1861 ttaagcaagt aagtgatgat tcagccatag aagcggtgat tgaacaaatt ttaaatgcaa
     1921 atgccgataa ggttgcagag tataaaagtg gtaaagacaa gctttttgga ttttttgtgg
     1981 gtcaaacaat gaaagaaggc aaaggagctt ttaatcctgc aaaagtaaat gaaattttaa
     2041 aaacaaagct tggttgatgc gtatagcggt tattggtgcg ggaaaatggg gcagtgcttt
     2101 acatctagcc ttaaaagaaa atcacaattg ttttatcagt tctttgcatc agcgtgattt
     2161 agaagatttt gttagcataa aagaagcttt agaatgtgaa tatcttgttt ttgctttaag
     2221 ttctcaaggg atgcgtgctt ggcttaaaga aaatttcatc aacaaggggc aaaaaatttt
     2281 aattgcttca aaaggtatag aagatcaaag ttgtcaattt ttagatgaaa tttttttaga
     2341 ttttgtacca aaagaaaatt tttgtgtttt aagcggtcct tcttttgctg ctgaagtaat
     2401 gcaaaaactt cctactgctt tgataattag cgggataaat caagagcttt gtaaaaaatt
     2461 tgcaagtttt ttccctgatt ttattaaaac ttatattgat aatgatgttc gtggtgctga
     2521 aatttgtggt gcttataaga atgttttagc aattgcaagt gggattagtg atgggttaaa
     2581 acttggcaat aatgcaagag cggcactgat ttcaagaggg cttatagaaa tgcatcgttt
     2641 tggtaaattt tttggtgcta aagaagaaac ttttttaggg ttaagtgggg caggggattt
     2701 gtttttaact gcaacgagtg ttttatcaag aaattataga gtaggtttaa aactggcgca
     2761 aaatcaaaaa ttagatagta ttttagtcga acttaatgaa gtagcagaag gtgtaaaaac
     2821 tgcttatgct atagaaaaac tagcaaaaat gaaaggaatt tatacaccta ttgtaaatga
     2881 agtagtggca atttttaagg gtaaaagcgt gcaagaagca acgcagagtt tattaaagca
     2941 aaatgattaa ggaaaaatca tgataattaa aaatgcaaaa atttatggag attctttaca
     3001 agatatagag attaaagaag gaaaaattac caatattggt tctaatttac aaggcgaaga
     3061 aattttagat gctaaaggta tgactttact tccatctttt gtggatttgt gtgtgagttt
     3121 aaaaaacgat aaattttctt tagctaattt agagctttta gaaaatgagt gtctaaaagg
     3181 aggaatttct agtatagttt tgcgtgattg catggatttt gatgaagaaa gttttgcttt
     3241 atttttacaa aatttagctc aaagaaagat gcaaattttt tcaagtgtgc gggttaagga
     3301 tgcaaacggc aagcttaaaa atttagccac tcttttaaat aaaggtgctt gtgctctaga
     3361 acttgacagc tctttagatg caaatacttt aaaagtaagt tcacaatatg cttttatgaa
     3421 agactctcca atttttgtgc gttgttatga taaggatttt gatgataatg gagtgatgaa
     3481 tgattgtgaa atgagttttg agctagggct tataggcatg agtaaaatcg ctgaaactag
     3541 ccagatagct aaaatgaaag aattggctaa attttataaa aataaagtta tttttgatct
     3601 tttaagtttg aaagattctt tagtattatt agatgaaaag gatttaaaac ttgtaagcat
     3661 tcatcatctt atcaaagatg atagtgcttg tgaagatttt aatacggctg cgaaacttat
     3721 gccaccttta agaagcaaag aagatgtttt ggctttaaga gaggctttaa aagaaggaaa
     3781 gattagcttt ttaacttccc tgcatagtgc aaaatcaatt tctttaaaag atttagcttt
     3841 tgatgaagcg gcttttggaa ttcatagcgt atgcgaattt ataagtcttt gttatacttt
     3901 tttaatcaaa gaaggatttt taaattggca agagctttgt cgatttacaa gtaaaaatcc
     3961 tagtgaattt ttaggtttaa atagtggagt tatagaagtt ggcaaagaag ctaatctagt
     4021 tctttttgat gagaatgaag aaatttttgc tccaaaaagt tctctttatt ctgaggataa
     4081 actttttgga aagattaaaa tgcatataat taaaggaaaa aatattttag aaaaataagc
     4141 tttacttaaa ttcctaaaga tagtttaaat cctaaaaata caagtgctgc cataatacca
     4201 gcggctggta aagtgataat ccaagccaat cctataggct tcatcataat ccaatttgcg
     4261 tttttattat acactcctat acccaatata gcacctatga gtatatgggt ggagctaaca
     4321 ggaattccaa attgtgtagc taagagtata actatgcttg caccaagttc tgcagaaaat
     4381 ccagtagtag ggcgtatggt tgcaagtttt gaacccactg tagtaatcac ttctttacct
     4441 aaaaaccaaa gccctacaac tagagcaact ccaaacatag ctaaagctgc aaaaggtaca
     4501 ggagaagtcg cgttaattgt accgtttttt aagacatcta aaatcgctgc aaaaggacct
     4561 atagcattgg ctatatcatt ggctccgtgt gaaaatgcaa aactagaggc tgtaaatatt
     4621 tgaaaccatg agaaaattct atcagtagtt ttattaagtt ctgttttttt aacgattttg
     4681 actatagcaa atgttacaac ataacttata gttcctataa ttccgataat ccaaaagttt
     4741 tgtaaaatat ccaaagtgct aacattattt aaacctttaa ataaaaacat tgccgaaatg
     4801 atagcagcag caatacaagc aatgattggc atatgagttt ttaaaataga gtaaatatct
     4861 atatcttttt cttgatcctt aaattccttc attttatttc tatagaaatt attttcttgt
     4921 tcttcttcat ccaaagctat agcggaaagt tctttgattt gttcttcttg ggattttgtt
     4981 tttaaattta aaaaatattc ttctttgaat ttttttcttt cttttttgat atttttcaaa
     5041 tcatcattta gtttttctga tggttttaaa attttcttat caatatatga ataaataata
     5101 taagctacaa taccccctaa aagaggcgaa gctacccaag aaatagctat tcttaaaatt
     5161 tcactccatt taaccataga gagtgtttgg attccatcaa attttaaaag ccccatcata
     5221 atgctagcac ctacaatccc accaactata ctgtgtgtgg ttgatacagg taagcctttc
     5281 ttggttgcaa taaaaatcca aaccccagag cttaaaagtg cagcaagcat aatgataaca
     5341 aaaagcatag gatctaaaga atttggaaaa ataacaatac cgctgcgtat ggtcttagta
     5401 acttctgcgc ctgcgaagat tgccccgctt agctcaaaaa cagctgctat aattaaagct
     5461 tgtttaatgg ttactgtttt tgcgccaacg cttgttccaa aagaattggc tacatcattt
     5521 ccacctatat taaatgccat aaaaatgcca aatatagaag caagaataaa aagaatcaat
     5581 tgatgttgcg aaatataacc aaatccccaa ataacaaatg cgatagtact gataataaaa
     5641 ataacaaaag ctatgaggtt gtctttttgc attaataacc cttttttatt ttaattatac
     5701 acttatttac tttaaatttg ctaattttat tttttagtct ttgtggaatt tttatttata
     5761 ttattttttt ataataaata cttaaacaag aaataataag gaatataaga ataatgaggg
     5821 gtatttttta tataatagca ttgttttctt tactcaatgg cgatgaactt acagaggctt
     5881 tagcaaaaaa taataatcaa aattcttggg agcactttga ttataaaaat accaaagaag
     5941 ctccaaaaat tcaagaagag aatgtggatt ttaaaagcac ttttgatagc ttactttcaa
     6001 aaactttaga aaataataat ggtatagata aaacagatgg gaatttagat tttcaaaatg
     6061 aaaatgtgca ggttaaaaat ttaagttctc tttatgaggg ggagaataat tctttgcttt
     6121 ttcaaaaaga actttttgtg gctcaaaata attataatta ctcagggggt ttaatcaatc
     6181 gttatgaaaa agatgatttt ttatttggag ttaatggttt tattgataaa caaaaggaac
     6241 aaaaagatac taaaagcttt ggtacagagt ttggttatag taaatttata aaggcttata
     6301 gtaattatta tatacccaat gaagcagaaa aaaatttaca gcttggaatg agttttgtaa
     6361 ttccaactta taccgctttt gcttttgata taagtaagga taatgataaa actaattatc
     6421 aagtatctta ctctccttat agtgtattta gtttaaattt attgcgtcgt gattatagtg
     6481 caagagagac tgttgatgat actgttgttc aagttggatt tagttttaat ttcaatgaaa
     6541 gttttttaaa gcaatttaga aaaaaagata atactttaga ggaggttaat cgatatgatt
     6601 tcctccaaag aactcattag ttcattccag cattatgaaa tttttctgga ttgtccatag
     6661 cgtagcggaa tttttcccaa tcaatttgtt tatcccagat agcaacgatt aaagctgcta
     6721 ctgaatttcc acaaagattt ccaaccgccc tcatttcaga cataaatttg tcaacaccta
     6781 aaagaacacc tatagcagct actggtagaa cttgtgctaa ggttgcattt gcttctgaaa
     6841 tttccatatt tcctagagct gcaagcgtac ttccaagcac tataaaacct gatccagtta
     6901 cacctactgc accttttgag gctatcatta atactattaa aatactgatt tcgtgtgcta
     6961 aacttaaatt tacattgaaa gcttgtgcta gaaagattaa gctcatagct agataaatat
     7021 ttgtacaatc aagattaaaa ctatatcccg ttggtaaaac aagtccgact gttgctttag
     7081 aaagtcctgc tttttctagt tttctcatta aaggagcaag tgcagactcg cttgaactgg
     7141 ttgcaaaaac gatcaatact tctcttgaga taaatctcat aaatttgaag atatttactt
     7201 ttgcaaaata acaaatcaga cctaagattc caaatataaa aacaagacat gaaatcagca
     7261 ttactaaaag taaatatgct aagttgatca aagagccaat tccgtattga gctatgagta
     7321 cagccattgc tgaaaaggcg gcaataggac taaaatacat aatgatttgt agaattttaa
     7381 aaacaaaatt ttgtaccact tcaaaaactc tttgaattgc ctgtttgtct tctattctca
     7441 ttaaagaaat aatcaaagca gtaattatag caataactaa aacttgtatg gtttttcctt
     7501 ctgtaaaagg tgtgataata tcagtaggca tagcatcttt taaaatatgc ataatctcag
     7561 agctcgcact tacttctgtg gtttgagaaa tgtatttttg aacgcttttt gtatcaagtt
     7621 gacttggatc aagattcatt ccatggcctg gttgcataac atttgccata aaaataccta
     7681 tagcaagtgc taaagtactt acaacttcaa agtaaataac cgctttagca ccaatgctac
     7741 ctactttttt taaactttca agactaatga tgcccaaaac caaagtaaca aaaataatag
     7801 ggcctataag aacctttaaa gcacctataa aataatcaac tcctggtttg ctagcaatgg
     7861 ctaattcttt atctgtatag ccaagtacaa tacctgtaat aatgcctata atcacccaaa
     7921 atccaagact tttgataata cgtttatata aaggcggttt tctttcagct aaagtttgac
     7981 ttaaagtttc caagtttatt cactcctttt gatctttgta aaatataatt ttaacaatgt
     8041 gtatcgtaaa ttttaacaaa aaaacaaatc tagaaatact ttcttttata tgatatgata
     8101 attttttata taaacgttac aaaatttctc a
//
LOCUS       DAPIWQ010000070         8097 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.070, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000070 DAPIWQ010000000
VERSION     DAPIWQ010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8097
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.070"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1297)
                     /locus_tag="RJ267_001093"
     CDS             complement(<1..1297)
                     /locus_tag="RJ267_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HDV7388959.1"
                     /translation="MKLKLNFLPYFSFIPKKLNTNSIIFKIIKVFFIAILLSNSIYLS
                     FFENIFTQTISPFLAIWGLVLLLKSKTSKQYFWIGFFVGILWFWWIGLSSIYFNLNYL
                     VPIIPIIIGFIYGLLFRLCYLLKFDFLRLCGIFCISFIHPLGFDWFNWGIFTVYGFFD
                     PSYRGIICIFLIAYFIYEGYISRYYKIAIVLILFFSGFQYNEKQAQTLNLNYKLINTN
                     ISQDQKFLQENLKSNSDILIQDILQAINEKKELVILPETAFAFDLKNTKYELMLKELS
                     YKITIITGAFHVEKEHTYNSTYIFKKGNVYILNKHFLVPFGEEIPFFKDLTKKYFLKN
                     IEEFSKGPIQSKYKLDNQIITNAICYEATKEQNYQNSQIIIALSNNAWFNNSSEYKLQ
                     QLLMKFYASKYGVSVYHATNGKENIVILPKKLLSKDWKNL"
     gene            1270..1542
                     /gene="yajC"
                     /locus_tag="RJ267_001094"
     CDS             1270..1542
                     /gene="yajC"
                     /locus_tag="RJ267_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDV7388960.1"
                     /translation="MAENSILTSLLPLVALFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            1535..3115
                     /gene="secD"
                     /locus_tag="RJ267_001095"
     CDS             1535..3115
                     /gene="secD"
                     /locus_tag="RJ267_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HDV7388961.1"
                     /translation="MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIA
                     KVENLLKEIKGINIQSENMHYKISFTSKEVKNIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS
                     YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGLSDKSNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYK
                     NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFM
                     QRIEKNNNTRFWFGYRRR"
     gene            3115..4086
                     /gene="secF"
                     /locus_tag="RJ267_001096"
     CDS             3115..4086
                     /gene="secF"
                     /locus_tag="RJ267_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HDV7388962.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGID
                     FSGGTLVQLKYENAAPITQIREILENQGTFQNLSVTEFGSNEEVTIRFLGSNDNVSND
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT
                     SKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGT
                     LSSIFVASPTLLWFKFSVLEFRNKEIEKAKRKQDKERNRAMYEKGTV"
     gene            4096..6525
                     /locus_tag="RJ267_001097"
     CDS             4096..6525
                     /locus_tag="RJ267_001097"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HDV7388963.1"
                     /translation="MAYEASLIEKKWQKIWDENEYFEPKDDLNLPKKYILSMFPYPSG
                     RIHMGHVRNYTIGDALARYYRKIGFNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKKELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMFEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYAEELLKDLEELKDKWPNQVLTM
                     QENWIGKSEGLEFSLNLDEESKQKTKESSLEVFTTRADTIYGVSYIALAPEHKIVQNL
                     LSQNLLNQDVLNKIKVIQNQSPRERQSSEKEGYFLGIYAIHPLSGEKIPLWVANFVLA
                     DYGSGAVMAVPAHDERDFEFATKYNLAIKQVIQTQENLPYMQKLGKLINSQEFDNLDC
                     NEARLKIISQFEAKNIGKRVVNFKIRDWGVSRQRYWGAPIPMIKCQSCGIVPQKLENL
                     PITLPEDVQITGEGNPLDKHPTWKNCICPKCGKEAQKESDTLDTFFESSWYFARFASD
                     EKTWQEKALDEKSVKYWMSVDQYIGGIEHAILHLLYARFFQKALRDLGYLTQNEPFDR
                     LLTQGMVLKDGAKMSKSKGNVVDPDEIIEKYGADTARLFILFAAPPAKELEWNDDAVE
                     GAYRFICKLYDRAQNVKKGELVELKQENLNKEEKYARLKVYEALKKSFEVYHQSFAFN
                     TLIAACMEALNALALCKNEALEQEAFYIILNILEPIIPHVCFELSEELFKCKNFKKLE
                     LKEEVFVKDTLNLAVSINGKKRAEFEISSSASKEEILAFAKENTAKWLEGKSIVKEIY
                     VEGKLVNLVIK"
     gene            6522..7034
                     /locus_tag="RJ267_001098"
     CDS             6522..7034
                     /locus_tag="RJ267_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7388964.1"
                     /translation="MKKILIFCIGLFLGACGYIPTSKIANNIFDEKVYVNVELSQQDP
                     KNSIYVADTLKEMVISKLGRKLALKHEADDVINVKMNNLEFIPLAYDKNGYVISYKAK
                     LNLDFNVVFKDGSSQAFSTSGSYNFEISPNSIISDSARYEAIRAASSEAFDEFISVIA
                     IKGQKRDSKY"
     gene            7018..>8097
                     /locus_tag="RJ267_001099"
     CDS             7018..>8097
                     /locus_tag="RJ267_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388965.1"
                     /translation="MIPNTNEIAKQTLIALKERKLKPTPENYTEIFEELSLKYGITSS
                     NKAKLDKYKTLLLPIYQQELNSKTIRSLEELISFLISVLNRQSGKQFSEFFDFLYTIS
                     KTLQISKDKKIRDLAKVTSIRISKTMDSESIYLLTKKWKELERNYDENDLEEQARKYG
                     ISKYDDYDSVIKKLLVKLEERSYEHFSELLCLGLNPSLVEDLKIQGFIQNLTQKPFVI
                     GEENFKNELMEFINHRIMVDNMYVQKNLNFFNDNLKKIYELLVLLNKSNEKNMDFINT
                     LKPDENGEVKLSFEDLKLKFKQLGEKITSLNNQIEFTQSLEEREAWSVLKELDKMDEN
                     FNKYKVNYSLALFSIVNYRFIMEKYG"
BASE COUNT         2952 a          941 c         1472 g         2732 t
ORIGIN      
        1 ataaattttt ccaatctttg cttaaaagct ttttagggag tataactata ttctctttgc
       61 catttgtagc atgataaaca ctaaccccat atttacttgc ataaaatttc attaagagtt
      121 gctggagttt gtattcgcta ctattattaa accaagcatt gttgcttagg gctataataa
      181 tttgtgaatt ttgatagttt tgttctttgg tagcttcata acaaattgca tttgtgataa
      241 tttgattatc taatttatat ttgctttgta taggaccttt ggaaaattct tcaatatttt
      301 tgagaaaata tttttttgtt aagtctttaa aaaatggaat ttcttcacca aagggaacta
      361 aaaaatgctt atttaaaata tagacattgc cttttttaaa gatataagtg ctattgtaag
      421 tatgctcttt ttcaacatga aatgctcctg taataatggt gattttataa gataattctt
      481 taagcataag ctcatatttg gtatttttta aatcaaaagc aaaagcggtt tcaggcaaga
      541 ttacaagttc ttttttttca tttatagctt gaagtatatc ttgaattaag atatcagaat
      601 ttgattttaa attttcttgt aaaaattttt gatcttgaga gatattagta ttgatgagtt
      661 tgtagtttaa attaagagtt tgagcttgtt tttcattata ttgaaatcca ctaaagaata
      721 aaataagaac aattgctatt ttataatatc ttgatatata accctcatag atgaaatatg
      781 ctattaaaaa tatgcaaata atgccacgat aacttgggtc aaaaaaacca taaactgtaa
      841 aaatccccca attaaaccaa tcaaatccta aaggatggat aaaacttatg caaaaaattc
      901 cacaaagcct taaaaaatca aattttaata aataacataa tctaaaaagt aacccataaa
      961 taaaaccaat gataattggt ataattggta ctaaatagtt tagattaaaa taaattgaag
     1021 ataaaccaat ccaccaaaac caaagaatcc ctacaaaaaa acctatccaa aaatattgtt
     1081 tagaagtttt actttttaga agtaaaacta acccccaaat agctaaaaat ggactaatgg
     1141 tttgtgtaaa aatattttca aaaaatgata gataaataga atttgaaagt aaaattgcaa
     1201 taaaaaagac ttttattatt ttaaaaatga tagaattagt gtttaatttt tttggaataa
     1261 aggaaaaata tggcagaaaa ttcaatttta acttcattgt tacctcttgt agcgttattt
     1321 gcaatttttt atttcttggt gatcagaccg caacaaaaac aagcaaaagc acataaacaa
     1381 atgcttgagt ctttgcaaaa aggagataaa atcatcacta atggcggact tatttgtgaa
     1441 gtcgtaaaac cagaggagga ttttatcaaa gttaagctta atgaagacaa tgttactgca
     1501 aaaatttcaa gagaatttat agcaaagaaa attgatgcgt aattctaaaa tcaattatcg
     1561 cttgattatt tttatagcgg tatttatttt tggagtggct ttttcactcc cttctttttt
     1621 gcagtcagaa cgtggtgcga agattaattt agggcttgat ttgcaaggtg ggctttatat
     1681 gctcttaggt gtagataatg aagaagctgt aaaatctaaa ataaaatcaa ttgcatcttc
     1741 attgagttat tcttttaata aagaaaatat tttaaatgat ggcttaaata cccatgatga
     1801 tattttagaa tttactttgc ttgataatgc agatattgca aaagttgaaa atttgcttaa
     1861 agaaataaaa ggaattaata tacaaagtga aaatatgcac tataaaattt cttttacctc
     1921 aaaagaagta aaaaatatag aaaattttgc acttttgcaa gcagttgaaa ccataagaaa
     1981 taggcttgat caatttggtt tagcagagcc aacagttgct aaacaaggtg atgataagat
     2041 tttggttgaa cttgcaggga ttaaaaccaa agaagatgaa ctaagagcaa aagaacgcat
     2101 cacaaaagca gcacatttgc aacttatgga agttgatgat tctaaaatgg gtcaagcttc
     2161 tacaatgagc gatgctgagg ctgcgagtta tggactgatt ttagtgcctg attctagaaa
     2221 tccaaattta aaatatacct taaaaagtat acctatttta gatggatcta tgcttactga
     2281 tgctagagta ggacttagcg ataagagtaa ttatcctgtg attaatttta ctttaaatgc
     2341 cgagggttct aaaaaatttg ctgattatac aggagcaaat gttggaaagc gtcttgctat
     2401 tgtacttgat aataaagtat attctgctcc atctatcaat gaacgcatag gcggaggtag
     2461 tgggcaaatc agtggagctt ttactcaaga agaagcacgc gatgtggcgg tagctttaag
     2521 aagtggagct ttgcttgcgc ctgtaaaatt acttgaacaa agaagcatag gaccatcttt
     2581 aggtgctgat agtattaaaa tgagtatgat agccttaatc ggtgcatcag tttttattgt
     2641 agtatttatg atgatgtatt acggtgtggc aggaattttt gcaaatattg caatgctagt
     2701 taatgttttg gtagtagttg ccgttatggc tatgtttgga gcaactttaa ctttaccagg
     2761 gatggcagga cttgttttaa ctgtgggtat ggcagtagat gcaaatgtga ttatcaatga
     2821 gcgtatacga gaactcttgc gagatggagt aaatataaga gttagtatag aacaaggtta
     2881 taaaaatgct atgagtgcga ttatagattc aaatatcact tctttagtta cttcggtagc
     2941 gctttatgcc tatggaacag gagcagttaa aggttttgct gtgactttgg gaattggtat
     3001 cgttgtttct atgattacag ctattttagg aactcatgga atgtttgatt attttatgca
     3061 acgcatagaa aaaaataata atacaagatt ttggtttggt tataggagaa gataatgcag
     3121 ttttttagcg aaaagaaaat ttatgatttt atgagaatgc gttttgctgc tatttccctt
     3181 tcttttattt tgttttttgg ttctatttat ttactttggg ataggggttt gcaatatggc
     3241 attgatttta gcggaggaac tttagttcag cttaaatatg aaaatgcagc tcctataacg
     3301 caaattcgag aaattttaga aaatcaagga acttttcaaa atttatctgt aactgagttt
     3361 ggaagcaatg aagaagtaac tatacgcttt ttaggaagta atgataatgt aagcaatgat
     3421 ataggtgagc atataagcac tcttttaaag gatacgggaa aatttgaagt gcgtcgtgct
     3481 gatgtggtag gtccaaaagt aggtgatgaa cttagaaata aaggacttat ggctatagct
     3541 gtatctttga tagcaatttt aatttatata gcgttgcgtt ttgagtggcg ttttgctctt
     3601 gcggctataa tcagtgaaat tcatgatgtt gtgattactt taggagcaat ttctttattt
     3661 aaaattgatg tcaatctaga tactttggct gctgttttaa ctgtgcttgg atactctttg
     3721 aatgatacaa ttattatttt tgatagaatc agagaaggta ttaaaacaag taaaaaaacc
     3781 gaacttgcac ctattattaa tgaaagtgtt tcagcaactt tatcaagaac ggttttaact
     3841 tcagggttga ctttagcaac cgttgtgata ctttatttct ttggcgggga aatgatacaa
     3901 ggattttctt tggctttaat tgtaggtatt atagcgggaa ctttaagctc tatttttgtt
     3961 gcaagtccga cattattatg gtttaaattt agtgtgcttg agtttagaaa taaagaaatt
     4021 gaaaaagcaa aaagaaaaca agataaagaa cgcaatcgtg caatgtatga aaaaggaact
     4081 gtgtaaggag aatttatggc ttatgaagca agtttaatag aaaaaaaatg gcaaaaaatt
     4141 tgggatgaaa atgaatattt tgagccaaaa gatgacttaa atttgcctaa aaaatatatt
     4201 ttatcgatgt ttccttatcc tagcggacgc attcacatgg ggcatgtaag aaattatact
     4261 ataggtgatg ctttagcaag atattatcgc aagataggtt ttaatgtttt acatcctata
     4321 ggttttgata gttttggcat gcctgctgaa aatgcagcta ttaaacataa aattcatcct
     4381 aagtcatgga cttatgaaaa tatagcttat atgaaaaaag aacttttttc tttaggtttt
     4441 tctttttcta aaaaaagaat gcttgctact tcagatccac tttatacaaa atttgagcaa
     4501 gaatttttta ttaagatgtt tgaaaaaggt ttgatttaca ctaaagaagc aaatgtaaat
     4561 tggtgtgaac aagatcaaac ggttttggct aatgagcaag ttgaagacgg aaaatgttgg
     4621 cgttgtggtc atgaagtggt gcagaaaaaa atgccaggtt attatgtaaa aattactgct
     4681 tatgctgagg aacttttaaa agatttagaa gaattaaaag ataaatggcc taatcaagtt
     4741 ttaactatgc aagaaaattg gattggtaaa agcgaaggtt tggaattttc tttaaattta
     4801 gacgaagaaa gtaagcaaaa aaccaaagaa agttctttag aagtttttac tacaagagca
     4861 gatacaattt atggagtttc gtatatcgct ttagctccag aacataagat tgttcaaaat
     4921 ttgctttcac aaaatttatt aaatcaagat gtattaaata aaatcaaagt tattcaaaat
     4981 caaagcccaa gagaaagaca aagttctgaa aaagaaggtt attttttagg aatttatgcc
     5041 attcatcctt taagcggaga aaaaattcct ttatgggtgg ctaattttgt cttggctgat
     5101 tatggtagtg gagcggttat ggctgttcca gctcatgatg aaagagattt tgaatttgca
     5161 acaaaatata atcttgccat caaacaagtt attcaaactc aagaaaattt accttatatg
     5221 caaaaattag gaaaattaat taatagtcaa gaatttgata atcttgattg taatgaagca
     5281 agattaaaaa tcatttctca gtttgaagct aaaaatatag gaaaaagggt tgtaaatttt
     5341 aaaattcgtg attggggtgt ttcgcgtcaa agatattggg gtgcgcctat tcctatgatt
     5401 aaatgtcaaa gttgtggtat agtacctcaa aaactagaaa atttacctat tactctgccc
     5461 gaagatgtgc aaattacagg tgagggtaat ccacttgata aacatccaac ttggaaaaat
     5521 tgtatctgtc caaaatgtgg taaagaggct caaaaagaaa gcgatacttt agatactttt
     5581 tttgaaagtt cttggtattt tgcacgtttt gcaagtgatg agaaaacttg gcaggaaaaa
     5641 gctttagatg aaaaaagtgt aaagtattgg atgagtgtgg atcaatatat aggtggtatt
     5701 gaacatgcaa tcttgcattt actttatgcg agatttttcc aaaaagcttt aagagatttg
     5761 ggttatttaa cacaaaatga accttttgat agacttttaa ctcagggtat ggtgttaaaa
     5821 gatggtgcta aaatgtcaaa atcaaaaggc aatgttgtag atcctgatga gattatagaa
     5881 aaatacggtg ctgataccgc aagacttttt atactttttg ctgcgcctcc ggctaaagag
     5941 cttgaatgga atgatgatgc ggttgaaggg gcttatagat ttatttgcaa actctatgat
     6001 agggcgcaaa atgttaaaaa aggtgagctt gtagaattaa aacaagaaaa tttaaacaaa
     6061 gaagaaaaat atgcaagatt aaaggtatat gaagctttga aaaaatcttt tgaagtttat
     6121 catcaaagtt ttgcttttaa tactttaatt gcagcttgta tggaagcttt aaatgcttta
     6181 gcactttgta aaaatgaagc tttggagcaa gaggcttttt atattatttt aaatatttta
     6241 gagcctatta ttcctcatgt ttgttttgag cttagcgagg agctttttaa atgtaaaaat
     6301 ttcaaaaaat tagaacttaa agaagaggtt tttgtaaaag atactttaaa tttagctgta
     6361 agtattaatg gtaaaaaaag ggctgaattt gaaatttcaa gtagtgcgag caaagaagaa
     6421 attttagctt ttgcaaaaga aaatactgct aaatggcttg aaggtaagag tatagttaaa
     6481 gaaatttatg tggaaggaaa gctagttaat ctagtgatta aatgaaaaag attttaattt
     6541 tttgtatagg tttattttta ggtgcttgtg gatatattcc tacatcaaaa atcgctaata
     6601 atattttcga tgagaaggtt tatgttaatg ttgaattaag tcaacaagac ccaaaaaata
     6661 gtatctatgt tgccgatact ttaaaagaaa tggtaatttc aaaattaggg cgtaaacttg
     6721 ctttaaaaca cgaggcagat gatgtaatta atgttaaaat gaataattta gaatttattc
     6781 ctttagctta tgataaaaat ggctatgtta ttagttataa agctaaatta aatttagatt
     6841 ttaatgttgt ctttaaagat ggttcaagtc aggcttttag tacaagtgga agttataatt
     6901 ttgaaatttc tccaaatagt attattagtg attctgcaag gtatgaggct attcgagcag
     6961 cttcaagcga ggcatttgat gagtttattt ccgtaattgc tattaaaggg caaaaacgtg
     7021 attccaaata ctaatgaaat agcaaagcaa actttaattg cattaaaaga aagaaaacta
     7081 aaaccaactc ctgaaaatta tacggaaatt tttgaagaat tatctttaaa atatggtatc
     7141 acaagctcaa ataaagctaa acttgacaaa tacaaaacct tgcttttgcc gatttatcaa
     7201 caagaattaa attctaaaac tataagaagt ttagaagaac taattagttt tttaatttct
     7261 gttttaaata gacaaagcgg aaaacaattt agtgaatttt ttgatttttt atataccata
     7321 tctaaaactt tgcaaataag taaggataaa aagataagag atttggctaa ggtgacttcg
     7381 attagaattt ctaaaactat ggatagtgaa agtatttact tgcttactaa aaaatggaaa
     7441 gagcttgaaa gaaattatga tgaaaatgac ttagaagaac aagctcgtaa atatggcatt
     7501 agtaaatatg atgattatga tagcgtgatt aaaaaactct tagtcaagct tgaagagcgt
     7561 agttatgagc actttagtga attattatgc ttgggtttaa atccttcatt ggtagaagat
     7621 ttaaaaattc aaggttttat acaaaattta acacaaaagc cttttgtaat aggcgaagaa
     7681 aattttaaaa atgaactaat ggaatttata aatcatcgca taatggttga taatatgtat
     7741 gtccaaaaaa atttaaattt ttttaacgat aatctaaaaa aaatctatga attgcttgtc
     7801 ttacttaata aatcgaatga aaaaaatatg gattttatca ataccttaaa accagatgaa
     7861 aatggggaag taaaacttag ttttgaggat ttaaaactaa aatttaaaca acttggagaa
     7921 aaaattacat ctttaaataa tcaaattgaa ttcacgcaaa gcttagaaga gagagaggct
     7981 tggagtgttc ttaaagagct tgataaaatg gatgaaaatt ttaataagta taaagttaat
     8041 tattctttag ctttattttc tatagtaaat taccgtttca ttatggaaaa atatggt
//
LOCUS       DAPIWQ010000071         8049 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.071, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000071 DAPIWQ010000000
VERSION     DAPIWQ010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8049
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.071"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            31..1281
                     /locus_tag="RJ267_001100"
     CDS             31..1281
                     /locus_tag="RJ267_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HDV7388966.1"
                     /translation="MNTPKWTSHDTRWVLSLFGTAIGAGVLLLPISAGLGGLIPLLVI
                     LVLAFPMTYLAHRNLCRFVLSSSNPKDDITFVAESYFGKGGGFLITLLYFFAILPILL
                     VYSANLTTTLLEFLINQFNFNADLTHAARWWVSFLIVGVLVLISILGENVVTKAMSFL
                     VFPFIIFLFIFSLLLIPQWNLSLFANVDFSVISTSNFWVTLWLVIPVMVFSFNHSPII
                     SSLACYCKKEYGGYAEPRARKIISLAIILMVFVVMFFVFSCALTFTPEDFASAKDQNI
                     NILTFIANKFPEVSLLAYVGPIVALVAISKSFLGHYLGSQEGLNGILYKASNGRIQGK
                     FAQTLTAIITFAIAWLVAYKNPSVIGIIEAIGGPVLAILLFLMPLYCIYRFDILARFR
                     NKFLDLFVLVMGIVAISAAIHDLL"
     gene            1296..2660
                     /locus_tag="RJ267_001101"
     CDS             1296..2660
                     /locus_tag="RJ267_001101"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HDV7388967.1"
                     /translation="MSNLSIFKIGVGPSSSHTLGPMLAGNLFCKKVAKKLDEIDRVGV
                     TLYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLS
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAELEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEICAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKVIEFLLTAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGANAFKACNAAEMAMEHHLGLTCDPVAGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSTPMVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(2668..3189)
                     /locus_tag="RJ267_001102"
     CDS             complement(2668..3189)
                     /locus_tag="RJ267_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388968.1"
                     /translation="MAFMNFSGFFYARNDLRLFKIEKKNELKSFFYKDYTLSSYKDDL
                     NLNNEIFFYQSLKEGLFKENDEILVSNLGKKIILFRNFTQNCDNFNETKLKQILLLFF
                     LLLASVFFASLAMINEFGAIDLLFLTICLLLLVMGVINLGLLFKQIRILKSFSKEEMK
                     EFLSQRMKKYTKV"
     gene            complement(3170..4180)
                     /gene="ribD"
                     /locus_tag="RJ267_001103"
     CDS             complement(3170..4180)
                     /gene="ribD"
                     /locus_tag="RJ267_001103"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HDV7388969.1"
                     /translation="MSNFKIQGRQMKEFYMNLALNEAWKYQFLTYPNPAVGCVILDKN
                     EKILAIKAHEKAGLAHAELNAIAHAFKSLRPEISLPKEANALHEFICKNHQGVFKDSI
                     AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDENKIASGGAEFLKKQGIEVEFDI
                     LKEEGKKLLKPFLKWQKGQFKLFKLALSMNGSPFGKIVSNELSRTYAHEIRAVIDLLV
                     VGGETIRKDCPILDARLCKAKAPNLCILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEA
                     KFLMYEGGENFLKIFKDEIDMFLIFQSSSLNDEKNVTIPLNFKPLYRNFLGSDTYGIY
                     EL"
     gene            complement(4385..4472)
                     /locus_tag="RJ267_001104"
     tRNA            complement(4385..4472)
                     /locus_tag="RJ267_001104"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4436..4438),aa:Ser,seq:tga)
     gene            complement(4494..4567)
                     /locus_tag="RJ267_001105"
     tRNA            complement(4494..4567)
                     /locus_tag="RJ267_001105"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4533..4535),aa:Cys,seq:gca)
     gene            complement(4586..4674)
                     /locus_tag="RJ267_001106"
     tRNA            complement(4586..4674)
                     /locus_tag="RJ267_001106"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4638..4640),aa:Leu,seq:taa)
     gene            complement(4684..4758)
                     /locus_tag="RJ267_001107"
     tRNA            complement(4684..4758)
                     /locus_tag="RJ267_001107"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4724..4726),aa:Gly,seq:gcc)
     gene            complement(4830..5582)
                     /locus_tag="RJ267_001108"
     CDS             complement(4830..5582)
                     /locus_tag="RJ267_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388970.1"
                     /translation="MLAFFKGLGVGFLCLLLFVAGVVFNVEFLGKKDSNHDLYFSRNI
                     EVSNTLKPDILYANINFWANENLSSKITLDNSEKAEITNTFNQILERSKKENFCSGAS
                     FSLEPNFSYKDGIQTPKGQRFDANLECEFKENQLADFNKLLNDINSIIAKNNFISVST
                     PAIQTKFSKDTLNNNKENLYKELLKTSYEYEKTYSLDLNKTCVLKNLQVNANTNIAPR
                     MLNAKSDNIELSSPIISKKEQILNAKALFICK"
     gene            5656..6675
                     /gene="mutY"
                     /locus_tag="RJ267_001109"
     CDS             5656..6675
                     /gene="mutY"
                     /locus_tag="RJ267_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HDV7388971.1"
                     /translation="MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDR
                     AYGVYISEIMLQQTQVKSVLERFYFPFLQKFPTLESLANANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFGAKLPKDVEDLKKLSGIGAYTAGAIACFGYDQKVSFVDGNIRRV
                     LSRLFALENPSMKELEKRAKELLNLNHAFDHNQALLDIGALVCVGKNAKCRICPLYDF
                     CQGKFHTELYPRAKKILYESLNLNLFLFEFNKKFAIQKSQDKLYKGMYNFPFFKEGEY
                     KLSKDMGFVGEFKHSYTKYKLNIKVYHQILNNENKNYEFKTLKELESTALSALSLKAL
                     KLIKL"
     gene            complement(6661..7918)
                     /locus_tag="RJ267_001110"
                     /pseudo
     CDS             complement(6661..7918)
                     /locus_tag="RJ267_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT         2645 a         1199 c         1368 g         2837 t
ORIGIN      
        1 gagatgtaat cttaaattta aggaagaata atgaatactc ctaaatggac tagtcacgat
       61 acaaggtggg ttttatctct ttttggaaca gctattggag ccggcgtact tttgttgcct
      121 attagtgctg ggcttggtgg attgatacct ttgttagtta tacttgtttt agcttttcct
      181 atgacttact tagctcatag aaatttatgt cgctttgtgc tttcaagttc taatccaaaa
      241 gatgatatta cttttgttgc agaaagttat tttggcaagg gcggtggatt tttaattaca
      301 cttttgtatt tttttgctat tttgcctatt ttattggttt atagtgctaa tcttacaaca
      361 actttgcttg agttcttaat caatcagttc aatttcaatg cagatcttac tcatgctgct
      421 cgttggtggg tgagtttttt gattgttgga gttttggttt tgatttctat tcttggtgaa
      481 aatgttgtaa caaaagcaat gagttttctt gtttttcctt ttattatatt tttatttatt
      541 ttttcattgc ttttaattcc acaatggaat ttatcgttat ttgcaaatgt tgatttttcc
      601 gtaatttcaa caagtaattt ttgggttact ttatggcttg ttattcctgt gatggtattt
      661 agttttaatc actctcctat catttcttca cttgcttgtt attgtaaaaa agaatatggt
      721 ggttatgctg aacctcgcgc tagaaaaatt atttctttgg caattattct tatggttttt
      781 gttgtaatgt tttttgtttt ttcttgtgct ttaaccttta caccagaaga ttttgcatca
      841 gcaaaagatc aaaatatcaa tattcttact tttatagcaa ataaatttcc tgaagtttct
      901 ttactagctt atgttggacc tattgttgca cttgtggcta ttagcaaaag tttcttaggg
      961 cattatcttg gttctcaaga aggcttaaat ggtattttat ataaagcaag taatggtaga
     1021 attcaaggta aattcgctca aactttaaca gcgatcatta cctttgctat cgcgtggctt
     1081 gttgcgtata aaaatccaag tgttatagga attatcgagg ctattggtgg tcctgttttg
     1141 gctattttgc ttttcttaat gccgctttat tgtatttatc gttttgatat tttggcaagg
     1201 tttcgtaata aatttttaga tctttttgtt ttggtaatgg ggatagttgc aatttctgct
     1261 gcaattcatg atcttttata aattaaggat aaaaaatgag taatttaagc atttttaaaa
     1321 taggtgttgg cccttcttct tctcatactt tagggcctat gcttgctgga aatttatttt
     1381 gtaaaaaagt tgctaaaaag cttgatgaaa ttgatagagt tggggttact ctttatggtt
     1441 ctttgtcgtt aacaggcaaa ggacacttga gtgataaggc tgtgatttgg gggttaaatg
     1501 gcttagaagc taaaaattta agtgcggcaa tacaagatga agtaaataaa aatgctattg
     1561 aaaatgctca aattgatttt tgtggcgaga aaaaacttag ttttaattat gaaaaagatt
     1621 tgatattttc taaagatttt ttacctttac atgagaatgg tatgaaaatt aaagcttatg
     1681 attgtaaagg tgggttagtt gatgaggaaa cttattattc tgtaggtgga ggctttgttt
     1741 taacagctgc ggaattagaa aaaaaaggta aaaattctaa ccaaaataaa aagaaaaaac
     1801 tagatataga gcttaataac gctaaagaag ctttagagct ttgcgataaa agagattggg
     1861 atttggcaga gctttcttat cgttatgaat tgcaatttca cactaaagag gaaatttgtg
     1921 cttattgtct tgaaatttgg gaagtgatgc aagaagtgta ttataatggt acgcacccga
     1981 atgaagatta tttgcctgga aaacttcatt taaagcgtag agctaaagga cttaaagaaa
     2041 gagtagcgat gacagctgat cctatgggta ttatcgattt tatttcttta tatgctattg
     2101 cgattgctga agaaaatgct agcggagcaa aagtcgtaac cgcaccaaca aatggagcat
     2161 gtgctgttat ccctgctgtt atgctttatc ttaaaaatca tactataggt tttagtgatg
     2221 aaaaggttat agagttttta ttaacagcaa tgcttatagg ttctttttat aagaaaaatg
     2281 caagtattag cggagcagaa gcaggttgtc aagcagaaat tggtagtgct agttctatgg
     2341 cagctgcggc tatggcaaca gttttaggag ctaatgcttt taaagcatgt aatgctgctg
     2401 aaatggcaat ggaacatcat ctaggtctaa cttgcgatcc agttgcagga cttgtgcaaa
     2461 ttccttgcat agaaagaaat gcctttggag ccattaaggc cataagtgct gctagaatgg
     2521 caatgacacg caaatccact cctatggtaa gccttgatga ggttatagaa accatgtatg
     2581 aaacaggaaa agatatgaat tataaatata aagaaacttc tttaggtggt cttgctacaa
     2641 atttaaaaac agtatgctaa agtgttttta cactttagtg tattttttca ttctttgact
     2701 taaaaattct ttcatttctt ctttggaaaa acttttaaga atgcgaattt gcttaaaaag
     2761 caagccaaga ttgattactc ccatcactaa aagcaataag caaatcgtta aaaaaagaag
     2821 atctatggct ccaaattcat taatcatagc caaacttgca aaaaatacac tcgctaataa
     2881 caaaaaaaat aaaagcaata tttgttttaa ttttgtctca ttaaaattat cgcaattttg
     2941 agtgaaattt ctaaaaagta tgatcttttt acccaaattt gaaactaaaa tttcatcatt
     3001 ttccttaaat aagccttctt ttaaactttg ataaaaaaag atttcattgt ttaaatttaa
     3061 atcatctttg tagcttgata gggtgtagtc cttgtaaaaa aaggatttta attcattttt
     3121 cttttctatt ttaaataatc ttaaatcatt tctcgcataa aaaaatccac taaagttcat
     3181 aaatgccata agtatcactc cctaaaaaat tcctgtaaag tggcttgaaa tttaaaggta
     3241 ttgtaacatt tttttcatca tttaaacttg aactttggaa aatcaaaaac atatctattt
     3301 catctttaaa gattttgaga aaattttctc caccctcata cattaaaaat ttagcttcac
     3361 ttggaatttg ggtataaatt tggcggtttg gaactttaaa taaagggata tttttatcaa
     3421 aattatctat attttgacgg cttaagatac aaagattagg cgcttttgct ttgcaaagcc
     3481 tagcatctaa tatagggcaa tcttttctta tggtttctcc accgactaca agcaaatcaa
     3541 tcaccgctct aatttcatgt gcataagtgc gacttagctc attgcttacg attttgccaa
     3601 aaggtgagcc gttcatagaa agggctaatt taaaaagttt aaattgccct ttttgccatt
     3661 ttaaaaaagg ttttaaaagt ttttttcctt cttctttaag tatgtcaaat tcaacctcta
     3721 taccttgttt ttttaaaaat tcagccccac cgcttgcgat tttattttca tctttaacgc
     3781 tgatgaaaat ttttttaaaa cctagctcgc taaagagttt tgcacaagga ggtgtttttc
     3841 cttgatgaga gcaaggctca agcgttacaa aagctatgct atctttaaat acaccttgat
     3901 ggtttttgca aataaactca tgtaaggcgt ttgcttcttt gggcaatgaa atttcaggtc
     3961 ttaagctttt aaaagcatga gctatggcat taagttccgc atgagctaat ccagcttttt
     4021 catgagcttt tatggctaaa attttttcat ttttatctaa gattacacag cctacagccg
     4081 gatttggata ggttaaaaac tgatatttcc aagcctcatt taaagctaaa ttcatataaa
     4141 attctttcat ttgcctacct tgtattttaa aatttgacat atttttaaaa ttttatattt
     4201 ttgttttaag ataacaaatt ctaaatttcc atttgtattt cttattttta attatattag
     4261 ccatagtttt tctaagtttt tttaggatat aacaaaaata gtaagaccga agtattattt
     4321 ttcatttgta gtatccttta taatttcagg aataatataa gcttgataaa ctagaaagtc
     4381 ttggtggccg ggagaaaggg attcgaaccc ctggaggtgt gaccctcaac ggttttcaag
     4441 accgccgctt tcgaccactc agccatctcc cgataaagta aagttttgcc ttttggaggc
     4501 gacatccgga ttcgaaccgg agatcaaggc tttgcaggcc catgccttac cgcttggcta
     4561 tgtcgccctg ataatgttga aaaagtggtg cccgaggccg gacttgaacc ggcacggaag
     4621 aaaaattccg agggatttta agtcccttgt gtctaccaat tccaccaccc gggcgggtga
     4681 ttatggagcg ggaaacgaga ttcgaactcg cgaccccaac cttggcaagg ttgtgctcta
     4741 cccctgagct attcccgcat aaatttctga aagaattgaa gataaaagta tagcaaaata
     4801 aacttaaaag gagtttattt tgctataagt tatttgcaaa taaataaagc ttttgcattt
     4861 aaaatttgtt cttttttgct gataattgga gatgaaagtt ctatattgtc agatttcgca
     4921 tttagcattc taggtgcgat attggtattg gcatttactt gtaaattttt caatacacaa
     4981 gttttattaa gatctaaaga gtaagttttt tcatattcgt atgatgtttt taaaagctct
     5041 ttgtagagat tttctttgtt gttgtttagt gtatcttttg aaaattttgt ttgtatggct
     5101 ggtgttgaaa cgctgatgaa attattttta gctatgatag aattgatgtc atttaaaagc
     5161 ttgttaaaat ctgcaagttg gttttcttta aattcacatt ctaaattcgc atcaaatctt
     5221 tgaccttttg gagtttgtat accatcttta taggaaaaat taggttctaa agaaaaactt
     5281 gctccgctac aaaaattttc tttttttgag cgttctaaaa tttgattgaa agtatttgtg
     5341 atttcagctt tttcactatt gtctaatgta atttttgaac ttaaattttc atttgcccaa
     5401 aaattaatat ttgcatataa aatatcgggt tttagcgtat tgcttacttc tatatttctt
     5461 gaaaaatata aatcatgatt agagtctttt ttgcctaaaa attctacatt aaaaactact
     5521 cctgcaacaa aaagtaataa acataaaaaa cctacaccta aacctttaaa aaaagctaac
     5581 atggatatcc ttaataattt aatttgagct aattttagca aaaaatttta aaattttttt
     5641 gttatactct catttatgca aaaaaaagag cttgaaaaac tacaagaaaa tttacttctt
     5701 tggtatgaaa aaaatggacg caaaactttg ccttggcgta atttacaaag tcaaaattgt
     5761 gatgaaagtt taaagcatat tgatagagct tatggggttt atatcagcga aattatgctt
     5821 cagcaaactc aagttaaatc agttttagaa aggttttatt tccccttttt gcaaaaattt
     5881 cctactttag aaagtttggc taatgctaat gaagacgagc ttttaaaggc ttggcaagga
     5941 cttggttatt acactcgtgc tagaaattta aaaaaggcag ccttagaatg cgtggataag
     6001 tttggggcta aattacccaa agatgttgag gatctaaaaa aattaagtgg tataggagct
     6061 tatacagcag gcgctatagc ttgttttggc tacgatcaaa aggtttcttt tgttgatggc
     6121 aatatacgcc gtgtgctttc tcgtcttttt gctttggaaa atcctagcat gaaagaactt
     6181 gaaaaaagag ctaaagagct tttaaattta aatcatgcct ttgatcacaa ccaagctttg
     6241 cttgatatag gggctttggt ttgtgtgggt aaaaatgcaa agtgtaggat ttgtcctttg
     6301 tatgattttt gtcaaggcaa atttcataca gagctttatc caagagctaa aaaaatactt
     6361 tatgagagtt taaatttaaa tctttttttg tttgaattta ataaaaaatt tgcgatacag
     6421 aaaagccaag ataagcttta taagggtatg tataattttc ctttttttaa agaaggagag
     6481 tataaacttt ctaaagatat gggttttgta ggggagttta agcacagcta tactaagtat
     6541 aaacttaata tcaaggttta tcatcaaatt ttaaacaatg aaaataaaaa ttatgaattt
     6601 aaaaccttaa aagagttaga aagtaccgca ctttcggcac tttctttaaa agcgttaaaa
     6661 ttaattaagc tctgattttt taggcaaaca taaagtagct ataagcatga tgattgtaaa
     6721 aatagctata tatataaaaa agccattttc tatacctgca tttttaaatt gtaaagcaac
     6781 ccaaggagca gatcctccaa aaacagcatt tgaaatagca taacctaaac ctgtccctaa
     6841 agctcttaca tgttcaggaa aaagttttgc tttaaaaatc ccagcaactg aagtataaaa
     6901 acttaaaata acaaacaata ataccaccaa cataaatgtc aaagaagggt tattttgtgc
     6961 gttattggct ataagtgaaa aaataggata aattcctacc aatgccaaaa tacaaaatac
     7021 aattaaagat cgtttgtgac ctattttatc tcctatatat ccaaaaagag gttgaatgat
     7081 cattagtata aataaagcac ctaagaaaag attattaaca agcattttat ccatacccgt
     7141 attttccata aaagttttag tataagttgt aatggtgtaa aaagctaaag aacctccaga
     7201 ggtaacccca agtaccatta aaaaaggttt ccaagatttg cataatgcct ttaaagtacc
     7261 acgatcttca tgctggtgaa gttttgtagc actttcattc atcatttttc ttacaaaaag
     7321 cgagcctagt gctaaaattc cgcctattac aaaaagtatt ctccaagcat aatctttcat
     7381 atcatcaatg ctaaaaaata aaaacattat actaatgctt gcaacggcca aaagttgacc
     7441 acctattagg gttacatact gaaaagatga gtaaaaaccg cgttttcctt ccgtagcaag
     7501 ttctgaaaga taagtagctg ctatgccata ctccccgcct acactaagac cttgaataag
     7561 tcttgctatt aaaagcaaga taatagcaag atcgcccact gtatctttgc ttggtaaggc
     7621 tgctatcata aaagagccta aagccattaa aaccactgat ataaccatag attttacgac
     7681 ctactttatc agctaaagag ccaaaaagcc aagagcctat aggacgcata aaaaatcctg
     7741 ctgcaaaaac cccaaaggca ttgatttgct ggataacagg attatctgaa gttgaaaaag
     7801 tatgagcaaa ataagttgct gtaaaagcat agatataaaa atcaaaccac tctactaaat
     7861 ttccgctact tgcagcaata atagagcgaa tttttttcgt gcgagtaagc tcttgcataa
     7921 acccttcctt aattttagat ttttatttaa gtatagtgtg atttttgttt aatatattta
     7981 aaaataaaga agagaaataa aaaagataaa aatatcgata aaaatgttac atattttaat
     8041 aaatttcat
//
LOCUS       DAPIWQ010000072         8026 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.072, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000072 DAPIWQ010000000
VERSION     DAPIWQ010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8026)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8026)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8026
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.072"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            117..503
                     /locus_tag="RJ267_001111"
     CDS             117..503
                     /locus_tag="RJ267_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HDV7388972.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKAGAAK"
     gene            573..1043
                     /gene="rpsG"
                     /locus_tag="RJ267_001112"
     CDS             573..1043
                     /gene="rpsG"
                     /locus_tag="RJ267_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HDV7388973.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            1056..3131
                     /gene="fusA"
                     /locus_tag="RJ267_001113"
     CDS             1056..3131
                     /gene="fusA"
                     /locus_tag="RJ267_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HDV7388974.1"
                     /translation="MSRSTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLASEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            3160..3236
                     /locus_tag="RJ267_001114"
     tRNA            3160..3236
                     /locus_tag="RJ267_001114"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3194..3196,aa:Arg,seq:cct)
     gene            3254..3403
                     /locus_tag="RJ267_001115"
     CDS             3254..3403
                     /locus_tag="RJ267_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388975.1"
                     /translation="MIKIAFFITFVISFLAAQSPVNFKEDNNITKERNIFKEQSPKRI
                     KIPTH"
     gene            3409..4110
                     /locus_tag="RJ267_001116"
     CDS             3409..4110
                     /locus_tag="RJ267_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HDV7388976.1"
                     /translation="MSDLITLAQLSQGYRYNSDSLILADFILKQGIKGAVFDVGAGCG
                     IIGILLKKNIANLSLSLIDIQKENIKLIEKNLKSNKIQGDIFHDDFNQFQIIKKFDFI
                     VCNPPFYRQGAYKSEDQHKAISKFQEFLPLHSFLAKTNSMLKPNGTLYFCYEALALDE
                     ICFILKDMKMKITKLCFVHTHQNKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQ
                     MQEIHLRFRLKSYDI"
     gene            4100..4474
                     /locus_tag="RJ267_001117"
     CDS             4100..4474
                     /locus_tag="RJ267_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HDV7388977.1"
                     /translation="MIFDKNFSYAFDENACEKCGGKCCTGESGNIFASKEELEALRKH
                     LNLESKEFAEKYLRKVGFKMSFKEVECEDGFACIFFDTQKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQKELEKECIGICYLS"
     gene            4447..5724
                     /locus_tag="RJ267_001118"
     CDS             4447..5724
                     /locus_tag="RJ267_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HDV7388978.1"
                     /translation="MYRYLLFVLAAFFLAACGSSKINVVYPDYTKYKSNDFDLRVMKA
                     YNYEYYKQYKEARDEFLSLYQDYNNTNFLENAFLLSLANNLDKQAELDNLAKPYLNQN
                     DNLKRLSALYALNSNDINNAQKLMKELLTKKDSDPRNLELYGDILVKKNDLKNATKYY
                     RSAYNQVQNEEILFKLIGIYAILNDTLNIKNVLEFSRKTNGCTLKTCVLLAKIYFDEK
                     NIEALKSIYKELYQLTKNKSFVLALVELLNSQGKTEEALKISLQYDLDDDIKLALYQN
                     LKRFDDAKKMSLALYHKTKNKEYLLRAAVFEFEAANEAKKITPKVIDSVKEKFEQAID
                     KDSNALYLNYYGYLLIDYDLDVKKGIELVKLALEKDPQNLYYLDSLAWGYYKLGDCKQ
                     AWEILKQTLDDKEFANSDESKAHIKAIKACIKP"
     gene            5721..6497
                     /gene="trpC"
                     /locus_tag="RJ267_001119"
     CDS             5721..6497
                     /gene="trpC"
                     /locus_tag="RJ267_001119"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HDV7388979.1"
                     /translation="MILDKIFEKTKEDLKERKLKLPYDMLGRSLASNPFFPKDVIKAL
                     KRVEKEVKIIAEVKKASPSKGVIREDFDPLSIALNYEKNKAAAISVLTEPHFFKGSLE
                     YLSLIRRYTQIPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHL
                     GLEALVEIHDKEDLSKAIFAGADIIGINHRNLEDFTMDMSLCEKLIPQIPNSKIIIAE
                     SGLENKEFLEHLQNLGVDAFLIGEYFMREKDEGKALKALL"
     gene            6507..6992
                     /locus_tag="RJ267_001120"
     CDS             6507..6992
                     /locus_tag="RJ267_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HDV7388980.1"
                     /translation="MQYLYAPWRSEYFEKVKSICPFCDCANKIKSDEELGVIFRAKHC
                     FGVMNRYPYSAGHFMVIPYIHEEHIENLSDEIWQEMSYFVRLGVKILKEQIHANGVNI
                     GMNLSKDAGAGIAFHCHYHLVPRWSGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNA
                     Q"
     gene            6982..7980
                     /gene="mnmH"
                     /locus_tag="RJ267_001121"
     CDS             6982..7980
                     /gene="mnmH"
                     /locus_tag="RJ267_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HDV7388981.1"
                     /translation="MLSEVEFVEFQKENFSLLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKAMGASYICQNTTKHILEITQNFRIGEKVGIYCSRGGLRSKS
                     IAVILSELGFRVVRLKGGFKAYRTFVTHYFENEINFDFFALCGNTGCGKTELLEQLPQ
                     AINLEKMANHLGSSFGDILGKQPTQKAFEAELFHNIQNLENFAFIESESRKIGDIILP
                     LKFYEKMQKAFKIYCFCSLENRVRRIQKIYQEKMTPLKFQQCVQKISPYISLNLRQDL
                     LQSYERKEWQKLIVMLLEYYDKTYKKPDKIDLELNTDDILKAKEELLDHFKVQLLF"
BASE COUNT         2878 a         1040 c         1550 g         2558 t
ORIGIN      
        1 taggtttatt ttataaaaat ttttaaaagc atttaaatta tttctagttt atatttttgt
       61 aagtaaattt tagatatcat ccaaagttta ttacattttt aaagaaagga attattgtgc
      121 ctaccataaa tcaattggtt agaaaagagc gcaaaaaagt tttagaaaaa tctaaatctc
      181 cagcgcttaa aaattgtcca caaagaaggg gagtttgcac tagggtttat actacaacac
      241 ctaaaaaacc aaactcagcg ttaagaaaag ttgccaaagt aagacttact agtggctttg
      301 aagtgatcag ctatatcggc ggtgaaggtc ataacttgca agaacacagc attgttttag
      361 tgcgtggtgg tagggtaaaa gacttaccag gggttaaata tcacatcgtt cgtggtgctc
      421 ttgatacagc aggtgttgca aaaagaacag tttctcgttc taaatatggt gctaaacgtc
      481 ctaaagcagg cgctgcaaaa taatcattca tacagacaaa tccgttagat ttgattttgt
      541 ttgagtaaaa tttaaaattt gaaggaaaaa taatgagaag aagaaaagct ccggtaagag
      601 aagtcttgcc tgatccgatt tatggtaata aagtaatcac aaaatttatt aattctttaa
      661 tgtatgatgg taaaaaaagc acagctacaa caattatgta tggtgctttg gaagctattg
      721 ataaaaaagg tggcgagaaa aaaggtattg atatttttaa tgatgcgatt gaaaatatta
      781 agcctttatt agaagtaaaa tctcgtcgtg taggtggtgc aacttatcaa gttccagttg
      841 aagttcgtcc tgctagacaa caagctttgg cgattcgttg gattatttct tttgcaagaa
      901 aaagaagcga aagaactatg attgataaac ttgcagctga gcttttagat gcagcaaata
      961 gcaaaggtgc ttcatttaag aagaaagaag atacttataa aatggctgaa gcaaataaag
     1021 catttgctca ctatcgttgg taagaaggag tgtgtatgtc aagaagtact cctttaaaaa
     1081 aagttagaaa tatcggtatt gctgctcaca ttgatgcggg taaaacgact acatctgaaa
     1141 gaattctttt ctttacaggt atgagtcata aaatcggtga agttcatgat ggtgctgcaa
     1201 ctatggactg gatggaacaa gagaaagagc gcgggattac tatcacttct gcggctacaa
     1261 cttgtttttg gaaagatcat caaatcaatc ttattgacac tccaggccac gtggatttta
     1321 caattgaagt tgaaagatct atgcgtgttc ttgatggtgc tgttgcggta ttttgttcag
     1381 tgggtggggt gcagcctcaa agtgaaacag tttggagaca agcaaataaa tatggtgttc
     1441 caagaatagt atttgtaaac aaaatggata gaatcggtgc aaatttctac aatgtagaag
     1501 atcaaattcg caaccgttta aaagctaatc cagttccact tcaaattcca atcggtgctg
     1561 aggataattt taaaggcgta atcgatcttg taactatgaa agctttagtt tgggaagatg
     1621 atactaagcc aacggattat gtagaaaaag aaattccagc tgaacttaaa gaaaaggcag
     1681 aagaatatcg cacaaaaatg atagaagcag tttctgaaac ttcagatgag ttgatggaaa
     1741 aatatttagg cggagaagaa ttaagccttg aagagattaa aacagggatt aaagcaggat
     1801 gtttaagtct ttctatcgtt cctatgcttt gcggtacagc gtttaaaaat aaaggggttc
     1861 aacctttact tgatgctgtt gtggcttatt taccagctcc tgatgaagtg gcaaatatca
     1921 agggtgaata tgaagatggc acagaagttt ctgtaaaatc aactgatgat ggcgagtttg
     1981 caggacttgc atttaaaatt atgacagatc catttgtagg acaacttact ttcgtgcgtg
     2041 tttatcgcgg ttgtttagaa agtggttctt atgcttataa ctcaactaaa gataaaaaag
     2101 aaagaattgg tcgtttgtta aaaatgcact ctaacaaaag agaagagatt aaagtgcttt
     2161 acgcaggcga aattggtgct gttgtaggac ttaaagatac tttaacaggg gatactcttg
     2221 caagtgaaaa agataaggta atccttgaaa gaatggattt tccagatcca gttatttctg
     2281 ttgcagttga gccaaaaact aaagcagatc aagaaaaaat gtctattgct ttaaataaat
     2341 tagcacaaga agatccaagt tttagagttt ctacagatga agaaagtggc caaactatca
     2401 tttcaggtat gggtgagttg caccttgaaa ttatcgttga tagaatgctt cgtgaattta
     2461 aagttgaagc tgaagtaggt caaccacaag ttgcttatcg cgaaactatt agaaaaactg
     2521 ttgaacaaga atacaaatac gctaaacaat caggtggtcg tggtcagtat ggacatgtat
     2581 tcttacgcct tgaaccactt gagccaggta gtggatatga atttgttaat gatatcaaag
     2641 gtggagtaat tccaaaagaa tacattcctg cagttgataa aggtgttcaa gaagcattac
     2701 aaaatggtgt tttagcaggt tatcctgtgg aagatgttaa agtaactgtt tatgatggaa
     2761 gttatcacga ggtggattca tctgagatgg cgtttaaact tgctgcttct atgggcttta
     2821 aagaaggtgc tagaaaagca ggtgctgtga tcttagagcc tatgatgaaa gttgaagtag
     2881 aaactcccga agattatatg ggtgatgtta ttggagatct taacaaacgc cgtggtcaag
     2941 taaatagcat ggatgagcgt ggtggaaata aaatcatcac agcattttgt cctttggctg
     3001 aaatgtttgg ttattctact gatcttagaa gtcaaactca aggtcgtgcg acttattcta
     3061 tggaatttga tcactatgat gaagttccta aaaatgttgc agatgaaatc atcaaaaaaa
     3121 gaaacggtta aatttttagc gggatttttc ccgctttctg tcctcgtagc tcagcaggat
     3181 agagcgcaaa attcctaatt ttgaggccgt gagttcgaat ctcgccgtgg acaccatttt
     3241 atggggtgtt attatgataa aaattgcttt ttttataact tttgtaattt cttttttggc
     3301 agcacaaagc ccagtaaatt ttaaagaaga taataatata acaaaagaac gaaatatatt
     3361 taaagaacaa tctccaaaac gcattaaaat tccaacgcat taaaatatat gtcagatctg
     3421 attacgctag cacaattatc acaagggtat cgttacaata gtgattcttt aattttagct
     3481 gattttattt taaaacaagg aattaaaggc gctgtttttg atgtaggtgc gggctgtggt
     3541 atcataggta ttttacttaa aaaaaatatt gcaaatttaa gtttatcttt gattgatatt
     3601 caaaaagaaa atataaaatt gattgaaaaa aatttaaaat ccaacaaaat acaaggcgat
     3661 atttttcatg atgattttaa tcaatttcaa atcataaaaa aatttgactt catagtctgc
     3721 aatcctccat tttatagaca aggagcttac aagagtgaag atcagcataa agctataagt
     3781 aaatttcagg aatttttacc cttgcatagc tttttagcta aaacaaattc tatgcttaag
     3841 ccaaatggta ctttgtattt ttgctatgaa gctttagctt tagatgaaat ttgttttatt
     3901 ttaaaagata tgaaaatgaa aataacaaag ctttgctttg tacatacaca tcaaaacaaa
     3961 aaagcaagac ttgttttgat acaggtaaaa aaaggttcaa aatcgccttg tgagatttta
     4021 cctccttttt ttgtatatga aaatgaaatt ttaagcaaac aaatgcaaga aattcactta
     4081 agatttaggt taaaaagtta tgatatttga taaaaatttt tcttatgctt ttgatgaaaa
     4141 tgcttgtgag aaatgcggtg gaaagtgttg cactggagaa agtggcaata tttttgcgag
     4201 caaggaagaa ttagaagcat taagaaagca tttaaattta gaaagcaaag aatttgctga
     4261 aaaatacttg agaaaagtgg gctttaaaat gagttttaag gaggtcgaat gtgaagatgg
     4321 ctttgcttgc attttttttg atactcaaaa aagaaattgt agtatctacg attttcgtcc
     4381 aaaacaatgc agaacttttc cattttggga atattttaaa acacatcaaa aggaattaga
     4441 aaaagaatgt ataggtattt gttatttgtc ttagcagcct tttttttggc agcttgtgga
     4501 agttcaaaaa tcaatgttgt ttatcctgat tatacaaaat ataaaagcaa tgattttgat
     4561 ttaagggtta tgaaggctta taattatgag tattataaac aatacaaaga agccagagat
     4621 gaatttttaa gtctttatca agattataat aatactaatt ttttagaaaa tgcattttta
     4681 ctttctttag caaacaatct tgacaagcaa gcagagttag ataatctagc aaagccttat
     4741 ttaaatcaaa atgacaatct taagcgactt agtgctcttt atgctttaaa ttcaaatgat
     4801 atcaacaatg ctcaaaaact tatgaaagag cttttaacaa aaaaggatag tgatcctaga
     4861 aatttagagc tttacggaga tattttggtt aaaaaaaatg atttaaaaaa tgctacaaaa
     4921 tactatagat ctgcttataa tcaagtgcaa aatgaagaaa ttttatttaa actcatagga
     4981 atttatgcga ttttgaatga tactttaaat attaaaaatg ttttagaatt ttcaagaaaa
     5041 accaatggtt gtactctcaa aacttgcgtc ttgcttgcta aaatttattt tgatgaaaaa
     5101 aatatcgaag ctttaaaaag tatatataaa gagctttatc aacttaccaa aaataaaagt
     5161 tttgtattgg ctttagttga gcttttaaat tctcaaggca aaacagaaga agctttaaaa
     5221 atttctttgc agtatgattt agatgatgac attaaactcg ctttgtatca gaatttaaaa
     5281 cgctttgatg atgctaaaaa aatgagttta gctctttatc ataaaacaaa aaataaagaa
     5341 tatcttctac gagcggcagt ttttgaattt gaagctgcaa atgaagctaa aaaaatcact
     5401 ccaaaagtaa ttgattctgt aaaagaaaaa ttcgaacagg ctatcgataa agatagcaat
     5461 gctttgtatt taaactacta tggatatttg cttatagatt atgatttaga tgttaaaaaa
     5521 ggtatagagc ttgtgaaact tgccttagaa aaagatccac agaatttgta ttatttagat
     5581 tctttagctt gggggtatta taaactaggc gattgtaagc aagcatggga aattttaaaa
     5641 caaacattag atgataaaga atttgcaaat tctgatgaga gcaaagctca tataaaagcg
     5701 ataaaggcgt gtataaaacc atgatattgg ataaaatttt tgaaaaaaca aaagaagatt
     5761 taaaagaacg caaactaaaa cttccttatg atatgttagg gcgttcttta gcttcaaatc
     5821 ctttctttcc aaaagatgtg attaaggctt taaaaagagt agaaaaagaa gttaaaatca
     5881 tagcagaagt aaaaaaagca agccctagca agggagtcat tagagaagac tttgatcctt
     5941 tgagtatcgc tttaaattat gagaagaaca aagctgcggc gatttctgtt ttaactgagc
     6001 cgcatttttt taaaggttct ttagaatact taagtcttat acgccgttat acgcaaattc
     6061 ctttacttag aaaagatttt atctttgatg agtatcaaat tttagaagct ttggtttatg
     6121 gggcggattt tgtattatta atcgctaaaa tgctaagcat gaaagagctt aaaaaactgc
     6181 ttgagtttgc aagacattta ggtcttgagg ctttggttga aatccatgat aaagaggatt
     6241 tgagtaaggc tatttttgct ggagcggata ttatcggtat caatcatcgt aatttagagg
     6301 attttactat ggatatgagt ttgtgcgaaa aacttatccc acaaatccca aattcaaaaa
     6361 tcatcatcgc agaaagtggt ttagaaaata aagaattttt agagcatttg caaaatttag
     6421 gcgttgatgc ttttttaatc ggcgaatatt ttatgcgcga aaaagatgaa ggaaaggctt
     6481 taaaagcttt gctttaagga gggaaaatgc agtatttgta tgcaccatgg cggagtgagt
     6541 attttgaaaa agtaaaaagc atttgtccat tttgtgattg tgctaataag atcaaaagcg
     6601 atgaagaatt aggcgtgatt tttagagcaa agcattgttt tggagtgatg aaccgctatc
     6661 cttattctgc agggcatttt atggtgattc cttatataca tgaagagcat atagaaaatt
     6721 taagtgatga aatttggcaa gaaatgagtt attttgtgcg tttgggggta aaaattttaa
     6781 aagagcaaat tcatgcaaat ggagtgaata tcggtatgaa tttaagcaag gatgcaggag
     6841 ctggcatagc ttttcattgt cattatcatc tagtaccacg ctggtcagga gatacaaatt
     6901 ttatcacaac cataggagaa actagggttt gtggcactaa tatagagcaa gtttatcaaa
     6961 aacttgtttt ggcttttaaa aatgctcagt gaagttgaat ttgtagagtt tcaaaaagaa
     7021 aatttctctc ttttaatcga tgcaagaagc cctagagaat ttttgcattc tcacttgata
     7081 ggagctttaa atttttatgc actcaatgat gaagaatatc aagaaatagg aacaatttat
     7141 aagaaaaatc aagctttagc taaggctatg ggtgcgagtt atatttgtca aaataccact
     7201 aagcatatat tagaaatcac tcaaaatttt cgcataggag aaaaggtggg gatttattgt
     7261 tctcgtgggg gtttgcgttc aaagtctatc gcagtgattt taagtgagct tggctttagg
     7321 gtggtgcgtt taaaaggtgg gtttaaagct tatagaactt ttgtaacgca ttatttcgaa
     7381 aatgaaataa attttgattt ttttgctctt tgtggtaata caggttgtgg aaaaacagag
     7441 cttttagaac aactcccaca agctataaat ttagaaaaaa tggcaaatca tttaggctcg
     7501 tcttttggtg atattttagg aaaacaacct acgcaaaaag cttttgaagc agaacttttt
     7561 cacaatattc aaaatttaga aaattttgct ttcatagaaa gcgaaagtcg caaaataggg
     7621 gatattatct tacctttgaa attttatgaa aaaatgcaaa aggcttttaa aatttattgt
     7681 ttttgttctt tggaaaatcg cgttagaaga atacaaaaaa tttatcaaga aaaaatgact
     7741 cctttgaaat ttcaacaatg tgtgcaaaaa atcagtcctt atatcagctt aaatttacgc
     7801 caagatttgc ttcaaagtta tgagagaaaa gaatggcaaa agcttattgt tatgcttttg
     7861 gagtattatg ataaaactta taaaaaacca gataagattg atcttgagtt aaatactgat
     7921 gatattttaa aagctaaaga agagctttta gatcatttta aagtacaatt acttttttaa
     7981 tatcagataa ttttattaaa taatcaaatt ttttcttcat catctt
//
LOCUS       DAPIWQ010000073         7997 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.073, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000073 DAPIWQ010000000
VERSION     DAPIWQ010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7997)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7997)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7997
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.073"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..358
                     /locus_tag="RJ267_001122"
     CDS             <1..358
                     /locus_tag="RJ267_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HDV7388982.1"
                     /translation="LSHFQSGLMMTQIFIKMGYLLIFVSVVNFLYEIYSLIKDEMKFQ
                     IKFSKFMLSLLILILSLIFVFYFTNTIIELQNLGENATKTQEFISIHNASEVVIKIIL
                     IMQVFLYFLSFKIAKK"
     gene            397..1146
                     /gene="flaC"
                     /locus_tag="RJ267_001123"
     CDS             397..1146
                     /gene="flaC"
                     /locus_tag="RJ267_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HDV7388983.1"
                     /translation="MMISDATMMQQNYYLNNAQKASDKALENIAAVRAISGVDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDS
                     QKGMLRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATDGLSID
                     SQDSITNFMDQLGSLRSEIGSGINAITSNINASVQNSINSKAAENNLLNNDMAKNVND
                     FNANYLKENAAAFVAAQSNMQLQSKIANLLQ"
     gene            1181..1813
                     /locus_tag="RJ267_001124"
     CDS             1181..1813
                     /locus_tag="RJ267_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HDV7388984.1"
                     /translation="MTLEQILEKTKNVRLVAASKYVDASIIEKLFDQGIVEFGENQVQ
                     ALAQKKENLDEKKLDIKWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDY
                     KLNTLLEINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKENIIK
                     SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK"
     gene            complement(1825..5427)
                     /gene="dnaE"
                     /locus_tag="RJ267_001125"
     CDS             complement(1825..5427)
                     /gene="dnaE"
                     /locus_tag="RJ267_001125"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HDV7388985.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMKAQGLKPIIGIEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEDYSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGY
                     EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIA
                     QKCNLELNLGNPTPPNFKFTREYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEER
                     LKFIDESKHEEYKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEELKITLDAAYEKEPKIKE
                     FIDRHPKGLEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQ
                     SGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     SIEYPFDSLEKVLEPTYGVIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIREFSALEQDGKDAIIYGL
                     GAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT
                     RKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPKNEEFEVMEKLGY
                     EKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGEILSIGKIEDFKSMMSKNN
                     KRYGRIEILDYYSSFDATVFESNVEEIENIIKDENLKNNAYGFVLGFKAEGGEKPSFF
                     LKAIKDLQSLEDGEIKAIKKFGAKKDFKNKEENHFTAEPKEFEKNIIELDLTRLNREL
                     IYEIHEIARNAHNPNEKNNKKLVLKVISAGSCLLYHTDFIISDSIVEEISNKYA"
     gene            5655..5861
                     /locus_tag="RJ267_001126"
                     /pseudo
     CDS             5655..5861
                     /locus_tag="RJ267_001126"
                     /inference="COORDINATES: protein motif:HMM:TIGR02174.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SelT/SelW/SelH family protein"
     gene            complement(5874..6203)
                     /locus_tag="RJ267_001127"
     CDS             complement(5874..6203)
                     /locus_tag="RJ267_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HDV7388986.1"
                     /translation="MKLYGIKNCNSVKKAMDALTQKGIVFDFMDIKKINQDILYTWLK
                     QKSFEELINTAGLTSKKLGLNKEKVKNLNEKELEKIVLENPSCIKRPIIEYEQNIYIG
                     KEYEKML"
     gene            complement(6200..7540)
                     /locus_tag="RJ267_001128"
     CDS             complement(6200..7540)
                     /locus_tag="RJ267_001128"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HDV7388987.1"
                     /translation="MWAKNSWKNYPIKQQPIYPDQEEMNRVLARLEKLPPLVFAGEVR
                     NLQKSLARVCKKEAFLLQGGDCAESFENFGAVNIRDMFKILLQMAIVLTFAGGCPVIK
                     IGRIAGQFAKPRSSDFEELDGISLPSYRGDIINGFEFSEQARIPDPHRMLEAYYQSAI
                     TLNLLRGFAKGGLADLHEVHRWNLGFLKKSELHKQYTDISEKISQALAFMEACGINTS
                     NTPSLREVSVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRALDEAHVH
                     FLSGVKNPLGVKIGPSASADDIIALANVLNPNNEEGRLNIIIRMGADKIINNLPKIFS
                     KLKSEGLNLVYSIDPMHGNTVKAGNFKTREFDKIMQEVRSFFEIAISEGVYPGGVHLE
                     MTGKDVTECTGGASNVTAQSLEDRYETQCDPRLNADQALELAFLIADLVKKTRK"
     gene            complement(7564..7977)
                     /gene="uraH"
                     /locus_tag="RJ267_001129"
     CDS             complement(7564..7977)
                     /gene="uraH"
                     /locus_tag="RJ267_001129"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HDV7388988.1"
                     /translation="MFSIKKTLLILASVPMFLSATEYQLSTHVLDITSGQPAPKVKVE
                     LYKLEANQQWKKVSEEFTEENGRIGDLLPYEKAENRAFGIYKLKFFTKDYYTSHKINT
                     FYPFVEVSFELSKDQKHYHVPITLSPFGYSTYRGS"
BASE COUNT         2718 a         1458 c         1051 g         2770 t
ORIGIN      
        1 gttgagccat tttcaaagtg gcttaatgat gacgcaaatt tttattaaga tgggatattt
       61 gctgattttt gtttcagtgg ttaatttttt atatgaaatt tattctctta taaaagatga
      121 aatgaaattt caaataaaat tttcaaaatt tatgctgagt ttgcttattt tgattttaag
      181 cttaatattt gttttttatt ttactaatac cataattgaa ctccaaaact taggcgaaaa
      241 cgctacaaaa actcaagaat ttatcagtat ccataatgca agtgaagtgg tgattaaaat
      301 catcttgata atgcaagttt ttttatattt cttaagcttt aaaatagcaa aaaaatgata
      361 aaatattaaa taaatccaaa agagaaggag taggccatga tgatctctga tgcaactatg
      421 atgcaacaaa attattattt aaataatgca caaaaagcta gcgataaagc tttagaaaat
      481 attgcagctg ttcgcgcaat aagtggagtt gatagtgcta atttagctat tgctgattct
      541 ttaagatctc aatcaagcac tatagatcaa ggtgtcgcaa atgcttatga tgctataggg
      601 gttttacaaa ttgcagatgc tagccttacc aatatctctc aaagcgcaga tagacttaat
      661 gaactttcag taaaaatgaa caatgctgca cttaatgatt ctcaaaaagg aatgctaaga
      721 acagaagcaa cacgcataca agaatccatc aatgattctt ttaataatgc aacttataat
      781 ggaaaaaatg tctttcaaac tatgaatttt gtagtaggta gcggaactga aactacaaat
      841 ttaaatccat tagcaacaga tggattaagc atagatagtc aagatagtat tacaaatttt
      901 atggatcaac ttggaagttt aagaagtgaa ataggctcag gtatcaatgc catcacatca
      961 aatattaatg caagtgttca aaatagcatc aactcaaaag cagctgaaaa taatttacta
     1021 aataatgaca tggcaaaaaa tgtcaatgat tttaatgcca attatctaaa agaaaatgct
     1081 gctgcttttg ttgctgcgca atccaacatg cagcttcaaa gcaaaattgc taatttatta
     1141 caataaaata agccctaaat agggcttatt ttttatcaaa atgactttag agcaaatttt
     1201 agaaaaaacc aaaaacgttc gtcttgtagc cgcaagcaag tatgtcgatg caagtataat
     1261 tgaaaagctt tttgatcaag gtatagtaga atttggagaa aatcaagtcc aagctctagc
     1321 acaaaaaaaa gaaaatcttg atgaaaaaaa actagacata aagtggcatt ttataggaac
     1381 gctacaaagc aacaaaatca atctcttaat caaacaaaaa cctatattat ggcactcttg
     1441 caatggtatt aaaatagcta aagctatgga caaaagactt gattataaat taaatacttt
     1501 attagaaatc aatagtgcaa atgaaaatag caaaagcggt ctagatccaa atcaagccgt
     1561 agaagaatat ttacaaatac aagaagaatg ctctaattta aatctttgtg gcgtaatgag
     1621 cataggatca cacagccaag ataaagaaaa tattataaaa agctttgaaa ctacatttaa
     1681 aatttatgaa attcttcaaa aacatggggc taagatttgc tctatgggga tgagtaatga
     1741 ttttgaaatt gctataaaat gcggatccaa cttggtaaga ctcggaagca ttttatttaa
     1801 aaatcttaag taaaacaatc ttacttaagc atatttatta gaaatttcct ctactatact
     1861 atcagagata ataaaatctg tatgataaag caagcaagat cccgcactaa taacttttaa
     1921 aacaagtttt ttattatttt tttcattagg attatgtgca tttctagcaa tttcatgaat
     1981 ttcatagatt aattctctat tcaatcttgt caaatctagc tctatgatat ttttttcaaa
     2041 ttccttaggt tctgcggtaa aatgattttc ttctttattt ttaaaatctt tttttgctcc
     2101 aaattttttt atagctttaa tctcgccatc ttcaagactt tgcaaatctt taattgcttt
     2161 taaaaaaaag ctaggcttct cccctccttc agctttaaat cccaatacaa aaccataggc
     2221 attatttttt aaattttcat ctttgatgat gttttctatt tcttctacat tgctttcaaa
     2281 tacagtagca tcaaacgaag aataataatc caaaatttca attctaccat aacgcttatt
     2341 atttttactc atcatggatt tgaaatcttc aattttacct atacttaaaa tttctccatt
     2401 gttttttaaa ctttcaaaat ctaaactttt aacataatct atggcattaa tttgttcata
     2461 aaatcgatct aaaggatggc ctgaaacata aattcctaaa atttcttttt catatcctaa
     2521 tttttccatc acttcaaatt cttcattttt gggagtaaaa tttacttgaa cacctgaagt
     2581 taattcctct tcaccaaaaa gagaacttgc agcatttttt cttacttcag ccattttacg
     2641 cgatgcttcg ctaagatttt ccatattatc aaacaaagct tttctagtaa aaccaaactc
     2701 atcaaaagcc cctgccttaa taagactttc taatgttcta cggtttattt tggtgggatc
     2761 tatcttacct aagaaatcat taatatcctt aaattctcca tcttgtcttg cttcaagtaa
     2821 attttcaact gcaggaatac ccacactttt tatagcccca agtccgtata taatagcatc
     2881 cttgccatct tgctctaaag cactaaattc acggatcgct ttgttaatcg atggaggtaa
     2941 aagtttaata ttcatttttt tcatctcatc aatataaaca gcaattttat ccacattgtt
     3001 ttcttcgctt gttaaaagcg ctgccataaa ttcactagga taataagttt ttaaataagc
     3061 tgtttgaaaa gtaatcaatg cataagccgc agagtgagat ttattaaaac catatcctgc
     3121 aaattttacg ataagctccc ataaatcctc agcttttgct ctatcatatc cttgtttttc
     3181 tgctccatct gcaaaatcag ttttaagctt tttcatcttc tcaggatctt ttttacccat
     3241 agcacgacgc actacatcag cacctcctaa agaaaagcca cctataattt gaacaatttg
     3301 cataacctgt tcttgataaa caataacccc ataagtaggc tctaaaacct tttctaaact
     3361 gtcaaaagga tattctatac tttttaaacc atgctttctg tcgataaaat catcaagcat
     3421 tcctgattcc atagggcctg gacgataaag cgcaagaacc gcaatgatat cttcaaaacg
     3481 ctctggtttt aagcgtgcat ttaagctttg cataccgcct gattcgattt gaaaaattcc
     3541 caaagtattt ccactttgta tggttttata aactttgcta tcatttacat ctatagtttc
     3601 ccaaataatg tctttattgt aacgcttttt aataagcttg atcgcattat tgattactgt
     3661 taaggtttta agacctaaaa agtcaaattt tatcaaatcc acatcttcta aatgatcttt
     3721 agaatactgc gttaccaaat gtctttcatc atttttactt tgtctaaaaa gcggagtttt
     3781 cttccataaa ctttcattag aaattacaac acctgctgcg tgcatacccg cattgcgatt
     3841 taatccttct aaagctcttg catactccca aacttcaaga cctttaggat gacgatcgat
     3901 aaattctttg attttaggtt ctttttcata agcagcatca agagtgattt taagctcttc
     3961 aggcacaagt ttagcaagct catcagcatc ttgaatactc atatcacaaa ctctagccac
     4021 atcacgaatc acccctttag ccaaaagttt accaaaggta atcacctgtg caaccttatc
     4081 cgctccatat ttatcaatca cataatcaat cacttcagca cgtctgtctt gacaaaaatc
     4141 cacatcaata tcaggcatgc tcacacgctc aggatttaaa aaacgctcaa aaagtagact
     4201 ataaggaata ggatctaaat ccgtaatcct taaacaataa gaaaccaaac ttcctgcagc
     4261 tgatcctctt ccagggccta ctggaatacc tttatcctta gccactttaa taaaatcatg
     4321 aacaataagc atataacctg aaaatttcat atttttaatg atgttaattt ctacttcaag
     4381 tctttgtttg tattcttcat gcttactttc atcgataaat tttaatctct cttcaagtcc
     4441 ctttttgcaa agttcttcaa aaaccatgtc atcattatca aagctaaatt cttttgtttc
     4501 ttcaggtaag ataatattat gatctttagc atattctctt gtaaatttaa aattcggtgg
     4561 agtgggattg ccaagattaa gctctaaatt acatttttgt gcgatttctt gtgtattttc
     4621 tatagcttct ggaatatctg caaaaagctc actcatctgc tcaggacttt taacataaaa
     4681 ttcatgcaca ctatgacgca ttctatcagg atcgttaagt ttttttccca tggctataca
     4741 cataaaaacc tcatgggcag ccgctctttc tttaaaagta taatgcgtat catttgtagc
     4801 aatgattttt atatttaatt ctttagaaag tctgataata tcatcatcta tcattctttg
     4861 atcgcctata ccatgacgca tgatttcaaa ataaaaatca tctttaaaaa cttttttata
     4921 ccataatgcc gcttcttttg ctgcttcata gccttttgca ccaaaacgca catttctttc
     4981 actataagta tttaagtgcc aatttacttc accttgcaag caagcagaag agcaaataag
     5041 accttcgcta taatcttcca aaagcttttt attgatacgc ggataataat acaaaccttt
     5101 aatataactt tgagaactta aatacattaa attttgatat ccaatctcat tttttgcata
     5161 caaacaaagg tgaaaacgct gacgagaact tttatcatct aactcatcat gattatgcaa
     5221 atacgcttct ataccaatga taggttttaa accttgtgct ttcattgttt gataaaaatc
     5281 aattgcccca aacatatttc catgatctgt catagccaca cttgtagcac cctgctcttt
     5341 taaagtcaaa gctaattctt taagcttatt ggctccatca agcaaagaat attctgtatg
     5401 taaatgcaag tgtgtaaatt gactcatttt cttcctttag ttttttaagg cttattttaa
     5461 ttttgataaa aattataaat ttttctcgct gaatttgaaa gaaattgacc ctaaatttca
     5521 acttaaattt tacaaaaagg caaaaattca gccaaaataa actataataa aattaagatt
     5581 ttaatcttaa taaaaagaac ttctcaaagg atgaaatgat gaaagtaaaa attgcttatt
     5641 gcaatctttg aaattatcgc ccacaagctg caagggttgc agaagaacta caaagcgatt
     5701 tcaaagatgt tgaagtagaa tttgaaattg gcggcagagg tgattttatc gttgaagtag
     5761 acggaaaagt tatcttctct aaaacacaac ttattaattg cgaaagtgaa agatttccat
     5821 atcaaaatga aattaatcaa ttaataaaaa atagagtgta atcaaacact ctatcataac
     5881 attttctcat attccttacc aatatatatg ttttgctcat actcgataat aggacgctta
     5941 atacaacttg gattttccaa tacaattttt tcaagttctt tttcatttaa atttttaact
     6001 ttttctttgt ttaagccaag ttttttagaa gttaatccag cagtattgat aagttcttca
     6061 aaagattttt gttttaacca tgtgtataaa atatcttgat taatcttttt aatatccata
     6121 aaatcaaaca caataccttt ttgtgttaaa gcatccatag ctttctttac agaattgcaa
     6181 tttttaatac cataaagttt cattttctag tcttttttac caaatctgcg attaaaaaag
     6241 caagttctaa tgcttgatcc gcattaagtc ttggatcgca ttgagtctca taacgatctt
     6301 ccaagctttg agcagtaaca ttgcttgcac cacctgtgca ttctgttaca tctttcccag
     6361 tcatttcaag atgcactcca cctggataaa ccccttcgct tattgcaatc tcaaaaaaag
     6421 atctcacttc ttgcataatt ttatcaaact cacgtgtttt aaaattgcct gcttttaccg
     6481 tatttccatg cataggatct atgctatata ctaaatttaa accttcactt ttaagtttag
     6541 agaaaatttt tggcaaatta ttgataattt tatctgcacc catgcggata ataatattta
     6601 atcttccttc ttcattgttt ggatttaaaa catttgctaa agctatgata tcatcagcac
     6661 ttgcactagg tcctatttta acccctaaag gattttttac tccacttaaa aaatgcacat
     6721 gagcttcatc aagcgccctt gttctttcac ctatccaaag catgtgagct gaacaatcgt
     6781 aaatttctcc acttaaacta tccactctag ttaaagcttc ttcataaggc aaaagtaaag
     6841 cttcatgtga agtataaaca ctaacttctc ttagacttgg agtattactt gtattaattc
     6901 cacaagcttc cataaaagct aaagcttgtg aaattttttc actgatatca gtatattgct
     6961 tatggagttc actctttttt aaaaagccca aattccaacg atgtacttca tgtaaatctg
     7021 ctaaaccacc cttagcaaat ccacgcaaca aatttagcgt tattgcgctt tgataataag
     7081 cttcaagcat tctatgtgga tcaggaatgc gtgcttgttc actaaattca aaaccattaa
     7141 taatatcacc acgataacta ggaagactta taccatctaa ctcttcaaaa tcactacttc
     7201 ttggcttggc aaactgccct gcaatacgac caatttttat aacaggacat ccaccagcaa
     7261 atgtaagtac tatagccatt tgaagtaaaa ttttaaacat atcacggata tttacagcgc
     7321 caaaattttc aaaactttca gcgcaatctc caccttgaag taaaaaagct tcttttttac
     7381 aaactcttgc taaagacttt tgaagatttc tcacttctcc agcaaaaacc aaaggaggaa
     7441 gtttctcaag tcttgctaaa actctattca tttcctcttg atctggatag ataggttgct
     7501 gttttatagg atagtttttc caagaattct tagcccacat ggttttttct ttcgttttat
     7561 ttatcagctt cctctataag ttgaataacc aaaaggagaa agggttattg gaacatgata
     7621 atgtttctga tctttagaaa gctcaaaact tacctctaca aaaggataaa aagtatttat
     7681 tttgtgtgat gtgtaatagt cttttgtaaa aaatttaagc ttataaattc caaaagccct
     7741 attttcagct ttttcatatg gtaataaatc tcctattcta ccattttctt cggtaaattc
     7801 ttcacttact tttttccact gttgatttgc ttccaactta taaagctcaa cttttacttt
     7861 aggagcaggt tgtccagaag taatatccaa gacatgagta cttaattgat attcagtagc
     7921 actcaaaaac attggcacgc ttgctagtat taataaagtt tttttaatag aaaacatttt
     7981 ctctccttgt ataatat
//
LOCUS       DAPIWQ010000074         7733 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.074, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000074 DAPIWQ010000000
VERSION     DAPIWQ010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7733)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7733)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7733
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.074"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            176..847
                     /locus_tag="RJ267_001130"
     CDS             176..847
                     /locus_tag="RJ267_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HDV7388989.1"
                     /translation="MQKSIEEKTQQYAAIEDKIASFEEALGLEAENNLTISARLDNLQ
                     LTNEQQLGILGQIPNGWPIENKGITGNFGWREHPLLKRREFHPGIDLRAEIGTPIYAP
                     ASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMMRKEVVKAGQFVNKGQLIGYSGNT
                     GLSTGPHLHYEVRFINKTLEPLYFLNLQRKNMNDFFNQERRVPWQSLIKAVSAQHPAL
                     AQKQQ"
     gene            784..1179
                     /locus_tag="RJ267_001131"
     CDS             784..1179
                     /locus_tag="RJ267_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HDV7388990.1"
                     /translation="MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFASMLHVDGEL
                     SGIIHSESIVVIGKNGNLKGELQADKIVVNGCFEGQLEANSLEILAGGVVNGDISTQK
                     ISIENGGRFNGTSKIKEDTIKLIENNNEE"
     gene            1179..4115
                     /locus_tag="RJ267_001132"
     CDS             1179..4115
                     /locus_tag="RJ267_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDV7388991.1"
                     /translation="MQASFYEYLQNPKICELFLCKDEKQADLLAQVSRFKGLKTFVLP
                     DFRAQFGDDLRAFSKELFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHI
                     DKKQNFDLKCFEDEISRLGYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEE
                     IESIRYFDLQSQKSIPNELEHFEICPFLKYFDKENYEIFKDKLEDFQSDALIHDINSL
                     GFWCIDDFFDYLELDFLACEKFDINEYEKDISFVNAKILPQAKKFKELQSSYNKDFFE
                     FHKNKKITLLAKNEALFKALELEDTQNIHFVKSDLRLNLISPEELIISLNQKEKQKTR
                     KKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSDKLLLPVEN
                     LYLIDKYLGVSGSIPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMAAKRSLVQAKKI
                     TVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA
                     IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNL
                     KENKACVVVGTHALLSVECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPI
                     PRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDDALLKEAIARELRRGGQIFYIHN
                     HIASIEQCKKHLLELFSTLRILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVESGI
                     DLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL
                     ESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEV
                     DQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEVYEIESEIEDRFGKL
                     DIYTKQFLSLITIKILALNKFKSISNYEQNIQFTALNDEKELIKAKSKDDDDILEAIL
                     THLRKA"
     gene            4117..4878
                     /locus_tag="RJ267_001133"
     CDS             4117..4878
                     /locus_tag="RJ267_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7388992.1"
                     /translation="MDWNKTYAAIYRARKDYLKPIFEIDPIALKDLVGMESQKKALYE
                     NTLNFIQDKGANHALLWGSKGTGKSSLIKAIFNEFKEQGLRLVELNKEDLFALADIID
                     EIRLENFKFILFCDDFSFEKGDDSYKFLKPLLEGSIEKAPNNVIIYASSNRRHLLSES
                     ITDNLDTQITHTELHLSDAAEERLSLSDRFGLWLSFYQGNLEEYLKMIDFYFKDYSCD
                     KELLHAKAKEFATLRASRSGRTAKQFYLAFKENFK"
     gene            4875..5561
                     /locus_tag="RJ267_001134"
     CDS             4875..5561
                     /locus_tag="RJ267_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HDV7388993.1"
                     /translation="MTGAQIFTKLLNLDLNYHDFDWLENQGLSEFELLISVVLTQNTN
                     WKNVLKALENLKKENIASLEQINTLSNLELATLIKPSGFYNTKAKRLKGLVESIINTY
                     ENLENFKTNVSRKWLLNIKGLGFESVDGILNYLCKREILVVDSYSLRLAFHLGYEFEN
                     YEELREFFQSGIESEQENLCKILGRKCELYELYQIFHALIVAFAKQSFKGQKLSPKGE
                     EWIKILKEDL"
     gene            5558..6370
                     /gene="thiD"
                     /locus_tag="RJ267_001135"
     CDS             5558..6370
                     /gene="thiD"
                     /locus_tag="RJ267_001135"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HDV7388994.1"
                     /translation="MKAKGSELIPVLTIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTARVISVHDIPTQSVDEQMLAVFEDIVPKATKIGMIGSCELMSCVAKNLSEF
                     KPQNIVIDPVMFAKNGYALMPQENCDFFKQTIVKFADILTPNIPEAEFLCGFKIANEE
                     QMIKAAKHLCSLGAKAVLLKGGHSEINANDVFYDGKEIYILKGERIETKNTHGTGCTL
                     SSAIASNLAKGKDLFHAVSEAKEYVRNAIYYSLNLGKGCGPTNHFFKFLDEK"
     gene            6360..6992
                     /gene="thiE"
                     /locus_tag="RJ267_001136"
     CDS             6360..6992
                     /gene="thiE"
                     /locus_tag="RJ267_001136"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDV7388995.1"
                     /translation="MKNKLDLSLYLVATKGSKSEECFLNTLENAIKGGVSIIQLREKE
                     LNAREFYKLGLKVQKLCKSYKIPFLINDRVDIALALDADGVHLGQEDLEAKLARKLLG
                     DEKIIGLSLKKLEQLEFIQGVNYLGCGAIKATPTKESSLLSLELLSQICDKSPIGVVA
                     IGGIDKEALVELKGINLSGVAVVRAIMDAKDAFLAAKELKRKIYENLSLK"
     gene            6970..7599
                     /locus_tag="RJ267_001137"
     CDS             6970..7599
                     /locus_tag="RJ267_001137"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HDV7388996.1"
                     /translation="MKIYLLNETPFEGVENLILNEIVFYDFSVDLSLYDALICTSKNA
                     LKALQHAKITLNFKLNLYAVGQSTAQYAKNLGFKKIKIPSKAYGKDLFLEFKEELKMQ
                     KCLYLRAKNIVSTLNLDLKNVGVDLDEMIVYENVFKKGDKKLIHPAIFIFTSPLSVEN
                     FLKFYSLKEEDKVVVIGQSTAKKLLNFKNLYICENQSLLNCVKLAKTLV"
     gene            complement(7596..>7733)
                     /locus_tag="RJ267_001138"
     CDS             complement(7596..>7733)
                     /locus_tag="RJ267_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7388997.1"
                     /translation="NLSKDGVIIAHISIALNRDKNVNDEILLTKSIIIYPKENFWNLK
                     N"
BASE COUNT         2817 a          900 c         1453 g         2563 t
ORIGIN      
        1 ttatttaaat caaataatca aaaaaatagt tttttatatt attgctttta ttgttttatt
       61 tttagttttt agtggttttt atatcaaata tctcgatagc aaacttagtg atatcagtga
      121 aaagcgtgag gagcttttga aaaaaagcaa agaattggaa ttatctaatt cgcaaatgca
      181 aaaaagcata gaagaaaaaa ctcagcagta tgcagctata gaagataaaa tagcttcttt
      241 tgaagaggct ttgggcttag aagcagaaaa taatcttaca attagtgcaa gacttgataa
      301 tcttcagctt accaatgagc agcaacttgg aattttgggg caaattccta atggatggcc
      361 tattgaaaat aaaggcatta caggaaattt tggctggaga gagcatccgc ttttaaaaag
      421 aagggaattt catcctggta ttgatttaag agcagaaatt ggtactccta tttatgcacc
      481 agcaagtgga gtagtggaat tttcaggtta tagtgataat ggctatggct ataatgtaat
      541 tttattgcat aattttggtt ttaaaacagt atttgctcat atgatgcgca aagaagtggt
      601 caaagcaggt caatttgtta ataaagggca gttgataggt tatagtggca atacaggtct
      661 ttctacgggg ccgcatttgc actatgaggt aaggtttatt aataaaactt tagaaccttt
      721 gtatttttta aatttgcaaa gaaaaaatat gaatgatttt tttaatcaag aaaggagagt
      781 tccatggcaa tctttaataa aggcggtatc agcccaacat ccagctctag ctcagaaaca
      841 acagtaattt cttcaggtgc gagaattgag ggtaaatttt attttgcttc tatgcttcat
      901 gttgatggag agttaagtgg tattattcat tctgaaagca ttgtggttat cggaaaaaat
      961 ggaaatttaa aaggtgaatt acaagcagat aaaattgtag taaatgggtg ttttgaaggg
     1021 caacttgagg ctaatagttt agaaatttta gcgggcggag ttgttaatgg tgatatttca
     1081 acgcaaaaaa tttctataga aaatggcggt cgctttaatg gaactagtaa aattaaagaa
     1141 gatactatca aacttattga aaataacaac gaagaataat gcaagcttca ttttatgaat
     1201 acttacaaaa tccaaaaatt tgtgaacttt ttctttgtaa agatgaaaaa caagcagatt
     1261 tactcgctca agtttcacga tttaagggtt taaaaacctt tgttttacct gattttagag
     1321 cgcagtttgg agatgattta agggcttttt ctaaagaact ttttgatctt tgtaagattt
     1381 taaatgctta tcataaagaa gaagaaaaaa aaatccttat ttctccttta aatactgttt
     1441 taaaaaaact tccttcaaaa aaacatttac aaaattatca tatcgataaa aaacaaaatt
     1501 ttgatttgaa atgttttgaa gatgaaattt caagattggg atacgaattt gtagatatag
     1561 ttcaggataa aggtgaaatt tcaattcgtg cggatattat tgatattttt tgtatcaatg
     1621 aagaaaatcc tattagaatt ttactttttg gcgaagagat tgaaagtata agatattttg
     1681 atttgcaaag tcaaaagtct attcctaacg aactagaaca ttttgaaatt tgtccttttt
     1741 taaaatattt tgacaaagaa aattatgaaa tttttaagga caaattagaa gattttcaaa
     1801 gcgatgcttt aatacatgat atcaattctt taggcttttg gtgtattgat gatttttttg
     1861 attatttaga acttgatttt ttagcttgtg aaaagtttga tattaatgaa tatgaaaaag
     1921 atataagttt tgtgaatgca aaaattttac ctcaagctaa aaaatttaaa gaattgcaaa
     1981 gttcttacaa taaagatttt tttgaatttc ataaaaataa aaaaatcaca cttttagcta
     2041 aaaacgaagc tttatttaaa gctttagagc ttgaagatac tcaaaatatc cattttgtaa
     2101 aaagtgattt aaggcttaat cttattagtc ctgaagagct aattatttct ttaaatcaaa
     2161 aagaaaaaca aaaaacaaga aaaaaagcta gtttgattat agatgagctt aaaaatgggg
     2221 attatatagt acacgaagat tatggggtag gtaaattttt aggtcttgag atgatagtga
     2281 taagcggagc aaaaaaagag tttgttgcta tagagtatca aaattctgat aagcttttat
     2341 taccagtgga aaatctttat ttgattgata aatatttggg cgtgagtgga tctattccaa
     2401 gcttagataa actaggtaaa acaagcttta ttaaacttaa agaaaaatta aagactaaac
     2461 ttttagccat agcttctgaa attgttatta tggcggctaa aagatctttg gtgcaagcaa
     2521 aaaaaattac agtggattta aatagacaga ctgattttat agctagtgcg ggttttattt
     2581 atacaagcga tcaagataaa gcctgtcatg aaattttgca agattttcaa agtggaaaag
     2641 tcatggatag gcttttaagc ggtgatgtgg gttttggaaa aacagaagtc gctatgaatg
     2701 ctatttatcc agtagttaaa agtggatttt gcgcattttt atttgcgcct acgactttgc
     2761 tttctcatca gcattataaa accttaaaaa agcgttttga tccttttgat ataaaggttt
     2821 ttaaactgga tcgctttaca agtagtgcag aaaaaaaaca agttttacaa aatttaaaag
     2881 aaaataaagc ttgtgtagtt gtaggaactc atgcactttt aagtgtagaa tgtgaaaatt
     2941 tagcccttgt tattattgat gaagagcata aatttggagt gaagcaaaaa gaaaagctta
     3001 aagaaatcac tcaaaattca catattttat ccatgtcagc aacccctata ccaagaagct
     3061 taaatcaagc tttaagttct ataaaatctt atagtgtttt gcaaactcca ccagaagata
     3121 gaatggatgt aagaactttt gtcaaagaaa atgatgacgc acttttaaaa gaagctatag
     3181 caagagagtt aagacgtggt gggcaaattt tttatattca taatcatatt gcaagtatag
     3241 agcaatgtaa aaagcatcta ttagaacttt tttctacttt gcgtattttg attttacatt
     3301 ctaaaatcga tgccaagatg caagaagaag aaatgttgaa atttgaaaac aaagaatatg
     3361 atttgctttt aagtacctct atcgtagaaa gtgggattga tttaccaaat gcaaatacta
     3421 tcatagtaga aaaaagcgat cgttttggca tggctgattt gcatcaattg cgtgggcgtg
     3481 taggaagaag tgataagcaa ggttattgtt attttttaat tgaagataaa aatgctatca
     3541 caaaagatgc tttaaagcgt ctagtttcct tagaaagtaa ttctttttta ggcgcaggtt
     3601 ctattttggc ttatcatgat cttgaaattc gtggcggtgg aaatttatta ggcgtagatc
     3661 aaagtggaca tattgagcaa attggatata gtttatatct taaaatgtta gaagatgaac
     3721 ttaatgcttt aagtaaaaat gaagtggatc aaaaagaaaa taaacttgat ttaaaactca
     3781 atgttaatgc ctttttaaac agcgaactta tcagcgaaga tcgcttaaga ttagaacttt
     3841 atagaagact tagcaagtgt gagcaagttc atgaggttta tgagatcgaa agtgaaattg
     3901 aagatcgctt tggaaaactt gacatttata ctaagcaatt tttatctttg attactatta
     3961 aaattttagc tttaaataaa tttaaaagca ttagtaacta tgagcaaaat attcaattta
     4021 ctgctttaaa tgatgaaaaa gaactcatca aggcaaaaag caaagatgat gatgatattt
     4081 tagaggcaat tttaacgcat ttaagaaagg cttaaaatgg attggaataa aacttatgca
     4141 gcaatttata gagcaagaaa agattattta aagcctattt ttgaaatcga tcctattgct
     4201 ttaaaagatt tagtaggtat ggaaagtcaa aaaaaagcac tttatgaaaa tactttaaat
     4261 ttcattcaag ataagggagc aaatcacgca cttttatggg gatctaaggg cactggaaaa
     4321 tcaagtttaa ttaaagctat atttaatgaa tttaaagaac agggcttaag acttgtcgaa
     4381 ttaaataaag aagatttatt tgccttagca gatatcatcg atgaaatcag attagaaaat
     4441 tttaaattca tacttttttg tgatgatttt tcttttgaaa agggagatga tagttataaa
     4501 tttttaaaac ctttacttga gggaagcata gaaaaagccc caaataatgt aattatttat
     4561 gcgagttcaa atcgtaggca tttattaagt gaaagcatta ctgataatct tgatacgcaa
     4621 atcacacata cagaacttca tttaagcgat gctgctgaag aaagattaag cttgagtgat
     4681 agatttggtt tgtggttaag tttttatcag ggaaatttag aagagtattt aaagatgata
     4741 gatttttatt ttaaagatta ttcttgtgat aaagagcttt tgcacgctaa agctaaagaa
     4801 tttgctactc taagagcaag tagaagtggt cgtaccgcaa agcaatttta tttagctttt
     4861 aaggagaatt ttaaatgact ggagcacaaa tttttaccaa gcttttaaat ttggatttaa
     4921 attatcatga ttttgattgg cttgaaaatc aaggattgag tgaatttgag cttttaattt
     4981 ctgtcgtttt aactcaaaat acaaattgga aaaatgtctt aaaagcttta gaaaatttaa
     5041 aaaaagaaaa tattgcaagc ttagaacaaa tcaatacttt atccaattta gaacttgcaa
     5101 ctttaatcaa gcctagcggg ttttataata ccaaagccaa gcgtttaaaa ggcttagtag
     5161 aaagtatcat aaacacttat gaaaatttag aaaattttaa aacaaatgta agcagaaaat
     5221 ggcttttaaa tatcaaaggt ttgggttttg aaagtgttga tgggatatta aactatcttt
     5281 gcaaaagaga gattttggtt gtagatagtt atagcttgcg tttggctttt cacttaggtt
     5341 atgagtttga aaattatgaa gaattaagag aattttttca aagtggtata gagagtgagc
     5401 aagaaaattt gtgtaaaatt ttagggagaa aatgcgaact ttacgaactt tatcaaattt
     5461 ttcatgcttt gattgtagct tttgcaaaac agagttttaa aggacaaaaa ttaagcccta
     5521 agggtgaaga atggattaaa attttaaagg aagatttatg aaagcaaaag gaagcgaact
     5581 tatacctgtt ttaactatag caggaagcga ttgtagtggt ggagcgggga tacaagccga
     5641 tcttaaaacc tttagtgcgc acaatctttt tggtatgagt gtggttttaa gtgtagtagc
     5701 tgaaaatacc gcaagggtga tttctgtaca cgatatacct actcaaagcg tagatgaaca
     5761 aatgcttgcc gtatttgaag atatagtgcc aaaggcaact aaaatcggaa tgataggttc
     5821 ttgtgaatta atgagctgtg tagctaaaaa tttaagcgag tttaaacctc aaaacatagt
     5881 gatcgatcct gtaatgtttg ctaaaaatgg ctatgcttta atgccgcaag aaaattgtga
     5941 ttttttcaag caaaccatag taaaatttgc agacattctt acgcctaata ttcctgaagc
     6001 agagttttta tgcggtttta agatcgctaa tgaagagcag atgataaaag cagctaagca
     6061 tttatgcagc ttgggggcta aggcggtttt acttaaaggc ggacatagtg aaataaatgc
     6121 caatgatgtg ttttatgatg gaaaagaaat ttatatttta aaaggcgaac gcatagaaac
     6181 taaaaatact cacggtacag gttgtacgct ttcttcggct attgctagta atttagctaa
     6241 gggcaaggat ttatttcacg ctgttagtga agctaaagag tatgtaagaa atgcgattta
     6301 ttattcactt aatcttggaa aaggttgtgg tcctacaaat cattttttca agtttctaga
     6361 tgaaaaataa attagatctt agcctttatt tggttgctac taagggaagt aaaagcgagg
     6421 agtgtttttt aaatacttta gaaaatgcta taaaaggcgg agtaagtatc atacaacttc
     6481 gtgaaaaaga gcttaatgca agagaatttt ataaactagg cttaaaggtg caaaaacttt
     6541 gcaagtctta taaaatacct tttttgatta acgatagggt ggatatagct ttagccttag
     6601 atgctgatgg ggtgcattta ggacaggaag atttagaagc aaaattagct agaaagcttt
     6661 taggagatga aaaaatcata ggcttaagtc ttaaaaagtt agaacaactt gagtttatac
     6721 aaggagtaaa ttatctaggt tgtggagcta ttaaggcaac gcctactaaa gaaagttcgc
     6781 ttttaagcct tgagctttta agtcaaattt gtgataaaag ccctataggg gttgtagcca
     6841 taggtgggat tgacaaagaa gcacttgttg agttaaaggg tataaattta agcggtgtgg
     6901 ctgtggttag ggcgatcatg gatgctaaag atgctttttt ggcagctaaa gagctaaagc
     6961 gtaaaatcta tgaaaattta tctcttaaat gaaactcctt ttgaaggggt ggaaaatctt
     7021 attttaaatg agattgtttt ttatgatttt agtgtggatt tgagtttgta tgatgcttta
     7081 atctgcactt caaaaaatgc tttaaaagct ttacaacatg caaaaatcac tttaaatttc
     7141 aaactcaatt tatacgctgt gggacaaagt acagctcaat acgctaaaaa tttaggtttt
     7201 aaaaagatta aaattccatc aaaggcttat ggaaaagatc tttttcttga atttaaagag
     7261 gagttaaaaa tgcaaaaatg tttgtatcta agggctaaaa atattgtttc aactttaaat
     7321 ttggatctta aaaatgtagg tgtggattta gatgaaatga ttgtttatga aaatgttttt
     7381 aaaaaaggcg acaaaaagct tatccatcct gctattttta tattcacctc tcctttaagt
     7441 gtagaaaatt ttttaaaatt ttacagctta aaagaagaag ataaggttgt agttataggg
     7501 caaagcacag caaagaagct tttaaatttt aaaaatcttt atatatgcga aaatcaaagt
     7561 cttttaaact gtgttaagct cgctaagact ttggtttaat tttttaaatt ccaaaaattt
     7621 tctttgggat aaataataat gctttttgtg agtaaaattt catcattgac gtttttatca
     7681 cgatttaaag caatactaat gtgggctata ataacaccat ctttgcttaa att
//
LOCUS       DAPIWQ010000075         7508 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.075, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000075 DAPIWQ010000000
VERSION     DAPIWQ010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7508
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.075"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1249)
                     /locus_tag="RJ267_001139"
     CDS             complement(<1..1249)
                     /locus_tag="RJ267_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HDV7388998.1"
                     /translation="MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNP
                     FLNVQDSIQTHDKGKNYFDSFYKHNVNSAFVDSKGLAKKSVYELLNEQILPPLFPTSK
                     SQELAKKIIECLNEEGYFEHDEEFLKEYSLEEIERVRARFKFLDPVGVGAKDYKEAFL
                     FALENMELDEDIDEFCRMLIMDFENIQNYTKEPLYKEALAVLKRFSTPPFLEYFEDSR
                     IIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKA
                     TLYKIGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIP
                     LRDFFAFALDEEGETSNVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRT
                     ITKYRKHLNIASSTDRKKLYELEG"
     gene            complement(1249..1977)
                     /gene="lptB"
                     /locus_tag="RJ267_001140"
     CDS             complement(1249..1977)
                     /gene="lptB"
                     /locus_tag="RJ267_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HDV7388999.1"
                     /translation="MSKLEIVNLEKIIKKTKIIHGISLEVNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDVTKDPLNKRARSGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHDKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQTLIKELKRLGIGVLITDHNVRETLAICDRAYVIRSGSLLASG
                     NADEIATNKDVKKYYLGAEFKLLD"
     gene            complement(1970..2377)
                     /gene="tsaE"
                     /locus_tag="RJ267_001141"
     CDS             complement(1970..2377)
                     /gene="tsaE"
                     /locus_tag="RJ267_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HDV7389000.1"
                     /translation="MKEFILAKDEIKTMLQIMPKEGVVLLQGDLASGKTSLVQAWVKF
                     LGLDARVDSPTFSTMQKYENHDICIYHYDIYQEGLEGLLANGLFENFFEKGLHLVEWG
                     GENLKKTLMKFGISTIQIKISIKDDKRKYEIYE"
     gene            complement(2374..2619)
                     /locus_tag="RJ267_001142"
     CDS             complement(2374..2619)
                     /locus_tag="RJ267_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HDV7389001.1"
                     /translation="MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVG
                     DIITLHFTEYTQKYKVLAIPSTKSIPKNAQNEYVVKL"
     gene            2774..3994
                     /locus_tag="RJ267_001143"
     CDS             2774..3994
                     /locus_tag="RJ267_001143"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HDV7389002.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYNCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADAVSHGATGKGNDQVRFELGYLAFSPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHTPEEDMWRWSKSPKDAP
                     NESEIIELDFQKGDLVAINGEKLSPAGLLTKLNELGCKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRALESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQIHANGRVKLELYKGNVMVIGRESANDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            4007..4450
                     /locus_tag="RJ267_001144"
     CDS             4007..4450
                     /locus_tag="RJ267_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HDV7389003.1"
                     /translation="MKVLLIKDVKALGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFEIANLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDTLKSLGIHEVSVKLGHAIHAKFNINIKAK"
     gene            4450..4992
                     /gene="hslV"
                     /locus_tag="RJ267_001145"
     CDS             4450..4992
                     /gene="hslV"
                     /locus_tag="RJ267_001145"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HDV7389004.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHTDLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            4989..6308
                     /gene="hslU"
                     /locus_tag="RJ267_001146"
     CDS             4989..6308
                     /gene="hslU"
                     /locus_tag="RJ267_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HDV7389005.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGDLDESTIEIEISQNMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSNVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYSQLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            6305..7180
                     /gene="era"
                     /locus_tag="RJ267_001147"
     CDS             6305..7180
                     /gene="era"
                     /locus_tag="RJ267_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HDV7389006.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMHEKNQIIFIDTPGLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENF
                     LSLNPQVPHIITLNKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDE
                     IVKYLDEHEYFYDPEFLSASSEKEIYRDFILESIYENLSDELPYSSEVLIHRTKDTPN
                     LLILEANIITDTNSHKGMLIGKEGETLKRIGKDARFKISKLAQKKVLLKLFVTVKKNW
                     QKDEEFLKKLLNDEN"
     gene            7167..>7508
                     /locus_tag="RJ267_001148"
     CDS             7167..>7508
                     /locus_tag="RJ267_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389007.1"
                     /translation="MMKINSLNKINFIKSTDLLYAQRTGISKEDELFNNLTADFKLSK
                     PFDYQIAFFKHNEIYHCFLAPVYKLKKSRFCFPEPLIFQALFDERFIEESDYCVLNLY
                     DQTLYLYFYQEG"
BASE COUNT         2752 a         1250 c         1193 g         2313 t
ORIGIN      
        1 atccttcaag ttcatataat ttttttctat ctgtagagct tgctatatta agatgtttgc
       61 gatattttgt aatagttctt cgccctatat cgactttaaa ttcttcttta attaattcta
      121 aaattttact atcgcttaaa ggtttattgc gatcttcatt ctttactaaa tttgccacaa
      181 attctttaac acctacattt gaagtctctc cctcttcatc aagagcaaaa gcaaaaaaat
      241 cacgcaaagg gataagtcct ctttcacaac ttaaatattt atttgccaca gctcttgata
      301 tagtcgaagc attgcgttct aaatcaagtg ctaaatcctt aaaagtcata ggttttatct
      361 cttttcccat gaaaaaatca tattgatatt ctactatcat aagccctatt ttataaagag
      421 tagcttttct catcgctaaa gcatcaacta aattttttgc ttctttgatg taatgactta
      481 aaaaatcatg ctctaaacca tcagtttgga ttgaaatttc aggataataa tcatcattga
      541 tttttacttt aatttcacca ttttctttat aaacaaaaat atcaggaaca attatacgag
      601 aatcttcaaa atattccaaa aaagggggag tgctaaagcg cttaagtaca gctaatgctt
      661 ctttatataa aggctctttg gtatagtttt gtatattttc aaaatccata atcaacattc
      721 tacaaaactc atcaatatct tcatctaact ccatattttc aagagcaaat aaaaatgctt
      781 ctttataatc tttagctccc actcctacag gatctaaaaa tttaaatctt gctcttactc
      841 gctcaatttc ttccaaagaa tactctttta aaaattcttc atcgtgttca aaatatcctt
      901 cctcatttaa gcattctata attttttttg caagttcttg agatttgctt gtaggaaaca
      961 aaggaggaag aatctgttca tttaaaagct cataaacact ttttttggca agtcctttac
     1021 tatccacaaa agccgaattt acattatgtt tataaaatga atcaaaataa ttcttaccct
     1081 tatcatgagt ttgtatcgaa tcttgaacat ttaagaaagg attatcctca gcaaatttat
     1141 ctaaattttc ttttaaatcc tctatatttg cttgtaaaat cggcaaccaa gagcgtaaag
     1201 tttgagaaat tttagtcttg ggtgcttggg tgattttttg ctttaacatc aatcaaggag
     1261 tttaaactcc gctcctaaat aatacttttt cacgtcttta ttggttgcaa tttcatcagc
     1321 attcccacta gcaagcaaag agcccgatct tataacataa gctctatcac aaatagccaa
     1381 agtctcacgc acattatgat cggtaattaa aaccccaatc cctaatcttt taagctcttt
     1441 aattaaagtt tgaatttcag ccactgctat aggatcaaca cctgcaaaag gctcatcaag
     1501 aagcaaaaac ttaggttcac acatcaagct tctagcgatc tcacaacgcc ttctttcacc
     1561 tccacttaaa cttaaacctt tccttaaacg aataggctct atacttaaga gttcaagcat
     1621 ttgctcaact ttatcatgta aaattttttt atctttataa aaaatctgag ccgctaaaag
     1681 caggttatct tctacactta aatccttaaa aatactactt tcttgaggta aataacctat
     1741 ccctgatcta gctcttttgt ttaaaggatc ttttgtcaca tctaaaccgt ctaaaagaac
     1801 ttttccacta cttggggaaa taagtccaca tatcatataa aaagttgtcg tttttcctgc
     1861 accatttggc cctaaaagtc ctacaacttc tccgctatta acctctaaag aaattccatg
     1921 tataatctta gtttttttaa taattttttc taaatttaca atttctaatt tactcataaa
     1981 tttcatactt tcttttgtca tctttaatgc taattttaat ctggatagta gaaattccaa
     2041 atttcattaa agtttttttc aaattttcac cgccccattc aaccaaatgt aaaccttttt
     2101 caaaaaaatt ttcaaataaa ccatttgcta aaagtccttc taaaccttct tgataaatat
     2161 cataatgata aatgcaaata tcatgatttt catatttttg catagtggaa aaagttggag
     2221 aatccaccct tgcatcaaga ccaagaaatt taacccaagc ttgtactaag cttgtttttc
     2281 cgctagccaa atctccttga agcaaaacaa caccttcttt aggcattatt tgaagcatcg
     2341 ttttgatctc atcttttgct aaaataaatt ctttcataat tttaccacat attcattttg
     2401 tgcgttttta ggaatgcttt tcgtgctagg tatagctagg actttatatt tttgggtgta
     2461 ttcagtaaaa tgtaaagtga tgatatcacc caccttaacc tctttactcg ctttaacaat
     2521 aacgccatta atccccacta caccactttt acacatatcc tcagaaatag ctcttctttt
     2581 cgtgatatta actacattta aaaatttatc tactctcata aaagcaattt tagcaaaaaa
     2641 aatcaatttt tggaacaaaa tttgcttacg cctttgcttt attttttaag aaaatagcaa
     2701 gtaaaaactt ttctttaatg aaatttggat acaattttac aattttcaaa tctattttaa
     2761 caaaggatat cttatgaaaa atgaagtaaa aaaagtagtt ttagcgtatt ctggggggct
     2821 tgatacgagc attattttaa aatggcttca agatgagtat aattgtgaag ttgtaacttt
     2881 tacagcagat attggtcaag gtgaagaact cgaacctgca agaaaaaaag ccctttcttt
     2941 aggcataaaa gaagaaaata ttttcattaa agatttaaga gatgaatttg ttaaagatta
     3001 tgtatttcct atgtttagag ccaatgcgat ttatgaagga gaatatcttt taggaacaag
     3061 tatagcaaga ccacttatag caaaaactca agcacaaatc gccctgcaaa caggtgctga
     3121 tgcggtaagc catggtgcca caggtaaagg aaatgatcaa gtgcgttttg aacttggcta
     3181 tcttgctttt agtcccgatt taaaaatcat cgctccatgg cgtgagtggg atttaaacag
     3241 tcgtgaaaaa ctccttgctt atgcgcaaaa acatggcatt gatatttcta agaaaaaagg
     3301 aaaatcccct tattctatgg acgcaaattt acttcatatt tcttacgaag gacttgtttt
     3361 agaagatcct gcacacacac ctgaagaaga tatgtggaga tggagtaaaa gcccaaaaga
     3421 cgctccaaat gaaagtgaaa ttatagaact tgatttccaa aaaggagatt tagtagcgat
     3481 aaatggagaa aaactaagtc ctgcaggact tttaaccaaa cttaacgaac taggctgcaa
     3541 acacggtata ggacgccttg atatagtaga aaatcgctat gtaggcatga aaagccgtgg
     3601 ttgttacgaa actccaggcg gtactatact tttaaaagca catagagcgc ttgaaagcat
     3661 cacgcttgat agagaagcag cacacttaaa agatgaactc atgccaaaat acgcgagttt
     3721 aatttataat ggctattggt tctcgcctga aagaatgatg cttcaagcct taatcgatga
     3781 gtctcaaatt cacgccaatg gcagagtaaa gctcgagctt tataaaggca atgtgatggt
     3841 tataggacgc gaaagtgcga acgatagctt gtttaacgca gcttattgta cttttgaaga
     3901 agatgaagtg tataatcaaa aagacgcagc aggctttatc aagcttaatg ctttgcgttt
     3961 tatcatcgca ggaaaaaatg gaagaaaatt ttaataaagg aataaaatga aagtattatt
     4021 aatcaaagat gtaaaagcac ttggaaaagc aggagaaata aaagaagtaa aagacggcta
     4081 tggacaaaat ttcttaatcg ctaaaggctt tgctaaagca gctactaatg aagttttaag
     4141 aaaatatgaa agcgacaaga aaaaagaggc tgaaaattta cgctttgaaa tcgcaaattt
     4201 agaaaaactc aaagaagaac ttagcaaaat cactcttgaa atttcaaaac ccgtaggtgc
     4261 aaatggaagt ttgtttggtg gcgtaaccaa agatgaaatc gctcacgccc taaaagaaca
     4321 aagccatata gaaatcgata aaaaaagttt agaatgtgat accttaaaaa gcttaggaat
     4381 ccacgaagta agcgtaaaac ttggacacgc aatccatgct aaatttaaca taaatataaa
     4441 ggcaaaataa tgtttcacgc aacaacgatt ttagcttaca aaggtaaaaa taaatccgta
     4501 attggcggag atggacaagt aagctttgga aatacggtgc taaaaggcaa tgctgtaaag
     4561 attagaaaac tcaacaatgg caaagtttta gcaggttttg caggatcaac agctgatgct
     4621 tttaatcttt ttgatatgtt tgaaaatctc cttcaaagtt ctaaaggcga tcttttaaaa
     4681 gcagcaattg acttttctaa agaatggaga aaagacaaat acctaagaaa acttgaagcc
     4741 atgatgctcg tacttgatag aaatcacatt tttctacttt ctggtacagg cgatgtggtc
     4801 gaacctgaag atggacaaat cgcagccata ggaagtggtg gaaactatgc gctttcagct
     4861 gctagagcct tagcaaaaca taccgattta gatgaagaag aacttgtaaa atcaagtctt
     4921 caaatcgcag gtgaaatttg catttatacc aataccaata tcaaaactta tgtaattgag
     4981 gatgagaaat gaatctaact ccaaaagaaa tcgttaaatt tttagatgat tatgttatag
     5041 gacaaaaaaa agctaaaaaa atcatagcta tagctttaag aaatcgctac cgcagaatgc
     5101 aacttagccc tgagttgcaa gatgatatag tgccaaaaaa tatcttgatg ataggttcta
     5161 caggtgtagg aaaaacagaa atcgctaggc gtttagctaa aatgatgggt tttcctttca
     5221 tcaaaatcga agcaagtaaa tatactgaag taggttttgt aggtcgtgat gtagaaagca
     5281 tggtaagaga tcttgccaat gcggctttaa atttggtaaa aaatgagcaa agagaaaaaa
     5341 acaaagataa aatcgatgaa tttatagaaa ataaaatttt agaaaaactt ttaccacctt
     5401 taccaaaggg tatcagcgat gaaaaacaag aagaatataa aaacagtctt gaaaaaatga
     5461 gaactaaact aagaaatggc gatcttgatg aaagcaccat agagatagaa atttcacaaa
     5521 atatgtttga taccaatccc aacctacctc ctgaaatggg tgcaatgcaa gatatagtta
     5581 aggttatagg cgttggcagt aaaaaagtca aaaaagaaat gaaaatcaaa gacgctaaaa
     5641 atgctttaaa aaatgaagca ggagaaaaaa tcctcgacca agaaagcatc aaaagcgaag
     5701 ccttaaaaag agcggaaaat gaaggtatta tttttattga tgaaatcgat aaaatcgctg
     5761 tttcaagcgg aaattcaaac cgccaagatc caagtaaaga aggggtgcaa agagacttac
     5821 ttcctatagt cgagggatca aatgtacaaa caaaaatagg tactttaaaa accgatcata
     5881 ttctttttat cgctgcaggg gcttttcatc ttagcaaacc aagtgatctt atccctgaac
     5941 tgcaaggacg ctttccttta agagtggaat tagatagtct tgatgataaa gctctttatg
     6001 aaattttaac acgccctaaa aattcacttt taaaacaata ctctcagctt ttaaaaactg
     6061 aaaatttaga acttgaattt gatgatgaag ccattaaaga aatagcaaaa atagcttcaa
     6121 gagccaatga agaaatgcaa gatataggtg ctagacgctt acatactgtg atagaaaaat
     6181 tacttgaaga tctaagtttt gaagctgatg agtatgcggg taaaaaattc gtagtggata
     6241 aaaaaatggt agaagaaaaa ctcggagata tcatagaaaa taaagatctt gcaaggtata
     6301 ttttgtgaaa agtggctttg ttagtatcat agggcgtact aatgcaggaa aaagtacttt
     6361 aatcaattcc ttattagaag aaaaaatcgc cctagtttct cacaaacaaa acgccacaag
     6421 gcgtaaaatc aaagccatag tgatgcatga aaaaaatcaa atcattttca tcgatacccc
     6481 aggacttcac gaaagcggtg ctacgcttaa tcaactgctt gtccaaagtg ctattaaatc
     6541 catgggggat tgtgatgtga ttttatttgt ggcgagtgtt tttgatagta caaaagacta
     6601 tgaaaatttt cttagtctaa acccacaagt accacatatc atcactttaa ataaagtaga
     6661 tttaaccgac aatgctacac ttttaaaaaa acttagcgaa tatgcaaaat ttagccaaca
     6721 ttttaaggct atcattcctt attcttctaa gaaaaaaagc tataaaaaag gcttgttaga
     6781 tgagatagta aaatatcttg acgaacatga atatttttat gatcctgaat ttttaagtgc
     6841 gagtagcgaa aaagaaattt atagagattt catacttgaa agtatttatg aaaatttaag
     6901 cgatgagctt ccttatagta gcgaagtgct tatccatcgc accaaagaca cacctaatct
     6961 tttaatccta gaagccaata tcatcacaga tacaaactct cacaagggta tgcttatagg
     7021 aaaagaaggg gaaactttaa aaagaatagg caaagatgca cgctttaaaa tttcaaaact
     7081 tgcccaaaaa aaggtacttt taaagctttt tgtaacagtg aaaaaaaact ggcaaaaaga
     7141 tgaagaattt ttaaaaaaac ttctaaatga tgaaaattaa ttcattaaat aaaataaatt
     7201 ttataaaatc tacagattta ctttatgctc aaagaacggg aatatccaaa gaagacgaac
     7261 tttttaacaa tttaactgca gattttaagc taagcaaacc ctttgactat caaatagctt
     7321 tttttaaaca taatgaaatt tatcattgtt ttttagcacc tgtttacaaa ttgaaaaaaa
     7381 gtcgtttttg ctttcccgag cctttaattt ttcaagcttt atttgatgaa agatttattg
     7441 aggaaagtga ttattgtgtt ttaaatttat atgatcaaac tttatattta tatttttacc
     7501 aagaggga
//
LOCUS       DAPIWQ010000076         7504 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.076, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000076 DAPIWQ010000000
VERSION     DAPIWQ010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7504)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7504)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7504
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.076"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(56..826)
                     /gene="ptmA"
                     /locus_tag="RJ267_001149"
     CDS             complement(56..826)
                     /gene="ptmA"
                     /locus_tag="RJ267_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin modification protein PtmA"
                     /protein_id="HDV7389008.1"
                     /translation="MLENKIIFVAGACGRIGKALCEKILLSKGIPILADINKECLNKL
                     QENLETNFKTKLLSLELDITKQESLQTALQKSQERYGKIDAFVNSSYPFGKDWGKTPY
                     YELKYEQICESLNLHLAGFMLAAQEFVKFFKQQGYGNIINLSSIMGVYAPKFENYEGT
                     SMQSSLEYSVIKAGINHMSSWLAKELFNQNIRVNTLASGGILDNQNELFLKAYRKCCA
                     SKGMLDADDICGTLVFLLSDESRFITGQTLVVDDGWGL"
     gene            complement(826..1533)
                     /gene="legF"
                     /locus_tag="RJ267_001150"
                     /gene_synonym="ptmB"
     CDS             complement(826..1533)
                     /gene="legF"
                     /locus_tag="RJ267_001150"
                     /gene_synonym="ptmB"
                     /EC_number="2.7.7.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N,N'-diacetyllegionaminic acid synthase"
                     /protein_id="HDV7389009.1"
                     /translation="MAEILCTICARGGSKGVKNKNIRKINKLEMIAYSIIQAQNSKLF
                     KHIVISTDSDEIASVAQKYGAEVFFKREAHLANDQAAKLPVMRDALLRSEEHFKTRFE
                     TLIDLDASAPLRSSLDIKKAYESFVENDNSNLITAVPARRNPYFNLVEIQNNKVVKSK
                     EGNFTTRQSAPKCYDMNASIYIFKRDYLLENDSVFGKNTGLFVMDESTAFDIDSELDF
                     KIVEFLISLKNLSPKDF"
     gene            complement(1526..2431)
                     /gene="ptmF"
                     /locus_tag="RJ267_001151"
     CDS             complement(1526..2431)
                     /gene="ptmF"
                     /locus_tag="RJ267_001151"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamine-D-fructose-6-phosphate isomerase
                     subunit"
                     /protein_id="HDV7389010.1"
                     /translation="MKILIIGFGSIGKKHFLALKNLNHEVSLLSLSAKKEEFKNTPIY
                     RSLKECDLNEFDLFIIANITTEHFNTLKTLDELVKDKTILVEKPLFEKSQNFTSSKNH
                     IYVAYLLRFNPVIVALKRLLKGEKIYFASLVCNSYLPHWRALDYRQNYSAKKELGGGV
                     LLDLSHEIDLAFFLFKDLELIYSQNAKISELDITSDDFAFLALKNSQETKIHIELDYF
                     SKFNKREMTIHTLEKSFKADLINNKIKIYHKNQSQKILNFENNTIKTLQNLHQAVFEK
                     NNKLCDLKQALKVLEICDKVRKKNG"
     gene            complement(2428..3453)
                     /locus_tag="RJ267_001152"
     CDS             complement(2428..3453)
                     /locus_tag="RJ267_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HDV7389011.1"
                     /translation="MDINKLKLTPDSSIKEALKIVGQERVRLGIIVDKKDKFLGVISD
                     SNIRKALISGKTLKDSIKDIYTKNPITIKENTSKEQLLKLSSKTDIYDFPVLDEKGQI
                     LSIKSISSLLKANPNSIIIMAGGLGSRLKELTKDTPKPMLKVGKKPILESIVQRLKNQ
                     NFENFIFCVNYKKQIIEDYFQKGQKFGVKISYIKERKKLGTAGALSLIKQEFKESFIV
                     MNADILTELDFNALLKAHKKSKALMSVCVREFEQQIPYGVITQKQGFIENIEEKPTQK
                     FLVSAGIYVLENEILNLIAKNEYLDMPELIKLVLQKGKVNTYIINDYWIDIGRPDEFL
                     KANEDFK"
     gene            complement(3462..4616)
                     /gene="legG"
                     /locus_tag="RJ267_001153"
     CDS             complement(3462..4616)
                     /gene="legG"
                     /locus_tag="RJ267_001153"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HDV7389012.1"
                     /translation="MSKRKICIVSATRAEWYLLRILCHEIQNDKDLSLQIIATGAHLS
                     PEFGLTYKEIEKEFKITKKIPILLANDDKISLCKSMSLAFSAFSDAFEDLKPDMVVIL
                     GDRYEMLSVASVCLLMHIPLVHLCGGELTLGAIDDSIRHSISKMSHLHFVSHEIYKKR
                     LLQLGEEEKRVFNIGSLASTIIKNMNFLNKKDLEKALEMKLDKELYLITYHPLTLNVK
                     NTQKEIKTLLKKLDTLKNASLIFTKANADENGLLINEILQNYCQKNSHKAKLFDNLGS
                     QKYLSLMKIAKAMIGNSSSGISESPFFKTPCINIGDRQKGRLRTQNIIDSEINDLDQA
                     FEKLESKEFKQNLKNFKNPYDNGKNPNKIIKTCLKNVNLDTILHKNFIDL"
     gene            complement(4609..5613)
                     /gene="legI"
                     /locus_tag="RJ267_001154"
     CDS             complement(4609..5613)
                     /gene="legI"
                     /locus_tag="RJ267_001154"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HDV7389013.1"
                     /translation="MKKTLIIAEAGVNHNGDLNLAKKLIEVAADSGADFVKFQSFKAK
                     NCISIKAKKAPYQLKTTASDESQLQMVQKLELDLKAHKELILHAKKCNIAFLSTPFDL
                     ESVDLLNELGLKIFKIPSGEITNLPYLKKIAKLDKKIILSTGMANLGEIEQALNVLCK
                     NGTKRQNITLLHCTTEYPAPFDEVNLKAMQSLKDAFKLDVGYSDHTRGIHISLAAVAL
                     GACVIEKHFTLDKNMSGPDHKASLEPQELKMLCTQIRQIQKAMGDGIKKASKSEQKNI
                     NIVRKSLVAKKDIQKGEIFNEGNLTTKRPANGISAMRYEEFLGKIATKNYKEDELIRE
                     "
     gene            complement(5653..6327)
                     /locus_tag="RJ267_001155"
     CDS             complement(5653..6327)
                     /locus_tag="RJ267_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HDV7389014.1"
                     /translation="MQNSLEAYTMKYNENGYGLLFPDGHVVRFYERILKYKLNKINGN
                     LLDFGCGNGVHSAYFQSKGFKTFGIDIVPSLKEIWEQNIRGGGYCKIIEPNSSIKGLF
                     DENMDIIFANQSLYYIPLKELKQNILEFYELLNTGGILFATMMSKKNYYFSHSQKEEK
                     NGLSKVEINGRLNETSFIHFIDKAQDLENLFQPFETLFLGDYDPINFYNFEGSAHHYI
                     YVGIKK"
     gene            complement(6345..7466)
                     /locus_tag="RJ267_001156"
     CDS             complement(6345..7466)
                     /locus_tag="RJ267_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl sugar amidotransferase"
                     /protein_id="HDV7389015.1"
                     /translation="MIYCDHCVMPNTRPGINFTKDKEGKNICSACINHKNKENIDYKA
                     RFKELEALCDKYRRMNGKFEYDCAIAVSGGKDSHFQVHIMKEKLGMNPILFSVEDNFT
                     MTEAGKKNLRNLSETFGCHIISLKPDIKTQKKVMLKTFEKYGKPTWFIDRLIYSYPFA
                     MALKFNTPLLVYGENVSYEYGGSDDKETPSAKEIFLNGTASDLDINEFIDNEIKEENL
                     QLFFNPNANDINKLNPIYLSYFVKWNSYSNYIFAKSRGFTDLEGEWDRTMCAENFDQV
                     DSIGYILHAWMKYPKFGHACASDYAARFVRYGLLSRKEAIELVQKRDHKLDNKCVEDF
                     CNFIGISKTTFWKIVEKHYNMDLFYKNDFGEFKLKNKLQ"
BASE COUNT         2259 a         1231 c         1099 g         2915 t
ORIGIN      
        1 tttaaagcct caatgttttt gttaaagagt tctttttgag taggggtgaa ggtcatcata
       61 agccccatcc atcatctacc actaaggttt gccctgtgat aaatctactc tcatcactaa
      121 gcaaaaacac caaagttcca catatatcat ctgcatctaa catgccttta ctcgcacaac
      181 attttctata agcttttaaa aaaagttcgt tttgattgtc taaaattccc ccgcttgcta
      241 gggtattaac gcgtatgttt tgattaaaaa gctctttagc tagccaagag ctcatgtgat
      301 taatccctgc ttttatcaca ctgtattcta aagagctttg catggaagtg ccttcatagt
      361 tttcaaattt tggcgcataa actcccatga tggagctaag attgatgata ttaccatagc
      421 cttgttgttt aaaaaatttc acaaattctt gagcggctag cataaagcct gctaaatgta
      481 aatttaaact ttcgcaaatt tgttcgtatt tgagttcata ataaggcgtt ttaccccaat
      541 ctttgccaaa aggatagctt gagttaacaa aagcatcgat tttgccgtat ctttcttgac
      601 ttttttgaag ggcggtttgt aagctttctt gtttagtgat atcaagttct aagcttaaaa
      661 gttttgtttt aaaatttgtt tctaaatttt cttgcaattt atttaagcat tctttgttga
      721 tatctgcgag tatagggata cctttgctaa gaagtatttt ttcgcaaagc gctttaccta
      781 tacgcccaca agctcctgct acaaagatga ttttattttc aagcattaaa aatcctttgg
      841 cgataaattt tttaaagaga ttaaaaactc tacgatttta aaatcaagct cgctatcaat
      901 atcaaaagct gtgctttcat ccattacaaa aagccctgtg tttttgccaa aaacactatc
      961 attttctaaa agataatccc ttttaaagat ataaatacta gcgttcatat catagcattt
     1021 tggggcactt tggcgagtgg taaaatttcc ttctttggat tttactacct tgttattttg
     1081 tatttctaca aggttaaaat aaggattgcg tctagcagga actgcggtga tgagattgga
     1141 attatcattt tcaacaaaac tttcataagc tttttttata tcaaggcttg agcgaagcgg
     1201 ggctgaagca tctaagtcta tgagagtttc aaaacgcgtt ttaaagtgct cttcacttct
     1261 tagtaaggca tcacgcatga caggaagttt tgcagcctga tcattggcaa gatgggcttc
     1321 tcttttaaaa aaaacttcag cgccatattt ttgggctaca cttgcgattt catcgctatc
     1381 ggtgcttatg actatgtgtt taaaaagctt tgaattttga gcttgtatga tgctataagc
     1441 tatcatttca agtttgttaa tctttctaat atttttgttt ttaacgccct tgctcccacc
     1501 tctagcacaa atggtacata aaatttcagc catttttttt ccttacttta tcacaaattt
     1561 caagtacttt taaagcttgc ttaagatcgc aaagtttatt atttttttca aagactgctt
     1621 gatgtaaatt ttgaagggtt tttatcgtat tattttcaaa atttaagatt ttttgacttt
     1681 gatttttgtg ataaattttg attttattgt ttatcaaatc ggctttaaaa cttttttcta
     1741 aagtatggat ggtcatttct cttttgttaa atttagaaaa atagtctagt tctatatgaa
     1801 ttttagtttc ttgtgaattt tttaaagcca aaaaggcaaa atcatcgctt gttatgtcaa
     1861 gctctgaaat tttagcattt tgggagtata taagctctaa gtctttaaaa agaaaaaagg
     1921 ctagatcgat ttcatgagaa agatcgagta aaaccccacc acctagctct tttttagcgc
     1981 tatagttttg cctgtagtct aaagctctcc aatggggcaa ataagaatta caaaccaaac
     2041 tagcaaaata aattttttca ccttttaaaa gcctttttaa agccacaatt acaggattaa
     2101 aacgcagtaa atatgctaca taaatgtgat tttttgaact tgtgaaattt tggctttttt
     2161 caaataaagg tttttctacg agtatggttt tatcttttac aagctcatct aaagttttta
     2221 aggtgttaaa atgctccgta gtgatatttg cgatgataaa aagatcaaat tcgtttaaat
     2281 cacattcttt caaagagcga taaattggag tgtttttaaa ttcttctttt ttagcactta
     2341 aagaaagcaa acttacttca tgatttaaat tttttaaggc taaaaaatgc ttttttccta
     2401 tgcttccaaa acctatgatt aagattttca tttaaaatcc tcattggctt ttaaaaactc
     2461 atctggcctt ccaatgtcaa tccaataatc gttgatgata taggtattta ctttgccttt
     2521 ttgcaataca agtttgatga gttctggcat gtctaagtat tcatttttag caattaaatt
     2581 taaaatttca ttttcaagta cataaatccc cgcacttact agaaattttt gagtgggttt
     2641 ttcttctata ttttctataa aaccttgttt ttgggtgatt actccataag gaatttgttg
     2701 ctcaaactca cgcacgcaaa cgctcattaa agcttttgat tttttatgcg cttttaaaag
     2761 agcattaaaa tccagctcgg ttaaaatgtc tgcattcata acgataaaac tttctttaaa
     2821 ttcttgtttt ataaggctta aagcccctgc tgtacctagt tttttacgct ctttaatata
     2881 agaaatttta accccaaatt tttgcccttt ttgaaaataa tcttctataa tttgtttttt
     2941 ataattcaca caaaagataa aattttcaaa attttgattt ttaagtcttt ggactatgct
     3001 ttctaaaatg ggttttttgc ctacttttaa cataggtttt ggagtatctt tagtcagctc
     3061 ttttaagcga gagcctaagc ctccagccat gatgataatg gagtttggat tagcttttaa
     3121 aagtgatgag atagatttta tagaaagaat ttgccctttt tcatctaaaa caggaaagtc
     3181 gtaaatatcg gttttagatg aaagttttaa aagctgttct ttgcttgtgt tttcttttat
     3241 ggtgatggga tttttagtgt aaatatcttt gatactatct tttaaagttt tgccactaat
     3301 taaagctttt ctgatgtttg aatcgctaat gactcctaaa aatttatcct ttttatcaac
     3361 tataatgcct aatctaacgc gttcttgccc gactattttt aaagcttctt ttatgctaga
     3421 atcaggggtg agtttgagtt tgtttatatc cacactaagc cttataaatc gatgaaattt
     3481 ttatgtaaaa ttgtatctaa atttacattt tttaggcaag tttttatgat tttattggga
     3541 tttttaccat tatcataagg gtttttaaaa ttttttaaat tttgtttaaa ttctttgctt
     3601 tctaattttt caaaagcttg atcaagatcg ttgatttcgg aatcaatgat attttgagtt
     3661 cttaaacgcc ctttttgtct atcgcctata ttaatgcaag gagttttaaa aaaaggactt
     3721 tcactaatac cacttgaaga attgcctatc atggccttgg ctattttcat aagacttagg
     3781 tatttttgtg agccaagatt atcaaaaagt ttagccttgt gtgagttttt ttggcagtaa
     3841 ttttgcaaaa tttcattgat taaaagtcca ttttcatcgg catttgcttt ggtaaaaatc
     3901 aaacttgcat ttttaagggt gtcaagtttt ttaagtaagg ttttaatctc tttttgagta
     3961 ttttttacat ttaaagttaa aggatgataa gtgattaagt aaagttcttt atctagtttc
     4021 atttctaagg ctttttctaa atcttttttg tttaaaaaat tcatattttt tatgatagta
     4081 gaagctaaag aacctatatt aaaaaccctt ttttcttctt ctccaagttg caaaagcctt
     4141 tttttataaa tttcatgact tacaaaatgt aaatgtgaca tttttgaaat gctgtgtctt
     4201 atactatcat caatagcccc taaagtaagc tctccgccac ataaatgcac taaaggtatg
     4261 tgcatcaata gacatacact tgctacgcta agcatttcat aacgatcgcc taaaatcacc
     4321 accatatcag gttttaagtc ttcaaaagca tcgctaaaag cactaaaagc taaactcata
     4381 cttttacaaa ggcttatttt atcatcgttt gcaagcagga tagggatttt tttagtgatt
     4441 ttaaattctt tttctatttc tttataagtg agtccaaact cagggcttaa gtgtgctcct
     4501 gtagcgatga tttgaaggct tagatcttta tcgttttgaa tttcatgaca taaaattctt
     4561 aaaagatacc attcagccct tgttgcactg actatacaaa tttttctttt actcacggat
     4621 aagctcatct tctttgtagt ttttagtagc aattttacct aaaaactctt catatctcat
     4681 agcacttata ccatttgcgg ggcgtttggt agtaagattt ccttcgttaa aaatttctcc
     4741 tttttggata tcttttttag cgactaaact ttttcttact atgttgatat ttttttgttc
     4801 gcttttactt gcttttttta tgccatcacc cattgccttt tgtatttgtc ttatttgggt
     4861 gcaaagcatt tttagttctt gaggttctaa acttgcttta tgatcaggtc ctgacatatt
     4921 tttatctagg gtaaaatgct tttctatcac acaagctcct aaggcaaccg cagctaggga
     4981 aatgtgtatg ccccttgtgt gatcagaata gcccacatca agtttaaaag catcttttaa
     5041 gctttgcatg gctttcagat tgacctcatc aaaaggggca gggtattctg tagtgcagtg
     5101 taaaagagtg atgttttggc gtttagtacc gtttttgcaa agcacattta aagcttgttc
     5161 tatctcgcct aaatttgcca tgccggttga aagtatgatt tttttatcaa gttttgcaat
     5221 ttttttaaga tagggtagat tggtgatttc tccgcttgga attttaaaga tttttaagcc
     5281 taactcattt aaaagatcta cactttcaag atcaaaagga gtagaaagaa aggcgatatt
     5341 gcattttttt gcgtgcaaga taagctcttt gtgagcttta agatcgagtt caagtttttg
     5401 caccatttga agttgactct catcgctagc tgtggtttta agctgatagg gtgctttttt
     5461 agcctttata ctgatgcagt ttttggcttt aaaactttga aatttaacaa aatcagcccc
     5521 tgagtctgct gcgacttcta ttaacttttt agccaaattt aaatcaccat tgtgattaac
     5581 ccctgcttct gcgatgataa gagttttttt catagttttg cctttatttt gccttaaaat
     5641 aaaggcaaaa ttttattttt taatacctac ataaatgtaa tggtgtgctg atccttcaaa
     5701 attataaaaa ttaataggat cataatctcc taaaaataaa gtttcaaaag gttgaaaaag
     5761 attttctaga tcttgggctt tatcaataaa atgtataaag cttgtttcat ttaatcttcc
     5821 attaatttca actttactca agccattttt ttcttctttt tgactgtggg aaaaataata
     5881 atttttcttg ctcatcattg tagcaaaaag tattccacct gtgtttaaaa gttcgtaaaa
     5941 ttctaaaata ttttgtttaa gttcttttaa gggtatatag taaagacttt gatttgcaaa
     6001 gatgatatcc atattttcat caaaaagtcc tttgatacta gaatttggtt ctataatttt
     6061 acaatatccc ccccccctaa tattttgctc ccaaatttct tttaaacttg gaactatatc
     6121 tattccaaaa gttttaaacc ctttgctttg aaaatacgct gaatgtacac cattgccaca
     6181 accaaaatca agtaaatttc catttatttt atttagtttg tattttaaaa ttctttcata
     6241 aaaacgtact acatgaccat ctggaaaaag taatccgtat ccattttcat tatatttcat
     6301 tgtataagct tctaatgagt tttgcatttt tttcctttat atttttattg taatttgttt
     6361 tttaatttaa attctccaaa atcattttta taaaataaat ccatattgta atgtttttct
     6421 actattttcc aaaatgtagt tttactaata cctatgaaat tgcaaaaatc ttcaacgcat
     6481 ttattgtcaa gcttatgatc tcttttttgc acaagttcaa tagcttcttt tctgcttaaa
     6541 agtccataac gcacgaaacg agctgcgtaa tcactcgcac aagcatgacc aaatttaggg
     6601 tatttcatcc aagcgtgtag gatatagcct atactatcaa cttgatcaaa attttctgca
     6661 cacattgttc tatcccattc gccttctaga tcagtaaaac cacgactttt agcaaaaata
     6721 taattgctat aagaattcca ttttacaaaa taacttagat aaataggatt aagtttgttg
     6781 atatcatttg cattgggatt aaaaaagagt tgtagatttt cttctttgat ttcattatct
     6841 ataaattcat ttatatctaa atcactagct gtaccattta aaaatatttc tttggcgcta
     6901 ggagtttctt tgtcatcact acctccatat tcataactaa cattttctcc ataaaccaat
     6961 aaaggtgtat taaattttaa agccatagca aaaggatagc tgtaaatcag tctatcaata
     7021 aaccaagtgg gttttccata tttttcaaag gtttttagca taactttttt ttgagttttg
     7081 atatcaggct ttaagctaat aatatgacaa ccaaaagttt cacttaagtt tctaagattt
     7141 ttcttacctg cttcagtcat ggtgaaatta tcttcaacgc taaaaagaat aggattcatt
     7201 ccaagttttt ctttcatgat atgcacttga aaatgcgaat ctttacctcc acttacggca
     7261 atagcgcaat catattcaaa ttttccattc attctgcggt atttatcgca taaggcttca
     7321 agctctttaa atcttgcttt ataatcaata ttttctttat ttttatgatt gatgcaagct
     7381 gaacagatat ttttaccttc tttatctttt gtaaaattaa taccaggtct agtatttggc
     7441 atcacgcagt gatcacaata aatcattccc caccccttca atttaataaa aatattagat
     7501 tgta
//
LOCUS       DAPIWQ010000077         7487 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.077, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000077 DAPIWQ010000000
VERSION     DAPIWQ010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7487)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7487)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7487
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.077"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            255..521
                     /locus_tag="RJ267_001157"
     CDS             255..521
                     /locus_tag="RJ267_001157"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389016.1"
                     /translation="MLEIDNNKEFKILRLNKQEILKIGGYGICDSCNKALSNDGFMIC
                     VLFSCYCEKCYQKWYKVAINHKEDREIEKDVYENIKSKITNIYF"
     gene            579..1139
                     /locus_tag="RJ267_001158"
     CDS             579..1139
                     /locus_tag="RJ267_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389017.1"
                     /translation="MIISVVNKKGGVGKTPFAFSIAKDLEYFLQSNDNSIIEKIYPEK
                     AKILPTPKKIDNCVYDFGGFVEKGVLDIIKESNKIIIPCTSNYNSLLRTLETLNEIGN
                     DDRVCILVTDYRDEKEKRQICETLESNFTDLNLFFFKFSKIIENSMSSGASFTELYNE
                     NNLSRLSYTNFFNEYQRLLDFIRKDK"
     gene            1142..1408
                     /locus_tag="RJ267_001159"
     CDS             1142..1408
                     /locus_tag="RJ267_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389018.1"
                     /translation="MEKKPFTIAEALNSETSSQKTFKKADKKSAGRKTIDQKLRRDNL
                     VVCRLNEQEMEILKKLMDLDLVSEYGTYIRKLILKEARALNINS"
     gene            1455..7250
                     /locus_tag="RJ267_001160"
     CDS             1455..7250
                     /locus_tag="RJ267_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002817902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDV7389019.1"
                     /translation="MSKKTKRQIEDEKDYGGRSLFDLIELEFSQGEENEQQNRELSEH
                     REVTDNIERTSISSNTPSVDRQENSAIQFDNTREMGRVLSEHNQESRNVRSHDTSITT
                     SSNGISNFGEQRSKQEERSGANRYGDTSGRTDKSQSIHSNRTPNLFSFISRNDDERQG
                     TDTRRNNQQSVLETATRNDGYERRSLKSGQKLDFVSDDEIYLGSLKDRFQKNLQAIKL
                     SKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKEFKELISTLDYAEYEKA
                     KTSTLDAFYTPKIIIDTIYQGLNQLGFNNDGHTKEIFEPSAGIGSFLSYAKNYSDKYH
                     FTCVELDTISANILKHLHPNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDTT
                     LNKTSVHNYFIGNAIKNLKEDGIAAFVVSSYFLDSKNSTIRNYIAEQATFLGAVRLPN
                     NAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYDDRFDEAEKRGMHPDVFNDFR
                     INEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKTLPKNIYKYQETK
                     IKLSYYRIDRESPEYEKYSKTLSKLKDGNYFEYNNEIYMKIRSDDELVFSKPVLNEHD
                     TRRIKKLIALRDQFNTLIEYEKNESSDLLVENQRKYLNKLYDEFVAKEGYLNRDANKK
                     AFREDVEANKILALEKNYSSGISKSVALKEGIDPIAPSATKADIFFKRTINAQKEIKI
                     STPKEALIASINEYGRIDLKFLETNLNQPLEETLKSLEQDRLIFKDHKNPANYVLAEK
                     YLSGNVKAKHKEVKKLVEDGFNEFVNNLESLEQVLPKDLKAVDISISLGTTWIPIKYY
                     KQFIEETLQITPKDYDLFLMEKTGEWSLKGFGHSLSPYIRSQYATEKIGCFDLFEHGL
                     LRKPIRIYDKKLDPSGKEIRELNPKETAIANSKLENLKNEFIEWIYKDYDRRTDLENI
                     YNERFNTNIEPQYNGEHLELPNFNANIKLKKHQKNAIYRAIQENSIIFDHQVGAGKTL
                     VAICSVMEQKRMGLLNKPLIVVPNHLARQWNDEFYHAYTNANILVATNDDLKKDNREK
                     FFSKIATNNFDAIIMTHSQFKLIPAPYEVIKKQYEEDINILEQTLEKKQNDDNVMRYS
                     VKDLEKRIENFKVKLSDLQTTHKKSKAIDFSELGIDALIIDEAHEFKNLLITTSMGDI
                     SGLGNLKGSQKAYDLYSKTQYIHEQNKKLYFLTGTPISNSITELYTLQRYIQPNILKE
                     KGIQAFDSWASTFGEVTNAWELDSSGINYKIVARFNKFKNVPELSTMYKSVADIVTNN
                     DIMKYQKDFVPKLYNDKPINIVAPRSEEIAEFIGIQDENGRWNEGSIVWRMEHQQDDI
                     TRNNLLACTTDARKAGLDFRLINPHCDDYANSKINKLIENVFNEYNAWNDDKGTQLIF
                     CDLSTPKQHSQKVALNGNIATPNLNKEEFVNINETIEQTEEENSKSLDELLAEQAKFD
                     VYTDILKKLVAKGIPQNEIRFIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGTN
                     VQKRIVALHHLDCPWRPSDLEQRSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDAR
                     MWQVIESKARSIEQFRKTGADVRTLEDVTSGAADAAEMKAEATGNPLILLQVQLNSDL
                     RQEEMLYSGYKRQIHNNEESLITNLSKIELLKKDIAKMEILNSIIKENNSEHFQGKYY
                     INDDEKDFIVFKNDTSDLNKSRQAELERNFEKIVKTIADDYQKEYKVLEFKGLLISGE
                     RTDLNTLNFYVSTTDGKTIIEPENLIYKRDEKTFFKLESYVNFGGFVKRLNNFYNDLE
                     KFTQLNKNKIENLEKEIVELKSITGDNTPKYKRKDYLEALREDNRIIMDEIEKMSKQK
                     NYKSDFVPKSPKILEDLNKQSKTIKENEIGY"
     gene            complement(7342..>7487)
                     /locus_tag="RJ267_001161"
     CDS             complement(7342..>7487)
                     /locus_tag="RJ267_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002808954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDV7389020.1"
                     /translation="SYMLFDLFDLREDDKERYGEFFEKCINIIKSTLKDRENRRIERN
                     GIN"
BASE COUNT         3160 a          929 c         1188 g         2210 t
ORIGIN      
        1 aaagatgaaa aaaattacaa tagtagcata cgcaatatgt tttttatcag gcttatggtt
       61 tttatttagt gctattaaag agcattttgg cattttatct tttattcttg gaattgcact
      121 tatttatttt ggtgttatta atataaaaag aattttgaat gattctaacg agaataaaaa
      181 tagcaaaaga attaaaagaa aaactgaaag agaaagagaa gagctaatct tgaaaaagat
      241 aggagagtaa taaaatgcta gagatagata ataataaaga atttaaaatc ttaagactaa
      301 acaaacaaga aattttaaaa attggaggtt atggcatttg cgacagttgt aataaagctt
      361 taagcaatga tggatttatg atctgtgttt tatttagttg ctattgcgaa aaatgctacc
      421 aaaaatggta taaagttgcg attaatcata aagaagatag agaaattgaa aaagatgttt
      481 atgaaaatat taaatcgaaa ataactaata tttattttta gttcttatta ataaatatta
      541 gtatataata ttatacaaaa atataaaaaa ggttttttat gataatatct gttgtaaata
      601 aaaaaggtgg tgttggaaaa actccttttg ctttttcaat tgctaaagat ttagaatatt
      661 ttttacaaag caatgataat tctattatag aaaagattta tcctgaaaaa gcaaaaattt
      721 taccaactcc aaaaaaaata gataattgcg tttatgattt tggtggtttt gtagaaaaag
      781 gggtattaga tattattaaa gaaagtaata agattattat tccttgcacg agtaattaca
      841 attctttact tagaacattg gaaactttaa atgaaatagg taatgatgat agagtttgta
      901 tcttggttac agattataga gatgagaaag agaaaaggca aatttgtgaa actcttgaaa
      961 gcaattttac agatttaaat ctctttttct ttaaattttc aaagataatt gaaaattcta
     1021 tgagtagtgg agcttctttt actgaacttt ataatgaaaa caatctttca agattaagtt
     1081 atacaaattt tttcaatgag tatcaaagac ttttagattt tattagaaag gataaataat
     1141 aatggaaaaa aaacccttta caatagcaga agctttaaac tctgaaacaa gctctcaaaa
     1201 gacttttaag aaagctgata aaaaatcggc tggaagaaaa actatagatc aaaaactaag
     1261 aagagacaat ttagtagttt gcagacttaa tgaacaagaa atggaaattt tgaaaaaatt
     1321 aatggattta gatttagtaa gtgaatatgg tacttatata agaaaattaa tcttaaaaga
     1381 ggcacgagct ttaaatatta atagttaaaa atgttaaaat atccttgcaa aaaacaaaaa
     1441 ttacaaggat acaaatgagt aaaaaaacaa aaagacaaat tgaagatgaa aaagattatg
     1501 gcggtcgaag tttatttgat ctaatcgaat tagaattttc acaaggagaa gaaaatgagc
     1561 aacagaacag agaattatcc gaacatagag aagttacaga caatattgaa cgaactagca
     1621 tttcatcaaa tacaccaagc gtggatagac aagaaaattc cgcaatacag tttgataata
     1681 ctagagagat gggcagagtt ttatccgaac acaatcaaga atctaggaat gtcagatctc
     1741 atgacactag cattaccaca agctcaaatg gaattagcaa ttttggagag caaagaagca
     1801 aacaagaaga gagatcaggg gctaacagat atggagatac tagcggaaga acagataaat
     1861 ctcaatcaat acatagcaat agaaccccaa atttattctc ctttatttca agaaatgatg
     1921 atgaaagaca aggaacagat acaagaagaa acaatcaaca atcagtattg gaaactgcaa
     1981 caagaaatga tggatatgaa agaagaagcc tcaaatctgg acaaaaatta gattttgtaa
     2041 gcgatgatga aatctatcta ggttctttaa aagatagatt tcaaaaaaac ctccaagcca
     2101 ttaaactttc aaaaactatt gaacaagaaa atcgctacgc taccaaacaa gaacaagaaa
     2161 ttctaaataa attttcagga tggggcggta ttcctcaagc ttttgatcat cagaataaag
     2221 aatgggaaaa agaatttaaa gaacttatta gcacacttga ttatgcagaa tatgaaaagg
     2281 caaaaacttc aactttagat gctttttaca ctccaaaaat tattatcgat acaatttatc
     2341 aagggcttaa tcagttagga tttaataatg atggtcacac caaagaaata tttgagccaa
     2401 gtgcaggtat aggctctttt ttgtcttatg caaaaaatta tagcgataaa tatcatttta
     2461 cttgcgtaga gcttgatact ataagtgcaa atatattaaa gcatttacac ccaaatcaaa
     2521 caatttataa taaagcattt cagcaccatt tatttgataa gccatacgat gcttttatag
     2581 gtaatccacc ttttggtcaa aaaaagattt tagatttaaa tgatactaca cttaataaaa
     2641 caagtgtgca taattatttt atcggtaacg caattaaaaa tttaaaagaa gatggaattg
     2701 ctgcttttgt agtatcaagt tattttttag attctaaaaa tagcacaata agaaattata
     2761 tagccgaaca agcaacattt ttaggtgctg taagattgcc aaataatgct tttaaaaaac
     2821 gagctaatac agaagttact accgatatta tcttttttaa aaaaggtaaa gatttaaata
     2881 tagataaatc ttggctggaa agcgtagaat actatgacga tcgttttgat gaagctgaaa
     2941 aaagaggtat gcaccctgat gtttttaatg actttagaat aaatgagtat tttaaaaata
     3001 atccacaaaa tatcttagga aaaatgaata ttaaaagctc tcaatatggt tatagtttag
     3061 aatgcttgga tgatggaaga gatttaaaaa tcgctttaga aaattttaca aaaaccttac
     3121 ctaaaaacat ttataaatat caagaaacaa aaatcaagct atcttattac aggattgata
     3181 gagaatcgcc tgaatacgaa aaatatagca aaactctaag taagttaaaa gatggaaatt
     3241 attttgaata caataatgaa atctacatga aaatcagaag cgatgatgag ttagtctttt
     3301 caaaacctgt tttaaatgaa cacgatacaa gaagaattaa aaaactcatt gctcttagag
     3361 atcaatttaa cactcttatt gaatatgaaa aaaatgaatc tagcgatctt ttagtagaaa
     3421 atcaaagaaa atatctaaac aagctttatg atgaatttgt agccaaagaa ggatatttaa
     3481 atagagatgc aaataaaaaa gcctttagag aagatgtgga agcaaacaaa attttggcac
     3541 tagaaaaaaa ttatagcagt ggtatttcaa aaagtgtagc tttaaaagaa ggtatagatc
     3601 ctattgcacc aagtgcaaca aaagcagata tttttttcaa aagaactata aatgcacaaa
     3661 aagaaattaa aatctcgact ccaaaagaag cattaattgc tagtatcaat gaatatggga
     3721 gaattgattt aaaattttta gaaacgaatt taaatcagcc tttagaagaa acccttaaat
     3781 ctttagagca agatagatta atctttaaag atcacaaaaa tcctgcaaat tatgttttgg
     3841 ctgaaaaata tctttctggc aatgttaaag caaagcacaa agaagtaaaa aaattagtag
     3901 aagatggctt taatgaattt gttaataatt tagaaagctt agaacaagtc ttgcctaaag
     3961 atttaaaagc ggttgatatt tcaataagct tagggacaac atggatacct ataaaatatt
     4021 acaaacaatt tatagaagaa accttacaaa ttactcctaa agattatgat ttatttttaa
     4081 tggaaaaaac aggcgaatgg agtcttaaag gttttggtca ttctttaagt ccttacatca
     4141 gatcacaata tgctaccgag aaaataggtt gttttgattt atttgagcat ggattattaa
     4201 gaaagcctat tcgcatttat gataaaaaac tagatccatc aggaaaagaa atcagagaat
     4261 taaatcctaa agaaactgca atcgctaatt ctaaattaga aaatttaaaa aatgaattta
     4321 tagaatggat ttataaagac tatgatagac gcacagattt ggaaaatatc tataatgaaa
     4381 ggtttaatac aaatatagaa ccacaataca atggagagca tttagaactt ccaaatttca
     4441 atgccaatat caaactcaaa aaacaccaaa aaaatgctat atatagggct attcaagaaa
     4501 atagtattat ttttgatcat caagtaggcg ctggaaaaac tttagtggca atttgctctg
     4561 tgatggagca aaaaagaatg gggcttttaa ataaaccctt aattgtagtc cctaatcatt
     4621 tagcaagaca atggaatgat gagttttatc acgcctatac aaatgcaaac attttagttg
     4681 ctacaaatga tgatttaaaa aaagataata gagaaaagtt tttttccaaa attgcaacaa
     4741 ataattttga tgccatcatt atgacacact cgcaatttaa attaatcccc gcaccttatg
     4801 aagttatcaa aaaacaatat gaagaagata ttaatatctt agaacaaaca ttagaaaaaa
     4861 aacaaaacga tgataatgtt atgcgatatt ctgtaaaaga cttagaaaaa cgcattgaaa
     4921 attttaaggt gaaattgagt gatttgcaaa ctacacataa aaaatctaaa gcaatagatt
     4981 tttcagaatt aggaattgat gcattaatta ttgatgaagc acatgagttt aaaaatttac
     5041 tcattacaac ttcaatgggt gatataagtg gtcttggcaa tttaaaaggc tcacaaaaag
     5101 cttatgatct ttattctaaa acacaatata ttcacgagca aaataaaaaa ctctattttt
     5161 taacaggaac gcctataagc aattcaatta cagaacttta tactttgcaa agatacatac
     5221 aaccaaatat cttaaaagaa aaagggatac aagcttttga ttcttgggct tctacttttg
     5281 gagaagttac aaacgcttgg gagcttgata gttctggaat aaattataaa atcgttgcaa
     5341 gatttaacaa attcaaaaat gttcctgaac tttctaccat gtataaaagc gtggctgata
     5401 ttgtaacaaa taatgatatt atgaaatatc aaaaagattt cgtgccaaag ctttacaatg
     5461 ataaacctat taatatcgtt gctcctagaa gtgaagaaat agcagaattt ataggcattc
     5521 aagatgaaaa tggaagatgg aatgaaggct ctattgtgtg gagaatggag catcaacaag
     5581 atgatattac tagaaataac ttacttgctt gtaccacaga tgctagaaaa gctggacttg
     5641 attttagact tattaatcca cattgtgatg attatgcaaa ttctaaaatt aataagctta
     5701 ttgaaaatgt ttttaatgag tataatgctt ggaatgatga taaaggcaca caattaatat
     5761 tttgtgattt atccactcca aaacaacact cacaaaaagt tgctctaaat ggcaatattg
     5821 ctacaccaaa tttaaataaa gaagaatttg tcaatattaa tgaaacaata gaacaaacag
     5881 aagaagagaa tagcaaaagc cttgatgaac tcttagcaga acaagcaaaa tttgatgtat
     5941 atactgatat cttaaaaaaa cttgtcgcaa aaggtattcc acaaaatgaa attcgtttca
     6001 ttcacgatgc aaaaacagac ttacaaaaag gacagctttt tgcagatatg aactcaggaa
     6061 aagctagaat tttaattgga tcaacgcaaa aaatgggtgc tggaacaaat gtgcaaaaaa
     6121 gaattgtagc cttacaccat ttagattgcc cttggcgtcc gagcgattta gaacaaagaa
     6181 gcggtagggt tataagacaa ggcaatgaac tctttatgag agatccacaa aactttagag
     6241 taaaagagtt tagatatgca actgaaagaa cctatgatgc tagaatgtgg caagtcattg
     6301 aaagcaaagc aagatccata gaacaattta gaaaaactgg tgctgatgta agaaccttag
     6361 aagatgttac aagtggtgca gctgatgctg cagaaatgaa agcagaagca acaggcaatc
     6421 cactcatttt actacaggtg caattaaata gtgatctaag acaagaagaa atgctttata
     6481 gtggttataa aagacaaata cacaataatg aagaaagtct tataactaat ctttcaaaga
     6541 ttgaactact aaaaaaagat atagctaaaa tggaaatttt aaattcaatc atcaaagaaa
     6601 acaatagcga gcattttcaa ggaaagtatt acattaatga tgatgaaaaa gatttcattg
     6661 tctttaaaaa tgatacgagt gatctaaaca aaagcagaca agcagaactt gaaagaaatt
     6721 ttgaaaagat tgtcaaaaca atagctgatg actatcaaaa agaatataag gttttagagt
     6781 ttaaaggact gcttataagc ggagaaagaa cagatttaaa cactcttaat ttttatgtga
     6841 gtactactga tggtaaaaca ataatcgagc ctgaaaattt gatttataaa agagatgaaa
     6901 aaactttttt taaattggaa agttatgtaa attttggtgg ttttgtaaag agattaaaca
     6961 atttttataa tgacttagaa aaatttactc aactcaataa aaataagata gaaaatcttg
     7021 aaaaagaaat tgtggagcta aaaagcatta caggagataa cactccaaaa tacaaaagaa
     7081 aggattattt agaggcatta agagaagaca atcgcattat catggatgaa atagaaaaaa
     7141 tgagtaagca aaaaaactac aaaagtgatt ttgtgccaaa atctccaaag attttggaag
     7201 atttaaataa acaaagcaaa actataaaag aaaatgaaat tggctattag taattactta
     7261 aagtttttta tttaatagcg ttcatgacaa accttaacta taatttctaa gtctagttaa
     7321 ttagacttag aatattaaaa attaattaat accatttctt tctattcttc tattttctct
     7381 atcttttaaa gtagatttaa taatatttat acatttttca aaaaattcac catatctttc
     7441 tttatcatct tctctcaaat caaacaaatc aaaaagcatg taagatg
//
LOCUS       DAPIWQ010000078         7466 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.078, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000078 DAPIWQ010000000
VERSION     DAPIWQ010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7466)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7466)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7466
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.078"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..206)
                     /locus_tag="RJ267_001162"
     CDS             complement(<1..206)
                     /locus_tag="RJ267_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HDV7389021.1"
                     /translation="MLKTKNIFIVFFVVLALIFGFIFYTFTNSYLNFLLIKQYEQKIK
                     SLDDVLKFSLLEHLNDANIKDFAK"
     gene            complement(200..862)
                     /locus_tag="RJ267_001163"
     CDS             complement(200..862)
                     /locus_tag="RJ267_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDV7389022.1"
                     /translation="MLKFKILIIEDDIDLNELLVLKLKSSGYEVISLADFFGVEDLLD
                     NEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYV
                     CKPFDFNELLLRIKAILKRHKKEEEKLSFGDFILDLVSYEFFYKNQKLEISNLDYELL
                     KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGIGYK
                     LC"
     gene            complement(849..2432)
                     /locus_tag="RJ267_001164"
     CDS             complement(849..2432)
                     /locus_tag="RJ267_001164"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HDV7389023.1"
                     /translation="MKKKIIVCDAILDKGVDILRKAEDIELIEAAKFPKDELMQMLSD
                     IEVAITRSSTDVDVNFLNHAKKLKALVRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLTSARSFVNAHNFLKIERKWEREKWYGIELMNKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKNLDEILEKSDFITIHTPKTKETNGMIGK
                     QEIAKMKDGIRLINCARGGLYTEEALYEGLKSGKIAWLGIDVFDKEPATNHPLLDFEN
                     ISVTSHLGANTLESQDNIAREACEQALSAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGIIGEYANSMLTFAAVGALGGILGEKINYVNAEF
                     VAKEKGVELSCETLPNSGYNNKLSVKIITENSNISVSGTVFNENEQRIVGLNGFKTDF
                     KPKGKMIIFKNKDIPGVIAKISSVLAAKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLDELKQLEACVFVQYVEI"
     gene            complement(2429..2917)
                     /locus_tag="RJ267_001165"
     CDS             complement(2429..2917)
                     /locus_tag="RJ267_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389024.1"
                     /translation="MKKYITISILSILLLILLAVVFTLLWQFKANVNFIPQFAKDTNT
                     QPSIQTQNQDLSWQEELAKWPTRDFTPAAEKFTLYFDADTSELKEKNKYYQLIVGKYD
                     IYSMFCLRQTLNSFNVKYFLLKSGHSPEIFLDTGNEKLIDDIIKELKKYKINTEVKEI
                     WL"
     gene            complement(2917..4587)
                     /locus_tag="RJ267_001166"
     CDS             complement(2917..4587)
                     /locus_tag="RJ267_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HDV7389025.1"
                     /translation="MSEVNKKVQDGVDDYLEEEDFGQLLEAFDKSREEATTEGVIVEI
                     KNDEVYVDIGKKSEGILALSEIQGDNSKLLFNVGDSIKVAVMGSRGGRSLLSHKKALR
                     KEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQYGFKETNNIIG
                     KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPD
                     PWSEIKDTLDIGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIN
                     KGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFV
                     KLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSTKELSSSPV
                     QEYAKIHKVGDIVKGAIRDIKDFGVFVELSKNVDALIHKEDISTSMLENLKIGDDIEA
                     AIVFIDEKKNRIRLSVKNLVRIKEREVLNEINNDDKVTLGDIIKDQLA"
     gene            complement(4719..5552)
                     /locus_tag="RJ267_001167"
     CDS             complement(4719..5552)
                     /locus_tag="RJ267_001167"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HDV7389026.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISRL
                     QKNFNVKTLENIQALSNEKKAIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQIC
                     EQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILKTKEVRVFNTICDATFKNQDAIKELSLKSDVMVVVGGKNSANTK
                     QLFLIAKTNCEDSYLIETEEELKKEWFLDKKHCGISAGASTPDWIIQKVIAKIENFRI
                     N"
     gene            complement(5542..6828)
                     /gene="aroA"
                     /locus_tag="RJ267_001168"
     CDS             complement(5542..6828)
                     /gene="aroA"
                     /locus_tag="RJ267_001168"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HDV7389027.1"
                     /translation="MKIYKLQTPVNAILENIAADKSISHRFAIFSLLTQEENKAQNYL
                     LAQDTLNTLEIIKNLGAKIEQKDSCVKIIPPKEILSPNCILDCGNSGTAMRLMIGFLA
                     GISGFFVLSGDKYLNNRPMRRISKPLTQIGARIYGRNEANLAPLCIEGQKLKAFNFKS
                     EISSAQVKTAMILSAFRADNVCTFSEISLSRNHSENMLKAMKAPIRVSNDGLSLEINP
                     LKKPLKAQNIIIPNDPSSAFYFVLAAIILPKSQIILKNILLNPTRIEAYKILQKMGAK
                     LEMTITQNDFETIGEIRVESSKLNGIEVKDNIAWLIDEAPALAIAFALAKGKSSLINA
                     KELRVKESDRIAVMVENLKLCGVEARELDDGFEIEGGCELKSSKIKSYGDHRIAMSFA
                     ILGLLCGIEIDDSDCIKTSFPNFIEILSNLGARIDY"
     gene            complement(6825..>7466)
                     /locus_tag="RJ267_001169"
     CDS             complement(6825..>7466)
                     /locus_tag="RJ267_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HDV7389028.1"
                     /translation="KLFELGAVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFY
                     DFLLDIKNIIGDFKLKSSKYNILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPKTY
                     ICELDLDLIRQDFKIAKPYSKFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFR
                     LVDIYSDENLKEFYSITISFSFRDINKTLEDNQVNECMDKILNTLKNLGLDLR"
BASE COUNT         2420 a         1325 c          881 g         2840 t
ORIGIN      
        1 tctttagcaa aatccttgat attagcatca tttaaatgct ctaagagaga aaattttaaa
       61 acatcatcaa ggcttttgat tttttgttca tattgtttta taagcaagaa attaagataa
      121 gaattagtaa aagtataaaa aataaaccca aaaatcaaag ccaatacaac aaaaaaaact
      181 ataaaaatat ttttagtttt tagcataatt tatagccaat acccctaaca cttataatat
      241 gatcttttag ttttggaaat ttatttctaa gtcttgttag agctatattg attgttttat
      301 cacttgtagt atcatctttc caaacacttt cgcttaaaaa ttgtctagta agcaaggtat
      361 ttggattttc aaaaaaacat tttaaaagct catagtcaag atttgagatt tctaattttt
      421 gatttttgta aaagaattca taactaacca aatctaaaat aaaatcacca aaagatagtt
      481 tttcttcttc ttttttatgg cgttttaaaa ttgctttaat gcgaagcaaa agctcattga
      541 aatcaaaagg tttacaaaca taatcatcac aaccactttc aaagccttcg agtaaatctt
      601 gatgtaaagc cttggctgta agaaaaataa ctgcttcttt atatccttgc tctcttaaat
      661 cttgaatttt ttctaaagaa tctccactgg gcaaatttct atcgactatt aaaagatcaa
      721 tttgctcatt atcgagcaaa tcttcaactc caaaaaaatc cgctaaagat ataacttcat
      781 aaccactaga ttttaacttt aaaacaagca gttcgtttaa atctatatca tcttctataa
      841 ttaaaatttt aaatttcaac atattggaca aatacacacg cctctaattg ttttagttca
      901 tctaatactt ctttttgaac tttttcatca atcaaaacaa cagccaaagc atacccaaaa
      961 ccatctctac caagcctaaa atcagctata ttgatatttt tagctgccaa aacggaactg
     1021 attttagcta taactcctgg tatgtctttg tttttaaaaa taatcatttt tccctttggc
     1081 ttaaaatcag ttttaaagcc atttaatcca actatgcgtt gttcattttc attaaacact
     1141 gttcctgaaa cactgatatt tgaattttcg gtgataattt taacgctaag tttattatta
     1201 taaccactat ttggaagagt ttcgcaagat aattcaactc ctttttcttt ggcaacaaat
     1261 tctgcattaa cataattaat tttctctcct aaaattccac ccaaagcacc aacagctgca
     1321 aaagttagca tagaatttgc atactcacca ataattcctt cagcctctaa tttaatactt
     1381 tttataggat ttttatcaat ttgaacagct aaaaaagcca ttttagaaac aagttctata
     1441 taaggagcta caaaaggtgg taaatcttca gttttaattg gtaaatttaa ggcattagga
     1501 taagccacgc ctcgtgctgc gcttaatgct tgctcacaag cttctcttgc gatattgtct
     1561 tgactttcta aagtatttgc tcctaggtga gaagtaactg aaatattttc aaagtctaaa
     1621 agaggatgat tagtcgcggg ttctttatcg aacacatcta taccaagcca agctatttta
     1681 ccacttttta aaccttcata taaagcctct tctgtgtaca atcctccacg agcacaattt
     1741 attaatctta ttccatcttt catttttgca atttcttgct ttcctatcat accattggtt
     1801 tctttggttt ttggtgtgtg aatggtaata aaatcacttt tttctaaaat ttcatccaaa
     1861 ttttttgctt gttccatatc taaatctgta atcttagaag cagaaatata cggatcatag
     1921 gctaaaattt tcataccaaa tgctttagca cggatagcta ctcttgaacc tatatttcca
     1981 aaacctataa cccctagcgt tttattcatc aattcaatgc cataccattt ttctctttcc
     2041 cattttcttt caatttttaa aaaattatga gcattgacaa agcttctagc tgatgttaaa
     2101 agatgtgcca ttgttagttc aactgcggca atagtatttg cagttgggac attcatcaca
     2161 atcactcctc gtttagaaca ctctggaata tcaacattat ctacgcccac cccggcacgc
     2221 acaagcgctt ttaatttttt ggcatgattt aaaaaattta catctacatc cgtagaactt
     2281 ctagtaattg caacttcaat atcgcttagc atttgcataa gttcatcttt tggaaatttt
     2341 gcagcttcta taagctcaat atcttcagct tttcttagaa tatcgacacc tttatccaaa
     2401 atagcatcac acactataat cttttttttc ataaccaaat ttcctttact tctgtattta
     2461 ttttatattt ttttaattct ttgataatat catctataag tttttcattg cctgtatcca
     2521 aaaagatttc tggactatgg ccagatttaa gaagaaaata cttcacatta aaagaattta
     2581 aagtctgtct taagcaaaac atagaataaa tatcatattt tccaactata agttgataat
     2641 atttattttt ctccttaagc tcgctagtat ccgcatcaaa atataaggta aatttttctg
     2701 ctgctggggt aaaatctctt gtaggccatt ttgctaattc ttcttgccat gaaagatctt
     2761 gattttgggt ttgaatgctt ggctgcgtat ttgtatcttt agcaaattgt ggaatgaaat
     2821 ttacattagc tttaaattgc caaagcaatg taaaaacaac agcaagcaaa atgagtaata
     2881 aaatactcaa aatgcttatt gtaatgtatt ttttcattaa gctagctgat ctttaatgat
     2941 atcacctaaa gttactttat catcattatt gatttcatta agaacttctc tttcttttat
     3001 tctaacaaga tttttaacac ttaggcgaat tctatttttc ttttcatcaa taaaaactat
     3061 agcagcttca atatcgtcgc caatttttaa attttcaagc atagaagtgc ttatatcttc
     3121 tttatgaatt aaagcatcaa catttttact tagctctaca aaaacaccaa aatctttaat
     3181 atcacggata gcacctttta caatatcgcc gactttatga attttagcat attcttgcac
     3241 tggagaactg cttaattctt ttgtacttaa tgatattttt tggttttctt catctatttt
     3301 gataattttt accttgattt tatccccttg agagaatttg tctttgcatt tatcgtttct
     3361 atcccaagaa gcatcttcat tatgcaataa accttcaata ccaccaagtt taacaaatgc
     3421 accaaaagaa gttactgagg taatttctcc ttcaaccaca tctgcaattt tgtaagattt
     3481 cataaattca tcaaaaggtc tagaaagtaa atttcttaaa gaaaccctta agcgtctttc
     3541 atttggattg atttcaatta cttcaacatc aatttcttga cctttattga tataatcttt
     3601 tggattttta atatttttat cccaagaaat ttcactgata tgtaaaaatc cttctatatc
     3661 atttcctaaa tccacaaaag caccataagg ctctatattt gatactatta ctttaatggt
     3721 atcacctata tcaagagtat cttttatctc gctccatgga tcaggtaaag ccgcttttat
     3781 agataaggat aaatgtttgc gttctttatc atactttatt actttaactg gaactttatc
     3841 gccctcttta taaagtgttc cagggtttac aggtcctttg taagaaattt cgctgtaatg
     3901 aacaaggcca tcaacacctc ctacatctac aaacatacca taagtggtaa ttttttttac
     3961 aataccttca attaaatctt cttgttgtgc tacattattg atcaattctt ttcgttttct
     4021 tctctcatca tctaaagttt ttttacgaga aacaatgata ctttgctcat ctttgtcgat
     4081 tttaataatt ttaactttaa acgttttgcc tataatatta tttgtttctt taaagccata
     4141 ttgagatttt ggtaagaaaa attcaacatc attttcatca acaactatca atccgccttt
     4201 attttttcca actactttta cggtaaaaat atcatcttga ttttcttgat agtttttaat
     4261 aaattcaata actttttctt ttctcaaagc ttttttatga gaaagtaaag atctgccacc
     4321 acgagaaccc ataacagcaa ctttaatact atcacctaca ttaaacaata gcttagaatt
     4381 gtcaccttgt atttcgctaa gagctaaaat accttcagat tttttaccta tatctacata
     4441 aacttcatca tttttgatct ctacaatcac accctctgtt gtagcctctt ctcttgattt
     4501 atcaaaagct tctaaaagct gtccaaaatc ttcttcctca agataatcat ctacgccgtc
     4561 ttgaactttt ttgttcacct cgctcattat ggtcctttaa aataattttt agaaattgat
     4621 tgattttacc ttatttttct ttaattagtg ttaagttttt ttatttttgt taattttttt
     4681 taaatttttg acttttttat tctatttaaa aacatttttt aattaattct aaaattttct
     4741 attttggcga taactttttg tataatccaa tcaggagtac tagcacctgc actaatgcca
     4801 caatgttttt tatctaaaaa ccattctttt tttaactctt cttcggtttc aattagatag
     4861 ctatcttcac aattggtttt tgcaatcaaa aaaagttgtt ttgtattggc tgagttttta
     4921 ccccctacaa caaccataac atcactttta agcgagagtt ctttaatggc atcttgattt
     4981 ttaaaggttg catcacatat agtgttaaaa actcttactt ctttggtttt aagtattaaa
     5041 aaatttacta tctccataaa atgctcaggc ttcttagttg tttggcttac tacagctatt
     5101 ttattaggaa gttttatatt ttgaagttct tttttatcca aaactacata agcttttgta
     5161 cttacataac ttttgactcc tttaacttcg ggatgatttt catctccaaa aataacaact
     5221 tcataaccct ccttactcat ttgctcgcaa atttgttgtg gttttgtaac aaaaggacaa
     5281 gtggcatcaa aaatttctat atcttttttt ctcaattctt ctaaatcttg ctttgtaata
     5341 ccatgagttc ttataatagc ctttttttca ttacttaaag cttgtatatt ttccaaagtt
     5401 ttgacattaa aatttttttg caaacgagaa atttcttcgt tattgtgaat aagagggcct
     5461 atagttgcag catcttttat ttgttctgct tttttaatag ctcttttaac accaaaacaa
     5521 aaaccatagt tttttgctaa ttcaataatc aatcctagct cctaaatttg ataaaatctc
     5581 tataaaattt ggaaaagaag tttttataca atcactatca tcaatctcga ttccacaaag
     5641 caaacctaaa atagcaaaac tcatagcaat acggtgatct ccatagcttt taatttttga
     5701 agattttagt tcgcatccac cttctatttc aaaaccatca tcaagttctc tagcttcaac
     5761 accacaaagc tttagatttt caaccatcac agcaatccta tcgctttctt taacgcgtaa
     5821 ttctttagca tttattaaac tagatttacc cttagccaaa gcaaaagcta tagccaaagc
     5881 aggcgcttca tctattaacc aagcgatatt atctttaact tctatgccat taagcttgct
     5941 agactccacc ctgatctcac caatagtttc aaaatcattt tgagttattg tcatttcaag
     6001 tttggcaccc attttttgca aaattttata cgcctctata cgagtaggat taagcaaaat
     6061 attttttaaa ataatttgag atttaggtaa aataatagct gctaaaacaa aataaaaagc
     6121 cgaagaagga tcattaggaa tgattatatt ttgagctttt aaaggttttt ttaaaggatt
     6181 tatttcaaga cttaagccat cattactaac ccttattgga gctttcatag cctttagcat
     6241 gttttcacta tgatttcgac taagagaaat ttcactaaaa gtgcatacat tatcagccct
     6301 aaaagcagat aaaatcatag ctgttttaac ttgagccgaa gaaatttcgc ttttaaaatt
     6361 aaaagctttt aatttttgac cttctataca aagtggagct aaatttgcct catttcttcc
     6421 ataaattcta gcgcctattt gagtaagtgg tttgcttatc cttctcatag gacgattgtt
     6481 taaatactta tctccactta aaacaaaaaa accagaaatt cctgctaaaa atcctatcat
     6541 caaacgcata gcagttcctg aatttccaca gtctaaaata caatttggag ataaaatttc
     6601 tttagggggt ataattttga cgcaagaatc tttttgttca attttagctc caagattttt
     6661 tataatttca agagtgttta aagtatcttg agctaagaga taattttgag ccttattttc
     6721 ttcttgtgtt aaaagcgaaa atatagcaaa acgatgagat atgcttttat ctgctgctat
     6781 attttcaagt atagcattta caggggtttg caatttgtaa attttcatct taaatcaaga
     6841 cccaaatttt taagagtatt taaaatttta tccatacatt cattcacttg attatcttct
     6901 agagttttat ttatatccct aaaagaaaaa cttatagtaa tgctataaaa ttctttaagg
     6961 ttttcatcac tataaatatc aactaaacga aaattttcaa gtatttctaa attcaattct
     7021 tcgatacaat ttttaatctg attgtattca aaacctttag gtattaacac gctaagatct
     7081 ctagtgatag ctgggaattt ggagtaaggc ttagctattt taaaatcttg cctgattaaa
     7141 tctaaatcaa gttcgcaaat atatgttttt ggtaaatctc tctcattttc tatttttaaa
     7201 tgcaaacggc ctataaaacc tactttaata tccgatagat aaatatctgc ttgttcataa
     7261 gggcttaaaa tattatattt tgatgatttt agtttaaaat cacctataat atttttaata
     7321 tctaaaagaa aatcataaaa ttgcaccgat tcaggtttgg ccttgttgga aattttagct
     7381 tcttctttta agccagaatg gataaatgca atacgattta attcttgatt attaacattg
     7441 aaaacagccc ctaattcaaa aagttt
//
LOCUS       DAPIWQ010000079         7398 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.079, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000079 DAPIWQ010000000
VERSION     DAPIWQ010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7398)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7398)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7398
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.079"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            63..791
                     /locus_tag="RJ267_001170"
     CDS             63..791
                     /locus_tag="RJ267_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDV7389029.1"
                     /translation="MIELKNVNKYYGTHHVLKNINLSVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKSKKEAEETAFKYLKVVGLLDKANVYPATLSGGQQQRVAIARSLCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     IPSEFFSNPKTERARLFLGKILKN"
     gene            813..1592
                     /gene="peb1A"
                     /locus_tag="RJ267_001171"
     CDS             813..1592
                     /gene="peb1A"
                     /locus_tag="RJ267_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HDV7389030.1"
                     /translation="MVFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGV
                     KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGANIGVAQAATTK
                     KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS
                     FEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKKWGL"
     gene            1594..2346
                     /locus_tag="RJ267_001172"
     CDS             1594..2346
                     /locus_tag="RJ267_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7389031.1"
                     /translation="MNESVGFVEHLRQILTSWGLYDENSISPFAVWKFLDALDNKDAF
                     INGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVIQIFF
                     LFYALPVLGIRLDIFTIGVLGVGVYHGAYVSEVVRSGILAVPRGQFEASASQGFTYIQ
                     QMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY
                     IFAAVLYFIICYPLAYFAKAYENKLKKAHLTR"
     gene            2357..3016
                     /locus_tag="RJ267_001173"
     CDS             2357..3016
                     /locus_tag="RJ267_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7389032.1"
                     /translation="MENVFNAQNIEFLMQGLFLTLKIALATCIISIVFGTFLAITKNY
                     GDRLSKFLAACYIDIFRNTPLLLWMLAACFVLPVFFGQFPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFGKFFTLFYIILPQTFRKIIPALLSQIVTTVKDTAY
                     LAGLGIAELTYNSKTILAKLTSFEEILAMIGVVAGIYFIICFSLSMLVRYYAKKTAYI
                     S"
     gene            3124..4053
                     /locus_tag="RJ267_001174"
     CDS             3124..4053
                     /locus_tag="RJ267_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HDV7389033.1"
                     /translation="MRGYKIFSGSANVEFARQVSKYLSLPLSDAGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCAPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIQAAGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKAKHF
                     KNAIIGSPDIGGVARARSVAKHLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKEKGAKSVMACCTHAVLSGKAYERIASGVLDELVVTDTIPLK
                     EQLPNIKVLSVTPVFAEVIRRVYHNESVNSLFI"
     gene            4220..6331
                     /locus_tag="RJ267_001175"
     CDS             4220..6331
                     /locus_tag="RJ267_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HDV7389034.1"
                     /translation="MTQLSTKILWLFVAALGAICFGYLALQNGESVSAIYLVVAAVCI
                     YMIGYRFYGSFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMRFIRPGRV
                     GEASIIGFVLLILAIHYGSVIAADPYWAKIFTLEAPTLAIVMMAYGFIASVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFDGTGPVFAGGVFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHTLAVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGTDVVNVAQTISSWGFSITPEEITTLTTNIGEYTILSRTGGAPTFAIGV
                     ALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGDI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATTIL
                     VKMDKARYTWVTLVPAVFVLVATLYGGIQKIMPYEEGNKIANAVSHVAAVSIQSQKIK
                     DLEFKLNNTKDEKEISTIRKEISIATQNKVGNLLNAILCVFFMIATLLVIISCIGICL
                     GKIKIPLKETKYIKIDEFQKI"
     gene            6312..6509
                     /gene="kcuS"
                     /locus_tag="RJ267_001176"
     CDS             6312..6509
                     /gene="kcuS"
                     /locus_tag="RJ267_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HDV7389035.1"
                     /translation="MNFKKFKYYYEKAERFFHPLVGLSSYDKYLEHMKQKHPGKIPKT
                     RGEFFKECLDKKYNSGGLNKC"
     gene            complement(6549..6962)
                     /locus_tag="RJ267_001177"
     CDS             complement(6549..6962)
                     /locus_tag="RJ267_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HDV7389036.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSC
                     INVTSALVTYVSVTRDGKKNPISEELKRIHGFLNA"
     gene            7024..>7398
                     /locus_tag="RJ267_001178"
     CDS             7024..>7398
                     /locus_tag="RJ267_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389037.1"
                     /translation="MNNFKEIAKLVRKYKERNNALYEFLDKEDVGEYFRSLISLSELK
                     QDKTTMLAILRRLIDLKEENLVQEWKKNNFKEDKIIELKHKFYEEVRKFYEKEHQNLI
                     NEIKEKKLLNNFYQSLIQGVHNI"
BASE COUNT         2424 a          948 c         1416 g         2610 t
ORIGIN      
        1 tttatttaat gataaaataa tttcaattaa ttttatattt agctaaaaat aaaggaaaaa
       61 acttgattga attaaaaaat gtaaacaaat actacggaac tcatcatgtt ctaaagaata
      121 ttaatctttc tgttaaagaa ggtgagaagc ttgttattat aggtccaagt ggaagtggaa
      181 aaagtacaac tatccgttgc atgaatgggc ttgaagaagt tagttcagga gaggtcgtag
      241 ttaacaatct tgttttaaat cataaaaata aaattgaaat ttgccgaaaa tattgtgcaa
      301 tggtttttca gcattttaat ttatatccac atatgacggt tttgcaaaat ttgaccttag
      361 ctccaatgaa acttcaaaaa aaatctaaaa aagaagctga agaaacagct tttaagtatt
      421 taaaagttgt aggtttgctg gataaagcaa atgtttatcc agcaaccctt tcaggtggac
      481 aacaacaacg cgttgctata gcaagatcac tttgtactaa aaaaccctat attttatttg
      541 atgaacctac ttcagccctt gatccagaaa ccatacaaga ggttttagat gtaatgaaag
      601 aaatttcaca tcaaagcaat actaccatgg tggttgttac acacgaaatg ggttttgcaa
      661 aagaagtagc agataggatt atttttatgg aagatggtgc tattgtggaa gaaaatattc
      721 ctagtgaatt tttctcaaat ccaaaaactg aaagagcgcg actcttttta gggaaaattc
      781 ttaaaaatta accaaaattg aaaggagaaa aaatggtttt tagaaaatct ttgttaaagt
      841 tggcagtttt tgctctaggt gcttgtgttg catttagcaa tgctaatgca gcagaaggta
      901 aacttgagtc tattaaatct aaaggacaat taatagttgg tgttaaaaat gatgttccgc
      961 attatgcttt acttgatcaa gcaacaggtg aaattaaagg tttcgaagta gatgttgcca
     1021 aattgctagc taaaagtata ttgggtgatg ataaaaaaat aaaactagtt gcagttaatg
     1081 ctaaaacaag aggccctttg cttgataatg gtagtgtaga tgcggtgata gcaactttta
     1141 ctattactcc agagagaaaa agaatttata atttctcaga gccttattat caagatgcta
     1201 tagggctttt ggttttaaaa gaaaaaaaat ataaatcttt agctgatatg aaaggtgcaa
     1261 atattggagt ggctcaagct gcaactacaa aaaaagctat aggtgaagct gctaaaaaaa
     1321 ttggcattga tgttaaattt agtgaatttc ctgattatcc aagtataaaa gctgctttag
     1381 atgctaaaag agttgatgcg ttttctgtag acaaatcaat attgttaggt tatgtggatg
     1441 ataaaagtga aattttgcca gatagttttg aaccacaaag ttatggtatt gtaaccaaaa
     1501 aagatgatcc agcttttgca aaatatgttg atgattttgt aaaagaacat aaaaatgaaa
     1561 ttgatgcttt agcgaaaaaa tggggtttat aatatgaatg aaagtgtagg ttttgttgaa
     1621 catttaagac aaattcttac ttcttggggt ttatatgatg aaaatagtat aagccctttt
     1681 gcggtatgga aatttttaga tgctttggat aataaagatg cttttattaa tggttttatt
     1741 tatactttag aagtaagcat tcttgctttg cttatagcta caatttttgg aactataggc
     1801 ggagttatgg ctacaagtag atttaaaatt atcagagcct acactagaat ttacgtagag
     1861 ctttttcaaa atgttccttt ggtaatacaa attttctttt tgttttatgc cttgcctgtt
     1921 ttaggtataa ggcttgatat atttactatt ggtgtattgg gtgttggggt gtatcacgga
     1981 gcttatgtaa gcgaggtggt tagaagtgga attttggctg tgccaagagg tcagtttgaa
     2041 gcttctgcgt ctcaagggtt tacttatatt caacaaatgc gttatattat agtacctcaa
     2101 accattagaa ttattttacc accgatgaca aatcaaatgg taaatttaat taaaaatacc
     2161 tctgtattgc ttattgtagg tggagctgag ttaatgcatt ctgctgatag ttatgcagct
     2221 gattatggaa attatgcgcc agcttatata tttgcagcgg ttttatattt tataatttgc
     2281 tatcctttgg cttattttgc aaaagcttat gaaaataaat taaaaaaagc acatttaacg
     2341 agataaaggg ttgttaatgg aaaatgtttt taatgcgcaa aatattgaat ttttaatgca
     2401 aggtttattt ctgacattaa aaatagcctt ggcaacttgt attatttcga ttgtttttgg
     2461 aactttttta gctataacta aaaattatgg agatagatta agtaaatttt tagcagcttg
     2521 ctatatagat atttttagaa atactccttt attgctatgg atgctcgcag cttgttttgt
     2581 tttgcctgta ttttttggac aatttcctca agctttttgg ggtactatag gattttcact
     2641 ttatacgagt tcggttatgg ctgaaattat tagaggcgga ttaaattcta taccaaaagg
     2701 tcagtttgaa gcagcttatt cacaaggttt tggtaaattt tttactcttt tttatattat
     2761 tttaccacaa acttttagaa aaataatacc tgctttatta tctcaaattg taaccactgt
     2821 aaaggataca gcttatttag caggtctggg tatagctgaa cttacttata attcaaaaac
     2881 tatattggca aaactaacaa gttttgaaga aattttagcg atgataggtg ttgttgcggg
     2941 aatttatttt ataatatgtt tttcactttc tatgttggta agatattatg ccaaaaagac
     3001 agcttatatt tcttaaaaaa gcttatattt ttatataagc tttttaaatt tacagcagtt
     3061 tttaacattt tttttattaa aatcttttgt attaattcat aattttattg attaaggttt
     3121 tttatgcgag gttataaaat tttttcaggc tcagctaatg tcgaatttgc aagacaagtt
     3181 tctaaatatc tctccctgcc tttaagtgat gctggagtaa agcggtttag tgatggagag
     3241 attagcgttc aaattgatga gagtgtacgc ggaaaggatg tttttattat tcaaagtact
     3301 tgcgctccta caaacgataa tttaatggaa cttttaattc ttacagatgc tttgcgtcgc
     3361 tcaagtgcaa attcaattac ggctattatc ccatattttg gctatgcgag acaagataga
     3421 aaagcaaatc ctagagtgcc aattactgct aaacttgtgg ctaatttgat tcaagcagct
     3481 gggattgatc gcgtagctac gatagatttg catgcaggac aaattcaggg tttttttgat
     3541 attccagtag ataatcttta tggaagtata gtttttaatg attacattaa agccaaacat
     3601 tttaaaaatg ctattatagg aagtccagat atagggggtg ttgcaagagc taggagtgtt
     3661 gcaaagcatt taggacttga tatagttata gttgataagc gtcgtgaaaa agccaatgaa
     3721 agtgaagtaa tgaatattat tggagatgta aaagataaag aagttatctt agtggatgat
     3781 attattgata ctgctggcac tatagttaaa gccgcggaag ctttaaaaga aaaaggtgca
     3841 aaatctgtta tggcttgctg tactcatgca gttttaagtg gaaaagccta tgagagaata
     3901 gcaagcggag ttttagatga gcttgtggta acagatacta tacctttaaa agagcaatta
     3961 ccaaatatta aagtattaag cgttacacct gtttttgctg aagtaatacg tcgtgtttat
     4021 cataacgaaa gtgtaaattc tctctttatt tagattaaaa aagcttaaag attattttta
     4081 agcttttcat ttttatgcta cttaaagaaa caaaaaacat atattttttt aaaaatgtga
     4141 aaaaactaaa catctttcta tacaatttaa tctataaatc tgctattctt tgaaaatatt
     4201 ttattttctt aggagaaata tgactcagtt aagtactaaa attttatggt tgtttgttgc
     4261 agctttaggc gctatttgtt ttggttattt agctttacaa aatggcgaaa gtgtatcagc
     4321 gatttatttg gtggttgctg ctgtatgtat ttatatgata ggatatagat tttatgggag
     4381 ttttgtagct tataaggttt tagaacttga taaaaatcgt gcaacaccag cacttgtaga
     4441 aaatgatggg cgtgattttg tgcctacaaa taaagctgta ttatttggac atcattttgc
     4501 tgctattgca ggagcaggtc cattagtagg acctatcttg gccgctcaaa tgggatattt
     4561 gccttctatg ctttggattt tagtaggagg agttttagcg ggtgctgtgc atgattttgt
     4621 tgttcttttt atatctactc gtagaaaagg tagaagtctt ggcgagatga ttaaggatga
     4681 gatgggtaaa tttacaggtg gagttgctat ggtggcgatt tttggcatta tgcttattat
     4741 tattgccatt ttagctatgg tggttgtaaa agctttagca gaatctccat ggggtttatt
     4801 tactatcgca atgacgattc ctatagcaat atttatggga atttatatgc gttttatccg
     4861 tccaggtaga gtaggggagg cttctataat aggttttgtg cttttaattt tggctattca
     4921 ttatggtagc gttatagctg ctgatcctta ttgggctaaa atatttactt tagaagctcc
     4981 aactttggca attgttatga tggcttatgg ttttattgct tctgttttac ctgtgtggtt
     5041 tttacttgct ccaagagatt atctttcaac ttttttgaaa atcggtgtta ttgtggtaat
     5101 ggctgtagct attgttttgg ttgctcctga tttacaaatg ccaaaagcaa atactcagta
     5161 ttttgatgga acaggtccag tatttgcagg tggagtgttt ccatttttat ttattaccat
     5221 tgcttgtggt gcgatcagtg gttttcatgc tttgatttct agtggaacta ctcctaaaat
     5281 gcttgaaaac gaaactcata ctttggctgt tggatatggc tctatgcttg ctgagagtgc
     5341 tgtggcgatt atggctttaa tttgtgcttg tattttacat ccaggtcttt attttgctat
     5401 aaattcaagc tctgctttga taggaacaga tgttgtaaat gtagcacaaa ctatttcaag
     5461 ttggggattt agtattactc ctgaagaaat tactacttta accacaaata taggagagta
     5521 tactatactt tcaagaacag ggggagcccc gacttttgct ataggtgtag ctttgatctt
     5581 gcatgaactt tttggcggcg tggatttgat ggctttttgg tatcattttg ctatattgtt
     5641 tgaagcttta tttattttaa cagcggtgga tgctgggaca agggcttgtc gttttatggt
     5701 gcaagatata ttgggtaatg tttataaacc tttaggagat attcataatt atccagctgg
     5761 acttttggct acggctttaa gtgttgcagg ttggggatat tttctttatc aaggcgccat
     5821 tgatcctaag ggaggaattt atacactttg gcctcttttt ggcgtgagca atcaaatgct
     5881 tgcgggtatg gctttgcttc ttgctacaac tatacttgta aaaatggaca aggcaagata
     5941 tacttgggtt actttagtac ctgcggtatt tgtcttagtg gcaactctgt atggaggaat
     6001 tcaaaaaatt atgccttatg aagaaggcaa taaaatagca aatgcggtaa gtcatgtagc
     6061 cgccgttagc atacaaagtc aaaaaattaa agatttagaa tttaaattaa ataatactaa
     6121 agatgaaaaa gaaatttcta caattagaaa agaaatttca atagccactc aaaataaagt
     6181 tggaaattta cttaatgcaa ttctttgtgt gttctttatg atagctacct tgcttgttat
     6241 aatttcttgt ataggaattt gcttaggtaa aattaaaatt cctcttaaag aaactaagta
     6301 tattaagatt gatgaatttc aaaaaattta agtattatta tgaaaaagcc gaaaggtttt
     6361 ttcatccctt ggtgggactt tctagttatg ataagtattt agaacacatg aaacaaaaac
     6421 atccaggaaa aattccaaaa accagagggg aatttttcaa agaatgtcta gataaaaaat
     6481 ataatagtgg cggtttaaat aaatgctgat aagcttaaag gataaagttt tatcatacaa
     6541 aataagcttt aagcatttaa aaagccatga attcttttaa gttcttcact aataggattt
     6601 ttctttccat ctcttgtaac acttacataa gttactaaag ccgaagttac attaatgcaa
     6661 gaagtacaac cttgagaatc cactctttga gctgtgactt ctacttcaac gctgattgaa
     6721 gtgttgccca catttacaac tttagagtaa caagaaatta tatcgcctat aaaaacaggt
     6781 tctttaaaaa ctactttatc catagagatg gttacaacgc gttcaggaga aagttctctt
     6841 gctgcgatag ctcctgctaa atcgatttgt gaaagtatcc atccgccaaa aatatttcct
     6901 gctggatttg tgtcacttgg catagctaca atttttaatt ttggttctcc catatctctc
     6961 atttttactc cttattttaa aaaatgaatt ataattaaaa aagttaaaaa ggagaataaa
     7021 agtatgaata attttaaaga aatagctaaa ttggttagaa aatacaaaga aagaaataat
     7081 gcgttatatg agtttttaga caaagaagat gtgggcgagt attttagatc tttgatttct
     7141 ttaagtgagt taaaacaaga taaaacaact atgctagcca tacttaggcg tttgattgat
     7201 ttaaaagaag aaaatttagt tcaagagtgg aaaaaaaaca actttaagga agataagatt
     7261 atagagttaa aacataagtt ctatgaagag gttagaaagt tttatgaaaa agaacatcaa
     7321 aatttaatta atgaaataaa agagaaaaaa cttttaaata atttttatca gtccttaata
     7381 caaggagtgc ataatata
//
LOCUS       DAPIWQ010000080         7396 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.080, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000080 DAPIWQ010000000
VERSION     DAPIWQ010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7396)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7396)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7396
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.080"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..551)
                     /locus_tag="RJ267_001179"
     CDS             complement(<1..551)
                     /locus_tag="RJ267_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDV7389038.1"
                     /translation="MLKVCNLSKFYELKKHWYLKKERHIIFDNVNFSLNENDNLIILG
                     KSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALN
                     PYKKIKNLIQDGLENFNLQKNDDLILEFFDFFSLKKQILEQKSYELSGGEATRVGLIR
                     ALVLNPKLLILDEITSAFDIKTS"
     gene            complement(544..1254)
                     /locus_tag="RJ267_001180"
     CDS             complement(544..1254)
                     /locus_tag="RJ267_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7389039.1"
                     /translation="MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     ALVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKEIKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKENASKIISILKELKNTTALVCITHDLNLVNSLADEILMLE
                     KNSSNLYSLDEFLRYYNA"
     gene            complement(1251..2045)
                     /locus_tag="RJ267_001181"
     CDS             complement(1251..2045)
                     /locus_tag="RJ267_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7389040.1"
                     /translation="MILFKFLIILAPLIFLFLCALFAPFLASFDILSTHLENLHQAPN
                     FTYILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARCFFYVFWMRI
                     LEFFLALPAFLLMMFFQSMITSDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKA
                     NIVLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGT
                     LLSESSKAVFIGAWWMILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            complement(2032..2976)
                     /locus_tag="RJ267_001182"
     CDS             complement(2032..2976)
                     /locus_tag="RJ267_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7389041.1"
                     /translation="MLKRLVFSIFIAFFSTFLCFVLLHFSKGSIAYANGVNSQSKEFV
                     QRIEQNLGLDKPLLEQYKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFSAL
                     MLLFLLSVFLALLGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPV
                     MGSSDIGFEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARA
                     LREKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYKGLGSLLFKSIIFKDY
                     PIVLALIFFSVLLAAFFTFLSDIVARILNPRLRRLDFV"
     gene            complement(2976..4511)
                     /locus_tag="RJ267_001183"
     CDS             complement(2976..4511)
                     /locus_tag="RJ267_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDV7389042.1"
                     /translation="MLRWFVLLFLLFLNLEAKIPKDTLIIAVENEIARINPAYSEDHD
                     AVINLVFSGLTRFDENMSLKPDLAKSWDISKDGLVYDIFLRDDVLWHDGVKFSADDVK
                     FSIEAFKNPKNNSSIYVNFEDIKSVEILNPSHVKITLFKPYPAFLDALSIGMLPKHLL
                     ENENLNTSSFNQNPIGTGPYKFVKWKKGEYVEFKANEHFYLDKVKTPRLIIKHIFDPS
                     IASAELKNGKIDAALIDVSLLNIFKNDENFGILREKSADYRALMFNLDNEFLKDLKVR
                     QALNYAVDKESIVKNLLHDYAFVANHPLERSWANSKNFKIYKYDPKKAEDLLVSAGFK
                     KNKDGNFEKDGKILEFEIWAMSNDPLRVSLAGILQSEFRKIGVVSKVVAKPAGSFDYS
                     KVDSFLIGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTSN
                     LEERKKYYKDFIDALYENPPFIFLAYLDFALVYNKDLKGIKTRTLGHHGVGFTWNVYE
                     WSK"
     gene            complement(4621..7392)
                     /locus_tag="RJ267_001184"
     CDS             complement(4621..7392)
                     /locus_tag="RJ267_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HDV7389043.1"
                     /translation="MANFKAFYKEAKYIFKDRIFNDYARCYAYGIDASCYFYIPKIVI
                     IAKNEDEIKQIIQLANTYKTPITFRAAGTSLSGQSSCDGVLVVIKFAFKKIKINKDAN
                     EITLGCGVVGIHANESLAFLKKKIGPDPATINSALIGGIINNNSSGMCCGTKDNSYKT
                     LRSIRVILANGSMLDTSDALSVARFKDENKKLINELREIKEEINANKELKDLIIKKFK
                     IKNTTGYSLNAFVDYDDEIDILAHLLIGSEGTLGFVSEVKLAVLDDLEFKACALLFFD
                     NINNAANTIKEFAKVDFISSAEIMDYASLKAASTYDELRDILADIKEGNTCVLIQSEH
                     SNELKLDENINKIKEISKLAYKSYFSKNKAEYDLWWKIRKALLPIAASLRKAGSTVIT
                     EDVCFNIEDLADGIKSIQELFYKYGFGDNGIIFGHALAGNIHFIITPDLNNKLEFDNF
                     SNLVKEMSNIVASYGGSIKAEHGTGRMVAPFVEVEWGKQAYLINKKIKSIFDKDSLFN
                     PDVIISDDKDIYKKNIKQVSWIDEKLNTCMECGFCERFCPSNEYTITPRQRIAILREI
                     KRLESLNDDESKAKLKDIKKYYNHLVDSSCAACGVCSFSCPLGINFADFSLKYRKNNI
                     GFISKILGNLAYKNHEKTLKIAKFSLSIANKFDNLSLDNKLEKASNFLSIIPRTRAYL
                     PKVNDYELKSHKRVCNVVYFTSCLNKSFKPNEKMHDKRSLQEVFESLCKKANIGIIYA
                     PNDLCCGKAYENFQDIQDKNIQKINDFLSNIDSPIVLDHSACSAKLISDHSKYEIYDL
                     SEYLLKFIAPKLRIDKINENVGLYIMCAARKLDLNENIIKLTKLCTNGKVLIDNDTYC
                     CGFAGYKGFFKPQLNISATKGFKKFYAKTNIKRGFSTSSTCEIGLSDATGISWQHIAY
                     LLDECSEAI"
BASE COUNT         2733 a         1333 c          819 g         2511 t
ORIGIN      
        1 ttagaagttt taatatcaaa cgctgaagta atttcatcta aaatcaacaa tttaggattt
       61 aaaaccaaag cacggataag acctacacgt gtggcttctc ctccgcttaa ctcataggat
      121 ttttgttcta aaatttgttt ttttagacta aaaaaatcaa aaaattctaa aatcaagtca
      181 tcattctttt gtaaattaaa attttccaaa ccatcttgta taagattttt gattttttta
      241 taagggttta aagccatttt ttgatcttga aagcaatatt gaatttgctt tcttaaaagt
      301 ctttgtttgt ttttatcaag cttgtgtaag ttaagatttt cataccatac ctcaccctca
      361 cttggatctt ctaaaaaaca aagaattcta gctaatgtgc ttttacctgc accactttta
      421 cctaaaatta ttaaattgtc attttcattt aaagaaaaat tgacattatc aaaaataata
      481 tgtctttctt tttttaaata ccaatgcttt ttaagctcat aaaacttact taaattacaa
      541 actttaagca ttataatacc ttaaaaactc atctaagcta tataaatttg aactattttt
      601 ttctagcata agaatttcat ctgctaaaga atttaccaaa tttaaatcat gagtgataca
      661 aactaaggct gtagtatttt ttaattcttt taaaatcgat ataatcttag aagcgttttc
      721 tttatccaaa gaagctgtga tttcatcaca aattaaaatt tggggttgat ttaataatgc
      781 caaagctagg ctcacccttc ttgccatacc caaacttaat tcattagcat aagaatgcca
      841 caaacgatca agattttcaa atcctaattt ttgaaaataa gaaaaagcgt aatcttttat
      901 ttctttttgt tttaattttg tatgagtttt taaaacaaga tgacataaat ttccaatatc
      961 caaataagga taaagactaa gctctgcatc ttgcaaaaca agtgccactt tagaacgaaa
     1021 atttctaagc tcttctttat taaaattaaa aatacaagaa ttatgaaaac ttaattcatc
     1081 aaaacttatt gtgaaattag aatctaaaag tcttaccaaa gcttttccta acaaactttt
     1141 gcccactcca ctttgtccta gtatcattaa agttttgcct gtttttatat ctaaattaat
     1201 atccttaagt aataaattat tcttcaaact gatatttaaa tttcttacct tcaagatctt
     1261 ataccccaaa ttttttgtaa aaaattaccc aaccataaaa gaggtaaaaa caacaaaagc
     1321 aagcttaaaa gtggaaaaag tatcatccac caagcgccta taaaaactgc ttttgaagac
     1381 tcactcaaaa gagtacctaa agttggaatt tcaaatccta aacccagtcc aaaaaaactc
     1441 aaagtagctt ctgtggctat agcatgaacg atattaaata taaaaagtgt aaaaatcagt
     1501 gtttttaaag caggtattaa atctttaaaa aaagctctaa atttagttct tccaagcact
     1561 atatttgctt tgtaaaaatc taaattttca agtcttttta attcactttc tataattctt
     1621 gctatgaaac accaatgaat taaagcgatt aaaaaaatca tcaaaaacac atcagaagtt
     1681 atcatacttt gaaaaaacat cataagtaaa aaagcaggca aggctaaaaa aaactctaaa
     1741 atacgcatcc aaaaaacata aaaaaaacat cgcgctaaaa acaaatagca caaagcaaag
     1801 ataatagaca ataaagatcc accaacacct ataatcaaag aatttctcaa agcaaaaagc
     1861 aaacgagaaa acaaatctct gcctaaaaaa tcagtcccta aaatataagt aaaattagga
     1921 gcttgatgca aattttctaa atgagtgctt aaaatatcaa aagaagctaa aaaaggtgca
     1981 aacaaggcgc ataaaaacaa aaaaattaaa ggcgcaagaa tgataagaaa tttaaacaaa
     2041 atcaagcctt cttaatctag gatttaaaat cctagctaca atatcactta aaaatgtaaa
     2101 aaatgctgca agcaaaacac taaaaaatat aagcgcaagc acaataggat aatctttaaa
     2161 aataatactt ttaaaaagta aagatccaag ccccttgtaa gcaaagacac tttctaccac
     2221 ataagttccc atcataaaac ttaaagcact tcccccaaaa taagccacaa taggacttaa
     2281 agaatatttc aaaactaaaa aataaatatc tttctccctt aaagccctag cgtataaatt
     2341 ttgaataaaa atttgagaaa aactttcatt gataaaattt ctagcaatcc ttaaaaataa
     2401 cgccaaatgt gataaaacga gcaccaaaac aggcaaaatc aaatgctcta aacgatttaa
     2461 aaaatcatct tcaaagccta tatcactact tcccataaca ggcaaaattt tccaaaaaat
     2521 tccaaaaatc aaaacaaaca ataaagccaa aacaaaagga ggtaaagcaa aaaaattaaa
     2581 agctaaaaaa gtgatgattt tatctataaa actttcttta taataatatc ccaaaagtgc
     2641 caaaaaaaca ctgagcaaaa ataaaagcat taaggcacta aaacccaaaa taaaagtatt
     2701 aaaaattctt tcttttataa gctttaaaac actttctcca cttaaaaaag aaacccctaa
     2761 gtcccctttt aaagccttaa aaagccaaat tttatactgc tctagcaaag gcttatcaag
     2821 ccctaaattt tgttctattc tttgaacaaa ttctttactt tgtgaattaa ctccattagc
     2881 ataagctata ctgcctttac taaaatgaag taaaacaaaa cataaaaaag tgctaaaaaa
     2941 tgctatgaaa atactaaaaa ctaagcgttt tagcactatt tactccactc ataaacattc
     3001 caagtaaaac ccactccatg atgacctaaa gtccttgttt tgataccttt taaatcttta
     3061 ttataaacta aagcaaaatc aagataggct aagaaaataa aaggaggatt ttcatacaaa
     3121 gcatctataa aatctttata atattttttt ctctcttcta aatttgaagt atttcttgct
     3181 ttttgcaagg ctatatccac ttttttatca tgataatgtc caaaattcca accctcatca
     3241 tttaaagcac tatcttgcga actttcaaat accctaaaag tgtgaaaatc aggatctaaa
     3301 ggacttcccc agcctattaa aaaactatct actttagaat aatcaaaact tccagcaggt
     3361 ttagccacca ccttgcttac aactcctatt tttctaaatt cgctttgcaa aattccagct
     3421 aaacttaccc ttaaaggatc attgctcatc gcccaaattt caaattctaa aattttccca
     3481 tctttttcaa aatttccatc tttatttttc ttaaaacctg cactcacaag caaatcctcg
     3541 gcttttttag gatcatattt gtaaatttta aaattcttag aatttgccca agaacgctct
     3601 aaagggtgat tagctacaaa agcataatca tgtaaaagat tttttactat actttcttta
     3661 tcgactgcgt aatttaaagc ttgtcttact tttagatctt ttaaaaattc attatctaaa
     3721 ttaaacatta aagcccgata atcagccgat ttttcacgca aaattccaaa attttcatca
     3781 tttttaaaaa tatttagcaa agaaacatcg attaaagctg cgtctatctt gccattttta
     3841 agctcagcac tagctataga aggatcaaaa atgtgtttta taataagtct tggagttttt
     3901 accttatcaa gataaaaatg ttcattggct ttaaattcaa catattcacc ttttttccat
     3961 tttacaaatt tataaggacc tgtacctata ggattttgat taaaagagct tgtgtttaaa
     4021 ttctcatttt caagcaaatg tttaggaagc attcctatgc ttaaagcatc taaaaatgca
     4081 ggataaggtt taaagagtgt gatttttaca tgagaaggat ttaaaatttc cacactttta
     4141 atgtcttcaa aattgacata aatagaagaa ttgtttttag gatttttaaa ggcttctata
     4201 ctaaatttca catcatcagc actaaatttg actccatcat gccataaaac atcatctctt
     4261 aaaaaaatat cataaacaag cccgtcttta ctaatatccc aagacttagc caaatcaggt
     4321 tttaaactca tattttcatc aaaacgcgta agccctgaaa atacaagatt aatcactgca
     4381 tcatgatcct cgctataagc aggatttatc cttgcgattt cattttcaac tgctataata
     4441 agtgtatctt ttggaatttt agcctcaaga ttcaaaaaca ataaaaatag taaaacaaac
     4501 catctaagca cttgtaactc ctcaaattta aaattttaaa gaattataaa ataaaaaata
     4561 agaagccaca agctctatgg ggggataatt tgctttaaat tatggagttt tatttatcaa
     4621 ttaaattgct tcactgcatt catccaataa atacgctata tgctgccaag atatacccgt
     4681 agcatcgctt aatcctatct cgcaagtgct tgatgtacta aacccgcgct taatatttgt
     4741 tttggcataa aattttttaa agccttttgt agcactaata tttaattgag gcttgaaaaa
     4801 gcccttgtat ccagcaaacc cacaacaata ggtatcatta tctattaata cttttccatt
     4861 cgtacatagc tttgtaagct taattatatt ttcatttaaa tcaagctttc tagcagcaca
     4921 catgatatat aatcctacat tctcattgat tttatcaatg cgtaacttgg gagcaataaa
     4981 ttttaataaa tactcgctta aatcataaat ttcgtacttt gaatgatcac taattaactt
     5041 agcactacaa gcactatgat ctaacactat gggtgagtct atattgctta aaaagtcatt
     5101 gattttttgt atatttttat cttgaatatc ttgaaaattc tcataagcct taccacaaca
     5161 taaatcattg ggtgcataaa taatgcctat atttgctttt ttacacaagc tttcaaatac
     5221 ttcttgcaaa cttcttttat catgcatttt ttcatttggt ttaaagcttt tattaagaca
     5281 gcttgtaaaa taaaccacat tgcaaactct tttatgactt tttagctcat aatcattcac
     5341 cttaggcaaa tacgccctag ttcttggtat aatgctaaga aaattgcttg ctttttcaag
     5401 cttattatca agacttaaat tatcaaattt atttgcgata cttaatgaaa atttagcaat
     5461 ttttagagtt ttttcatgat ttttatatgc tagatttcct aaaattttag atataaatcc
     5521 tatattattt tttctatatt ttaatgaaaa atcagcaaaa ttaatcccca aaggacatga
     5581 aaaagagcac accccacaag cagcacaaga gctgtctact aaatgattgt aatatttttt
     5641 aatatccttt aattttgctt ttgactcatc atcatttaag ctttcaaggc gtttaatctc
     5701 tcgtaagatc gcaattcttt gtcttggagt aattgtatat tcatttgatg gacaaaatct
     5761 ttcgcaaaat ccacattcca tacaggtatt taatttctca tcaatccaac tgacttgttt
     5821 gatatttttc ttataaatat ctttatcatc gctaatgatt acatcgggat taaataaact
     5881 atccttatca aagatacttt tgattttttt attgatcaaa taagcttgct taccccactc
     5941 tacctccaca aaaggtgcca ccatacgccc tgtgccgtgt tcagctttta tacttccacc
     6001 ataagaagct actatattag acatttcttt aactagattt gaaaaattat caaattcaag
     6061 cttattgttt aaatccggtg tgataataaa atggatattg cctgctaatg catggccaaa
     6121 aatgattcca ttatcaccaa agccatattt ataaaacaat tcttgaatgc ttttaattcc
     6181 atcggctaaa tcctcgatat taaaacacac atcttcagta attaccgttg aacctgcctt
     6241 tctaagacta gctgctatag gcaagagtgc ttttctaatc ttccaccata aatcatattc
     6301 ggccttattc ttgctaaaat atgacttata agccagtttg gaaatttctt ttattttatt
     6361 tatattttca tcaagcttaa gctcattact atgctcactt tggatcaata cacaagtatt
     6421 gccctcttta atatcagcta aaatatctct taactcatca taagttgatg cagcttttaa
     6481 acttgcatag tccattattt cagcagaact tataaaatca actttagcaa attcttttat
     6541 agtgtttgca gcattattga tattatcaaa aaacaataaa gcacaggcct taaattccaa
     6601 atcatccaaa acagcaagct taacttcgct tacaaatccc aaagtccctt cagagccaat
     6661 aagcaagtgt gctaaaatat ctatttcatc atcataatca acaaaggcat taaggctata
     6721 acctgtggtg tttttgattt taaatttttt gattattaaa tcttttaatt ctttattggc
     6781 attaatctct tctttgatct ctctaagttc attaattaat tttttatttt catctttaaa
     6841 tcgagccaca cttaaagcat cgctggtatc aagcatacta ccatttgcca aaatcaccct
     6901 aatacttctt aaggttttat agctattatc cttagttcca cagcacattc cgcttgaatt
     6961 gttatttata atccctccaa ttaaagctga atttatagta gctggatcag gtcctatttt
     7021 tttcttcaaa aaagcaagac tttcattagc atgaatgcct actacaccgc atcctaaagt
     7081 aatttcgtta gcgtctttgt taatttttat ttttttaaag gcaaatttaa tcactacaag
     7141 tactccatca caagagcttt gtccacttaa acttgtacct gctgctctaa atgttatagg
     7201 agttttataa gtatttgcta attgaataat ttgcttaatt tcatcttcat ttttagcaat
     7261 aatcactatt tttggaatat aaaaataaca cgacgcatca atgccataag catagcatct
     7321 agcataatca ttaaaaattc tatccttaaa aatatactta gcctctttat aaaaagcttt
     7381 aaaatttgcc atagtc
//
LOCUS       DAPIWQ010000081         7385 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.081, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000081 DAPIWQ010000000
VERSION     DAPIWQ010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7385
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.081"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            1..825
                     /locus_tag="RJ267_001185"
                     /pseudo
     CDS             1..825
                     /locus_tag="RJ267_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305525.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
     gene            835..2880
                     /gene="kdpB"
                     /locus_tag="RJ267_001186"
     CDS             835..2880
                     /gene="kdpB"
                     /locus_tag="RJ267_001186"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HDV7389044.1"
                     /translation="MSKKQNKLITKEILNNAIKGAFLKFDPRFMVKNPVMFMVEVGSI
                     LTLILSIFPTLFNGNSDERIYNILITFILFIILFFANFAESIAEGRGKAQAATLRQSK
                     KDSKARHIKSDGSEEMLNSSELKIGDIVLVKAGELIPNDGEIIEGTASVDESAITGES
                     APVMREAGGDFSSVTGGTTVLTDFLKIKILVGAGESFLDKMINLVEGAARQKTPNEIA
                     LNTLLIVLSLSFLMVVVSLYPFMQFLGVSLPISWLVALLVCLIPTTIGGLLSAIGIAG
                     MDRVTRFNVIALSGKAVESCGDVDTMILDKTGTITFGNRLANEFYEVQGISKEEMIKA
                     CVLSSLKDETPEGKSIVALAQKMGYELEGNDIKEFIEFSAQNRMSGVDLQDNTKIRKG
                     AFDAIRAYISEMNGKIPSDLETKVMEISNLGGTPLVVCKNEKILGVIYLKDTVKPGLK
                     ERFDELRKMGIKTLMCTGDNPLTAATITKEAGLDGFIAECKPEDKIKAIKKEQAQGKI
                     VAMTGDGTNDAPVLTQADVGIAMNSGTQAAKEAANMIDLDSNPTKILEVVEIGKGLLI
                     TRGSLTTFSMTNDIAKYFAILPAMFSVVLPQMQILNIMHLATPKSAILSALIFNAIII
                     PLLIPIAMRGVKFKPMKSEHLLLRNLSIYGLGGMIAPFIGIKIIDIPTAWILRILGV"
     gene            2916..3405
                     /locus_tag="RJ267_001187"
                     /pseudo
     CDS             2916..3405
                     /locus_tag="RJ267_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246928.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit C"
     gene            3482..5302
                     /locus_tag="RJ267_001188"
     CDS             3482..5302
                     /locus_tag="RJ267_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
                     /protein_id="HDV7389045.1"
                     /translation="MQRQSPEQILKKLEVKAKEEEKNKLVKLKIFLGYAAGSGKTYAM
                     LSEARTLRDNGVDVVLGYIEPHDRPETMALAQGFESIANLEIPYKNIVLKEFDLDATL
                     KRKPALVLVDELAHTNAKGLRNEKRFQDIEELLKAGIDVYTTLNIQHLESLNDLVANI
                     SKIEVKERIPDRIFDEADQVELVDIEPNKLLKRMQDGKIYKEKQAKLALENFFRQERL
                     IALREIALRRLASRVNLRASEQRLINDDLAYHTGEHILVCINASNAKVIRAAARLALA
                     FHAKLSALYIKNPNIKEAKALEENIELAKSFDAKIISVYDDIARQIAEYSSLSNVSKI
                     VLGKNKDKKSLKKRFLKLSLKKHPILIYILSMKIKFLLLKYEVKKSFDFLGFLKITGV
                     LLLATFIAFVFHKFNTQPSNIVMIFILAVFASSFISDNKIFAFYSSLVSVLIYNFFFL
                     EPIFSLKVHDSGNIITFTTMFIVGFLTAVFTRRLKLQSKELTKRAYRTAILLENSENL
                     ARVKSKQELWEQLGNQALKLLNLPIIIYPINKNNILSKPLLFFNDDKQMLKNCFSADE
                     IAIAQWVATNKERAGVCTNTLPNANAMYLPIEDGKKLKGL"
     gene            complement(5404..7377)
                     /gene="uvrB"
                     /locus_tag="RJ267_001189"
     CDS             complement(5404..7377)
                     /gene="uvrB"
                     /locus_tag="RJ267_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HDV7389046.1"
                     /translation="MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNVLENKKGKDLKRFILYPTSQFSVGEARLKQAIKDIKTELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPYTLFDYFAIKNRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKDCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKIIQRNERVL
                     VTVLTKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQEAYNQKHNITPTSVKRHIEESLKNEENLGEIYRKGKKFEKMPANERAKI
                     VKELRKQMLEAAKALEFEKAATLRDEINKLRDL"
BASE COUNT         2433 a         1049 c         1330 g         2573 t
ORIGIN      
        1 tggtgcaatg gggattattt ttatcatttc tttgctttta atttatttta gcgaaaaaat
       61 gtcaaatcca aatttggatt ctttgggttt aaatgcaaat ttgggaaatt tggaaggtaa
      121 agaaataaga tttggcacag atggttcgag tttatttagt gctgtaacta ctgcttttac
      181 tacaggaagc gtcaataata tgcacgatag tttaaatcct ttaagcatca gtgctacttt
      241 gctaaatatg atgctaaatg tagctttcgg tggcgaagga gtagggctta tgaatatgat
      301 tatttatgtg ctcttaaccg tgtttatttg tgcattaatg ataggtagaa ctccagaatt
      361 cttgggtaaa aaaatagaaa gcgcacaaat gaagcttata gctttggtaa ttcttatcca
      421 tcctttatta atccttgttt taagtgcatt agctgttgtt tttgcaaaag atagtataag
      481 caatcctagc tttcatggct tggctcaaat tttgtatgaa tttagttctt cggcagcaaa
      541 taatggttca ggacttgaag gtttaaaaga tgataattta ttttggaatt taagcacagc
      601 ttttgctatg ttttgtgggc gttatttggt tttaatagct cagcttgcta tagctggatc
      661 gcttttggct aaaaatacac aagaaaatac tgcaaattct ttaaaaacgg ataatttaac
      721 ttttatgttt gtgcttgttt gtattatata tatttttgct gcacttactt ttttccagtg
      781 cttactttat caagcgttgc agaatattta tctttatggc attaaggaga gtcaatgtct
      841 aaaaaacaaa ataaactcat tacaaaagaa attttaaata atgccataaa aggagcattt
      901 ttaaaatttg atccacgctt tatggtaaaa aatcctgtta tgtttatggt ggaagttgga
      961 tcgattctta ctttgatttt aagtattttt cctactttgt ttaatggaaa ttctgatgaa
     1021 agaatttata acatcttaat cacttttatt ttatttataa tcttgttttt tgcaaatttt
     1081 gcagaaagta ttgcagaagg aaggggtaaa gcccaagcag ctaccttaag acaaagcaaa
     1141 aaggattcta aagctagaca cataaaaagt gatggcagtg aagaaatgct taattctagc
     1201 gagttaaaaa taggtgatat agttttagtt aaagcaggtg aacttatacc taatgatgga
     1261 gaaattatag aaggtactgc aagtgttgat gaatcagcta ttacaggtga aagtgcacct
     1321 gttatgcgtg aagcgggcgg tgatttttct tctgttacag gtgggactac ggttttaact
     1381 gattttttaa agattaaaat tttagttgga gctggggaaa gttttttaga taaaatgatc
     1441 aatcttgtag aaggtgctgc gcgtcaaaaa actccaaatg aaattgctct taatactctt
     1501 ttaattgtac ttagtttgag ttttttgatg gtggttgtaa gtttatatcc ttttatgcaa
     1561 tttttaggcg tgagtttgcc tatttcatgg ttagtagcat tgcttgtatg tcttattcct
     1621 acaactatag ggggactttt atcagctata ggaatagcag gtatggatag ggtaacgcgt
     1681 tttaatgtga tcgcactttc aggcaaggct gttgaaagtt gtggtgatgt tgatactatg
     1741 attttggata aaacaggaac gattactttt ggaaaccgtt tggcaaatga attttatgaa
     1801 gtccaaggta taagtaaaga agaaatgatt aaagcttgtg ttttatcctc tttaaaagat
     1861 gaaactccag aaggtaaaag catagttgca ttggctcaaa aaatgggtta tgaattagaa
     1921 ggtaatgata ttaaagaatt tatcgaattt agcgctcaaa atagaatgag tggtgtggat
     1981 ttgcaagata atacaaaaat tcgcaaaggt gcttttgatg ctataagagc ttatataagc
     2041 gaaatgaatg gaaaaattcc tagcgattta gaaactaagg taatggaaat ttcaaatctt
     2101 ggcggcactc ctttggtagt gtgtaaaaat gaaaaaattt taggagtgat ttatctaaag
     2161 gatacagtaa aaccaggact taaagagcgc tttgatgagc ttagaaaaat gggcataaaa
     2221 actttaatgt gtaccggaga taatccttta acagcagcta ctataactaa agaagcaggg
     2281 cttgatggat ttatagcaga atgcaagcct gaagataaaa taaaagccat taaaaaagaa
     2341 caagcccaag gtaagatagt agccatgaca ggagatggaa ccaatgatgc tccagttctt
     2401 acacaagctg atgtaggtat agctatgaac tcaggaactc aagcagccaa agaagcagcc
     2461 aatatgatag atcttgattc taatcctact aaaattttag aagtagttga aataggaaaa
     2521 ggtttgctta ttactagagg tagtcttaca acttttagta tgacaaatga tattgctaag
     2581 tattttgcta ttttacctgc tatgtttagt gtggttttac ctcaaatgca aattttaaat
     2641 attatgcatt tggctacccc gaaaagcgct attttatcag cacttatttt taatgctatt
     2701 attatacctt tgctcatacc tattgctatg cgtggagtta aatttaagcc tatgaaaagc
     2761 gagcatttgc ttttaagaaa tttgagtatt tatggtttag gtggtatgat agcacctttt
     2821 atagggataa aaataattga tattcctaca gcttggatac ttagaatttt aggagtgtga
     2881 tatgcttaga aactttgctt agtttttttg tggtaatgct aatattgtgt actcttgttt
     2941 atccttttgc tttaaataca gttgcaaaat ttatttttcc ttatcaatca agtggaagtt
     3001 tagtagataa agaaggtcgt ccgactttgg atgtaagcaa agcggtaggt tcaaagcttt
     3061 tgggtcaaga ttttaataaa ccttattttc tacattcaag aacatctgtg tcaaattaca
     3121 atacaagcga tacaaatgaa agcagtgtaa gttcaggtgg atttaattat gctatgtcaa
     3181 atcctgcttt aaaagagcgt gtgcaaaaat atttgcaaaa atttttagat gaaaatccgc
     3241 aaattacaaa agaacaaatt cctttggatt tcaggatcag gtcttgatcc tcatatcagt
     3301 cttcaagcag ccctagtgca aattcctagg ataagtcaat cttcaaaaat caccaaagaa
     3361 gaactagaaa aaatcattca agaaaatact gagtctaaat tttagggatt tttggggaag
     3421 aaaaggttaa tgttttagct gttaatatag ctattgctaa agccatgaaa aaagaataaa
     3481 catgcaaaga caaagtcctg aacaaattct taaaaaactt gaggttaaag ctaaggaaga
     3541 agaaaaaaac aaacttgtaa aattaaaaat tttcttaggt tatgctgcag gttctggaaa
     3601 aacttatgct atgttaagtg aagccagaac tttaagggat aatggagttg atgttgtttt
     3661 aggctatata gagcctcacg atagacctga aacaatggct ttagcacaag gttttgaaag
     3721 tatagctaat cttgaaattc cttataaaaa tatagtatta aaagaatttg atttagacgc
     3781 tacccttaag agaaagcctg ctttggtttt agtagatgag cttgcacaca ctaatgctaa
     3841 aggcttgcgt aatgaaaagc gttttcaaga tatagaagaa cttctaaaag cagggattga
     3901 tgtttatact actttaaata tacaacattt agaaagctta aatgatttag tcgctaatat
     3961 cagtaagata gaagttaaag agcgtattcc tgatcgtatt tttgatgagg ctgatcaggt
     4021 tgaacttgtt gatattgaac ctaataagct tttaaaaaga atgcaagatg gtaaaattta
     4081 taaggaaaaa caagctaaac tagcacttga aaatttcttt cgccaagaaa gacttatagc
     4141 tttgcgtgag attgccttaa gaagacttgc ttcaagagtg aatttaagag caagtgaaca
     4201 aaggcttatt aatgatgatt tagcttatca tactggagag catattttag tttgtattaa
     4261 tgcttcaaat gcaaaggtta ttcgtgcagc tgcaagactt gctttagctt ttcatgctaa
     4321 attgagtgcg ctttatataa aaaatcccaa tattaaagaa gcaaaagcct tagaagaaaa
     4381 tatagaacta gctaaaagtt ttgatgctaa aatcattagc gtatatgatg atatagcaag
     4441 acaaattgca gagtattcaa gccttagcaa tgtctctaaa attgttttag gcaaaaataa
     4501 agataaaaaa agtttaaaga agagattttt gaagctgtcg ctaaaaaagc acccgatatt
     4561 gatttatatc ttgtcaatga aaatcaaatt tctactccta aaatacgaag taaaaaaaag
     4621 ttttgatttt ttaggttttt taaaaatcac aggagttttg cttttagcaa cttttatagc
     4681 ttttgtattt cataaattta atactcagcc aagtaatata gttatgattt ttattttagc
     4741 agtttttgct tcttctttta tttctgataa taaaattttc gccttttatt cttctttggt
     4801 aagtgttttg atttataatt ttttcttttt agaacctatt tttagtctta aagttcatga
     4861 tagtggaaat attattactt ttacaactat gtttatagtt ggatttttaa cagctgtttt
     4921 tactagaaga ttaaaattgc aatctaaaga actcactaaa agggcttata gaacagctat
     4981 tttacttgaa aatagtgaaa atttagcaag agtgaaaagc aaacaagagc tttgggaaca
     5041 acttggaaat caagctttaa aattattaaa tttacctatt attatttatc ctataaataa
     5101 aaacaatatt ttatcgaaac ctttgttgtt ttttaacgat gataagcaaa tgttaaaaaa
     5161 ttgttttagt gctgatgaga ttgctattgc tcaatgggtt gcaacaaata aagaaagagc
     5221 aggtgtttgt acaaataccc tacctaatgc taatgctatg tatttaccta tagaagatgg
     5281 gaaaaaacta aaggggttat aggtatagtt ttaaaagaaa aacgtccctt gcaagacttt
     5341 cagtatgaaa ttttaagtgc tttacttaat gaggcaggag ttagaacaag ggatatattt
     5401 ttattataaa tcccttaatt tattgatctc atctcttaaa gtcgctgctt tttcaaattc
     5461 gagcgcttta gcagcttcaa gcatttgttt acgaagctct tttacgattt tagctctttc
     5521 attagcaggc attttttcaa attttttacc tttgcgataa atttctccta agttttcttc
     5581 attttttaaa ctttcttcga tgtgtcgctt gactgaagtt ggcgtgatat tgtgtttttg
     5641 attgtaagct tcttgaagtt tgcggcgttc attggtggta tccatagctt cttgcatgga
     5701 ttttgtgatt tttttgcaaa aaagcaaaac cttaccattg acatttctag cagctcttcc
     5761 catggtttgg attaaacttg tagtgcttct taaaaaaccc tccttatctg cgtccataat
     5821 ggcaataagc gaaacctcag gcaaatcaag tccttctcta agtaagttaa tgccaattag
     5881 catatcaaaa gcaccgcttc ttaagcctct tatgatttca ttgcgttcta ttgcatcgat
     5941 atctgagtgc atgtatttga cttttatacc aagctctaaa taataccttg taagctcttc
     6001 agcgagtttt ttagtcagta cagttactaa aacccgttcg tttctttgta tgattttttt
     6061 agcttcatca aataaaattt caacttgatt atcgctatct ttaagttcta tcaaaggatc
     6121 aagtaatcct gttggacgca taatttgatg aaagatattt tccttgctaa gttcaagctc
     6181 aagcggggca ggggtggctg aaacaaaaag aaactgacaa tctttatgga taaattcatc
     6241 aaacattaaa ggacgattat caagagctga tggaagacga aaaccataat ctactaaagt
     6301 ttgctttcta cttctatctc ctgcaaacat accgcgaaat tgtggtaaag aaacatggct
     6361 ttcatcgact atgacaagaa attttctatt tttaatcgca aaataatcaa aaagcgtata
     6421 aggagtatcg ccttctttaa gtcctgttag atgccttgca tagttttcaa ctcctttaca
     6481 cattcctgtg cttgtaagca tttcaagatc aaattcaacg cgttgtttaa ggcgttgata
     6541 ttctacgagt ttattttcat gctcaaaata agcaaggcgt tcgttaagtt ctgtttttat
     6601 gtcttttatc gcttgtttta gccttgcttc gcccacgcta aactggcttg taggatagag
     6661 tataaagcgt tttaaatctt tacctttttt attttctaaa acattgtaat gatacatagc
     6721 atcaagctca tcgccaaaaa attcaagtct tactacttca tcttcataat aagctggata
     6781 aatatctata atatctcctt gaactctaaa atctgcacga tcaaaaaaat tatcatttct
     6841 tttataaccc atatctacaa gtttttttaa aagttctttt tgtgaaattt gcatacccag
     6901 ttcaaagatt aaaaccatgc ctatgtattc atttggatta ccaagtccat aatttgctga
     6961 aacactagct atgcaaacta catcttcata acttaaaaga gaagcagtag cactcagtct
     7021 taaacgctct aagtcttcat tagtggagct gtctttttct atgaaaacat cagtgcgtgg
     7081 aatataggct tcaggttgat aataatcata ataagatata aaatattcca catgattttt
     7141 agaaaaaaag cctttaaatt cgctataaag ttgtgcacaa aggcttttgt tgtgactcat
     7201 gataagagtg ggtatattaa gttctttaat gacatttgcc atggtaaagg tttttccact
     7261 tcctgtaacg cctagtaagg tttgatattt gttgcctttt tttatgcttt ttactatgcc
     7321 ttttatggct tcttgttgat cgggactggg tttaaattcg ctggtaagtt ctaacatttt
     7381 tctac
//
LOCUS       DAPIWQ010000082         7364 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.082, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000082 DAPIWQ010000000
VERSION     DAPIWQ010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7364
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.082"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1622)
                     /locus_tag="RJ267_001190"
     CDS             complement(<1..1622)
                     /locus_tag="RJ267_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HDV7389047.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNKKALNLAFGRDYEEVAEEISKLIKLHIPTSFKA
                     KMDFFMNLLSFKNIPPKRLKKNKALYDYEILNSLEELPILKTWEDDAGKFITMGQVYT
                     QNLDKTQNNLGMYRLQMSDKNELLMHWQIHKDGANFYHEYKNAGFKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPAKITPCENGIFIPYDSDVVIEGYVDLEEFKI
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYMLDRFNTKKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEELEILEDEKLLELFKTKVELLNLKQFYKESKSPIVCILLDKKEKIEQSFDKLLEFK
                     KHFRILVFLDAENKLENSYMLVWRVVNNIDAK"
     gene            complement(1619..2542)
                     /gene="hemC"
                     /locus_tag="RJ267_001191"
     CDS             complement(1619..2542)
                     /gene="hemC"
                     /locus_tag="RJ267_001191"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HDV7389048.1"
                     /translation="MKLIIATRKSQLALWQSEHVAQILKNTHQIEVLLEGFKTKGDVL
                     LDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSND
                     AMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLEIISLRGNVNSRIEKLKNNDF
                     DAIILAMAGIKRLNLDKQVNFVYEFSKDELIPAASQGALGIESINDEKILELLKCLND
                     ENALIETSIEREFIATLEGGCQVPIGINAELLGDEICVRAVLGLPDGSEILKDKRMIK
                     KNDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            complement(2539..2928)
                     /locus_tag="RJ267_001192"
     CDS             complement(2539..2928)
                     /locus_tag="RJ267_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HDV7389049.1"
                     /translation="MNYKLSLSPLFVLEIIASVLFIVFFGFGNFLFFILLSMIFGAVL
                     LGIFWKNMLEFQMGGLKDMLTQFSFVIAGFLLIFPGIITSVFGIFVFFFGIALKLITK
                     SKYQYTKQEYQNSNEEIIDVEIIEDRK"
     gene            complement(2925..4634)
                     /locus_tag="RJ267_001193"
     CDS             complement(2925..4634)
                     /locus_tag="RJ267_001193"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HDV7389050.1"
                     /translation="MMRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKE
                     NEFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA
                     FYTIKAVVKKAIYENESKLVVFFIRGSDDLQEVKAQNTCSALELVDASEEELEKAGLV
                     AGFIGFVGLKDIDFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVAIEANHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYRDLTNLGLEVLL
                     DDRNERFGVKMNDFELMGFPYALVIGKGLENNEIELIQREGLVKELIKTDELMEILKK
                     KVL"
     gene            complement(4618..5916)
                     /locus_tag="RJ267_001194"
     CDS             complement(4618..5916)
                     /locus_tag="RJ267_001194"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HDV7389051.1"
                     /translation="MYYCISFTHKNTDIALREKLSFSNEAKKSEFLKIISTHENIEEC
                     LVISTCNRVEIVAFVKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRAVHSAFKCAAKVRNETQISKNS
                     ISVASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDL
                     CERLGVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEELSYKRYFFDIAVPR
                     DIDINENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETSEFFRYLNDLALMP
                     IIKAIRLQAKEYADKQLEIALKKGYLKKSDKEEARKLIHQVFKAFLHTPTVNLKHLQG
                     KMQSDTVINAMRYVFDLQNNLEGLNQYKCEFDMENNDEIY"
     gene            complement(5916..6809)
                     /locus_tag="RJ267_001195"
     CDS             complement(5916..6809)
                     /locus_tag="RJ267_001195"
                     /EC_number="2.5.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexaprenyl-diphosphate synthase"
                     /protein_id="HDV7389052.1"
                     /translation="MQKIDELIKQFLQELGYEPILNMLSNVKSGKKLRSKLLLAIADE
                     SEIAFKICAAIELIHLASLLHDDIIDESELRRGARSVNAEFGTKNALMLGDILYSKAF
                     YELSKMDARFASIISDAVVKLAIGELMDVDLGEKFNINKEAYLKMIYNKTAVLIEASA
                     RCGAILAGLYEKDFAEYGKNLGLAFQMIDDILDIKSDEKILGKPAMNDFKEGKTTLPY
                     IYLYENLQEQDRIYLQTLFKKDLNENEKEWLKTKFEEQKALEKAILEAKTYAKKASKA
                     IEKYDNNKLNDIIKAMIDREF"
     gene            complement(6823..7359)
                     /locus_tag="RJ267_001196"
     CDS             complement(6823..7359)
                     /locus_tag="RJ267_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HDV7389053.1"
                     /translation="MFKISPCLICIFFIFSNVLASEPTFDYTYKFILKKDERASVQIK
                     EIGYEDKVQNFDFYWTLFDNTNIIVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYTNP
                     HIDRARLILEFSGYNKGLATFTVYIEDKESRLMVEFLDPRKKALQNPPQNNQVVPMIN
                     FNEPQVKPLTSKENNNSN"
BASE COUNT         2482 a         1417 c          810 g         2655 t
ORIGIN      
        1 cttttagcat ctatattatt taccacacgc caaacaagca tataagaatt ttcaagctta
       61 ttttcagcat ctaaaaatac taaaatccta aaatgttttt taaattctaa aagtttgtca
      121 aaactttgtt cgattttttc ttttttatca agcaaaatac aaactatagg acttttactt
      181 tctttataaa attgctttaa atttaaaagt tctaccttag ttttaaaaag ttctagtaat
      241 ttttcatctt ctaaaatttc aagctcttca acttgtattt cttcgcaagc atcaagtcct
      301 gctttacccc caaaacaaga attaggtgaa gcatgatcta attgatcaca aattccttct
      361 gaaattaaaa ttttctttgt attaaaacga tctaacatat aaggaattaa agcatcataa
      421 tctttcaaag aaggtgcatt tttatccaca aaaattgcat gcttaacaaa actcatttgc
      481 cctactcccc aaaatgcatg cataatttgt tgcgcatgag cgggatattt tgcatcgatt
      541 tttgctaaga taagattatg aaagacccca ttttcaggca tattataatc aattaaatca
      601 ggtactgaag tttgaagcaa gggtaaaaaa attctttcgg taccaagccc catgatctta
      661 tcttctaaag gaggctttcc tacaaccgtt gcttgataga tcgcatcttt tttagcataa
      721 attttttcta ctttcatcac aggaaaaagt tcagcaggag tataaaaacc cgtatgatct
      781 ccaaaaggac cttcgatttt aaactcttct aaatccacat aaccttcaat aaccacatca
      841 ctatcataag gtataaaaat accattttca caaggagtaa tttttgcagg agttttttta
      901 ataaaaccat aaagtaaaag ttcaaaaatt cccttaggta aaggtgcttg agaacaccaa
      961 atataaagcg gatctccacc tatggctata cttacaggca tttttttaaa accagcattt
     1021 ttgtattcgt gataaaaatt tgccccatct ttatgaattt gccaatgcat taaaagttca
     1081 tttttatcac tcatttgcaa acgatacatt ccaagattat tttgagtttt atctaaattt
     1141 tgtgtataaa cttgccccat ggtaataaat ttacccgcat catcttccca agtttttagt
     1201 atgggaagtt cttcaagtga gtttaaaatt tcataatcat acaaggcttt attttttttc
     1261 agtcttttag gaggaatatt tttaaaactt aacaaattca taaaaaaatc catttttgct
     1321 ttaaaactcg taggaatatg aagcttgatg agttttgaaa tttcttcagc cacctcttca
     1381 taatcacgtc caaaagctaa atttaaagcc tttttattgc aaaaagtatt catcaaaaca
     1441 ggaaatttat attgtttatt taatttttta tctataggat ttttaaataa taaagccttc
     1501 cctttttctc cttttttagc ttctatatag gctaaatgag cgatttcaag atctacatct
     1561 acaggttctt caattaccct taaaagatca ttttctttta aaatttgaat aaattctttc
     1621 atatcatact ctcagctttt tttaaaagtt ctttagcacc tttagcaata aactccttag
     1681 ccaaactctc tccaaaacct ttaaaatcat tctttttaat cattctctta tcttttaaaa
     1741 tttcacttcc atcgggtagt ccaagtaccg cacgcacaca aatttcatct cctaagagtt
     1801 ctgcgttaat acctatagga acttgacaac ctccttctaa agtagcaata aattctcttt
     1861 caatgcttgt ttcaatcaaa gcattttcat catttaaaca ttttaaaagt tctaaaattt
     1921 tttcatcatt tatgctttct atacctaaag ctccttgaga agccgcagga ataagctcat
     1981 ctttgctaaa ttcataaaca aaattcactt gcttatctaa gtttaagcgt ttaattcccg
     2041 ccattgccaa aataatcgca tcaaaatcat tattttttaa tttctctata cgagaattga
     2101 cattaccacg caaagaaata atctctaaat caggtcttaa taataaaagc tgcatcttgc
     2161 gtctaagact agtagtgcct atttttgcac cttttggtaa agaaagaaaa tctttataat
     2221 tttgacttag catagcatca ttgctttgct ctcttttgct taccgctgcc aaaactaaac
     2281 cttgaggaaa aaaactaggc acatctttta aactatgcac tgctaaatgt gcttcttttc
     2341 ttaacatact ttcttcaagt tcttttgtaa aaagtccttt accaccaatt tttgccaaag
     2401 gagaatcaag caaaacatcg ccttttgttt taaaaccttc taaaagcact tcaatttgat
     2461 gtgtattttt taaaatttgg gctacatgtt cactttgcca aagagctaat tgactttttc
     2521 ttgttgcaat aataagcttc attttctatc ctctataatt tcaacatcaa taatttcttc
     2581 attagaattt tgatactctt gcttggtgta ttgatatttt gatttagtta ttaatttcaa
     2641 agcaatacca aagaaaaata caaaaattcc aaaaacactt gtaataatcc ctggaaaaat
     2701 aagcaaaaac cctgcgataa caaaagaaaa ttgtgttaac atatccttta agccacccat
     2761 ttgaaattca agcatatttt tccaaaaaat tcccaataaa accgcaccaa aaatcatact
     2821 caaaagtatg aaaaataaaa aattaccaaa accaaaaaaa actataaaaa gtacacttgc
     2881 aataatttca agtacaaata aagggcttaa acttaattta taattcataa cactttcttt
     2941 ttaagaattt ccataagttc atcagttttt ataagttctt ttaccaaacc ttctctttgg
     3001 ataagctcta tttcattatt ttctaatcct ttaccaataa ctaacgcata aggaaagccc
     3061 ataagttcaa aatcattcat tttaacccca aaacgctcat ttctatcatc aagcaatact
     3121 tctaatccaa gattagttaa atccctataa agcttattag caaattctaa agccttttca
     3181 tctttgagat ttgaaacaat aatttcaagc acaaaaggag ctaaagtttt attccaaata
     3241 catccttttt catcatgatt tgcttcaata gctacagcca acaagcgtga aacacctatg
     3301 ccgtaacatc ccatataaaa aggctggctt ttgccatttt catctaagaa atttgcattc
     3361 atcgctttgg aatatttttg tcctagctta aaaatatgcc ctacttctat acctttactt
     3421 tgttttaatt ttgctccaca tttaacacag caatcccctt ctttaacttc aatcaaatct
     3481 ttaaaacgat ctttatttaa atttacaaca tcaataccga ttaaatgata atctttttca
     3541 ttcgcaccca taatcatttg cttttcgttt tcaagctcaa aatctatata aaaatctata
     3601 tcttttaatc ccacaaaacc tataaaacca gctactaagc cagctttttc caattcttct
     3661 tcgctcgcat cgactagttc aagggcactg caagtatttt gagccttaac ctcttgcaaa
     3721 tcatcacttc ctcttataaa aaacacaact aatttgcttt cattttcata aatagctttt
     3781 tttaccactg ctttaatcgt ataaaaagca ttgattttaa aaaattgtgc taaagaatct
     3841 atagttttaa tatttggagt gtgaaattta cttgcataat ttgcttcagg acgctcatct
     3901 tgacaagttt ttttagctct ttttgcagct tcaacattag ccgcataatc acaattttca
     3961 caaattaaaa tatcatcttc cccatttttt gctaaaacca taaattcctt agagccactt
     4021 ccaccaatag ccccactatc agcttcaact gctctaaaat caagccccat tctttgtaaa
     4081 atttgagaat aagttttata cataagctca aactcacgcc ctaaatcttc ttcattagca
     4141 tgaaaactat atccatcttt cattagaaat tcacgacatc ttaaaagccc aaatctaggc
     4201 cttgcttcat cacgaaattt aagtccaatt tgatataaat gcaaaggaag ttgtttatag
     4261 cttgtgattt tgttttttac caaagaaagc atagcttctt catgtgttgg acctaaaaca
     4321 aattcatttt cttttctgtc tttaaaacgc aaaagttctt ttccaaaaac attgtaacgc
     4381 ccactttctt gccacaaact tgcaggagtg ataaaactaa gatttacttc ttgtgctcca
     4441 gccttatcca tttcttcttt aactatattt ttaatcttgt ctaaaactct ttttcccaaa
     4501 ggcaagaaat tataaagtcc gctaccaatt tgttctacaa aacccgcacg cgttaaaaaa
     4561 atatgactag gtaaactcgc atcttttggc gcttctttta aacttggtgc ataaaattta
     4621 gtaaatctca tcattattct ccatatcaaa ttcacattta tattgattta aaccttcaag
     4681 attattttgc aaatcaaaaa cataacgcat agcattaatc actgtatcgc tttgcatttt
     4741 accttgtaaa tgtttcaaat ttacagtagg cgtgtgtaaa aaagccttaa aaacttgatg
     4801 aatcaacttt ctagcctctt ctttatcaga ttttttcaaa tatccttttt ttaacgcaat
     4861 ttcaagttgt ttatctgcat attctttagc ttgcaagcgt atagctttga taataggcat
     4921 caaagccaaa tcgtttaaat acctaaaaaa ttcacttgtt tcacgaccta ttatcccata
     4981 agccatacga gcttcttgtt ctcttagtgc taaatttttt tgaaccacaa tttcaagatc
     5041 atctacagca aaaacagata tattttcatt ttcattgata tcaatatccc ttggaactgc
     5101 aatatcaaaa aaataccttt tataagaaag ttcttctatt aaagaatttg taataatagc
     5161 atttggtgca ttggtagctg agaaaaaaaa ctcgtattga tttaaatatt tttttaaatt
     5221 ttctaaacta tcatattcgc ttaaaacacc aagtctctca cacaaatctt tagctttttg
     5281 taaatcacga tttaaaataa tcaccttagc acccgcagca attaaatgtt ttgccgcgag
     5341 ttctcccatc tctccagctc caataacaac agcttttttt tgcgttaaat ctgcaagttc
     5401 ttttgctttt gccacggcaa cgctagctac agaaatagaa tttttagaaa tttgagtttc
     5461 attgcgtacc ttagcagcac atttaaaagc actatgtact gctcttgaaa ggtgtactcc
     5521 acaaaaatta ttttttacag caaaagcaaa ggcatctttt aattgtcctg ctatctgagt
     5581 ttctccaacc accaaactat ccaaagaact tgctacagaa aaaagatggt ggattgctcc
     5641 actatcttca aaaatatcag ctttttcaag taaaatatct ttatcaacat cacaaagtaa
     5701 agccaaagat ttaacaataa actccgcaca ggccattttt acaaaagcaa caatttcaac
     5761 acgattgcaa gtacttataa ccaaacattc ttcaatattt tcatgagtgc taatgatttt
     5821 taaaaactca ctttttttag cttcattgga aaagcttaac ttttccctta aggcaatatc
     5881 tgtattttta tgagtaaaag atatacaata atacattaaa attccctatc tatcatagct
     5941 ttaataatat cattaagctt gttattatca tatttttcaa tcgctttact agcctttttt
     6001 gcataagttt tagcttctaa aatagctttt tctaaagctt tttgttcttc aaatttagtt
     6061 tttagccact ctttttcatt ttcatttaaa tcttttttaa ataaagtctg caaatatatc
     6121 ctatcttgtt cttgtaaatt ttcataaaga taaatataag gtaaggtagt cttaccctct
     6181 ttaaaatcat tcatagcagg ttttccaaga attttttcat cactcttaat atctaaaata
     6241 tcatcaatca tctgaaaagc gagtcctaaa ttttttccat attctgcaaa atctttttca
     6301 tataatccag ccaaaatagc tccgcatctc gcacttgctt cgatcaaaac agctgtttta
     6361 ttatagatca ttttcaaata agcttcttta ttgatattaa atttctctcc caaatcaaca
     6421 tccataagtt cgcctatagc aagctttaca acagcgtctg aaataatact tgcaaatcta
     6481 gcatccattt tacttaattc ataaaaggct tttgaataca aaatatcgcc caacataaga
     6541 gcattttttg taccaaattc agcattaaca gatcttgccc cacgccttaa ttcactctca
     6601 tcgataatat catcatgtaa taaactagca agatgtatca attctatagc tgcacaaatt
     6661 ttaaaagcaa tctcactctc atctgcgata gctaataata atttagagcg taatttcttt
     6721 cctgatttta catttgaaag catatttaaa ataggttcat agccaagttc ttgtaaaaac
     6781 tgttttatta attcatctat tttttgcact atcttttcct tgttaattgc tattattatt
     6841 ttctttgctt gttaatggtt ttacctgagg ttcgttaaaa ttaatcatag gaacaacctg
     6901 attattttgc ggtggatttt gtaaagcttt ttttctcgga tctaaaaatt ctaccattaa
     6961 gcgagattcc ttatcttcta tataaaccgt aaaagttgcc aaacctttat tataaccact
     7021 aaattctaaa ataagtcttg ctctatcaat gtgtggattg gtataatcag gtattaaagt
     7081 ttgagttacc caatctaaat ttcttcttaa actcatcaca aattgacgcg gatatttgcg
     7141 aaatttcgaa tgtacgatga tattagtatt atcaaacaaa gtccaataaa aatcaaaatt
     7201 ttgcacctta tcttcatagc ctatttcttt aatctgcaca ctagctctct catctttttt
     7261 aagtataaat ttataagtat aatcaaaagt tggttcagat gctaaaacat tactaaaaat
     7321 aaaaaaaata caaattaaac aagggcttat tttaaacaat ttta
//
LOCUS       DAPIWQ010000083         7351 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.083, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000083 DAPIWQ010000000
VERSION     DAPIWQ010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7351)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7351)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7351
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.083"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            57..1547
                     /locus_tag="RJ267_001197"
     CDS             57..1547
                     /locus_tag="RJ267_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDV7389054.1"
                     /translation="MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSV
                     ATVGNEKIGFSEFDTRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLN
                     FAKDLGIGVNENQILQKLANTREFQDPTGDFNKTIYYELLNANNLAPKDYETQLANEV
                     ITDKLNQIFNIPSKDEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHK
                     EDYKTKKIYEISTYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEV
                     AKDYALMQLKNVANAKFLDLKNGKDNFQKDQNISESDVYYPIDLLNKAKNGDVLRPAP
                     YNNGYIIVKLNKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSLVNFKGDDIG
                     FVSRDSSRESVKVSDKILNDSEFAYFLMNVFNTDQNSSYVVINDNKAILYKINKQKLD
                     MNSDKFEQYKTMLEQNLQNLKANELKQELVDELKKIYPIKIYYKGN"
     gene            1544..2932
                     /gene="ftsA"
                     /locus_tag="RJ267_001198"
     CDS             1544..2932
                     /gene="ftsA"
                     /locus_tag="RJ267_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HDV7389055.1"
                     /translation="MILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGA
                     ITNIELASKSIEEAVRSAEMMSGVHYDRVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNTLIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANAIGGGVVLTGGMTKLAGIDELA
                     PAIFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENFNRQIKQDIVLQKDTESEIKSDFFDENLQENDTIAIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            2948..4060
                     /gene="ftsZ"
                     /locus_tag="RJ267_001199"
     CDS             2948..4060
                     /gene="ftsZ"
                     /locus_tag="RJ267_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HDV7389056.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISISLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAESGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFRLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     FEISAAANSIQEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDKDTVAKKSTEEAQ
                     ASKKNPYLSLKKVSGGYDEEIMAQIETPTFLRRQMD"
     gene            4216..5028
                     /locus_tag="RJ267_001200"
     CDS             4216..5028
                     /locus_tag="RJ267_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HDV7389057.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMT
                     REDAFYLVQTKDGEVRLTKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIRIPNG
                     AVQISVDKNGSIEVDGAQNARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAI
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLAAVK"
     gene            5057..5848
                     /gene="flgG"
                     /locus_tag="RJ267_001201"
     CDS             5057..5848
                     /gene="flgG"
                     /locus_tag="RJ267_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HDV7389058.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNG
                     FFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(5915..7345)
                     /gene="glnA"
                     /locus_tag="RJ267_001202"
     CDS             complement(5915..7345)
                     /gene="glnA"
                     /locus_tag="RJ267_001202"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HDV7389059.1"
                     /translation="MGKFVNNIDDFFKFCKQNEVLFVDFRFTDMIGTWHHITYNLHAI
                     NEETFQTGIPFDGSSIHGWQPIEKSDMILKPDAQSAFLDPFTADPTIIVFCDVYDIYK
                     GQMYEKCPRSIAKKAIEHLKNSGIADTAYFGPENEFFVFDSVKIVDTTHCSKYEVDTE
                     EGEWNDDREFTDSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHH
                     EVAQGQAEIGVNFGTLVEAADNVQIYKYVVKMVAHLNGKTATFMPKPLYGDNGNGMHV
                     HMSLWKNGVNLFYDKDGYSGLSQTAINYIGGILKNARSVAAFTNPSSNSYKRIVPGFE
                     APCILTYSCQNRSASCRVPYGIGKNSARIEIRFPDSTANPYLAFVSLLMAGLDGIKNK
                     TIPVGPMDENLFDLTLDEIREKGIEQLPHTLRGSLEALIRHNSYLKPVMSDIFIDDYQ
                     HLKFETQVWPVEARPTAYEFKTCYSC"
BASE COUNT         2618 a         1005 c         1366 g         2362 t
ORIGIN      
        1 tccacttaaa cacttctacg atacaatatc tggtttaaat ttaatcaagg aatgatatgc
       61 ttacttggat gcaacatcac aaaaaatatc ttgttgttac tatatgggtt agtactatag
      121 cttttgttgg cgctggcttt ttaggttggg gtgcttatga ttttaatctc aatagaagtt
      181 cgagtgttgc aactgtagga aatgaaaaga taggttttag cgaatttgat actagatata
      241 gacaaatttt aagttattat aatcaaatta gcaatggtgc tttaactcca gaaaatgctg
      301 agcaactagg cattaaaaat atagctttaa gctctcttgt tgaagataag cttttgttaa
      361 attttgccaa agatttgggt attggtgtga acgagaatca aattttacaa aaacttgcaa
      421 atactagaga atttcaagat cctacagggg attttaacaa aacaatttat tatgaacttt
      481 taaatgccaa taatttagct ccaaaagatt atgaaacaca acttgcaaat gaagtaatta
      541 ccgataaact taatcaaatt tttaatattc ctagcaaaga tgaggaatta aaaatgttag
      601 cttctagtta tttcatgcaa gatgctttaa gtattgcaaa aattgattat gacaaaaaaa
      661 atattaagat taacgaagag gatttaaaaa agctttggaa tgaacataaa gaagattata
      721 aaactaaaaa aatatatgaa atttcaactt attttttgcc agttagcaat gagaaaattg
      781 acgacaaaga attagaaaaa ttttataatc aagatgaaaa taaactaaaa tataaagatt
      841 ttgcaggtaa agtgatggat tttcagtctg ctaaaaatga agttgctaaa gattacgcct
      901 taatgcaact aaagaatgtg gctaatgcta aatttttaga tttaaaaaat gggaaagata
      961 attttcaaaa agatcaaaat attagtgaat ctgatgttta ttatccaatt gatcttttga
     1021 ataaagctaa aaatggagat gttttacggc cagcacctta taataacgga tatatcatag
     1081 ttaaactaaa taaagtagat cctataagaa ataaaacttt tgaagaagct agagaagaag
     1141 ttttacctat gtatttaagc gaacaagcta gaaaaaattt agaagaaaaa gctaaaaata
     1201 gtttagtaaa ttttaaaggc gatgatatag gctttgtaag tcgagatagt tctcgcgaga
     1261 gtgtaaaggt tagcgataaa atattaaacg attctgaatt tgcttatttt ttaatgaatg
     1321 tatttaatac tgatcaaaat agttcttatg tggtcattaa tgacaataaa gcaatattat
     1381 ataaaataaa taaacaaaaa ttagatatga actccgataa atttgaacaa tacaaaacta
     1441 tgcttgaaca aaatttgcaa aatttaaaag caaatgagct taagcaagaa cttgttgatg
     1501 aacttaaaaa gatatatccg ataaaaattt attataaagg gaattgattt tgaatatatt
     1561 aggaattgac ttaggctcaa cccagacttg tgccattatt gctcaaaaag atgaagatgg
     1621 attaaaaatt attggttttt ccaagtcgaa aaccaacggg gttaaaaaag gtgccattac
     1681 caatatagag cttgcttcta aatctattga agaggctgtt agaagtgctg agatgatgag
     1741 cggagttcat tatgataggg ttgtggtgtc tatatcaggt gcttatacta aaagcgttga
     1801 tagcataggt gttgttaata ttccaaatca tgaaataggc attaaagaaa ttcatcgtgc
     1861 tgtaagtaca gctaagcata ctgccaatct accaagtggt tatgaaatta tccatgtttt
     1921 gccttataat tttaaggtta atgatcttga acatgttgat gatcctttgg gaatgagtgg
     1981 caatcgttta gaagtttcaa cccatatagt gatttcacaa gaatctcata ttaaaaatct
     2041 taagaaagca gttgaattag ctgatttaag agtggataat atagttcttt caggatatgc
     2101 ttcagctata gcttgtttag atgatagcga aaaggaatta ggtgctgttt tgattgatat
     2161 gggtggagcg atttgtgata tggttgttca tactggaaat tcaattagat ataatgattg
     2221 tttgcaaatt ggctcgatta atatcactca agatttatca atggcattgc atacaccttt
     2281 aaaagaagca gaaaaaatca agcttaatta tgcagctctt tcacaacagc ctaataccct
     2341 tatacaaatt ccttcaatgg gtgatgaaag aaaggttaat gaagtttctt tggatattat
     2401 ttcaaacgta atttatgcaa gagcggaaga aactttgatg attttggcaa aaatcttaag
     2461 tgataatcgt tatgccaatg ctataggtgg cggagttgtt ttaacaggtg gaatgactaa
     2521 gttagcaggt attgatgagc tagctcctgc aatatttgat aatcgctcag ttagactggc
     2581 tactgcaaga aaagatttga ttactggttt tagtgaaatt tttaatgatc ctgaaaatac
     2641 ttgtgctata ggactttgtt tatatggagc gggatatttt acgccttatg aacttgattc
     2701 taatgagaaa ttaagatata aaggggaaat tgaaaatttt aatcgtcaaa ttaaacaaga
     2761 tattgttttg caaaaagata cagaaagtga aataaaatct gatttttttg atgaaaattt
     2821 gcaagaaaat gatacaattg caatacaaga acaattagat tttaaagagc caaaagaaaa
     2881 aaaacctagt gttttttcaa atatctggca taaaattatg aatcaatttt aacaaggaga
     2941 aatttttatg agtgaatttt tagtagaaga aatgcaacat aataaaggtg caaaaattaa
     3001 ggttataggc tgcggtggcg gtggcggtaa tatgattaac catatggtta aaatgggatt
     3061 aaatgatctt gatttaattg cagcgaatac tgatgcacaa gctatttcaa tttcattagc
     3121 aaaaactaaa attcaacttg gcgagaaaaa aactaaaggt ttgggcgctg gtatgcttcc
     3181 tgaagtaggt gcagaaagtg ctagagaaag ttttgaagaa ataaaagcaa gtcttagtca
     3241 aagtgatatt gtatttattg cttcaggttt tggtggaggt actggaacgg gtgccactcc
     3301 agttattgca caagcagcta aagagatcgg agctttaact gtttctgttg taactatgcc
     3361 ttttgcattc gaaggaaaac aaagaaaaaa acttgctgaa agcggtctcc ttgagcttaa
     3421 aaaagaaagt gattctattc ttgtaattca aaatgaaaaa ttattgagca ttattgataa
     3481 aaaagcaggt attaaagatg cttttaggtt ggttgatgat attttagctc gtgctgtaaa
     3541 aggtatggtg tctatcttac ttgataatgg agatattaat gttgactttg cggatgtaag
     3601 aaccatcatg agtcatcgcg gactcgcgct tatgggtgtt ggtagtgcta gcggtgaaaa
     3661 tgctatagaa gaggctcttt caaacgctat agaatctcct ttgcttgatg gaatggatat
     3721 taaaggtgcc aagggagtta ttttacattt taaaacaagt tctaattgct ctttgtttga
     3781 aatttcggca gcagcaaata gtatacaaga aattgttgat gaaaatgcta agattatttt
     3841 tggttctact acagatgata gcatggaaga tagagttgaa gtaactatta ttgcgacagg
     3901 gtttgaagat aaagatacag tagctaaaaa atctaccgaa gaagctcaag cttctaagaa
     3961 aaatccttat ttaagtctta aaaaggtaag cggtggttac gatgaagaga taatggcgca
     4021 aattgaaaca ccaactttct tgcgtcgtca aatggattaa aattgatttt taaagcaaga
     4081 ttgagtcaaa tcttgctttt tatagtttaa aattctctcc taataatctt tcaaatattt
     4141 atttttcttt gtttttaaaa gttggaacac tctttgcttt tatagttata aaatcttaaa
     4201 tttataggtg aaaatatgca aaatggatat tatcaagcaa ctggcggaat ggtaactcag
     4261 tttaataaac ttgatgtgat tactaataat cttgccaata ttaatacaag cggatacaaa
     4321 agagatgatg tggttattgc agattttaaa aggattttta aagaaactca ggatgagttg
     4381 cctatagaaa atcacacaag agatgcatct cgttttgtaa atactacaat agatggaatc
     4441 ccacaagttt ctcaagaata tacggatttt agcctaggtt ctttaaaggc cacaaacaat
     4501 cctttggatt tggcaatgac tagagaagat gctttttatt tggttcagac caaagatgga
     4561 gaagtaagat taaccaaaga tggaaatttt caacttgatg atgagggtta tttggtaaat
     4621 aagcaaggat acaaggtatt aagtagtgat tattttaata atcctcagaa tgctggcata
     4681 cgcattccta atggtgctgt tcaaattagc gttgataaaa acggaagcat tgaagttgat
     4741 ggagctcaaa atgcaagatt atttgtagca caagtagatg atataagagc tttgcaaaaa
     4801 gatggggata atgtctataa aatagatgat ctaacccgta ttagagattt gaaaaactcc
     4861 aatgctattc gccaaggttt ttctcaggga tcaaatgtta atccagttac tgaaatggta
     4921 ggactgattg aagcaaacag aatggtagaa atgtatcaaa aagttatgac agctcatatg
     4981 gatgacttaa atcaagaagc tatcaataag cttgcagctg ttaaataatt taaaataaaa
     5041 taaaaaagga ttaaaaatga tgagatcact tcatactgct gctacaggaa tggtagcgca
     5101 gcaaacacaa attgatgtta cttcaaataa catcgccaat gttaatacag caggttttaa
     5161 gaaaagtcgc gcagaatttg ctgatcttat gtatcaagtt atgaagtatg caggaacttc
     5221 aacttcagct actactcttt ctccttcggg tatagaagtg ggtgtgggtg tgcgtccaac
     5281 agcggtaact aaagttttta ctgaaggaaa tttaaaatca acaagtactg atggtcttga
     5341 tatggctatt gcaggtaatg ggttttttca aatacaactt cctgatggca ctataggata
     5401 tactagaaat gggcaattta caaaagataa tgaaggtaat attgtaaatt cagatggtta
     5461 tagactttta cctgaaatga caatacctga aggcgcaaca gcaattaatg ttgctacaga
     5521 tggaaccgtt tctgtaatgc taccagggga gcaacaagaa actcaaattg gccaagtgga
     5581 gctagttcag tttataaatc cagcgggtct tcattctatg ggtgataatc tttatcttga
     5641 aacaggagca agtggtgcac ctgttgcggg tatagcagga caagatgggc ttggaacaat
     5701 aagacatgga tttatagaac ttagtaatgt tcagcttgtt gaagaaatga cagatcttat
     5761 cacaggacaa agagcttatg aagcgggttc taaggccatt acaacaagtg atgatatgct
     5821 aggaattgta aatcagctta agcgatagtt gatataaaat aaataatttt taattctttt
     5881 ttgtttaatg gcgtgttaaa cgccattaaa ttttttagca agagtagcaa gttttaaatt
     5941 cataagcagt tggacgagct tctactggcc aaacttgtgt ttcaaatttt aaatgctgat
     6001 agtcatcgat aaaaatatcg ctcattacag gttttaaata agaattatgt cggattaaag
     6061 cttccaaact tcctcttaga gtatgtggta attgctctat ccctttttca cgtatttcat
     6121 ccaaagtaag atcaaataaa ttttcatcca taggacccac aggaatggtt ttatttttga
     6181 ttccatcaag acctgccatt aaaagactaa caaaagctaa ataaggatta gcagtgctat
     6241 cagggaagcg aatttctata cgagctgaat ttttacctat gccataagga acgcgacaac
     6301 ttgctgatct gttttggcaa gaataagtta aaatacaagg agcttcaaag ccaggaacta
     6361 ttcttttgta agagttggaa cttggatttg taaaagctgc aacacttcta gcatttttta
     6421 aaattccacc tatataattt atagcagttt gactaagtcc actgtatcca tctttatcgt
     6481 aaaataaatt tactccattt ttccataagc tcatatgaac atgcatacca ttgccattat
     6541 ctccgtataa aggttttggc ataaaagtgg cagttttgcc atttaaatga gctaccattt
     6601 ttacaacata tttataaatt tgaacattgt cagctgcttc tacaagcgtg ccaaaattta
     6661 ctcctatttc agcttgtcct tgtgcaactt catgatgatg aacaaaagtt ttaagaccta
     6721 ctttttcaag ggtttgaacc atttcagaac gaatatctac taaagaatca attggctgaa
     6781 ctggaaaata tccacctttg tttcttggcc tgtgtccagt attgtagcta tcggtaaatt
     6841 ctctatcatc attccactct ccttcttcgg tatcaacttc atacttagaa caatgagtag
     6901 tatcaactat ttttacacta tcaaaaacaa agaattcatt ttctggtcca aagtaagcag
     6961 tatcagctat gccactattt ttaaggtgtt ctattgcttt ttttgctatg cttcttggac
     7021 atttttcata catttgtcct ttgtaaatat catacacatc acaaaatact atgatagtag
     7081 gatcagccgt aaaaggatct aaaaaagcac tttgagcatc aggttttaaa atcatatctg
     7141 atttttctat aggttgccat ccatgaattg agcttccatc aaatggaatg ccagtttgaa
     7201 atgtttcttc attgattgca tgaagattat aggtaatatg atgccaagtt cctatcatat
     7261 ctgtaaaacg aaaatcaaca aaaagcactt cattttgttt gcaaaatttg aaaaaatcat
     7321 ctatattatt aacaaatttt cccatatttt t
//
LOCUS       DAPIWQ010000084         7300 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.084, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000084 DAPIWQ010000000
VERSION     DAPIWQ010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7300)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7300)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7300
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.084"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(160..576)
                     /locus_tag="RJ267_001203"
     CDS             complement(160..576)
                     /locus_tag="RJ267_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389060.1"
                     /translation="MKKLGLVLAVLVALNVSAFADLIVINKKDLVPVSASEMQNKYFQ
                     ESIKSTLTEPLFKKATFYEADIVAKVDPRTYNSTQAIIQKEYSDKSNYVYYKQVLILT
                     SDGKRARLYTLSCEIASFDKKGYLCGGTADHNYSIK"
     gene            complement(751..835)
                     /locus_tag="RJ267_001204"
     tRNA            complement(751..835)
                     /locus_tag="RJ267_001204"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(799..801),aa:Leu,seq:tag)
     gene            complement(840..916)
                     /locus_tag="RJ267_001205"
     tRNA            complement(840..916)
                     /locus_tag="RJ267_001205"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(880..882),aa:Arg,seq:tct)
     gene            complement(931..1007)
                     /locus_tag="RJ267_001206"
     tRNA            complement(931..1007)
                     /locus_tag="RJ267_001206"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(971..973),aa:Arg,seq:tcg)
     gene            complement(1011..1087)
                     /locus_tag="RJ267_001207"
     tRNA            complement(1011..1087)
                     /locus_tag="RJ267_001207"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1051..1053),aa:His,seq:gtg)
     gene            complement(1112..1189)
                     /locus_tag="RJ267_001208"
     tRNA            complement(1112..1189)
                     /locus_tag="RJ267_001208"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1152..1154),aa:Pro,seq:tgg)
     gene            complement(1232..2080)
                     /locus_tag="RJ267_001209"
     CDS             complement(1232..2080)
                     /locus_tag="RJ267_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HDV7389061.1"
                     /translation="MRFVFLICCACLVFANEILLLSKFDKQDFNSKDFNAYLMSEKLD
                     GVRGIWDGKYLKTRQNYKIKTPDFFTKNFPPFAIDGELWIARNKFDEISALIRSGDSN
                     LTLWKEVTYNIFDVPNACEEFQISTCTLKNRLAVLEEYLQKYPSAYIKIISQIPVENQ
                     NNLNQFYESIIKNQGEGIVIRKNLSPYEKGRSKNATKLKPYDDAECELVGFRKGKGKF
                     ENQVGALLCKMPNGQIIKIGSGLKDEDRKNPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     IRDENP"
     gene            complement(2080..2742)
                     /gene="cgpA"
                     /locus_tag="RJ267_001210"
     CDS             complement(2080..2742)
                     /gene="cgpA"
                     /locus_tag="RJ267_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein CgpA"
                     /protein_id="HDV7389062.1"
                     /translation="MKTRILAIFFIFTSLLYADENPFKTDQNITLVAPPEFQKEEVKF
                     NSSARILKSITFNYINLDGSEDKIDLDVNKSIDWHDTYTISRFKSPDPSKVLDVSVTI
                     PEKNSSKQESNSTANVEIPLQVAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKI
                     VIDFRSKMISPTKNIRLSNSIFKRIDFGSHKGYYRLVIYLDGTYNYNIQKDATGYMIN
                     LL"
     gene            complement(2732..2935)
                     /locus_tag="RJ267_001211"
     CDS             complement(2732..2935)
                     /locus_tag="RJ267_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389063.1"
                     /translation="MIFWAFLVVIGAIYFGNMFFGQYSLDTLLSLENTKEELNKKIIL
                     LKEQNAKAQKDYFELKGLYPNEN"
     gene            complement(3001..4245)
                     /gene="eno"
                     /locus_tag="RJ267_001212"
     CDS             complement(3001..4245)
                     /gene="eno"
                     /locus_tag="RJ267_001212"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HDV7389064.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIINGGAHANNNVD
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKDGKYHMEGKAFSSEALIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIEFESDEYLGEKL"
     gene            complement(4245..5276)
                     /gene="recA"
                     /locus_tag="RJ267_001213"
     CDS             complement(4245..5276)
                     /gene="recA"
                     /locus_tag="RJ267_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HDV7389065.1"
                     /translation="MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMIS
                     GSEDDEGEE"
     gene            5382..6242
                     /locus_tag="RJ267_001214"
     CDS             5382..6242
                     /locus_tag="RJ267_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HDV7389066.1"
                     /translation="MKKITIAHSPDADDIFMYMAIKFGWIGNDFAYENTALDIQTLNE
                     FALKNEFDATAISFGLYPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALS
                     GANTTNALIFRMKYPEARIIYKNFLDIENAVLSGEVDAGVLIHESILNFDQSLYVEAE
                     LWDIWLEFAKENLPLPLGGMALRRSLPLSDAIKIERDLTNAVKIADANRKILAPMLME
                     RKLIRVDEEKLDTYLNLYANKNSISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDFLI
                     PSEYEEARNS"
     gene            6254..6523
                     /gene="fliQ"
                     /locus_tag="RJ267_001215"
     CDS             6254..6523
                     /gene="fliQ"
                     /locus_tag="RJ267_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HDV7389067.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQI
                     NEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            6520..7296
                     /locus_tag="RJ267_001216"
     CDS             6520..7296
                     /locus_tag="RJ267_001216"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HDV7389068.1"
                     /translation="MIIDFKKYSSVRIGNEFEVLVLDQICDFDGFLIGGANNLLVSPK
                     PKNIGILGDGFNFIQILDRNKDFIHLRIGCKTKSSKMYRFAKENNLKGFEYLSKIPGT
                     LGGLLKMNAGLKGECISQNLIKIATSQGEILRANINFDYRFCPLNTHFFWAEFKLNFG
                     FDTLKDEALKNARSNQPSGASFGSIFKNPKNDFAGRLIEAVGLKGFSKGDAMLSDKHA
                     NFLINKKNASFEDAFFLIELARKKVFEEFGTNLENEVIII"
BASE COUNT         2341 a         1288 c         1113 g         2558 t
ORIGIN      
        1 agatataaaa gataaaacga tttaaaaaac tagaaatttt taacttaaaa agcttaaaat
       61 ttagatatat tttatactta ctatgttttt tcatagtatg ttctaatggt ggatttccgc
      121 caagagtgaa aactcaaggc ggatttttat ttgcaatatt tacttaatag aataattatg
      181 atcagctgtg cctccacata aatacccctt cttatcaaaa cttgcaattt cgcaagaaag
      241 agtatataat ctagctcttt taccatcact agttaatata agaacttgtt tataataaac
      301 ataattgctt ttatctgaat attctttttg tattatagct tgagttgaat tataagttct
      361 tggatcaact tttgcaacaa tatctgcttc ataaaaagtt gcctttttaa aaagtggctc
      421 agttaaagtt gattttatac tctcttggaa atatttgttt tgcatttcgc ttgctgaaac
      481 tggaactaaa tcttttttat tgataactat caaatctgca aatgctgaca catttaaagc
      541 aactaaaact gctaaaacta aacctaattt tttcatttta tctccttgaa ttgaattttg
      601 tatatttgaa ttatttttca aatcttttgc aagataattt ttaaatttat ctaaattaaa
      661 tttgcatttt atctaacaat cataagaaat tttaaaatga aataaaaatt tatgagaaat
      721 caactcttat ttgaaaatga taaaagtaag tggtgcggat gaaaggactt gaaccttcac
      781 gcattgctgc accagatcct aagtctggcg tgtctgccaa tttcaccaca tccgcaaagt
      841 ggtacgccca agaggattcg aacctctgac ctacggctta gaaggccgtt gctctatcca
      901 gctgagctat gaacgcatat aaaatcttgg tggtgcgccc gataggaatc gaacccataa
      961 cctacagatc cgaagtctgt cgctctatcc agttgagcta cgagcgctag tggggtgagt
     1021 gatgggaatt gaacccacga ccctcaggac cacaatctga tgctctaacc gactgagcta
     1081 cactcaccat tttgtataaa tttataaaaa atggtcgggg tgaaaggatt cgaaccttcg
     1141 gccccttggt cccaaaccaa gtgcgctaac cagactgcgc tacaccccga ataaataaaa
     1201 ggaaatattt tatcacaaaa taattttaaa gtcaaggatt ttcatctctt attcttaaaa
     1261 acaccggaaa gcgaggtaag gaatttttgg tcaatccatt aaatttataa gtcacaatac
     1321 taccaatttt tggaggattt tttctatctt catcttttaa accactgcct attttaatga
     1381 tttgtccatt aggcatttta caaagtaagg cacctacttg attttcaaat ttacccttgc
     1441 ccttgcgaaa tcctaccaac tcacattctg catcatcata gggttttaat ttcgtggcat
     1501 ttttacttct gcctttttca taaggactta aatttttgcg tataacaata ccttcacctt
     1561 gattttttat aatgctttcg taaaattgat ttaaattatt ttgattttca actggaattt
     1621 gagaaataat ttttatatag gcactaggat atttttgcaa atactcttct aaaacagcca
     1681 aacgattttt aagagtgcaa gtagaaattt gaaattcttc gcaagcattt ggtacatcaa
     1741 aaatattata agttacttcc ttccataagg tcaaattgct atcgccacta cgaattaaag
     1801 ctgaaatttc atcaaattta tttcttgcta tccaaagctc accatcaata gcaaaaggag
     1861 ggaaattttt tgtaaaaaag tcaggagttt ttattttgta gttttggcga gtttttagat
     1921 atttcccatc ccaaattcca cgcactccat caagtttttc gctcatcaaa taagcattaa
     1981 aatctttaga gttaaaatct tgcttatcga atttgctaag aagtaaaatt tcattagcaa
     2041 aaactaaaca agcacaacat attaaaaaaa caaacctcat caaagcagat taatcatata
     2101 tccagttgca tctttttgaa tattataatt ataagttcca tcaagatata ttacaagtcg
     2161 ataatatcct ttatgagatc caaagtctat gcgtttaaaa atagaattgc taaggcgtat
     2221 gttttttgta gggctaatca ttttagatct aaaatctata acgattttac ttggatttcc
     2281 tactgaaaaa tctgtaatca tttcatcact agtgttaagt tttattttat ttttataaac
     2341 cgcataagaa ataaaatcat aaatctttgc aacctgtaaa ggtatttcaa cattggctgt
     2401 tgagtttgat tcttgtttag agctattttt ttcaggtata gtaactgaaa catcaagtac
     2461 ttttgaagga tcagggcttt taaatcttga tatagtataa gtatcgtgcc aatcaatact
     2521 tttattgaca tctaaatcga tcttatcttc acttccgtct aaattgatat aattaaaagt
     2581 gatgcttttt aaaattcttg cactagaatt aaatttaact tcctcttttt gaaattcagg
     2641 tggagcaacc aaggttatat tttgatctgt cttgaaagga ttttcatcag catataaaag
     2701 agaggtaaaa ataaaaaata ttgccaaaat tctagttttc atttgggtat aatcctttta
     2761 attcaaaata atctttttgt gctttagcat tttgttcttt gagcaaaata atctttttat
     2821 taagctcttc tttggtattt tctaagctta ataaagtatc taaagaatac tgcccaaaaa
     2881 acatattgcc aaaataaatc gctccaatta caacaagaaa agcccaaaaa atcattttta
     2941 taacatgggt ataaaaactt ttttttcttg tgctttcgtc gtattcttta agtaaatcgc
     3001 tcagagcttt tctcctaaat attcatcgct ttcaaattca atttcaagta agcgattgta
     3061 ttttgcggtt ctttcgcctc ttgctagggc tcctgtttta atttgtcctg tatttaaagc
     3121 cacagcaaaa tccgctataa aagcatcttc actttcgccg cttctatgac tcatcacaca
     3181 tttatagtta tttctttgcg ctaaacgcac agttctcata gtttgggtaa tagttccgat
     3241 ttgatttggt ttgataagta cagcatttgc catttttttg atgatacctt ctcttaaaat
     3301 atcttcattg gtcacaaaca aatcatcgcc tacaagctga attttattgc ctaatttttc
     3361 agtcagcttg atccagcctt caaagtcatt ttcagctaag ccatcttcga tactgcaaat
     3421 tggatatttt gcacaaagtt ctacatagcg ttcgatcaaa gcctcgcttg aaaaagcctt
     3481 gccttccatg tggtatttac catctttgaa aaattctgta cttgccacat caagagcaat
     3541 ttttacacga ttttcataac ctgctttttt gatacaagtc attaaaagat cgataggttc
     3601 tgtgttgtta gctaaatttg gagcaaaacc gccttcatca cctaaagccg tagaatgtcc
     3661 agaatttgcg agttcttttt ttaatatcgc ataaatttca caaactgaac gcaaagcttc
     3721 tttaaagcta gtaaaaccaa aaggcatgat cataaattct tgaaaatcta cattgttgtt
     3781 tgcatgagca ccgccattta tgatattaca cattggcacg ggtaaaatgc tcgcatttgc
     3841 accacctaag tagcgatata aaggcattcc caaagcagct gcagccgcac gagctgttgc
     3901 catagatacg cctaaagtcg catttgcacc taaatttgag taattatttg ttccatcgag
     3961 ctcacgcaaa gtatcatcaa gttgagtttg attaaaagca tctagtccta aaatttcatc
     4021 tgcaatggtc tcattgacat ttgcaacagc ttttaaaacg ccttttccgc caaatctttc
     4081 atcattatca cgcaattcta aggcttcttt tgaacctgta cttgcaccac ttggaactat
     4141 ggccgcacct acacttccat cgcttagcgt aacttcggct tttacggttg gatttcctct
     4201 actatcaaga acttcatagg ctctaacatc ttcaattact aacattattc ttctccttcg
     4261 tcatcttcgc taccgctgat cataccttct attcccatag aattttgaat tgcttttgtg
     4321 atttcatctg caatttcagg gttttctttt aagaaagctt ttgaattttc tctaccttgt
     4381 ccaagttttt tatctttata agaaaaccac gcaccacttt tatctacgat atcaagtttt
     4441 acaccataat cgatcaattc accttcacgg cttaaaccct ctccaaacat cacatcaaat
     4501 tcagcttgtc tgaatggagg agcaacttta tttttaacta cttttacttt aacgcggttt
     4561 cctataggtt cttcgttttg ttttaaggtt gctacttttc taacatctaa acgcacagaa
     4621 gcataaaatt ttaatgcatt tccacctgtt gtggtttcag gagtaccata acccatagca
     4681 ccgattttca tacgaatttg gttgataaaa attactgtgg tattcatttt atgaactata
     4741 cctgtaagtt ttcttagagc ttgagacata agtcttgctt gaagtcctac atgttgatcg
     4801 cccatatcgc cttcaatttc tgcttttgga gtaagtgctg caacgctatc tactacgata
     4861 agatctactg cgccacttct tgctatagtt tctacaattt ctaaggcttg ttctccaaaa
     4921 tcaggctgag aaacatacaa atcatctgta tttacaccca aatttttagc atattttaca
     4981 tcaagcgcat gttctgcatc gataaaagca caaactccac ctgctttttg gcattctgcg
     5041 ataatatgta aagttagagt ggttttacct gaactttcag gtccataaat ttctataatt
     5101 cttccttttg gaacaccgcc tatacctaaa gcaagatcaa gcccaactga acctgtgcct
     5161 atgctatcga tttgctcgac ttctttatcc cctagtctta aaatagtgcc ttttccaaag
     5221 gttttatcta aactttttag ggcagcgtct agagattttc ttttattatc atccataact
     5281 ttccttaaaa attctaaatt tttagttaga attctaacaa aataaaatta aataatgatt
     5341 tattttgcta gaattaaagc aaagatttaa aggaagcata gatgaaaaaa attactattg
     5401 cacattctcc tgatgctgat gatattttta tgtatatggc aattaaattt gggtggatag
     5461 ggaatgattt tgcttatgaa aatacagctt tagatataca aactttaaat gaatttgcct
     5521 tgaaaaatga atttgatgct acggctattt cttttgggct ttatccttta atcgcttctg
     5581 agtatgcact tttacgcaca gcagtgagtt ttggtgaagg ttatgggcca aaactcatca
     5641 agaaaaaaga cacgcattta aaaagaaatt ttaaagtcgc tttgagtgga gcaaatacca
     5701 ccaatgcttt gatttttcgc atgaaatatc ctgaagcaag aattatttat aagaattttt
     5761 tagacattga aaatgcggtt ttaagtggcg aagtagatgc gggggttttg atccatgaaa
     5821 gcattttaaa ttttgatcaa agtctttacg tggaagcaga actttgggat atatggcttg
     5881 aatttgctaa agaaaatttg cctttgcctt taggtggaat ggctttgcgt cgttctttac
     5941 ctttaagcga cgcgattaag atcgaaagag atttaaccaa tgctgtaaaa attgccgatg
     6001 caaatcgtaa aattttagcc cctatgctta tggaaagaaa acttatccgt gttgatgaag
     6061 aaaaacttga tacttatctt aatttatatg ccaataaaaa ctctattagc atgaatcaaa
     6121 ctcaactttt agctgtagat acgcttttta aactaggata tgattataaa ttttatgata
     6181 aaatcataca tgtaaatgat tttcttatcc ctagcgaata cgaagaagct agaaattctt
     6241 aaaaaggata aaaatggatg aaagtacctt agttgctctt ggagtgcaaa cctttaaaat
     6301 cacactttta ctttccttgc ctatgctttt agcaggactt attgcagggc ttgtgatcag
     6361 tatttttcaa gcaactacac agattaacga aatgacactt tcttttgttc ctaaaatcat
     6421 cttggttgta gttattttaa tctttttaat gccttggatg actacaacta tgattgattt
     6481 tactgagaat atactaaatc aaattccaac ttttatcaaa tgatcattga ttttaaaaaa
     6541 tactcttctg tgcgtatagg aaatgaattt gaagttttag ttttggatca aatttgtgat
     6601 tttgatggtt ttttaatagg tggtgcaaac aaccttttag ttagtccaaa acctaaaaat
     6661 ataggaattt taggagatgg ttttaatttt atacaaattt tagatcggaa taaagatttt
     6721 atacatcttc gcataggctg caaaacaaaa tcaagtaaaa tgtatcgctt tgccaaagaa
     6781 aacaatctta agggttttga gtatttaagc aaaattcctg gtacacttgg cgggcttttg
     6841 aaaatgaatg caggacttaa aggagagtgt atcagtcaaa atttaatcaa aattgctact
     6901 tctcaaggcg aaattctaag agcaaatata aattttgatt atcgtttttg tcctttaaat
     6961 acgcattttt tttgggctga atttaaacta aactttggct ttgataccct taaagatgaa
     7021 gctttaaaaa atgcaagaag caaccaacct agtggagcaa gctttggctc tatctttaaa
     7081 aatccgaaaa acgactttgc aggacgttta atcgaagctg taggacttaa aggatttagc
     7141 aagggagatg ctatgttaag cgataaacac gcaaattttt taattaataa aaaaaatgca
     7201 agttttgaag atgcgttttt tcttatcgaa ttggctagaa aaaaagtctt tgaagaattt
     7261 ggcacaaact tagaaaatga agtgattata atctaaacac
//
LOCUS       DAPIWQ010000085         7242 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.085, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000085 DAPIWQ010000000
VERSION     DAPIWQ010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7242)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7242)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7242
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.085"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            33..1106
                     /gene="ispG"
                     /locus_tag="RJ267_001217"
                     /gene_synonym="gcpE"
     CDS             33..1106
                     /gene="ispG"
                     /locus_tag="RJ267_001217"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HDV7389069.1"
                     /translation="MEYKRFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQI
                     NRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVYCAEFIDGVRI
                     NPGNIGSKENIKEVVKACKERGIPIRIGVNHGSIEKQFSDKFGYGVDAMLESAMYNIK
                     LLEDLDFFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTVKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIRVARAILQDSGVQKSGVNIISCPTCGRIQSDLLS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ESELVDRFLAEVEDEVKSRAVKE"
     gene            complement(1136..1834)
                     /gene="flgH"
                     /locus_tag="RJ267_001218"
     CDS             complement(1136..1834)
                     /gene="flgH"
                     /locus_tag="RJ267_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HDV7389070.1"
                     /translation="MKKVLFYVLPFAFFGCSATVDPQISMKPPAYVEELAPKQSNNIE
                     SAPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGSSGVVANALNKVNAYSNIGFQTNSSNNYTGTGSQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSKYIADAKILYKTEGEVDRSAR
                     KPWGSKVIEAIWPF"
     gene            1924..3429
                     /gene="pta"
                     /locus_tag="RJ267_001219"
     CDS             1924..3429
                     /gene="pta"
                     /locus_tag="RJ267_001219"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HDV7389071.1"
                     /translation="MMANLYLMRSRSDELNTIISTNLLKNYSKIYKNIAIYCPVIYIH
                     RVPVLQGWLEEFNINQTVKSAYGFTFREAMEEFSKDPHNFFNVILEEYEELKRKYDFV
                     LVNSFCEFGILDGFDLSIKLAKNLNTPIAAIINDEDKLIAQKYFDHALDGRNYVLINE
                     NFNFEEVQKLKEYDFITPHRFKYELIKQSIKNKKTVVLPESNDERILKAAEILLKSKV
                     VDLILLGDEEKIKQDSAKLSLDLNTIRIINPLKSEYNQEFASILYEARKSKGMSLEEA
                     RKLVQDKTYFGTLLIHTGKADAMVSGASTTTAETIRPALQLIKTKEGISSVSGIFFMG
                     LEDQVLAFADCAVNPSPSAEQLATSAYVSAMTAKSFGLEPRIALLSYSSGDSGKGESV
                     DLVKEALKIAKEKYPELNIDGPMQFDCAYDPKTAAKKMPNSKIAGHANVYIFPDLNAA
                     NICYKAVQRTANALAIGPILQGLKKPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            3443..4633
                     /locus_tag="RJ267_001220"
     CDS             3443..4633
                     /locus_tag="RJ267_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HDV7389072.1"
                     /translation="MKILVLNSGSSSIKFKFFDNKIVKASGLVEKIGEQNSKVVLKNT
                     LNNESFERELTINNHEEGLSIVNELFKESGILADLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANAAIFDTAFHRTMPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAYVSSRAAKFLQKDQNELNVISAHLGNGASVCAIEKG
                     KSMDTSMGFTPLEGLIMGTRCGDLDPAILPFVSHLKGLTIEEIDTLMNKKSGVYGICG
                     YNDFRDIEREIEQGNDKARLALDMFCYRLVKYIGSYFAVLPKTDAIIFTGGIGENDSL
                     VRQKVCERLAHLGIELDFELNKQRISGERMINHANSKVKVLVIPTDEELEIARITEEL
                     IGKN"
     gene            complement(4661..>7242)
                     /locus_tag="RJ267_001221"
     CDS             complement(4661..>7242)
                     /locus_tag="RJ267_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HDV7389073.1"
                     /translation="SVEHLGTIYEGLLSYFFEIANEDIYYVSYKEKSKEIECYFDNYD
                     FKILEKSKKVEKYTFYKKGQIYLKNSSNSRKSTASFYTPQSIANFLIQSALKDKLNNE
                     NILKFKILDNACGSGHFLVGVLNAITHIVLSDFDHFTNLKELYEEEKENILNYIKDFV
                     QDYEVDESDILKRLLLKRIIYGVDLNPFSIELTKLSLWIDSFIFGTPLSFIEHHIKCG
                     NALINSNLSDFKDLIKQNSSNLFTNSITQEFEILQEVFEKLDNLKDTNEEQIKQSKQI
                     YQNEITPKLNKLNLYLNYINTLHFVNKEELQILKALSQDDIQNLSQNEQAKNIISKYQ
                     KEFNFFNYELEFPEITENQVFKGFDIIIGNPPWDKTKFSDSDFFPQYKSDYRSLIASK
                     KKEIQDNLLAKDYIKQNYEKQKAYINDLNEYYKKAYPLNKGSGDGNLFRLFVEKNLSL
                     LKQDGNLAYVLPSALMFEDGSLILRKEILENKTLEYFYSFENNKAIFIDVHRSYKFAL
                     MLIKNTQANHTHKIKMMFYKTDINSLKNKDEILTLNLKDIKKLSPTHLALMELKDKQA
                     LEILRKSYNAFQNLSFDYIDFRRELDMTNDKDLFIEEFREGLLPLYEGKMIHQFDANF
                     SQATYFLEKAKFDERLKSKELYRAKKATGKELNPKLIKYDREFFRLGYRKIASDTNER
                     TLIASLLPKNCGGADSTYSNIPKQYVLKDDVICMDIVPYERILFVLALFNSLVVDFII
                     RNMVQINVSKSYLERIPLPQPSDEEIQNNEIYKTLAKNALLLQLYNDQNHHFDELKQE
                     FNIKNEEIPKTKKAYDILRAKNDLLVKELYGLSDDEFSYMISTFKVLNEKQSEYITLL
                     KTI"
BASE COUNT         2406 a          981 c         1217 g         2638 t
ORIGIN      
        1 tttgatatta aaatttttca aagagtgaag ttatggagta taaaagattt aaaaccagac
       61 aaatcaaagt aggaaatgtt ttaataggcg gtgatgcacc catttcagtt caatctatgc
      121 tttttactaa aacaagagat atagaaggtt ctttagaaca aatcaatcgt ctttattttg
      181 caggagcaaa catagtgcgt ttggcgtgct tggatatggc tgatgcaagg gctttaaaag
      241 agattaaagc taaaagtcct ctacctttaa tcgtagatat tcattttaat cataatttgg
      301 ctgtatattg tgctgaattt atcgatggcg tgcgtataaa tcctggcaat ataggctcta
      361 aagaaaatat taaagaagtg gtaaaagcat gtaaagaacg gggtatccct atacgcatcg
      421 gtgtaaatca cggctccata gaaaaacaat ttagtgataa atttggttat ggtgtcgatg
      481 ccatgctaga aagtgcgatg tataatatca agcttttaga ggatttagac ttttttgata
      541 ttaaaatttc catgaagact tcagatgctc aaaaaactat agaagcttat gagagattaa
      601 gaccgctttg tgattatcct tttcacttag gggtaactga agcaggaact aaatttcata
      661 gcactgtaaa aagttctata gctttaggaa atttacttct taaaggtata ggcgatacta
      721 tgcgtgtttc tatgacgggt gagcttgaag aagaaattcg tgtagcaaga gcgattttgc
      781 aagatagtgg agtgcaaaaa agcggagtaa atatcatctc atgtccaact tgcggtagga
      841 ttcaaagtga tttgttaagc gcgattaaaa tcgtagagga aaaaaccaag catataaaag
      901 aacctttaaa tatcagtgtt atgggttgtg tagtaaatgc tttaggtgaa gctaagggcg
      961 ctgatgtggc tatagccttt gggaaaaatc aaggacttgt tataagacat ggtgaagttg
     1021 tagctaaatt aaaagaaagt gaacttgtag atagattttt agctgaagtt gaagatgagg
     1081 ttaaaagtag ggctgtaaaa gaataaaagc caagaagcaa ggtttaacct tgcttttaga
     1141 atggccatat cgcttctata actttgctac cccaaggttt tcttgcgctt ctatccactt
     1201 caccttctgt tttataaaga attttagcat ctgctatata tttactatct atagtattgt
     1261 cttgaccgat gtcataagga cgaataacac cgcttaattg tatgatttgt ttctctccgt
     1321 tgattaaaag ctctcttgag ccttcgataa aataattacc atttgataaa attttaatta
     1381 cacgcgttga aattgtagta ttgaaacttt catttctgct ttgcgaaccc gttcctgtgt
     1441 agttgtttga actattggtt tgaaagccta tattagaata agcattgact ttattaagag
     1501 cattagctac cactcctgaa cttcctgtta aagcacctcc gcctaaattt gaggtattag
     1561 ttctacttgt tgctttatta gcttgtgtgc tttgagtggt actttcttgt ataacaactg
     1621 taactaaatc atttacattc atagcttttt tatctgaaaa taaaggatta tcccctttgc
     1681 caaaaagcga tcctggtgca ctttctatat tattactttg ttttggtgca agttcttcta
     1741 cataagcagg tggtttcatt gaaatttgcg gatcaaccgt tgcagaacaa ccaaaaaatg
     1801 caaacggtaa cacataaaat aaaacttttt tcattttcgt cctttaaaat atgaattttt
     1861 atttttcttt gttaaaatta gaaaaagcaa agagtgttcc acatttataa attcaaggag
     1921 aaaatgatgg caaatcttta tttgatgaga tctagaagtg atgagttaaa tactattatt
     1981 agtacaaatt tgcttaaaaa ttatagcaaa atttacaaaa atatcgcaat ttattgccct
     2041 gtaatataca tacatcgcgt ccctgttttg cagggttggt tggaagaatt taatatcaat
     2101 caaaccgtaa aaagtgccta tggttttacc tttagagagg caatggagga atttagcaaa
     2161 gatcctcata atttttttaa tgttatttta gaagaatacg aagagttaaa acgcaaatac
     2221 gattttgtgc ttgtaaatag tttttgcgaa tttggaatac ttgatggatt tgatcttagt
     2281 ataaaattgg ccaaaaatct taatacacct attgctgcta ttatcaatga tgaagataaa
     2341 cttatagctc aaaaatattt cgatcatgct ctagatggtc gtaattatgt tttgattaat
     2401 gaaaatttta attttgaaga agtgcaaaaa cttaaagaat atgattttat aactcctcat
     2461 cgttttaaat atgaattgat taaacaaagt ataaaaaata aaaaaaccgt tgttttgcca
     2521 gaaagtaatg atgagagaat tttaaaagct gctgaaattt tattgaaaag taaagttgtt
     2581 gatcttattt tattgggtga tgaagaaaaa atcaagcaag atagtgctaa attaagtctt
     2641 gatttaaata ctatacggat tataaatcca ctcaaatcag aatataatca agaatttgct
     2701 tctattcttt atgaagcaag aaaatctaaa ggtatgagtt tagaagaggc taggaagcta
     2761 gttcaagata aaacttattt tggaacttta cttatacaca ctggaaaagc tgatgctatg
     2821 gttagtggag catcaactac tacggctgaa acgattcgcc ctgcattaca gcttattaaa
     2881 actaaagaag gtattagttc cgtttcagga attttcttta tgggacttga agatcaagtt
     2941 ttagcttttg ctgattgtgc tgtaaatcca agcccaagtg ctgagcaact tgcaactagt
     3001 gcctatgtaa gtgctatgac tgctaaatct tttggacttg aaccaagaat agctttgctt
     3061 tcttattcta gtggtgatag cggtaaagga gaaagcgtag atcttgtaaa agaagcatta
     3121 aagattgcta aagaaaaata tcctgagttg aatatagatg gtcctatgca gtttgactgc
     3181 gcttatgatc caaaaactgc agcaaagaaa atgccaaatt ctaagatagc aggtcatgca
     3241 aatgtgtata tttttcctga tcttaacgca gcaaatattt gttacaaagc agttcaaaga
     3301 actgctaatg ctttagcaat cggtcctatt ttgcaaggtc ttaaaaaacc tgttaatgat
     3361 ttaagtcgtg gatgtttggt agatgatatt gtagataccg taattttaag tgcaatacaa
     3421 gctcaataga aaggaatgat aaatgaaaat tttggtttta aattcaggtt cttcatcgat
     3481 taaatttaaa ttttttgata ataaaatcgt taaagccagt ggattagtag aaaaaattgg
     3541 agagcaaaat tcaaaggttg tattaaaaaa tactttaaat aatgaaagtt ttgaaagaga
     3601 attaacaata aataatcacg aagaaggcct tagtatagtt aatgagcttt ttaaagaatc
     3661 aggaatttta gcagatttaa atgcacttga tggctgcggt catcgtatag ttcatggggg
     3721 aagaaattta agcgagcatt gtttagtaga tgactatgtt cttaaagaga tagatagggt
     3781 tagtattttt gctcctttgc ataatcctgc gcatttagca ggtataaaaa caatgatcaa
     3841 agctgcacct agtgttgcta atgcagctat ttttgataca gcttttcatc gcactatgcc
     3901 tgattttgct tatatgtatg ctttgcctta tgatttttat gataagcata atattagaag
     3961 atatggtttt catgggactt ctcatgctta tgttagttct agagcggcaa aatttcttca
     4021 aaaagatcaa aatgaattaa atgtcatctc tgctcatctt ggaaatggtg caagtgtatg
     4081 tgctatagaa aaaggtaaga gtatggatac ttctatgggc tttactccac ttgaaggact
     4141 tattatggga acgcgttgtg gagatttaga ccctgctatt ttaccttttg ttagtcatct
     4201 taagggttta actatagaag aaatagatac actgatgaat aaaaaaagtg gagtatatgg
     4261 aatttgcggt tataatgatt ttagagatat agaaagagag atagaacaag gtaatgataa
     4321 agcacgcttg gctcttgata tgttttgtta tcgtcttgtt aaatatatag gatcctactt
     4381 tgctgtgttg ccaaaaaccg atgctattat ttttacaggt ggtataggag aaaatgatag
     4441 tttggttcga caaaaagtat gcgagagatt agctcatctt ggtatcgagt tagattttga
     4501 acttaacaaa caaaggattt cgggcgaaag aatgataaat catgcaaatt ctaaagttaa
     4561 agtgcttgtt attcctacag atgaagaatt agaaatcgct agaattacag aagaacttat
     4621 cggtaaaaat taaattttaa aaactatata aatctttcat ttatatagtt tttagcaagg
     4681 ttatatattc actttgcttt tcatttaaaa ctttaaaagt gcttatcatg taagaaaatt
     4741 catcatcact taaaccataa agttctttaa ccaataaatc attttttgct cttaagatat
     4801 cataagcttt tttagttttt ggaatttctt cattttttat attaaattct tgttttagct
     4861 catcaaaatg atgattttga tcattgtaaa gctgtaaaag caaagcattt ttagcgaggg
     4921 ttttataaat ttcattgttt tgaatttctt catcacttgg ttgaggcagg ggaattcttt
     4981 ctaaataaga tttgcttaca ttgatttgca ccatatttct tatgataaaa tcaaccacta
     5041 aagaattaaa caaagctaaa acaaataaaa ttctttcata aggcactata tccatgcaaa
     5101 ttacatcatc ttttaaaaca tattgttttg gaatgttact ataagtacta tcagctccac
     5161 cgcaattttt tggtaataaa gaagctatca aagttctctc atttgtatca cttgcaattt
     5221 ttctatatcc gagtctaaaa aattctctat cgtattttat taatttagga tttaattctt
     5281 tcccagtagc ttttttagct ctataaagtt ctttactttt taaacgctca tcaaatttag
     5341 ccttttctaa aaaataagta gcttggctaa aatttgcatc aaattgatgt atcattttac
     5401 cttcatataa gggtaaaagt ccttccctaa actcttctat aaacaaatct ttatcgtttg
     5461 tcatatcaag ttctcttcta aaatctatat aatcaaaaga caagttttga aaagcattat
     5521 aagattttct tagaatttct aaagcttgct tgtcttttaa ctccattaag gctaggtgag
     5581 ttgggcttag ctttttgata tcttttaaat ttagagttaa aatttcatct ttgtttttta
     5641 atgagtttat atctgtttta taaaacatca ttttgatttt atgagtgtga tttgcttgcg
     5701 tgttttttat aagcataaga gcaaatttat agcttctatg aacatctata aagatagctt
     5761 tgttgttttc aaaactataa aaatactcta aagttttatt ttctaaaatt tcttttctta
     5821 aaattaagct tccatcttca aacatcaaag cactaggaag tacataagct aaatttccat
     5881 cttgttttaa aagagaaaga tttttttcta caaaaagacg aaataaattt ccatctccac
     5941 tgcctttgtt taaaggatag gcttttttat aatactcgtt taaatcattt atatatgctt
     6001 tttgtttttc gtaattttgc tttatataat cttttgctag caaattgtct tgaatttctt
     6061 ttttcttgct agcgattaag cttctataat cgcttttgta ttgtggaaag aaatcgctat
     6121 cactaaattt agttttatcc caaggtggat tacctataat gatatcaaag cctttaaaga
     6181 cttgattttc tgtgatttca ggaaattcta actcatagtt aaagaagtta aattcttttt
     6241 gatatttgct aatgatgttt tttgcttgtt cattttggct taaattttgt atatcatctt
     6301 ggcttagggc ttttagaatt tgtaattctt ctttgttgac aaaatgaagc gtgttgatat
     6361 agtttagata taaatttagt ttattaagtt ttggtgtgat ttcattttga tagatttgtt
     6421 tagattgttt gatttgttct tcgttggtat cttttaggtt gtcaagtttt tcaaatactt
     6481 cttgtaaaat ttcaaattct tgtgttatgg aatttgtaaa aaggttgctt gagttttgtt
     6541 ttatcaaatc tttaaaatca cttagattag aatttatcaa agcattgccg cactttatgt
     6601 ggtgttctat aaaagaaagt ggggttccaa agataaaact atctatccaa aggctaagtt
     6661 tagtaagctc tatgctaaaa gggtttaaat ccaccccata aataatgcgt tttagtaaaa
     6721 gtcgttttaa aatatcactc tcatctactt catagtcttg cacaaaatct tttatatagt
     6781 ttaaaatatt ttctttttct tcttcgtaaa gttcttttaa atttgtaaaa tgatcaaaat
     6841 ctgataaaac aatgtgtgta atagcattta aaactccaac taaaaaatgt ccactaccgc
     6901 aagcattgtc tagtatttta aatttcaaaa tattttcatt gtttagtttg tcttttaaag
     6961 cactttggat taaaaaatta gctatggatt gaggtgtgta aaagcttgct gttgattttc
     7021 ttgaattact agaattttta agataaattt gtcctttttt ataaaaggtg tatttttcta
     7081 ctttttttga tttttctaaa attttaaaat cataattatc aaaataacat tctatttctt
     7141 ttgatttttc tttataactt acatagtaaa tatcttcatt tgctatttca aaaaaataag
     7201 aaagcaagcc ttcataaatc gtgcctaaat gttctacact ta
//
LOCUS       DAPIWQ010000086         7162 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.086, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000086 DAPIWQ010000000
VERSION     DAPIWQ010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7162)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7162)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7162
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.086"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(147..476)
                     /locus_tag="RJ267_001222"
     CDS             complement(147..476)
                     /locus_tag="RJ267_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HDV7389074.1"
                     /translation="MSNILKEEKNHLENSNSKRQKIIRKTLEAADGLSLGISMVVAVF
                     IGVGIGYLLKKFTPYPWLFWLGVFWGIGAAILNVYKAYKVQVKSYEEFKERDELIKEK
                     IQKEKNK"
     gene            complement(473..1747)
                     /gene="hemL"
                     /locus_tag="RJ267_001223"
     CDS             complement(473..1747)
                     /gene="hemL"
                     /locus_tag="RJ267_001223"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HDV7389075.1"
                     /translation="MTNKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIF
                     DIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDF
                     PHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLEDVAKRTLVAKYNDINSVKELFEKNKDIACVIIEPIAGNMGLVPAKQDFL
                     EELAKICKNNQTLLIFDEVMSGYRASYLGSYGINHIQADIITFGKVIGGGLPAAAFAS
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLTKAKKKTKLYDKLGKLAKKLTQGM
                     KKLADEKGLPLQACHVGSMFGYFFTKDPVSNYQDALKSDLALFSKFHKNMLENGIYLA
                     PSQFETGFICSKMDDKIIDTTLEAVRESFKRI"
     gene            complement(1744..2091)
                     /locus_tag="RJ267_001224"
     CDS             complement(1744..2091)
                     /locus_tag="RJ267_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389076.1"
                     /translation="MKIVLMFFLFSINLFGADFITLKEYSKMLYENPRGISCKECHGA
                     DGSEQILGYYMKNGIKTAYKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVT
                     LYNYIKQFSKEEK"
     gene            2171..3019
                     /gene="folD"
                     /locus_tag="RJ267_001225"
     CDS             2171..3019
                     /gene="folD"
                     /locus_tag="RJ267_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HDV7389077.1"
                     /translation="MTLLDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDNPAS
                     QTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHI
                     CKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLEGKDA
                     VIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDM
                     VKEGVIVVDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKS
                     AKNRLN"
     gene            3029..3877
                     /gene="lepB"
                     /locus_tag="RJ267_001226"
     CDS             3029..3877
                     /gene="lepB"
                     /locus_tag="RJ267_001226"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDV7389078.1"
                     /translation="MEILKKLYKFSQSWTGTVVIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFNKDGHLIKAQGPQRGDIVVFRNPRNEKE
                     HFVKRCVGTGGDRIIYANKTLYVRMHEGDEFMKEHYPNDLVTLGGQIYVKEPYKQKGI
                     HYDPKKDIESDILRFLSIGDFAMSPTYIKELGNHIGFSGGNAYVFDVPENEYFMMGDN
                     RDYSYDSRFWGSVPYRLIVGKPWFVYFSWDKDKNVRWERIGRFVDTLENDEQYIHDHD
                     DEDKLS"
     gene            complement(3899..5059)
                     /locus_tag="RJ267_001227"
     CDS             complement(3899..5059)
                     /locus_tag="RJ267_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDV7389079.1"
                     /translation="MKNIFKTLKDLEDQISCLDESELISLEKAKDRILAKDLYARKNL
                     PSFDNAALDGYAFNYTDINEALEIKGTIFAGDKNFYTVAKNECYKIMTGAKMPKNADT
                     ILMLEDEYIEENKLIIKKAPKQYNAYRYKGEELKKGEILLRKGTKLNDKHIALLASQG
                     LYKIEVIRKIRIGIFSSGNELKEPWQECDEESIYNANALPLLTMLQNASYLGIIKDDF
                     KSTKEALENTNFDLLITSGGASVGEADFMEKALDELGFTPLFKGLKARPARPTKLYRK
                     GENFVLILPGNPMAAYLSCFIFAKKIIALLSGSLDNPLKFHATMGMDLKLKSGRNNLI
                     LGNLEKDIFTPFNENKFGSGMILPLIKSEFLLISEENTSELKKGDEITLLKI"
     gene            complement(5056..6312)
                     /gene="murA"
                     /locus_tag="RJ267_001228"
     CDS             complement(5056..6312)
                     /gene="murA"
                     /locus_tag="RJ267_001228"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HDV7389080.1"
                     /translation="MTFLEIKGVDSLEGEVQISGAKNAALPLIASTILAKNEVKISNV
                     PNVADIKTLISLLENLGARVNFQNNSAFLNTNTLNQTIAKYDIVRKMRASILTLGPLL
                     ARFGHCEVSLPGGCAIGQRPIDLHLLALEKMGANIQIKQGYVVASGNLKGNEILFDKI
                     TVTGSENIIMAAALAEGKTKLLNVAKEPEVVQLCEVLKDAGLEIKGIGTDELEIYGSN
                     GELLEFKEFSVIPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFETLI
                     TEDSITLLPAKEIKPVEIMTSEYPGFPTDMQAQFMALALKANGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALAAKGTSKVHRI
                     YHLDRGYENLEEKFKGLGAKITRLEE"
     gene            complement(6373..6771)
                     /locus_tag="RJ267_001229"
     CDS             complement(6373..6771)
                     /locus_tag="RJ267_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389081.1"
                     /translation="MKIDNTLKELSQYTKINTDNTQKEKETKDTQKLDSAVEVTISKE
                     AKEKSSKQLQSKNNQNSNESNSQDDNTDKLAELMQKLAEIQAKIAELTGKMANADKNQ
                     LASLQSQVATLIGQSATIQAQIQEIQNQQK"
     gene            complement(6841..>7162)
                     /locus_tag="RJ267_001230"
     CDS             complement(6841..>7162)
                     /locus_tag="RJ267_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002916151.1"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HDV7389082.1"
                     /translation="GHQCIAEVFGGRVSKMQNPMHGKISKLYFKKDPIFKGIKKEIEI
                     CQYHSLHISKMPKKCKILAKNSQDIIMAIKHKKYSIYGIQFHPEAILSQQGKKILRNF
                     MKIC"
BASE COUNT         2274 a         1149 c         1113 g         2626 t
ORIGIN      
        1 agcaaaaata atcaataaaa cactaaaaaa agctatttca tagcttaaaa atgtatctaa
       61 tttaaaatga tttaacgatg aaaatatgat ccaaaaaaat aaatgaataa tggcaaaaat
      121 acaaaataga gcttttttat gttccattat ttattctttt ctttttgaat tttttctttg
      181 atcaactcat ctctttcttt aaattcttca tagcttttta cttgaacttt ataagcttta
      241 taaacattaa gtatagcggc accgatcccc caaaaaactc caagccaaaa aagccaagga
      301 taaggagtaa attttttaag caagtatcct attcccacac ctataaatac agcaacaacc
      361 atagagatac caagacttaa accatccgca gcttcaagag ttttgcgaat gattttttgt
      421 cttttgctgt tggaattttc taagtgattt ttttcttctt ttaaaatatt actcatattc
      481 ttttaaagct ttccctaaca gcctctaatg ttgtatctat aattttatca tccatttttg
      541 aacatataaa gcctgtttca aattgagaag gtgctaaata aattccattt tcaagcatat
      601 ttttgtgaaa ttttgaaaat aatgctagat cagattttaa tgcatcttgg tagtttgata
      661 caggatcttt ggtgaaaaag tatccaaaca tagaacctac atgacaagct tgcagtggaa
      721 gtcctttttc atctgctaat tttttcattc cttgggtaag tttttttgct aattttccaa
      781 gtttgtcata aagcttggtt ttctttttgg cttttgtaag acttgctata cctgcagcca
      841 ttgccaaagg atttccactt aaagttcctg cttgataaac tccacctaaa ggacttaaaa
      901 tatccataat ttcagctcta gaagcaaatg ctgctgcagg tagaccgcct cctattacct
      961 taccaaaagt aattatatct gcttggatat gattgattcc ataggaacca aggtaagatg
     1021 ctctatatcc actcattact tcatcaaaaa tcagcagagt ttgattgttt ttacagatct
     1081 tagcaagttc ttctaaaaaa tcttgtttag ctggaactaa ccccatattt ccagcaatag
     1141 gctcaatgat aacacatgca atatctttat ttttttcaaa aagctcttta acgctattta
     1201 tatcattata ttttgctact aaagtgcgtt tagctacatc ttctaaaaca cctaaagaac
     1261 taggagagtt aaaagtagca gcaccacttc ctgcactcac taataatgaa tcagaatgcc
     1321 cgtgataaca tccttcaaat tttaaaattt tatctttttt agtaaagcca cgggcaagac
     1381 gaatagcact catggttgct tctgttccac tgcttacaaa gcggatcttt tctaaatgag
     1441 gaaaatcaga taaaacaagc ttggcaagtt cagtttctaa taaagtcgga gctccaaaac
     1501 ttgaaccttt atgaagtgct ttttgacaag ctttttgtat atctttatcg caatgtccaa
     1561 aaagtaaagg cccccagctt tgaacatagt ctatataaga atttccatct atatcgaaaa
     1621 tataagcacc ttttccatga gaaataaatt ttggctcact ttgaacattt gcaaaagcac
     1681 gaactggaga atttacaccg cctgcgatga atttacacgc ttctttaaaa gcttttttgt
     1741 ttgtcatttt tcttccttgc taaattgctt gatgtaatta tataaagtta caatttcatc
     1801 atttgttaaa gagtaatttg gcatgattga ttttgcgtct ttactctgat taagagaatt
     1861 tttaaaattc tcaaaactaa gattttgtat acttggaact ttataagctg ttttaatacc
     1921 atttttcata taatatccta aaatttgttc gcttccatct gctccatgac attctttaca
     1981 actaataccc cttggatttt cataaagcat tttagagtat tctttaagag tgataaaatc
     2041 agcaccaaaa agattgatac taaataaaaa aaacattaaa acaattttca aagtttcacc
     2101 ttgttaatga agttttaata tgatacaatt tttactttaa aaaagtgatt aaatttatag
     2161 aaggaaaata atgactttgc ttgatggtaa agctttaagc gcaaaaatca aagaagaatt
     2221 aaaagaaaaa aatcaatttt tgaaaagcaa agggattgaa agctgtttag ctgttatctt
     2281 ggttggagat aatcctgcaa gtcaaactta tgtaaaatct aaggctaaag cctgtgaaga
     2341 atgtggaatt aaatctttag tttatcatct taatgaaaat actacacaaa atgaactttt
     2401 ggcattgatt aataccttaa atcacgatga tagtgttcat ggaattttgg ttcagcttcc
     2461 cttacctgat catatttgta aagatttaat acttgaaagt attataagta gtaaagatgt
     2521 tgatggcttt catcctatta atgtaggata tttaaattta ggcttagaaa gtgggttttt
     2581 gccttgtact ccacttggag ttatgaagct tttgaaggct tatgaaattg atttagaagg
     2641 aaaagacgct gttattatag gtgcttcaaa tatagtaggt cgtcctatgg ctactatgct
     2701 tttaaacgct ggagctacag taagcgtttg tcatattaaa accaaagatt tgagccttta
     2761 tactaggcaa gctgatttga ttatagtagc agcaggttgt gtgaatttac ttcgatcgga
     2821 tatggtaaaa gaaggagtga ttgttgttga tgttggaatc aatcgtcttg aaagtggaaa
     2881 gatagttgga gacgtggatt ttgaagaggt atctaaaaaa tctagttata taactcctgt
     2941 tccaggcgga gtaggtccta tgactatagc catgctttta gaaaacacag ttaaatctgc
     3001 taaaaataga cttaattagg gaaaatctat ggaaatttta aagaaattat ataaattttc
     3061 acagtcttgg actggaactg tagttattgt tcttttggtg atttttttct ttatacaagc
     3121 ttttgttatt ccttctggtt ctatgaaaaa caccttattg gtaggggatt ttttatttgt
     3181 taaaaaattt agctatggta tcccaactcc tcatattcct tggttggaaa ttcctgtttt
     3241 gccggatttt aataaagatg ggcatttgat aaaagcacaa gggccacaaa gaggagatat
     3301 agttgttttt agaaatccta gaaatgaaaa agaacacttt gtaaagcgtt gtgtaggcac
     3361 aggaggagat agaataattt atgcaaataa aacactttat gtaagaatgc atgagggtga
     3421 tgaatttatg aaagaacatt atccgaatga tcttgttact cttggagggc aaatttatgt
     3481 aaaagaacct tataaacaaa aaggtattca ttatgatcca aaaaaagata tagaaagcga
     3541 tattttacgc tttcttagta taggtgattt tgccatgtct ccaacttata ttaaagaact
     3601 tggaaatcat ataggtttta gcggcggaaa tgcttatgtt tttgatgtac ctgaaaatga
     3661 gtatttcatg atgggtgata atcgtgatta ttcttatgat agtcgttttt ggggttctgt
     3721 tccttatagg ttgatagtag gtaaaccttg gtttgtatat ttctcttggg ataaagataa
     3781 aaatgttcgc tgggaaagga tagggcgttt tgttgatacc ttggaaaatg atgaacaata
     3841 tatccatgat catgatgatg aggataaatt aagctaatgt ttgtgaaaaa cacaaacatt
     3901 atatttttaa aagcgtgatt tcatcacctt tttttaattc acttgtattt tcttcgctta
     3961 taagtaaaaa ctcactttta ataagtggaa gtatcatacc agatccaaat ttattttcat
     4021 taaatggtgt aaaaatatct ttttctaaat ttcctaaaat gagattgttt cttccacttt
     4081 taagctttaa atccataccc attgtagcat gaaattttaa aggattgtct aggcttccac
     4141 ttaataaagc aataattttt ttagcaaaaa taaaacaaga aagataagct gccataggat
     4201 ttcctggtaa aatcaatacg aaattttcac cttttctata aagcttagta ggtcttgcag
     4261 ggcgtgcttt tagtccttta aaaagcggag taaagcctaa ttcatctaaa gctttttcca
     4321 taaaatcagc ctcgccaacg cttgcacctc ctgaagtgat taaaagatca aaatttgtat
     4381 tttctaaagc ctctttagtg cttttaaaat catctttaat aatacccaaa taagaagcat
     4441 tttgaagcat ggttagtaaa ggcaaagcat tggcattata aatactttct tcatcgcatt
     4501 cttgccaagg ttcttttagc tcatttccac ttgaaaaaat acctatgcga atttttctta
     4561 tgacttctat tttataaagc ccttgagaag caagcagggc gatatgttta tcattaagtt
     4621 tggtgccttt tcgaagtaaa atttcacctt tttttaattc ttcgccttta tagcgatagg
     4681 cattgtattg tttaggggct tttttaatga tgagtttatt ttcttctata tactcatctt
     4741 ctaacattaa gatagtatca gcatttttgg gcattttagc ccctgtcatg attttatagc
     4801 attcattctt agcaactgta taaaaatttt tatctcctgc aaaaatagtc cctttaatct
     4861 ccaaagcctc attgatatca gtataattaa aagcatagcc atcaagagca gcattgtcaa
     4921 aactgggtag attttttcta gcgtataaat ctttagctaa aattctatct tttgcttttt
     4981 caaggctaat aagttcactt tcatctaagc atgaaatttg atcttctaag tcttttaagg
     5041 ttttaaagat atttttcatt cttcaagcct tgtgatttta gcccctaagc ctttaaattt
     5101 ttcttctaaa ttttcataac ctctatcaag atgataaatt ctatggactt tgcttgtgcc
     5161 tttagctgca agagctgcta agataagggc tgaagaagca cgcaaatctg tagccatgac
     5221 atcagcagcg ttaagttctt ttccgcctac tatagtagca atatgaccgt tgagtttgat
     5281 atccgcaccc attcttaaaa gttcacttac atgcatgaaa cgattttcaa atagtctttc
     5341 atcgataata ctagttccat tagcttttaa agctaatgcc ataaactgcg cttgcatatc
     5401 ggttggaaag cctggatatt cgcttgtcat gatttctaca ggtttaattt ctttagcagg
     5461 aagtagggtg atactatctt ctgtaatcaa agtttcaaaa cccatttgat gaagttttgc
     5521 taaaactgca ctaagatgag tggcattaac tttatctaaa gtaattttag aatttgtaat
     5581 agctcccgca caaagataag ttcctgcctc aattctatca ggtataacac taaattcttt
     5641 aaattctaaa agttctccat tgctgccata aatttcaagt tcatctgtgc ctatgccttt
     5701 gatttcaagt cctgcgtctt ttaaaacttc gcaaagttga actacttcag gttcttttgc
     5761 aacatttaag agcttggttt taccttcagc taaagctgct gccatgatga tgttttcact
     5821 acctgtaacc gtgattttat caaaaagaat ttcattgcct tttaaatttc cactagctac
     5881 gacatagcct tgtttgattt gtatgtttgc tcccattttt tccaaggcta aaagatgtaa
     5941 atcaataggt ctttgtccta tagcacatcc accaggcaaa gatacttcac aatgcccaaa
     6001 acgagcaagc aaaggcccta gagtaagtat ggaagcacgc attttgcgca caatgtcata
     6061 tttggctatg gtttgattaa gagtgtttgt gtttaaaaaa gcactattgt tttgaaaatt
     6121 gaccctagct cctaaatttt ctagcaaaga tataagagtt tttatatcag ctacatttgg
     6181 gacattggat atctttactt catttttagc aagtatagta gaagcgatta agggtagggc
     6241 ggcattttta gcgccgctaa tttgaacttc accttctaaa gaatcaacac ctttaatttc
     6301 caaaaaagtc atatttttcc ttaaaaaata aaatgcttta ttatatcatt cttaaacttt
     6361 tggaaaaatt atttattttt gttgattttg aatctcttga atttgcgcct gaatagttgc
     6421 agattgacca atcaatgttg caacttgact ttgcaaactt gcaagttgat ttttatcagc
     6481 attagccatt tttccagtaa gttctgctat ttttgcttgt atttctgcta acttttgcat
     6541 caattctgca agcttatctg tattatcatc ttgagaattc gattcattgg aattttgatt
     6601 atttttagat tgcaattgct tactagattt ttcttttgcc tctttgctaa tagtaacttc
     6661 aacagctgaa tctaactttt gtgtatcttt tgtttctttt tctttttgtg tattatctgt
     6721 atttatttta gtatattgac ttaattcttt tagagtatta tcaattttca tatttatttc
     6781 tccttaactt tgtatatttt ttatatcgtc tcttttttta ttattattta catctattaa
     6841 ctaacaaatt ttcataaaat tacgtagtat ttttttaccc tgttgactta aaatagcctc
     6901 agggtgaaat tgtatgccat aaatactata ttttttatgt ttaattgcca taataatgtc
     6961 ttgagaattt ttggctaaaa ttttacattt tttaggcatt ttgcttatat gtaaagaatg
     7021 atattggcaa atttcaattt cttttttaat acccttaaaa ataggatctt ttttaaaata
     7081 aagtttagaa attttaccat gcataggatt ttgcatttta gaaaccctac cgccgaaaac
     7141 ttcagctatg cactgatgcc ct
//
LOCUS       DAPIWQ010000087         7151 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.087, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000087 DAPIWQ010000000
VERSION     DAPIWQ010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7151)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7151)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7151
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.087"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..212)
                     /locus_tag="RJ267_001231"
     CDS             complement(<1..212)
                     /locus_tag="RJ267_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HDV7389083.1"
                     /translation="MKKIIILTFFVVFAFGDVNRTIINNINEKINTLNTVISASIWNI
                     RYENFIKYQDINDELIILNLNLKKTS"
     gene            complement(209..1264)
                     /locus_tag="RJ267_001232"
     CDS             complement(209..1264)
                     /locus_tag="RJ267_001232"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HDV7389084.1"
                     /translation="MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTL
                     LSKIKAKEIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESFFLK
                     TLSSRELAAGMAEFIKMAAMFDYSILDFIEKIDEKSFLNATCENEIFTQIIAKSIELK
                     SRVVEQDEKESRLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGL
                     LDKMQSQRIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLASPLGKGLI
                     KGDISKEDIIATLREFQ"
     gene            complement(1310..2710)
                     /locus_tag="RJ267_001233"
     CDS             complement(1310..2710)
                     /locus_tag="RJ267_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3400 family protein"
                     /protein_id="HDV7389085.1"
                     /translation="MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNI
                     SSEYIDLHYFDPTSTARLENIMSKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIM
                     DFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKA
                     GQFPMPFGSNVFALIDMKNMNQNMQERVLDTTLKLTQKSNAKRFFIHVINPKLGVMYE
                     KLKKLSEDKEGVFFDYFNTDFKQISMWLQNNDIGLVVTDIKNFEKEKQAFFDLKIPIM
                     KVGEASFDELKEAIILSADESELENNANVITDLSKQLDFGVILYYYNPNSQNTTDMEE
                     YFRSLSKLYDKNIQIINKNDENPLLNLQYREDLLQFVSFQKELLNRDFARNLSTNLNR
                     HYYKMRQNYQLFIPVE"
     gene            2740..3861
                     /gene="tgt"
                     /locus_tag="RJ267_001234"
     CDS             2740..3861
                     /gene="tgt"
                     /locus_tag="RJ267_001234"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HDV7389086.1"
                     /translation="MEFKLKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDAN
                     DMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKN
                     SKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERVKISV
                     DRTILWAKEAITYHKNMQNKGIGIGQNIFGIIQGGTDYEERKRCALSLNEMPFDGLAI
                     GGLSVGEENALMYETVQNLNPYLDENRPRYLMGVGTPEDLVENVERGVDMFDCVMPTR
                     NARNGTFFTSFGKFNIKKAEFINDHEVIDSTCSCYTCRNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK"
     gene            3863..4630
                     /locus_tag="RJ267_001235"
     CDS             3863..4630
                     /locus_tag="RJ267_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HDV7389087.1"
                     /translation="MLELHENLKKILQAKNLETFYSEIYGQKIFVYVGLNLETWLFND
                     EKIYKLQDGEFKLSSIEEFSNFIKSILEDFKVQNTHFQNLLEHKEGIILKGGFVKNFY
                     KKSFVLRQKINKNLKQINLLSEAFNLLLSEQAQYKKHLKILNLSISILSKNTKEHLAR
                     IDTLYTLTNAIKNEKMNKSIYLLSILSSIFLPLNLIVGFFGMNTNNLFFKDSPYGTLY
                     IFSLICCILIVGFIFYYSKKTKEFDLDEGKKAKKQTK"
     gene            4683..4759
                     /locus_tag="RJ267_001236"
     tRNA            4683..4759
                     /locus_tag="RJ267_001236"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4717..4719,aa:Arg,seq:gcg)
     gene            complement(4762..5211)
                     /locus_tag="RJ267_001237"
     CDS             complement(4762..5211)
                     /locus_tag="RJ267_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389088.1"
                     /translation="MVIFCAALALLLFLGVIAYLITSDGKKTIKKQKTSQKQHVAEKT
                     KKFDTDLDKMIIAASDVKLTDIELKELAKLYVQTHKLGSKTSKELDEAAKKKLEFVSA
                     LAANINASAQTVSYLNKELKKIYGSYKKEIDAYEHMGLAKRKIKEDK"
     gene            complement(5227..>7151)
                     /gene="ccsA"
                     /locus_tag="RJ267_001238"
     CDS             complement(5227..>7151)
                     /gene="ccsA"
                     /locus_tag="RJ267_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HDV7389089.1"
                     /translation="DYDGYRFYQSSYDQDEKGTVLSVNKDPGKIPTYIGYFLLCLGMF
                     MNFLNPHSRFRTLARLINKDTLKHTSVIIFILLLSFGSEKTFAQDLNSTLPVVNTNHA
                     KALATLIVQKSADGRMVPFDTLSREILEKIHQSDSYKGQNSNAVMLSMLVDVDKWQLE
                     PFILMPQNQAVRDAIANILEIPSAKYIAYKDFFDENNRYKLQKYVENANRKNPNARGV
                     FDKEIIKLDERANVVNLVFSGELFKFIPVQNNPNNVWLAPFSAVTTLKGDEGHIVLAL
                     IQNYFSAVENAFKDGNWIRADEGLKFIKEYQEKIGYKVMPSKTKVEMEIFSNKAEIFV
                     KLAPVYLIAGFLLLILVFSKMVVPNLKISFIFKVVYVLNVLAFVIHTVGLGLRAYLSG
                     HAPWSNGYESMVYIAWALSLSGIFFSRKSPIALSLTSILSGVVLMVAHLSEMNPQITN
                     LVPVLNSYWLSIHVSVITASYGFLGLCALLGIFTLFLMCFLKKDGKYNLNILRNITEA
                     TRINEMAMIFGLCLLTVGNFLGAIWANESWGRYWSWDSKETWALVSILVYAAILHLRM
                     IPKYCNQFVFALWSMFAYWVIIMTYFGVNYFLTGLHSYAAGEAAQIPNYVYWGFALMV
                     VLAFFARRKRNFVGKL"
BASE COUNT         2590 a         1174 c          898 g         2489 t
ORIGIN      
        1 tcggaagtct tttttaaatt aagatttaaa atgattaatt catcatttat atcttgatat
       61 tttataaaat tttcataacg tatattccaa atactagcac tgattacagt atttaaagta
      121 ttaattttct catttatatt attaataata gtccgattta catcaccaaa agcaaaaaca
      181 acaaaaaagg ttaaaataat aatttttttc attggaattc tcttaaagtt gcaattatat
      241 cttctttaga aatatcacct tttatcaaac ccttacccaa aggactagca agaacaaaat
      301 tgattttttt attagagctt tttttatcca tgaaaaaagc ttcataaaat tcatctacat
      361 tgttgatttt atatgatatt ggcaaaccga atttaagtaa aatatctttt attctttgac
      421 tttgcatttt atccaaaagc cctaaattta aagccaattg atttgccata accataccta
      481 tagccaccgc ttctccgtgt aaataaagct tataatctgt aaaattttct ataacatgag
      541 caaaagtatg accataattt aaaagcattc taagccttga ttctttttca tcttgttcaa
      601 caacccttga tttaagctct atgctttttg ctataatctg agtaaaaatt tcattctcac
      661 aagtagcatt taagaaactt ttttcatcaa ttttttctat aaaatcaagt atactataat
      721 caaacattgc tgccatttta ataaattcag ccatgcctgc agcaagttct ctagagctca
      781 aagtctttaa aaaaaaactc tcacaatata cagctttagg ttgataaaaa gtgccaataa
      841 gatttttacc aaaattatta ttaacacctg tttttccacc tactgctgca tcaacacaag
      901 ctaaaagtgt agtaggaata tttataaaat caatacctct ttgataaata ctagcagcaa
      961 atccgcccat atcactaatc acgccaccac caaaacttat aagtacgctt tttctatcca
     1021 atttagaatt aaacatttgg tttaaaattt cttccatggt gcttaaattt ttatattctt
     1081 caccatcttt cacagtggca ataaaaattt cttttgcctt aattttagaa agtaatgttt
     1141 tcaaatgaag acctgaaatc ttaggatttg aaagtataaa aaccttacta tcaaattcta
     1201 attcttcaag ttcatcaata taaaccttat aagcattttc ttttaactta acttctactt
     1261 gcattgaact actctttttg catttatttt atcacattta attaattatt tattctactg
     1321 gtatgaaaag ttggtaattt tgtctcattt tgtaataatg cctatttaaa tttgtactta
     1381 aatttctggc aaaatctcta tttagtaatt ctttttgaaa actcacaaat tgtaacaaat
     1441 cttcgcgata ttgcaaattt aaaagagggt tttcatcatt tttattaata atttgtatat
     1501 ttttatcata aagcttagat aaacttctaa aatactcctc catatctgta gtattttgag
     1561 aatttggatt ataataatat aaaataactc caaaatcaag ctgtttactt aaatcagtaa
     1621 tgacatttgc attgttttca agttcactct catcagcact taaaataatc gcttctttaa
     1681 gctcatcaaa agaagcttca cccaccttca taataggaat ttttaaatca aaaaaagctt
     1741 gtttttcttt ctcaaaattt tttatatcag ttacaactaa tcctatatca ttattttgca
     1801 accacatgga aatttgttta aaatccgtgt tgaaataatc aaaaaacaca ccttctttat
     1861 cctcagaaag tttttttaat ttttcataca ttacccctaa tttaggattg ataacatgta
     1921 taaaaaatct ttttgcattg cttttttgag ttaattttaa agtagtatca agcactcttt
     1981 cttgcatatt ttgattcata tttttcatat caattaaagc aaaaacatta cttccaaaag
     2041 gcataggaaa ttgccctgct ttgcctctta tattatgaaa aatactttgt aaaacaacag
     2101 gatccccaac gatcaaaatg ctatcatttg gctctagaac aaaagatggt tttacaaaat
     2161 aaattttaga atttctataa ataaggacta tgcgccacct tttttgttgt attgaactta
     2221 tgtgcctata agcaaaaata gaccctgctg gaatttttac ttccataatc tctccaactc
     2281 caagtcctat atactgagct gttaaagcaa tatctggtaa aaaatccata aatctacggc
     2341 ttaaagtcat tctagcatca gctaaatttg catgagtatc attaacactt aacccccaaa
     2401 aatccattat ttctatttct aaatttggat ttaaagaacg caaagcctcg taactttttt
     2461 tagtttcaaa ttcatcttgc atataaataa aagcctgttt aaaatcctta ctcataatat
     2521 tttcaagacg cgctgtgctt gtaggatcaa aataatgcaa gtcaatatac tcgctagaaa
     2581 tatttaagtt atttttttca ctattttgac acactactgt aaaaaagtaa cctaagcctt
     2641 tttcaaaaca aagcctttct aagaaatgct ttgctaaaat accatctatt ataattaaaa
     2701 tattattcat tttaaactcc aaaaaggaaa ttataacaaa tggaatttaa attaaagcat
     2761 aaagatggaa tggcaagggt ttgtgaaatc actaccgcac acagcacttt tttaacccct
     2821 gtttttatgc ctgttggcac agtaggagcg gttaaaagtc ttgatgctaa tgatatgaaa
     2881 aatgagcttg atgcaaaaat tattttagca aatacctatc acatgtactt gcgtccaact
     2941 tccaaagtag taaaagattt tggaggttta catggattta cgaaatttga tagaagtttt
     3001 ttaaccgata gtggtggttt tcaagctttt tctttaagta aaaattccaa acattttaat
     3061 gaaggcatag aatttaaaag tcacattgat ggaagtcgtc atctttttac tccaaaaagt
     3121 gttttagata ctcaatatga ttttaattct gatattatga tgattttaga tgatttagta
     3181 gccctacccg caaccaaaga aagggttaaa atttctgttg atcgcactat actttgggca
     3241 aaagaggcta ttacttatca taaaaatatg caaaataaag gtataggtat agggcaaaat
     3301 atttttggta ttatccaagg tggtacagat tatgaagaaa gaaagcgttg cgctttaagt
     3361 ttaaatgaaa tgccatttga tggtttagct ataggtgggc ttagcgtggg cgaagaaaac
     3421 gccttgatgt acgaaacagt ccaaaactta aacccttatc tagatgaaaa tcgtccaaga
     3481 tatttaatgg gcgtaggaac gcctgaagat ttagtagaaa atgttgagcg aggagtagat
     3541 atgtttgact gtgtgatgcc aactagaaat gcaagaaatg gaacattttt cacaagtttt
     3601 ggaaaattta atatcaaaaa agcagaattt atcaacgatc atgaagttat agattctact
     3661 tgctcatgtt atacttgtcg taatttttca aggggttatt taaaccatct ttttaaagct
     3721 aaagaactta ctttttttcg tttggcaagt ctgcacaatc tacattatta tcttgaactt
     3781 gcaagaaaga tgcgtgaagc aattttgaac aattctttta cgcaatttaa aagaaatttt
     3841 tatcacttaa gaggcaaata aaatgctaga actacacgaa aatctaaaaa aaatcctaca
     3901 agcaaagaat ttagaaactt tttatagtga aatttatgga caaaaaattt ttgtttatgt
     3961 gggattaaat ttggaaactt ggctttttaa cgatgaaaaa atttataaac ttcaagatgg
     4021 agaatttaag ctttctagca tagaagaatt ttcaaatttt attaaatcca ttttagaaga
     4081 ttttaaagta caaaatactc attttcaaaa ccttttagaa cacaaagaag gtattatctt
     4141 aaaaggtggt tttgttaaaa atttttacaa aaaatccttt gtgttaagac aaaaaatcaa
     4201 caaaaatcta aagcaaatta atcttctaag cgaagctttc aatcttttgc ttagtgaaca
     4261 agcacaatat aaaaaacatt taaaaatttt aaatttatcc atcagcatct taagtaaaaa
     4321 caccaaagaa catctagcaa gaattgatac tctttataca ttaacaaatg caattaaaaa
     4381 tgaaaaaatg aataaaagta tttatctttt aagtatactt tcttctattt tcttgccttt
     4441 aaatttgatc gtaggatttt ttggaatgaa tactaataat ctttttttca aagatagccc
     4501 ttatggtaca ctttatattt tttctttgat ttgctgtatt ttgattgtag gttttatatt
     4561 ttattattca aaaaagacta aagaatttga tttagatgaa ggtaaaaaag ctaaaaaaca
     4621 aacaaaataa gcaaaatttt gcttatttta agaatattta tatataattt taacttattt
     4681 ttgcgctcat agctcagctg gatagagcat ttgattgcgg ttcaaaaggc cagaggttcg
     4741 aatcctcttg agcgcaccat attatttatc ttctttaatt tttcttttag ctaatcccat
     4801 atgctcgtaa gcatcaattt cttttttgta agatccataa attttcttaa gttctttatt
     4861 taagtaactt actgtttgtg cacttgcatt aatatttgca gccaaagcag aaacaaattc
     4921 tagtttcttt tttgctgctt catctaattc tttagaagtt tttgaaccaa gtttatgtgt
     4981 ctgcacataa agtttggcaa gttcttttaa ttcaatatcc gttagtttaa catcggaagc
     5041 agcaattatc attttatcta agtctgtatc aaatttttta gtcttttcag ctacatgctg
     5101 cttttggcta gttttttgct ttttaattgt ttttttgcca tcacttgtaa taagataagc
     5161 aatcacgcct aaaaacaata aaagcgctaa agcagcacaa aaaataacca aaaaaatatg
     5221 gttcatttaa agtttgccca caaaatttcg cttccttctt gcaaaaaaag ctaaaaccac
     5281 catcaatgca aatccccaat aaacataatt aggaatttga gccgcttcgc ctgcagcgta
     5341 agaatgaagt cctgttaaaa agtaatttac tccaaaataa gtcataataa taacccaata
     5401 agcaaacata ctccataaag caaacacaaa ttgattacaa tattttggaa tcattctaag
     5461 atgcaaaatt gctgcataaa ccaaaatgct aactaaagcc caagtttcct tagaatccca
     5521 actccaatat ctcccccaac tttcatttgc ccaaattgct cctaaaaaat ttcctacagt
     5581 aagcaaacaa agtccaaaaa tcattgccat ttcattaatt cttgtagcct ctgtaatatt
     5641 tctcaaaata ttaagattat attttccatc tttcttaaga aaacacatta agaacaatgt
     5701 aaagatacca agtaaggcac aaagtcctaa aaatccataa ctagcagtaa taacagatac
     5761 atgaatacta agccaataag aattaagcac aggaacaaga tttgtaattt gcggattcat
     5821 ttcgcttaaa tgcgcaacca ttaatacaac accagataaa atagaagtta atgacaaggc
     5881 tataggactt tttctggaga aaaatatacc cgacaaagac aatgcccaag ctatatacac
     5941 catactttca tagccattac tccatggagc atgacctgat aaataagcac gaagtccaag
     6001 acctactgta tgaattacaa aagctaaaac atttaaaaca tataccactt taaatataaa
     6061 agagattttt aaattcggta cgaccatttt agaaaaaaca agaatcaaga gtaaaaaacc
     6121 cgcaattaaa tatacaggag cgagtttaac gaaaatttca gccttattag aaaaaatttc
     6181 catttcaacc ttggttttac taggcatgac tttatatcct attttttctt gatattcttt
     6241 gataaatttc aagccttcat cagctctaat ccaattacca tctttaaaag cattttccac
     6301 ggcactaaaa taattctgta ttaaagccaa aacaatatgc ccttcatccc ccttaagagt
     6361 agttacagca gaaaaaggtg caagccaaac attatttgga ttattttgaa caggaataaa
     6421 tttaaataat tcaccactaa aaactaaatt tacaacatta gctctttcat ctagttttat
     6481 aatttcctta tcaaaaactc ctcttgcatt tgggttttta cgatttgcat tttcaacata
     6541 tttttgaagt ttatagcggt tattctcatc aaaaaaatct ttataagcaa tatatttagc
     6601 actaggaatt tctaaaatat ttgcaatagc atcacgaact gcttgatttt gtggcattaa
     6661 aataaaaggt tccaattgcc atttatctac atcaacgagc atggaaagca taacagcgtt
     6721 agaattttga cccttatagc tatcactttg atgaattttt tctaaaattt ctcttgatag
     6781 cgtatcaaaa ggcaccattc ttccatctgc tgatttttga actattaaag tggcaagagc
     6841 tttagcatga ttagtattta ccacaggtaa ggtcgaattt aaatcttgag caaaagtctt
     6901 ttcagaacca aaagataaca ataaaataaa aataatcaca cttgtatgtt ttaaagtgtc
     6961 tttattaatt aatcttgcca aagttctaaa tctagaatgt ggatttaaaa aattcataaa
     7021 cattccaaga caaagcagaa aataacctat ataagttggt attttgcccg gatctttatt
     7081 tacagataaa acagtccctt tttcatcttg atcataagaa ctttgataaa atctatagcc
     7141 atcataatct a
//
LOCUS       DAPIWQ010000088         7149 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.088, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000088 DAPIWQ010000000
VERSION     DAPIWQ010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7149)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7149)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7149
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.088"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..951)
                     /locus_tag="RJ267_001239"
     CDS             complement(<1..951)
                     /locus_tag="RJ267_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HDV7389090.1"
                     /translation="MHFYIHIPFCESKCNYCAFTSLKKNDYEKAYFKALKEDIVFQLK
                     QFNIQSNQIKTLFIGGGTPSCVNAYNYEDIFKILYPLLDKNVEISCEANPNSATLNWL
                     KNMKNLGVNRISFGVQSFHPKKLHFLGRIHNQEMIIKTLENANKVGFKNINLDLIYDT
                     KLDNKKMLEFELLHLKQIKDLITHLSAYNLTIESNTAFAKKEHFKKNAPNLMKFFIKQ
                     LLELDFFQYEISNFSKTKAQICKHNLAYWQGKNYLACGLSAVGFYENKRFYTAKNLKN
                     YIENPTFRSIEQLSSKDLNLEHLFLGLRSIVGIDETKLNQW"
     gene            1053..1523
                     /locus_tag="RJ267_001240"
     CDS             1053..1523
                     /locus_tag="RJ267_001240"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HDV7389091.1"
                     /translation="MENEKNYRPNVAAIVLSSSYPFECKIFIARRSDMDNIWQFPQGG
                     IDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMYPYDGQIQKYFL
                     VRLKHGATININTKHPEFDDYQFVSVKQIFEMINHFKKNIYVRVIKYFEEKGYI"
     gene            1525..2727
                     /locus_tag="RJ267_001241"
     CDS             1525..2727
                     /locus_tag="RJ267_001241"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HDV7389092.1"
                     /translation="MLIVQKYGGTSVGTLERIEAVANRVIQSAQQGNQLVVVVSAMSG
                     VTNTLIEQAEYFSKTPNGKDMDMLLSSGERVTSALLSIALNEKGCPAISFSGRKAGII
                     TDSVFTKARIHHIDTKAIKSELQNGKIVVIAGFQGVDEEGNVTTLGRGGSDLSAVAVA
                     GALNADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVNLVTRSSFNNNEGTMITKEDGMEQALVSGIALDKNQARVTLRNIEDKPGIAAE
                     IFSVLANENINVDMIIQNVGVDGATNLGFTVPQNELELAKNAMQKILSSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            2728..3264
                     /locus_tag="RJ267_001242"
     CDS             2728..3264
                     /locus_tag="RJ267_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HDV7389093.1"
                     /translation="MSDFLSFTLENIRNGGAFMAWLESRRLEWAPLMAARLKYLLEGR
                     TFVLMCDEQRSWYEEYFLKNINSKATRPMLPFVSLNSLCKKKVQSSEDIALLNDLLDI
                     SFPNGYVYFYIGSASDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLY
                     QLFDVSLDAILFSKVQLG"
     gene            3270..3869
                     /locus_tag="RJ267_001243"
     CDS             3270..3869
                     /locus_tag="RJ267_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HDV7389094.1"
                     /translation="MFISKIIISEDFLGIKEEMINNFGIKKLRFFIPQNEFLLDDARA
                     VEKESYIAETEEKIIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVIPSKNLLLPTIK
                     SRLICEKRKVEKEVKKLDLDLKRMDLRMLFDFLQKNENLDKNELMDQIALLAKECVKY
                     KDFNAEELEFFYESYELAKLNSKSGVLLATLLLNYYTKK"
     gene            3871..5013
                     /gene="folP"
                     /locus_tag="RJ267_001244"
     CDS             3871..5013
                     /gene="folP"
                     /locus_tag="RJ267_001244"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HDV7389095.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTKIHFIFIKDIS
                     TPAANILKQDALRVGAELITHKEVITAKITHSNALLMASKEQIQKLVVKEKLQDFGLK
                     NLALFLQKDFLKPKKAELMAVINVNEDSFNAKSRVSEEDFEKRLNDFLALKPEYIDIG
                     AVSSRPGSEYCGKEEEFKRLKKVLDLIYEKNYYEQAIFSLDSFDEYCLEYALNKGFKL
                     INDITSLRNLNLAKLASKYGAKYCLMHMQNNPNNMQDNPFYEDLLDEMTLFFKEKLEL
                     LESFGVKESILDVGIGFGKSAGHNMILIKHLEHFLQFNKPLLIGASRKSVINAYFQSE
                     IKDRLAGTLYLHLKAFENGASIIRVHDLYEHKQLFALAQAMDNIGV"
     gene            5014..6957
                     /gene="ligA"
                     /locus_tag="RJ267_001245"
     CDS             5014..6957
                     /gene="ligA"
                     /locus_tag="RJ267_001245"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HDV7389096.1"
                     /translation="MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFE
                     EQNKDEISKDSPTQKIAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGE
                     NTLNFTKHSEVMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVV
                     RVDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVVVKSATLHNFDEIARLDVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRP
                     KLCPTCQSELLDEGTLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK
                     KITTLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVA
                     AKKLSLSFGKEWYKQSFEAYANLEGFGEQMALSLCEFTRVNRTRIDEFYKLLNLKIEK
                     LEIKSDGVIFGKTFVITGTLSRPRDEFKALIEKLGGKVSGSVSKKTDYVLFGEEAGSK
                     LSKAKELEVKCIDESAFNELVKE"
     gene            6938..>7149
                     /locus_tag="RJ267_001246"
     CDS             6938..>7149
                     /locus_tag="RJ267_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389097.1"
                     /translation="MSLLKNSSYILTLLSLFGFLLTWQRSAFSLFFLISIFLTLFWEF
                     FLFLKLRKNIIKEATLIKGSLFYRVS"
BASE COUNT         2529 a          831 c         1373 g         2416 t
ORIGIN      
        1 ccattgattg agttttgttt catcaatccc tactatactt ctaagtccta aaaataggtg
       61 ctctaaattc aagtctttgg aacttagttg ctctatagat ctaaaagtag gattttctat
      121 gtaatttttt aaattttttg ctgtataaaa acgcttattt tcataaaatc ctactgcact
      181 taatccacaa gctaggtagt tttttccttg ccaataagca agattatgtt tgcaaatttg
      241 ggctttggtt tttgaaaaat tactgatttc atattgaaaa aagtcaagct ctagaagttg
      301 tttgatgaaa aatttcatta aattaggagc attttttttg aaatgttctt ttttagcaaa
      361 ggctgtgttt gattctatgg ttaaattata agcactaagg tgtgtgatta aatccttgat
      421 ttgttttaag tgtaagagtt caaattcaag cattttttta ttgtctaatt tcgtatcata
      481 aataagatct aaattgatat ttttaaaacc tactttattt gcgttttcta atgttttgat
      541 aatcatttct tgattgtgaa ttcttccaag aaagtgaagt tttttaggat gaaaactttg
      601 aactccaaaa gaaatgcgat taactcctag atttttcata tttttaagcc aatttaatgt
      661 tgctgagttg ggattagctt cgcatgaaat ttctacattt ttatctagta agggatataa
      721 aattttaaaa atatcttcat aattatacgc attaacacaa cttggtgttc ctccgcctat
      781 gaataaggtt ttaatttgat ttgattgaat gttaaattgt tttaattgaa aaacaatatc
      841 ttcttttaaa gccttaaaat aggctttttc ataatcattt tttttcaaac ttgtaaaagc
      901 gcaataatta catttgcttt cacaaaatgg aatatggata taaaaatgca taaaaaccct
      961 aaaatatttt attaaatttt ttaatgtatt ttaataaaaa tttgatttga tttaggttaa
     1021 aattatatcc ttgagattta aggaacaata ttgtggaaaa cgagaaaaat tatagaccaa
     1081 atgttgcagc tattgtttta tcaagttctt atccttttga gtgtaagatt tttatagcta
     1141 gaagaagtga tatggataat atttggcaat ttccacaagg aggtattgat aaaggtgaaa
     1201 gtgtcaaaaa cgctttattt agagaactaa aagaagaaat aggcactgat gaggttgaaa
     1261 tcattgctga gtatccagaa tggttgagtt atgattttcc gagtaaaatt gttaaaaaaa
     1321 tgtatcctta tgatgggcag attcaaaaat attttttagt gcgtttaaag cacggtgcta
     1381 caatcaatat caatactaag catcctgaat ttgatgatta tcaatttgtg agtgttaaac
     1441 aaatttttga aatgattaat catttcaaaa aaaatattta tgttagagtg atcaaatatt
     1501 ttgaagagaa aggttatatc taaaatgctt atagttcaaa aatatggtgg aacaagcgtt
     1561 ggaacacttg agcgtatcga agcagtagcc aatagggtta tccaaagtgc gcaacagggt
     1621 aatcaacttg ttgttgtagt atctgcaatg agtggggtga caaatactct tatcgagcaa
     1681 gctgaatatt ttagtaaaac tcctaatggt aaagatatgg atatgctttt aagcagcgga
     1741 gagcgtgtaa caagcgcttt actttctatt gctttaaatg aaaagggttg tcccgctata
     1801 tcgttttctg ggagaaaagc aggaattatt acagatagtg tttttacaaa ggcaagaatt
     1861 catcatattg atacaaaagc gataaaatca gaacttcaaa atggtaaaat agttgttata
     1921 gcaggttttc aaggtgtaga tgaggaaggt aatgtaacta ccttagggcg tggtggaagc
     1981 gacttaagtg ctgtggcggt ggcaggtgcc ttaaatgcgg atttgtgtga aatttatacc
     2041 gatgttgatg gggtttatac aacagatcca agaattgaac caaaggcaaa gaaattggat
     2101 aaaatttctt atgaagaaat gcttgaactt gcaagtttag gtgcaaaagt tttgcaaaat
     2161 cgctctgtag aacttgcaaa aaaattaaat gttaatttag taactagaag tagttttaac
     2221 aataacgaag gaacaatgat aacaaaggaa gatggaatgg aacaagcttt agtaagtggt
     2281 attgctttgg ataaaaatca agcaagagtg actttaagaa atatagaaga taagcctgga
     2341 atcgcagctg aaattttttc tgttttagca aatgaaaata ttaatgtaga tatgattata
     2401 caaaatgttg gagttgatgg tgctacaaat ttgggtttta cggttcctca aaatgaactt
     2461 gaattagcca aaaatgctat gcaaaaaatt ttaagctcaa aaacaactat agaaagtgat
     2521 agtgctgtag taaaagtttc tatagtcggc gtaggtatga aatcacattc aggagtggca
     2581 agtaaagctt ttaaagcttt agctgatgag gggattaata tcggtatgat ttctactagt
     2641 gaaataaaaa tttcaatgat agttcatgaa aaatacggag aacttgcagt tagagcacta
     2701 catgagtgct acggacttga taaataaatg agtgattttt taagttttac tcttgaaaat
     2761 attcgcaatg gcggagcttt tatggcatgg ttggagtcgc gtcgtttaga atgggctcct
     2821 ttgatggctg caagacttaa atatctttta gaaggacgca cttttgtatt aatgtgtgat
     2881 gaacaaagat cttggtatga agagtatttt ttaaaaaata taaattcaaa agccactcgt
     2941 cccatgctcc cttttgtgtc gttaaattct ttatgtaaga agaaagtaca aagttcagaa
     3001 gatatagctt tacttaatga cttgcttgac atttcttttc ctaatggtta tgtatatttt
     3061 tatataggaa gtgcttctga taataaatct ttaatcgcta aatcaagaga tgatagttta
     3121 ttgtggcttt ttgatgagca gttacaagat agtttttatt taaattctaa agataaagac
     3181 ttggatatca agcttattag tttatatcaa ctttttgatg taagtttgga tgcaatatta
     3241 ttttccaagg tgcaattagg ataaatattt tgtttattag taagattatt atcagtgaag
     3301 attttttagg tattaaggaa gaaatgatta ataattttgg tattaaaaaa ttaagatttt
     3361 ttataccaca aaatgaattt ttacttgatg atgcaagagc ggttgaaaaa gaaagctata
     3421 tcgcagaaac tgaagaaaaa attattgttt taatggcgga ttcttatagg atagaagcgc
     3481 aaaatttttt acttaaactc cttgaagaac ctccaaaaaa tattaaattt cttattgtga
     3541 taccttctaa aaatttactt ttacctacta taaaatcacg tcttatttgt gaaaaaagaa
     3601 aagttgaaaa ggaagttaaa aaacttgatt tagatcttaa aagaatggat ttaagaatgc
     3661 tttttgattt tttgcaaaaa aatgaaaatt tggataaaaa tgaacttatg gatcaaatcg
     3721 cattgcttgc taaagaatgt gtgaaatata aagattttaa cgctgaagaa ttagagtttt
     3781 tttatgaaag ttatgagctt gcaaaattaa attctaaaag cggggtgctt ttagctactc
     3841 ttttattaaa ttactataca aagaaataaa atgaaatttt ttaaaatcaa tccaaacacc
     3901 gattttaatt tgctttgttc tttcataaac cctcataaaa tgggacaaaa gatcatgagt
     3961 gaaaaaacaa aaattcattt tatttttatc aaagatattt ctactcctgc ggcaaatatt
     4021 ttaaaacaag atgctttaag agtaggagct gaacttatta ctcataaaga agtaattact
     4081 gcaaaaatca ctcattcaaa tgcgctttta atggcaagta aagagcaaat tcaaaagctt
     4141 gttgtcaaag aaaaacttca agattttgga cttaaaaatt tggctctttt tttgcaaaaa
     4201 gattttttaa aaccgaaaaa agccgagctt atggcagtga ttaatgtcaa tgaagacagt
     4261 tttaatgcaa aaagtcgtgt gagtgaagaa gactttgaaa aaaggcttaa tgactttctt
     4321 gctttaaagc ctgaatatat cgatataggt gcggtaagct caagacctgg gagtgagtat
     4381 tgtggcaagg aagaggaatt taaaagactg aaaaaagtac ttgacttaat ttatgagaaa
     4441 aattattacg aacaagcaat ttttagttta gatagttttg atgaatattg tctagaatat
     4501 gctttaaata agggttttaa actcattaat gatattacaa gtttaagaaa tcttaatcta
     4561 gccaaacttg caagtaaata tggggcaaaa tattgcttaa tgcacatgca aaacaatcca
     4621 aataacatgc aagataatcc tttttatgaa gatttgcttg atgagatgac tttgtttttt
     4681 aaagaaaaac ttgagctttt agaaagtttt ggagtaaaag aaagtatttt agatgtaggt
     4741 attggttttg gaaagagtgc ggggcataat atgattttaa tcaaacactt agaacatttt
     4801 ttgcaattta ataaaccttt acttataggt gcgagtcgta aaagtgtgat taatgcgtat
     4861 tttcaaagcg agattaaaga tcgtttagcg ggaactttat atttgcattt aaaggctttt
     4921 gaaaatggtg ctagtattat aagagtgcat gatttatatg agcataaaca actttttgct
     4981 ttagcgcagg caatggataa tataggagtt tagatgaaaa aagaagagta tttagaaaaa
     5041 gttgctttag ctaatttgtg gatgagggca tattatgaaa aagatgaacc cttggctagc
     5101 gatgaagaat acgatgcttt aatcagagaa ttaagagttt ttgaagaaca aaataaagat
     5161 gaaatttcaa aagactctcc aacgcaaaaa atagctccta ctatacaaag tgagtttaaa
     5221 aaaatagctc atttaaagcg tatgtggtcg atggaagatg tgtttgatga gagtgagctt
     5281 agagcttggg caaaacgcgc aaaatgtgaa aaaaactttt ttatagagcc taaatttgat
     5341 ggagcgagtt taaatttgct ttatgaaaat ggtaaattag taagcggcgc cactaggggc
     5401 gatggcgaag tgggtgagga tataacgctt aatgtttttg agatagaaaa tatacctaaa
     5461 aatatagcct ataaagaaag gatagaaatt cgtggagaag tggtgatttt aaaagatgat
     5521 tttgagaaaa tcaacgaaaa aagagccctt ttaaatcaaa gtttatttgc caatccacgc
     5581 aatgctgcaa gtgggagttt aaggcagctt gatacaagca tcactaaaga aagaaatttg
     5641 aaattttatc cttggggagt aggggaaaat accttaaatt tcaccaaaca cagcgaggtg
     5701 atgcaattta tcagagagct tggtttttta aaggatgatt ttgtaagact ttgcgctaat
     5761 ttagacgaag ttttgaaagc ttatgatgag cttttagctc taagagaaaa aaaacctatg
     5821 atgatggatg gaatggtggt aagagttgat gatcttgcac tttgtgaaga attaggctat
     5881 acggtaaaat ttccaaaatt tatggcagct tttaaatttc ctgcgcttga aaaaaccacg
     5941 cgtttaatag gggtaaattt acaagtagga agaagtggag tgatcactcc tgtggcagtt
     6001 ttagaacctg taaatttaga tggggttgta gtaaaatcag ccacccttca taattttgat
     6061 gaaattgcaa gacttgatgt taaaatcaat gattttgtaa gcgtgataag aagtggcgat
     6121 gttatcccta aaatcactaa ggtttttaaa gagcgtagag aaggtttaga gatggaaatt
     6181 tcacgcccta agctttgtcc tacttgccaa agtgagcttt tggatgaagg aactttaata
     6241 aaatgtcaaa atatagattg tgaagataga cttgtaaatt ctatcattca ttttgtttct
     6301 aaaaaatgtc ttaatatcga cggactggga gaaaatatag tagaactttt atacaagcac
     6361 aaaaaaatca ctacgcttga gagtattttt catttaaaat ttaatgattt tgaaggtttg
     6421 gaaggcttta aagaaaagaa aattaacaat cttttaaatg ccatagaaca agcaagagaa
     6481 tgtgagcttt ttcgttttat cacagcttta ggaatagagc atattggcga ggttgcggct
     6541 aaaaaattaa gtttaagttt tggtaaagag tggtacaagc aaagctttga agcttatgcc
     6601 aatttagaag gttttggaga gcaaatggct ttaagtcttt gcgaatttac gcgtgttaat
     6661 cgcacaagaa ttgatgagtt ttacaagctt ttaaatttga aaatagaaaa acttgaaatc
     6721 aaaagcgatg gtgtgatttt tggtaaaact tttgtgatta caggcactct ttcacgccca
     6781 agagatgagt ttaaggcttt gatagaaaag cttgggggta aggtaagcgg ctcggtttct
     6841 aaaaagactg actatgtgct ttttggagaa gaggcaggtt ctaagcttag taaggctaaa
     6901 gagcttgaag taaaatgtat agatgaaagt gcttttaatg agcttgttaa agaatagttc
     6961 ttatatttta acgcttttaa gcctttttgg ctttttgcta acttggcaaa ggagtgcttt
     7021 ttctttattt tttttaattt ctattttttt aacacttttt tgggaattct ttttattttt
     7081 aaagcttaga aaaaatatta taaaagaagc tactttgatt aagggaagtt tgttttatcg
     7141 tgttagtat
//
LOCUS       DAPIWQ010000089         7060 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.089, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000089 DAPIWQ010000000
VERSION     DAPIWQ010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7060)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7060)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7060
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.089"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..524
                     /locus_tag="RJ267_001247"
     CDS             <1..524
                     /locus_tag="RJ267_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389098.1"
                     /translation="LSAVSFKEDSLKISFEGYKTKDMIGTKGEFKNVEYKFSKNIKDL
                     ASYLKGAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDTDIKVVFQDVIAGENKGV
                     ISAKITMDKKSTIVPLTYTIKDNKFEAKGQLDLHTFKNGSKALKALSDVAAGHGGISW
                     PLVDISFNADLAE"
     gene            complement(540..1106)
                     /gene="rsmG"
                     /locus_tag="RJ267_001248"
     CDS             complement(540..1106)
                     /gene="rsmG"
                     /locus_tag="RJ267_001248"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HDV7389099.1"
                     /translation="MIFKDYDFLQNYDLKNFEEKVKIYKELLSKFNRIHNLTHLKNID
                     ENIFDSIKILDFYDFSKAKNIADIGSGAGFPVVFLAFLLQSNFHLFEPNPKKAAFLRT
                     LKIECELPNLHIYKEKVQEYKNTFKADIITSRALMDVKPLLEICKNLKDENTVFILWK
                     GSEIYQELENIKDYEIFENNLRRYCILK"
     gene            complement(1107..1667)
                     /gene="ribA"
                     /locus_tag="RJ267_001249"
     CDS             complement(1107..1667)
                     /gene="ribA"
                     /locus_tag="RJ267_001249"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HDV7389100.1"
                     /translation="MEIKISEIANLPSKWGNFQMQSFKENDKEHLCIFKNTPKDTLNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKNGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYEISKVNLLTNNPEKLDSIKEKIITR
                     IPILIEPNRFNVEYLNIKQTQMGHLK"
     gene            1725..2708
                     /gene="hemB"
                     /locus_tag="RJ267_001250"
     CDS             1725..2708
                     /gene="hemB"
                     /locus_tag="RJ267_001250"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HDV7389101.1"
                     /translation="MFKRFRRLRLNENLRSMVRENSLSVNDLIYPLFVVNGTGIKKEI
                     SSMPDVFQMSLDEILKECQNVVNLGIKAIILFGVLENEKKDSCGSDALDDEGLVARSI
                     REIKKNFPDLFIISDLCFCEYTDHGHCGIIDPKIKSVDNDATLEISAKQALVHARAGV
                     DMIAPSGMMDGVITTLRKALDKEGFENLPIMAYSTKFASSYYGPFRDVAESAPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPALAYLDVVKEISLHSNLPLCIYNVSG
                     EYAMLKAAKNAGVIDYEKVLYETIIAFKRAGAKLIITYHAKELAKMLKGEK"
     gene            2705..3625
                     /gene="argF"
                     /locus_tag="RJ267_001251"
     CDS             2705..3625
                     /gene="argF"
                     /locus_tag="RJ267_001251"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDV7389102.1"
                     /translation="MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHE
                     TLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNMCNS
                     WLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVI
                     TDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEK
                     HADVIFEEARNRLYVVKALLCFLDNQRGRE"
     gene            3622..4113
                     /locus_tag="RJ267_001252"
     CDS             3622..4113
                     /locus_tag="RJ267_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HDV7389103.1"
                     /translation="MKELEKYSTCLKRIDEFSQNLGIKKKDRTIFKMKQSENENEKCL
                     VLENGSFDSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIYQQI
                     PVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQN
                     ERL"
     gene            4100..5455
                     /gene="hemN"
                     /locus_tag="RJ267_001253"
     CDS             4100..5455
                     /gene="hemN"
                     /locus_tag="RJ267_001253"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HDV7389104.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNANFKYEEYIEILKKQDR
                     SLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILSTILDTKREVVQM
                     HFGGGTPTFFSAKQLQSLILKIRSVFGNFSKDAEISCEIDPRFLNEEQAIVLTQNGFN
                     RISFGVQDFDEKVQKEIHRIQSFELTQNALNLVRNKGIKSVNMDLIYGLPYQNLQSFT
                     QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCEKFLSKNG
                     YKMIGMDHFAKENDELFKALENGTLHRNFQGYTTKGGADLVGVGLTSIGEGQRHYAQN
                     FKDMSSYEAALDRGVLPFERGVILSDDDELRKAVIMELMANFKLDIKSIEKEFSIDFK
                     EYFKEDLKALEEYKDFVNFDENFIKVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            5457..6722
                     /locus_tag="RJ267_001254"
     CDS             5457..6722
                     /locus_tag="RJ267_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDV7389105.1"
                     /translation="MKFSQISDACVKCGKCIPVCTIHEENRDEITSPRGFLDLLTAYK
                     EGSLELDKEAKKVFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKLIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQNENENTGMKARFSMPFVKKGRLLTSFNKKSF
                     LNSNPKFINNDGEKTIGFFVGCLANYFYIDTANAVLKITKELKINVDLMKEQVCCGAP
                     QFFTGDFKSVEVLAKKNIEYFEKKLEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDW
                     AKRAKCVSSKIYMASEYFYKFTSLEEILKTKNKFNYSITYHDPCHARKMQGVFKEPRE
                     LLKTNYHFVEMSNSNTCCGFGGVSMQTDYYDRALSVGLKKAQMIDESKASVVSAECSA
                     CRMQISNALEQNSSKVVFASPLELIAKAL"
     gene            6719..>7060
                     /locus_tag="RJ267_001255"
     CDS             6719..>7060
                     /locus_tag="RJ267_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389106.1"
                     /translation="MMMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSN
                     VDLLEFSDDSFTFEEIVKHFNICDTEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEK
                     IIHENTKQTSMQ"
BASE COUNT         2528 a          846 c         1321 g         2365 t
ORIGIN      
        1 ctttaagtgc tgtatctttt aaagaagata gtttaaagat ttcttttgaa ggatataaaa
       61 ctaaagatat gataggaaca aaaggtgaat ttaaaaatgt agaatataaa ttttctaaaa
      121 atataaagga tttggcaagt tatcttaaag gcgctaaagc taccataaag ccaagcaatg
      181 cttttatggg tgaaggcaat gatattataa ccaataatat cacaaaagta tttttccctg
      241 ctttattggg agatacggat attaaagttg tttttcaaga tgtgattgcg ggtgaaaata
      301 aaggcgttat ttcagcaaaa attactatgg ataaaaaaag tactattgta cctttaactt
      361 ataccatcaa agataataaa tttgaagcta aaggacaact tgatttgcat acttttaaaa
      421 atggttctaa agcattaaaa gcattaagcg atgttgctgc aggacatggt ggaatttctt
      481 ggcctttagt ggatatcagt tttaatgctg atttagcaga ataaaaagta gccttagggc
      541 tactttaaaa tacaatatct tcttaaatta ttttcaaaaa tttcataatc ttttatattt
      601 tcaagttctt gataaatttc actacctttc cataaaataa aaactgtatt ttcatctttt
      661 agatttttac aaatttcaag caaaggcttg acatccatta aggctcttga agtgatgata
      721 tcagctttaa aggtattctt gtattcttga actttttctt tgtaaatatg taaatttgga
      781 agttcacatt ctatttttaa tgtccgcaaa aaggcagctt ttttgggatt gggttcgaaa
      841 agatgaaaat tgctttgcag taaaaaagct aaaaatacaa ctggaaatcc tgcgccactt
      901 cctatatcgg caatattttt tgctttagaa aaatcataaa aatctaaaat tttaatacta
      961 tcaaagatat tttcatctat attttttaaa tgagtaagat tgtgaatgcg gttaaattta
     1021 gataataatt ctttataaat ttttaccttt tcttcaaagt tttttaaatc gtagttttgc
     1081 aaaaaatcat aatctttaaa aatcatttat ttaagatgtc ccatttgagt ttgttttatg
     1141 tttaaatact ctacattaaa acgattaggt tctattaaaa tcggtatgcg tgtgatgatt
     1201 ttttctttga tagaatctag cttttcaggg ttatttgtga gtaaattaac cttagaaatt
     1261 tcatagtgtt tgagtataaa ttctacaatt tcataagttc tctcatcggc tttaaagcca
     1321 agctgatgat ttgctttaat cgtatcaaaa cctttatctt gtaaagcata agcattaacc
     1381 ttgttaaaaa gccctatacc ccttccttct tgtctaagat aaatcaccat tccgccattc
     1441 ttttctatat attttagcga aaattcaagt tgttctccgc agtcgcattt taaacttcct
     1501 aaagcatctc ctgttaagca ctctgaatga attcttagat tgagtgtatc ttttggagtg
     1561 tttttaaata tgcataaatg ttctttatcg ttttctttga aactttgcat ttggaaattt
     1621 ccccatttgc taggtaaatt cgcaatttct gaaattttta tttccattta ctactctcta
     1681 taatcaaatt tatgttaaga ttttagcaaa aaaaggacaa aaaaatgttt aaaagattta
     1741 gaagattaag gcttaatgaa aacttaagat ctatggtaag ggaaaattct ttaagtgtaa
     1801 atgatttgat ttatccgctt tttgtggtta atggaacggg gataaaaaaa gaaatttctt
     1861 ctatgcctga tgtgtttcaa atgagtttag atgaaatttt aaaagagtgt caaaatgtag
     1921 ttaatttagg cattaaagcc attatacttt ttggtgtttt agaaaatgag aaaaaagaca
     1981 gttgtggaag cgatgcttta gatgatgaag ggcttgttgc aagaagtata agagagatta
     2041 agaaaaattt tccagatctt tttataatca gtgatctttg tttttgcgaa tacacagatc
     2101 acgggcattg tgggattatc gatccaaaaa taaaaagcgt agataatgat gcaactttag
     2161 aaatttcagc caagcaagcc ttagttcatg caagagcagg ggtagatatg atagcaccta
     2221 gtggaatgat ggatggtgtt atcactactt tgcgcaaagc tttagataag gaaggttttg
     2281 aaaatttgcc tataatggcg tattctacta aatttgcatc aagttattat gggccatttc
     2341 gagatgtagc agagtcagct ccaagttatg gagatagaaa aagctatcaa atggattttg
     2401 ctaatggtaa agaagcttta gaagaaagct tagaggatga agcacaagga gctgatattt
     2461 taatggtaaa acctgctctt gcttatcttg atgtggttaa agaaatatcc cttcattcta
     2521 acttgccttt gtgtatttat aatgtaagcg gagagtatgc tatgttaaag gcagctaaaa
     2581 atgcaggagt gattgattat gaaaaagttt tgtatgaaac tataatagct tttaaaagag
     2641 caggggcaaa gcttatcatc acttatcatg ctaaagaatt agctaaaatg ttaaaaggag
     2701 aaaaatgaaa cattttttaa ctttaagaga tttttctaag gaggaaattt taagccttgt
     2761 aaatcatgct agcgagctta aaaaagagcc taaaaaactt ttacaagata aaactttagc
     2821 aatgattttt gagaaaaact ctacaagaac aagaatggca tttgaattag ccataacaga
     2881 gcttggcgga aaggctttgt ttttaagcag caatgattta caacttagtc gtggtgagcc
     2941 tgtaaaggat acagctaggg tgataggggc gatggttgat tttgtgatga tgagggtcaa
     3001 taaacatgaa actttactcg aatttgcaag atattctaaa gctcctgtga tcaatgcttt
     3061 aagcgagctt tatcatccta ctcaggtttt aggggatttg tttactatca aagaatggaa
     3121 taaaatgcaa aatggtatag caaaagttgc ttttatcgga gatagtaata atatgtgcaa
     3181 ttcttggctt attacggctg cgattttggg ctttgaaatt agtatagcta tgccaaaaaa
     3241 ctataaaatt agccctgaaa tttgggaatt tgctatgaaa caggctttga tttcaggagc
     3301 taaaatttcc ttaggctatg ataaatttga agccttaaag gataaagatg tagtcattac
     3361 cgatacttgg gtttccatgg gcgaagagaa tgaaaaagaa cgcaagatta aagaatttga
     3421 aggatttatg atcgatgaaa aggctatgag cgttgccaat aaagacgcga tattgcttca
     3481 ttgtttgcct gcttataggg gttatgaagt gagtgaagaa atttttgaaa aacatgcaga
     3541 tgtgattttt gaagaagcaa gaaatcgcct ttatgtggta aaagccttgc tttgcttttt
     3601 ggataatcag agaggaagag aatgaaagag ctagaaaagt atagcacttg cttaaaacgc
     3661 attgatgaat ttagtcaaaa tctaggaata aagaaaaaag atagaacgat ttttaaaatg
     3721 aagcaaagcg agaatgaaaa cgaaaaatgt ttagttcttg aaaatggaag ttttgattct
     3781 cctgagcctt ggtttgtgat cgatgaaaac gatgaaattc acactttgct ttctttacaa
     3841 agtcttaaga atatacttga aagtttaaaa caaagtcaaa aagagaattt tgaattgcgt
     3901 ttagaaaagg cgatttatca acaaattcct gtagatttta acgatgtttg gacggttgct
     3961 atggatgaga tcaagcaaaa ggcgcaaaat ggtaccatgg aagttagtat tgatcttgaa
     4021 aaattaattt ctaaaatcaa acaagagcat ccaaatttat ttgtagatat gcaagcgatg
     4081 atagaaaggg taaaccaaaa tgagagatta taaagctttt gtaaaatact ctaaagcagg
     4141 accacgctac acttcttatc ctacagcagt agagtttaat gcaaatttca aatacgaaga
     4201 atatatagaa attttaaaaa aacaagatag atctttatcg ctttattttc atttaccatt
     4261 ttgtaggagt gcttgttatt tttgtggttg caatgtcatc tatactgcaa aagaagagag
     4321 taaagaaagg tatttaactt atatttttaa agagcttgat attttaagta ccattttaga
     4381 tactaaaaga gaagtggtgc aaatgcactt tggtggcgga actccaactt tttttagcgc
     4441 taaacaactt caaagtttga ttttaaaaat cagatctgtt tttggaaatt tttctaaaga
     4501 tgcagagatt agctgtgaga tcgatccgcg ttttttaaat gaggaacaag ccatagtttt
     4561 aacgcaaaat ggctttaatc gtattagctt tggagtgcag gattttgatg aaaaagttca
     4621 aaaagaaatt catcgcatcc agtcttttga attaacacaa aatgctttaa atcttgtaag
     4681 aaataaaggc ataaagtctg taaatatgga tttaatttat ggtttgcctt atcaaaattt
     4741 acaaagcttt acacaaactt tagaaaaagt tatgctttta aaccctgatc gtttggcgat
     4801 ttttaattac gctcatgtgc cttggcttaa gaaaaatatg agaaaatttg atgaaaatac
     4861 cttgccaagt cctgatgtta agcttgaaat tttagaattt tgtgagaaat ttttaagcaa
     4921 aaatggttat aaaatgatag gaatggatca ttttgcaaaa gaaaatgatg agctttttaa
     4981 agctttagaa aatggaactt tacatagaaa tttccaaggt tataccacca aaggcggtgc
     5041 tgatttagtc ggtgttgggc ttacaagtat aggcgaagga caaagacatt atgcacaaaa
     5101 ttttaaagat atgtcaagtt atgaagctgc attagataga ggagttttac cttttgaaag
     5161 aggtgtgatt ttaagcgatg atgatgagct tagaaaagca gtgattatgg agttaatggc
     5221 aaattttaag cttgatatta agtcaataga aaaagaattt tccattgatt ttaaagagta
     5281 ttttaaagag gatttaaaag ctttagaaga atacaaagat tttgttaatt ttgatgaaaa
     5341 ttttatcaaa gtcaatgaaa caggtgtttt gcttataaga aatattgcta tgtgttttga
     5401 tgcttatatg aaaaacatta gtgaagataa aaaagtattc tcaaaaacgg tgtaagatga
     5461 aatttagtca aataagtgat gcttgcgtta aatgtggcaa atgtatacct gtttgtacta
     5521 tacatgaaga aaatcgcgat gaaattacta gtccaagagg atttttagat cttttaactg
     5581 cttataaaga gggaagtcta gagcttgata aagaagctaa gaaagttttt gaatcttgtt
     5641 ttttatgcac caattgtgtt gaagtatgtc cgagtaaatt aagagtagat aatgccatag
     5701 aagaagttcg ttatgatata gctaaaaaat ttggtatagc ttggtataaa aaacttattt
     5761 ttttcttttt aagaagacgc aaaattttag atttggtagc taagcttggc tatgtgtttc
     5821 aaagttgtgc gtttaaaatt caaaatgaga atgaaaatac aggtatgaag gcaagatttt
     5881 ccatgccttt tgttaaaaag ggaagattac ttacaagttt taataaaaaa agtttcttaa
     5941 attctaatcc aaaatttatc aataatgatg gagaaaaaac aataggtttt tttgtaggtt
     6001 gtttggcgaa ttatttttac atagatacgg ctaatgcggt gcttaaaatc actaaggaat
     6061 taaaaatcaa tgtggatttg atgaaagaac aagtatgttg tggagcgccg caatttttta
     6121 cgggtgattt taaaagtgtt gaagttttgg ctaaaaaaaa tattgagtat tttgaaaaaa
     6181 aattagaaaa attagatgct attatagttc ctgaggccac ttgttcggct atgttaaaga
     6241 tagattatga acattttttt ataatgcaaa atgatttaga ctgggcaaaa cgcgcaaaat
     6301 gtgtgtcatc taagatatat atggctagcg agtattttta taaatttact tctttggaag
     6361 aaattttaaa aacaaaaaat aaatttaatt atagcattac ttatcacgat ccttgccatg
     6421 caagaaaaat gcaaggggtt tttaaagagc caagagaact tttaaaaaca aattatcatt
     6481 ttgtagaaat gagtaattct aatacttgtt gcggttttgg cggggtgagt atgcaaacgg
     6541 attattatga tagagcttta agtgtagggc ttaaaaaagc acaaatgatc gatgaaagta
     6601 aggctagtgt ggtaagtgcc gagtgttcag cttgtagaat gcaaatttca aatgcattag
     6661 aacaaaattc aagcaaggtt gtttttgcta gtcctttaga acttatagca aaagctttgt
     6721 gatgatgaag atagtattta aaggcaaaag ttctgaatat gaaattcaaa gatcgtgctt
     6781 ttgtgttgat gcttttgtga ttaaagataa gattgaagaa cgagatggtg ttgattttat
     6841 cacttcaaat gtagatcttt tggaatttag tgatgacagt tttacttttg aagaaattgt
     6901 aaaacatttt aatatttgtg atactgaaga tatgattatc gttgaagatt ttgacatgaa
     6961 atcaaacaaa gataatcaaa accaagaaga tgatatagaa cacaacatct taaaatccga
     7021 aaaaataata catgaaaaca caaaacaaac aagtatgcaa
//
LOCUS       DAPIWQ010000090         7045 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.090, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000090 DAPIWQ010000000
VERSION     DAPIWQ010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7045)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7045)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7045
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.090"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(13..669)
                     /locus_tag="RJ267_001256"
     CDS             complement(13..669)
                     /locus_tag="RJ267_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HDV7389107.1"
                     /translation="MSKIDEISSKSKANILEHLKKAYKETTFTRIESIDPVEHIQTTQ
                     DMLTEMKQKMSDNKYIVENATKDTLEEKINEIVAKYSFKSMIYGADLNLNLEQIKAEK
                     KICFDKEIENLRSEVFHSDFSIIHARAGVSSHGVALIPSSKTQPRMLSLAPKLCIVLL
                     KKENVVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQIAHIIIY
                     "
     gene            complement(662..2101)
                     /locus_tag="RJ267_001257"
     CDS             complement(662..2101)
                     /locus_tag="RJ267_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HDV7389108.1"
                     /translation="MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFK
                     DWQGLRAKAKQAKNNALMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGIEKIMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GKNPPLGANNVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWTVQNFASILPVI
                     KKWYAFKELPQIKMDLYKEVQKLEGVSYE"
     gene            complement(2098..2838)
                     /locus_tag="RJ267_001258"
     CDS             complement(2098..2838)
                     /locus_tag="RJ267_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDV7389109.1"
                     /translation="MMKKVYFYATCLGSTAMQQSVLNAIKLLRREGIEVIFKKNQTCC
                     AQPSFNSGYFDESREIALYNVDLFDKDYPIVVPSGSCAGMMSHDYKELFKNRPEFSKI
                     KTFSSRVIELSQYLDEVLKVDYEDKGVPIKVTWHSNCHALRVQKSIQASKNLIKKLKN
                     VELVELQYEEECCGFGGTFSVKEPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNID
                     GTMKRMGLDIKGIHLYDFLLKRLEGGRL"
     gene            complement(2962..4644)
                     /locus_tag="RJ267_001259"
     CDS             complement(2962..4644)
                     /locus_tag="RJ267_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HDV7389110.1"
                     /translation="MEQILTWQQIYDPFSNIWLSALVAFLPILCFLVCLVVLKLKGYQ
                     AGFLTVILATLVALFAYKMPWNLVGASFIQGFTNGMWPIAWIIIAAIFLYKLSIKSGS
                     FEIIKKSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAA
                     GLCLIANTAPVAFGAVGIPIIAMANLVGIEQHSVSAMVGRMLVPLSLTIPFFIVFLMD
                     GFKGIKETFPAILVAALSFTTTQFLSSNHLGAELPDIISAVVSLAVTTVFLKFWKPKN
                     IFRFDNESNFTQDNTLSFNQILKAWSPFILLIVCIIIWTQPWFKALFDKDGILSYTSI
                     TLQFSNITTGILSPSITGIGEAKPLSLALGVDLINGKTVAQAGTAILLAAFLTIAILK
                     IKAEDAAECFWVTLKEMAIPCITIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFSFFS
                     PIIGWIGVFLTGSDTSANLLFGTLQQVSAQKLGISEALFLAANSVGGVVGKMISPQSI
                     AIACAAVGLVGKESDLFKFTLKYSVAFIILIGIWTCIIAFFLQGIIPEVIVK"
     gene            complement(4816..5385)
                     /gene="cdtC"
                     /locus_tag="RJ267_001260"
     CDS             complement(4816..5385)
                     /gene="cdtC"
                     /locus_tag="RJ267_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtC"
                     /protein_id="HDV7389111.1"
                     /translation="MKKIITLFFMFITLAFATPTGDLKDFTEMVSIRSLETGIFLSAF
                     RDTSKDPIDQNWNIKEIVLSDELKQKDKLADELPFGYVQFTNPKESDLCLAILEDGTF
                     GAKSCQDDLKDGKLETVFSIMPTTTSAVQIRSLVLESDECIVTFFNPNIPIQKRFGIA
                     PCTLDPIFFAEVNELMIITPPLTAATPLE"
     gene            complement(5396..6193)
                     /gene="cdtB"
                     /locus_tag="RJ267_001261"
     CDS             complement(5396..6193)
                     /gene="cdtB"
                     /locus_tag="RJ267_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cj-CdtB"
                     /protein_id="HDV7389112.1"
                     /translation="MKKIICLFLSFNLAFANLENFNVGTWNLQGSSAATESKWSVSVR
                     QLVSGANPLDILMIQEAGTLPRTATPTGRHVQQGGTPIDEYEWNLGTLSRPDRVFIYY
                     SRVDVGANRVNLAIVSRMQAEEVIVLPPPTTVSRPIIGIRNGNDAFFNIHALANGGTD
                     VGAIITAVDAHFANMPQVNWMIAGDFNRDPSTITSTVDRELANRIRVVFPTSATQASG
                     GTLDYAITGNSNRQQTYTPPLLAAILMLASLRSHIVSDHFPVNFRKF"
     gene            complement(6190..6996)
                     /gene="cdtA"
                     /locus_tag="RJ267_001262"
     CDS             complement(6190..6996)
                     /gene="cdtA"
                     /locus_tag="RJ267_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtA"
                     /protein_id="HDV7389113.1"
                     /translation="MQKIIVFILCCFMTFFLYACSSKFENVNPLGRSFGEFEDTDPLK
                     LGLEPTFPTNQEIPSLISGADLVPITPITPPLTRTSNSANNNAANGINPRFKDEAFND
                     VLIFENRPAVSDFLTILGPSGAALTVWALAQGNWIWGYTLIDSKGFGDARVWQLLLYP
                     NDFAMIKNAKTNTCLNAYGNGIVHYPCDASNHAQMWKLIPMSNTAVQIKNLGNGKCIQ
                     APITNLYGDFHKVFKIFTVECAKKDNFDQQWFLTTPPFTAKPLYRQGEVR"
BASE COUNT         2323 a         1248 c         1092 g         2382 t
ORIGIN      
        1 tctagtatag aatcagtaaa taataatatg tgcaatttgt ggcccatgaa caccaaaaac
       61 agtgataagt tctatatctg ctgttcttga aggccctgct ataaataaga tattagtagg
      121 taaaatttca ttttcttttt ttactaaatt taaagcttcg ctaagacttt taacaacatt
      181 ttctttttta agcaatacta tgcaaagttt aggtgcaagg cttagcattc taggttgggt
      241 tttacttgaa ggtataagtg caactccgtg agagcttacc cctgctcttg cgtgaatgat
      301 ggaaaaatca ctatgaaaaa cttcagatct taaattttcg atttctttat caaagcaaat
      361 ctttttttct gctttgattt gttctaaatt taaatttaaa tccgctccat aaatcatact
      421 tttaaagcta tattttgcga caatttcatt gattttttct tctaaggtat cttttgtagc
      481 attttcaacg atgtatttgt tatcgctcat tttttgcttc atttctgtaa gcatatcttg
      541 ggttgtctgg atatgttcta caggatctat actttcaatg cgtgtgaaag ttgtttcttt
      601 gtaagctttt ttaagatgtt ctaaaatatt tgctttgctt ttgcttgaaa tttcatcgat
      661 tttactcata gcttactcct tctagttttt gcacttcttt ataaagatcc attttaattt
      721 gaggtaattc tttaaaagcg taccattttt taatcacagg caaaatgctt gcgaaatttt
      781 gtaccgtcca gttgaaataa tgtgcttttg aaagtgaaaa acgccattta tcgccattgg
      841 ttgcgatatt tttaaattgt ttaaaagcaa aggcttctag ggcattgtga tgaacattat
      901 ttgctcctaa aggtggattt ttaccttgtc ctattttatc acatcttaat ttgcgaataa
      961 gatcagccaa aggaatttgg actggacaaa cttcagaaca acgcccacaa agtgaacaga
     1021 aattcaaaat atctcctgta tgatctatac caaaaatatt aggactgatt acttctccta
     1081 taggtcctgg ataagtggtt tgataagcat gtccgccgat ttgatcataa acagggcaaa
     1141 aattcataca agccccgcat cgaatacaac gcaaagcctc ataataatcc tcatgagcta
     1201 acattttaga gcgattgtga tcaaataaaa tcacatgtac ttctttagga ccatctaaat
     1261 ctccattttt tctaggacct gtaatgatat tgttataagt tggtataaat tgtcctgtgg
     1321 ctgaaggagt aagtaaagaa accatagtag ccgcatcttc aaagctttcc atgatttttt
     1381 ctataccaca aagtgcgata tgaatatcag gtgctgtagt gcacattcta ccatttcctt
     1441 cattttctat aagccaaaaa gctccttctc ttgacatggc aaaattgacc ccactaagtc
     1501 caagttttaa gccttcaaaa tcttttctta aatgttctct agccaccgca tttaaacttt
     1561 cgggttcatc gttttctaaa tttgctccta atttttcttt gaaaatttct ccgatttcat
     1621 ggcggtttct atgtatggca ggtacaacta tgtgtaaagg gggttcttca ttaagctgta
     1681 aaataagctc tccaagatcg gtttctatag cttttaaacc ttttttttct aggtagtgat
     1741 ttaggcctat ttcttcactt gccatagact tgccttttaa aagcttggtg atattttttt
     1801 ctttcatgat ttcatagacg atttcacagg catcttcatc actacttgcc caatgcacct
     1861 taatgccatt ttttgtagca tttttttcaa attctaaaag tctttcttct aagctcatta
     1921 aggcattatt tttagcttgc ttagctttag ctcttaagcc ctgccagtct ttaaatctag
     1981 catcaataac attgagtcta tttttttgca aagtatgcat ggcagtcatt aaattttctt
     2041 gcatttgttt gtcattgagt ttaatttgaa cgatttgttc gtgaggaatt ttttgactca
     2101 tagtctccct ccttctaagc gtttaagtaa aaagtcatat aaatgtatgc cttttatatc
     2161 caaacccatt cttttcattg tgccatctat atttaaaaga caacctccat caccactgat
     2221 gagatatttt gcaccgctat tttgtatatc tttgattttg cttcttacca tagcatttga
     2281 aatttcaggc tcttttactg aaaaggttcc tccaaaacca cagcattctt cttcgtattg
     2341 aagttctact aattctacgt tttttagttt tttgataaga tttttactcg cttgtatgct
     2401 tttttgcact cttaaagcat ggcaattaga atgccaagtt acttttatag gtacaccttt
     2461 atcttcataa tctactttta aaacttcatc aaggtattgt gaaagttcta tcactctaga
     2521 gctaaaagtt tttattttgg aaaattcagg cctgttttta aaaagctctt tatagtcatg
     2581 actcatcata cccgcacaag aaccactggg tacaacgatg ggataatctt tatcaaataa
     2641 atctacatta tataaagcga tctcacgact ttcatcgaaa taacctgagt taaaagaagg
     2701 ttgggcgcaa caggtttgat tttttttgaa aatcacttca ataccctcac gccttaaaag
     2761 ttttatcgca tttaaaacgc tttgttgcat agcagtactt cctaagcatg tggcgtaaaa
     2821 atacactttt ttcatcattt ttctcctttt aggataattt aggataaatg ttctaatcct
     2881 gtaaaaataa aagcaaagta aaatttctaa caaatattct aaaaacgaat atttgttgaa
     2941 ataaaactta aattttttta attatttcac tataacttca gggatgattc cttgtaagaa
     3001 aaaagctata atgcaagtcc aaattcctat taaaataata aaagctacag aatattttaa
     3061 tgtgaatttg aaaagatcag attcttttcc cacaagtcca accgctgcac aagctatagc
     3121 aatgctttgt ggactgatca tcttcccaac aaccccacct actgaattag ctgctaaaaa
     3181 taaagcttcg ctaataccta gtttttgagc gcttacttgt tgcaaggttc caaaaagtaa
     3241 attagcactt gtatcagagc ctgttaaaaa tacccctatc cagccaatga ttggtgaaaa
     3301 gaaagaaaaa gcatcacctg tgtgtgcaaa agcaagtcct aaagtagtgc tcataccact
     3361 atttttagag ataaaagcaa aggccacaac caaacctatg gtgatacaag gtatagccat
     3421 ttcttttaag gtaacccaaa agcattctgc agcatcttcg gctttgattt ttaaaatagc
     3481 tatagttaaa aaagcggcaa gtaaaatcgc tgttcctgct tgagctacgg tttttccatt
     3541 gattaaatct acacccaagg ccaaagataa aggcttagct tctcctatgc ctgtgataga
     3601 agggcttaaa attccagttg tgatattgct aaattgtaaa gtaatacttg tatagcttaa
     3661 aattccgtcc ttatcaaaga gagctttaaa ccaaggttgt gtccaaatga taatacaaac
     3721 aatgagtaaa ataaaaggtg accaagcttt taaaatttga ttaaaactta aggtgttatc
     3781 ttgagtgaaa ttgctttcat tgtcaaatct aaaaatattt tttggtttcc aaaatttcaa
     3841 aaatacagtc gtaactgcta aagaaaccac agctgaaata atatcaggta attccgctcc
     3901 taggtgattt gagcttaaaa attgagtagt tgtaaaactt agcgccgcaa ctaaaatagc
     3961 tggaaaagtt tctttaatac ctttaaatcc atccattaaa aaaactatga aaaaaggtat
     4021 agtaaggctt aaaggaacta gcattctacc taccatggca gaaactgaat gctgttctat
     4081 gccgacaaga tttgccatag caataatagg aattcccacc gcaccaaaag caacaggagc
     4141 ggtatttgcg ataagacaaa gccctgcagc ttgtaaagga cgcaagccaa gtcctactaa
     4201 aagtgcagcg gttatagcca cagggccacc aaaacctata gcaccctcta aaaatgaacc
     4261 aaaacaaaaa cctattaaaa tcacttgaat tctatgatct ggagtaatgc tcatcacgct
     4321 ttttttaatg atttcaaaag aacctgactt gatagaaagt ttgtaaagaa agattgccgc
     4381 gatgataatc caagctatag gccacatacc atttgtaaag ccttgaataa aacttgcacc
     4441 cactaaattc caaggcattt tataggcaaa taaagctact aaagtagcaa gtataacagt
     4501 taaaaaacct gcttgatagc ctttaagttt taaaacaacc aaacaaacta aaaaacatag
     4561 tataggtaaa aatgccacta aagcacttag ccaaatattt gaaaaagggt cataaatttg
     4621 ttgccatgtt aaaatttgtt ccaatttttc ctccttgata attattatgt ataaatttat
     4681 tgtaacaaaa aattacatta aaataaaaaa attatagagc aaggtaaatt acattgtatt
     4741 attattaatt attttgtgta ttttagtaat atcataaata ttaaataaat ataaaaatag
     4801 aacaagataa aaatcttatt ctaaaggggt agcagctgtt aaaggtgggg ttataatcat
     4861 tagttcattt acttcagcaa aaaaaatagg atctagggtg caaggggcta ttccaaagcg
     4921 tttttgtata ggaatatttg gattaaaaaa agttactata cattcatcag attccaaaac
     4981 taaagaacga atttgcacag ctgaagttgt tgttggcatt atagaaaata cagtttctaa
     5041 tttaccatct tttagatcat cttgacaaga ttttgctcca aaggttccat cttctaagat
     5101 ggctaaacaa agatcgcttt cttttggatt tgtaaattgc acataaccaa aaggaagttc
     5161 atcagctaat ttatcttttt gttttaactc atcgcttaaa acaatttctt taatattcca
     5221 attttgatca ataggatctt ttgaggtatc cctaaaggcg cttaaaaaaa ttcccgtttc
     5281 taagcttctt atagaaacca tttcggtaaa atctttcaaa tctccagtag gagttgcaaa
     5341 ggctaaagtt ataaacataa aaaacaaagt aataattttt ttcatattaa atgtcctaaa
     5401 attttctaaa atttactgga aaatgatctg aaactatatg agatcttaaa cttgcaagca
     5461 ttaaaatcgc agctaaaagc ggtggagtat aggtttgttg tctatttgaa tttcctgtaa
     5521 ttgcataatc aagagtccct ccgcttgctt gagttgcgct agttggaaaa accactctaa
     5581 ttctatttgc taattctcta tccactgtac ttgttatagt agaaggatca cggttaaaat
     5641 cccctgctat catccagtta acttgaggca tatttgcaaa atgtgcatct acagctgtga
     5701 taattgctcc tacatctgtt cctccattag ctaaagcatg gatattgaaa aaagcatcat
     5761 ttccattgcg aattcctata atgggtcttg aaactgtagt aggtggaggt aaaacaatca
     5821 cttcttcagc ttgcattctt gaaactatag ctaaatttac acgattagct cctacatcaa
     5881 cgcgagaata ataaataaaa accctatcag gccttgaaag agttcctaaa ttccactcat
     5941 attcatcaat aggtgttcca ccttgttgca catggcgtcc tgttggagtg gctgttcttg
     6001 gtaaagttcc tgcttcttgt atcattaaga tatctaaggg gtttgctcca cttacaagtt
     6061 gtcttacact aacactccat ttgctttctg tggctgcgga tgagccttgc aaattccaag
     6121 tgccaacatt aaaattttct aaatttgcaa aagcaaggtt aaaagataaa aataaacata
     6181 taattttttt catcgtacct ctccttggcg atataaaggt tttgcggtaa aaggcggagt
     6241 agttaaaaac cattgttgat caaaattatc tttttttgca cactctacgg taaaaatttt
     6301 aaaaaccttg tgaaaatcac cataaagatt tgtaataggt gcttgtatgc attttccatt
     6361 tcctaaattt ttaatttgaa ccgctgtatt gctcataggg ataagtttcc acatttgtgc
     6421 gtgattgctt gcatcacaag gataatggac aattccatta ccataagcat taagacaagt
     6481 attggttttg gcatttttaa tcattgcaaa atcattagga taaagcaaaa gttgccaaac
     6541 tctagcatcg ccaaatcctt tgctatcgat taaagtatag ccccaaatcc aatttccttg
     6601 tgctaaagcc caaaccgtta aagctgctcc gctagggcct aaaatggtta aaaaatcaga
     6661 aaccgcaggg cgattttcaa aaattaaaac atcattaaaa gcttcgtctt taaagcgagg
     6721 attgatccca tttgctgcat tattgttggc actattgctt gttctagtta aaggtggggt
     6781 aataggagta ataggtacta aatcagcacc gctaattaaa cttggaattt cttgattggt
     6841 aggaaaagta ggttcaagtc ctagttttaa aggatcagta tcttcaaatt ctccaaatga
     6901 acgccccaaa ggatttacat tttcaaattt agaagaacat gcataaagaa aaaaagtcat
     6961 aaaacaacat aaaataaaaa ctataatttt ttgcattaaa aaccttgata tgtatttaaa
     7021 tttttaagaa aataataaca taaat
//
LOCUS       DAPIWQ010000091         7038 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.091, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000091 DAPIWQ010000000
VERSION     DAPIWQ010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7038)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7038)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7038
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.091"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..1029
                     /locus_tag="RJ267_001263"
     CDS             <1..1029
                     /locus_tag="RJ267_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDV7389114.1"
                     /translation="CYIEELLKKLSYKKPYQVIFKNIDKLGKTFYLETLLIPILDKNN
                     ELIEIVAFSHDVSNSFKLNEELALNHAKLRELSINLENTVKNHQQEFIQLGKKFEKKM
                     QIALEKNEKDIKIAYEEILKSSLEQMISDIAHQWRQPLNELGIAMFQMKQNLKDEKGF
                     AEIYSQSKDMIKNMSETIDVFRTLFNKGVEQCVFIKETLNKALEIAFETIEKNHVNIN
                     IVSKSDYEVLAYENGLIRVFLNLILNSIEAFKNKKRKIITINFSKFGKNYLKITIKDN
                     AGGIDKENLDKIFQPYFTTKHPSQGIGVGLYISRQIIESFQGKIKVKNGKDGACFEIF
                     LKLKERVE"
     gene            1032..1712
                     /locus_tag="RJ267_001264"
     CDS             1032..1712
                     /locus_tag="RJ267_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDV7389115.1"
                     /translation="MSQECKELIILVVEDEVKARESMINILSERFSKVIGAQNGDEGL
                     KKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGI
                     DKYLIKPVDIEELFKVLDYLIGEKIEANMLVKISEEYQFNKTKRTLIYSGGEIVLTKK
                     ELAFISLLLKQPGALVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEDFIKNVPSL
                     GYKININK"
     gene            1838..3304
                     /gene="ccoN"
                     /locus_tag="RJ267_001265"
     CDS             1838..3304
                     /gene="ccoN"
                     /locus_tag="RJ267_001265"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HDV7389116.1"
                     /translation="MHPGNVLNYDYTVARYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESRFLMAVGKL
                     HFWLYMLTMVLAVISLFMGVTTSKEYAELEWPLDILVVLVWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMEVPTYFVTGMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRVFKRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIVPYYWIRAI
                     GGLLYLIGFFMFTYNIYKTIACGRVLDKEPKSASPMAA"
     gene            3317..3982
                     /gene="ccoO"
                     /locus_tag="RJ267_001266"
     CDS             3317..3982
                     /gene="ccoO"
                     /locus_tag="RJ267_001266"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HDV7389117.1"
                     /translation="MFSWLEKNPFFFAVAVFVVIAYAGIVEVLPNFAENARPIEGKKP
                     YTVLQLAGRAVYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLARVGNYRTADWHENHMWDPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVF
                     NVPYDAENGTKLGSWEDAQAEVKAEAQAIVDQMKNQEVKDAFAKGEIKEIVALIAYLN
                     SLK"
     gene            3987..4250
                     /locus_tag="RJ267_001267"
     CDS             3987..4250
                     /locus_tag="RJ267_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HDV7389118.1"
                     /translation="MEHLSIVFDVIKNLITFDLATVQKHEWEIFQGYGFFALVMFLSI
                     VLYAYWYHLYRTEKKGERNYENYANLALKDDIDDSVLESKRSA"
     gene            4250..5113
                     /locus_tag="RJ267_001268"
     CDS             4250..5113
                     /locus_tag="RJ267_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDV7389119.1"
                     /translation="MQWLNLEDNVNLLSLIGAILIILITLVIVGRMFKQMKEKKGESE
                     LSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLWGYPLNSFSSIGQYNEEVATHN
                     TKFEEKFKNLSPEDKIAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGIINVI
                     KHGSKGMNFPGGEMLGAADLGVAEEDIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA
                     TCAACHGEDGKGQDGMFPDLTKYGSAAFVVDVLHSGKAGFIGTMPSFPTLNDIQKEAV
                     GEYVISLSRGE"
     gene            5110..5331
                     /locus_tag="RJ267_001269"
     CDS             5110..5331
                     /locus_tag="RJ267_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HDV7389120.1"
                     /translation="MMENNNRCVFSLSGVTGMLIATVLLLVILAVLTIWGLKAQQEVM
                     QKPYSLKDVQSVKMFGSKEQDHRSIKEAQ"
     gene            5328..5429
                     /locus_tag="RJ267_001270"
     CDS             5328..5429
                     /locus_tag="RJ267_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389121.1"
                     /translation="MSKALEYLIVIGLVAAAAITAWSVLTVNHLHIG"
     gene            5426..6028
                     /locus_tag="RJ267_001271"
     CDS             5426..6028
                     /locus_tag="RJ267_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389122.1"
                     /translation="MKKILQDGFFLAIFFFVLLPSRVFALDAVLFNENILSQKVSNEI
                     NLIGKELYQKSNIFIGVMVGDKTEIETLLNKQKELPQSYILLLLSKNSHKVDIVGSKG
                     ALALIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYADIVDRVAKSLGLQLEHS
                     IGNANRDTINILRILIYGFICFALLYYAQRRIKRKKNVRN"
     gene            6015..6536
                     /locus_tag="RJ267_001272"
     CDS             6015..6536
                     /locus_tag="RJ267_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7389123.1"
                     /translation="MLETKKSFWPYGILLSLLAIIIACIVTIFIASHHPVYEDDFYFD
                     SYQNVENNYNQIQKQQVNFDKFFKVNFQNDKITFIGKRKIPSYEVDQNSYVANFKISA
                     LQNINSNDLKVQVLLTRPFTKNFDQKLEGQVKNGILSIALPKLDKGRWELKLKFYANQ
                     ETVGFFSYELNAQ"
     gene            6533..>7038
                     /locus_tag="RJ267_001273"
     CDS             6533..>7038
                     /locus_tag="RJ267_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389124.1"
                     /translation="MKLRIFSSSRQIREYYNQKKQQNALLDSAIHIGEFLDKVCLSNF
                     HKASSYESLLLMQEACLKSKDLEKKLGISVEFFAFLKNNEYLFSFFKELSLEKKSIED
                     LKNNDYYATYNEHLEILDEVYKNYLTLLEKNSFYDDLSLPKNYTLNKDFLDEYEAIVY
                     DLQGFLSK"
BASE COUNT         2445 a          810 c         1327 g         2456 t
ORIGIN      
        1 tgttatattg aagaactttt aaaaaaactt tcatataaaa aaccttatca agttattttt
       61 aaaaatattg ataaattagg caaaactttc tatcttgaaa ctttattaat ccccatattg
      121 gataaaaata atgaattaat agaaatagta gcattctctc atgatgttag taattctttt
      181 aagcttaatg aagagcttgc tctaaatcac gctaaattaa gagaattaag tattaatctt
      241 gaaaatacag ttaaaaatca ccaacaagaa tttatacagt taggtaaaaa atttgagaaa
      301 aaaatgcaaa ttgccttgga aaaaaatgaa aaagatatta aaatagcata tgaagagatt
      361 ttgaaatctt cattagaaca aatgattagc gatatagcac atcaatggag acaaccgtta
      421 aatgagctcg gtattgccat gtttcaaatg aagcaaaatc ttaaagatga aaaaggattt
      481 gctgaaattt actcacaatc aaaagatatg attaaaaata tgtcagaaac aattgatgtg
      541 tttagaactt tgtttaacaa aggagtagag cagtgtgtat ttataaaaga gactttaaat
      601 aaagccttgg aaattgcttt tgaaactata gaaaaaaatc atgtaaatat taatattgtt
      661 tcgaaaagtg attatgaagt tttggcatat gagaatggtt taataagagt ttttcttaat
      721 ttgattttaa attcaataga agcatttaaa aacaaaaaaa ggaaaatcat aacaataaat
      781 ttttcaaaat ttggaaaaaa ttatctgaaa attacaataa aagataatgc tggtgggatt
      841 gataaagaaa atttagataa aatttttcaa ccttatttta caacaaaaca tcctagtcaa
      901 ggtataggag taggacttta tataagtaga caaattatcg aaagtttcca aggaaaaata
      961 aaagttaaaa atggaaaaga cggggcttgt tttgagatat ttttaaaact aaaagagagg
     1021 gtagagtaga aatgtcacaa gaatgtaaag aattgataat attagtagtt gaagatgagg
     1081 ttaaggctag agaatcaatg attaatatat taagcgaacg ctttagtaaa gtaatcggag
     1141 ctcaaaatgg agatgagggg cttaaaaaat ttaaaaaatt taagccagat ttagttatca
     1201 cagatattgc tatgcctatt atggatggac tggatatggc aagagagatt aaagaaattt
     1261 cagatgatgt cccaattgtt gttcttagtg cgtattcaga gaaagagaga cttttgcgtt
     1321 ctattgatat tggtatagat aaatatttga ttaaacctgt tgatatagaa gagttgttta
     1381 aagttttaga ttatctgata ggtgaaaaaa ttgaagcaaa tatgcttgta aaaatttctg
     1441 aagaatatca atttaacaaa actaaacgaa ctttaattta cagtggtgga gaaattgttt
     1501 taactaaaaa agaattggct tttatttctt tgcttttaaa gcaacctgga gctttggttt
     1561 tgcatgaaga tattaagaaa aatgtttgga taggtgaaca tgtgagcgat actgctgtta
     1621 gaacttttat aaaaagagta agagataaag tgggtgaaga ttttataaaa aatgtgccaa
     1681 gtttaggtta taagataaat atcaataaat aagactgatt tagccttaaa atataaaaca
     1741 taacaaatga ttaacaaaat tatcattttt aagaaaaaat gtataattaa tattctataa
     1801 tattctcttg ttatcaaaaa ttttaaggag aaagtcgatg catccaggta atgtattaaa
     1861 ttacgactat acggttgcaa gatattttat gtttgcgacc atattgtttg gcattgttgg
     1921 tatggctata ggaactctta tagcttttca aatggcatat cctaatttaa attatttagc
     1981 aggagaatat gccacttttt caagacttag accacttcat acttcaggtg tgatttttgg
     2041 ttttatgctt tcagggattt gggcaacttg gtattatata ggtcagcgtg ttcttaaagt
     2101 gagtatggct gagtcaagat ttttaatggc tgttggtaag cttcattttt ggctttatat
     2161 gcttactatg gttttagctg ttatatcttt gtttatgggt gtgactacat ctaaagaata
     2221 tgcagagctt gagtggcctt tagatattct tgttgttctt gtttgggttt tatggggtgt
     2281 aagtattttt ggacttattg gaattcgccg tgaaaaaacc ctttatattt ctctatggta
     2341 ttatatagct acatttttag gtatagctat gctttatctt tttaacaaca tggaagtacc
     2401 aacttatttt gttactggaa tgggtaaatg gtggcatagt gtatcaatgt atgcaggaac
     2461 aaatgatgct ttagtacaat ggtggtatgg acataatgct gtggcatttg tatttactgt
     2521 gggtattatt gctcaaattt attacttctt gccaaaagaa agtggtcagc cgattttctc
     2581 ttataaactc tctttatttg cattttgggg cttaatgttt gtttatcttt gggcaggtgg
     2641 tcaccatttg atttattcaa ctgtacctga ttggatgcaa actatgggtt cggttttctc
     2701 tgtagtattg attttacctt cttggggttc agcgattaat atcttgctta ctatgaaagg
     2761 tgagtggagt cagcttcgcg agagtccgtt gattaaattt atgattttgg catcaacttt
     2821 ctatatgttc tcaacacttg aagggccaat tctttcaatt aaatctgtta atgctttagc
     2881 acactttaca gattggattc caggacatgt tcatgatgga acattaggtt gggtaggatt
     2941 tatgactatg gctgcgcttt atcatatgac tcctagagtt ttcaaaagag agctttatag
     3001 caaatcttta atggaagctc aattttggat ccaaaccaca ggtatagttc tttattttgc
     3061 ttcaatgtgg attgcgggta ttactcaagg tatgatgtgg agagcgacag atgagtatgg
     3121 taacttgctt tatagcttta ttgatactgt tgtggctatt gttccttatt attggattag
     3181 agcgattggt ggattgttgt atcttatcgg tttctttatg tttacttata atatttacaa
     3241 aacaattgct tgtggaagag tgcttgataa agaaccaaaa agcgcttcgc ctatggcagc
     3301 ataaaaagga gaaaatatgt ttagttggtt agaaaaaaat ccattctttt ttgctgtagc
     3361 tgtttttgta gtgattgctt atgcaggcat agttgaagtt ttaccaaatt ttgcagaaaa
     3421 tgcaagacca attgaaggta aaaaacctta tacggtttta caacttgcag ggcgtgcagt
     3481 atatattaaa gatagttgta atgcttgtca ttcacagctt attcgtccat ttaaatcaga
     3541 aacagatcgt tatggtatgt attctgtaag tggtgaattt gcttatgata gaccttttct
     3601 ttggggctca aaaagaacag gacctgatct tgctcgtgta ggaaattata gaacggctga
     3661 ttggcatgaa aatcatatgt gggatcctac ttctgttgtt ccagattcta ttatgccttc
     3721 atataagcat atgtttaaaa ataatgcaga tattgaaact gcttatgctg aggctttaac
     3781 tgtgaaaaaa gttttcaatg ttccttatga tgcagaaaat ggaacaaaac ttggttcttg
     3841 ggaggatgca caagctgaag taaaagctga agctcaggct atagttgatc aaatgaaaaa
     3901 tcaagaagta aaagatgctt ttgctaaagg tgaaatcaaa gaaatagttg ctttgatcgc
     3961 ttatttaaat agcttaaagt aagatgatgg aacatttatc aatagttttt gatgtgatta
     4021 aaaatttaat cacatttgat ttagcaacag ttcaaaaaca tgagtgggag attttccaag
     4081 gttatggttt ttttgcactc gtgatgtttt tgtcaatagt attatatgcg tattggtatc
     4141 atttatatag aacagaaaaa aaaggcgaga gaaattatga aaattatgca aaccttgcct
     4201 taaaagatga tattgatgat agtgtattag aaagtaaaag gagtgcttaa tgcaatggtt
     4261 aaatttagaa gataatgtta atctcttatc tttaattgga gctattctta tcattttaat
     4321 cacactagtt attgtgggta gaatgtttaa gcaaatgaaa gaaaaaaaag gcgagtcaga
     4381 gcttagtgaa catagttggg atggaatagg agagtataaa aatgctgttc ctactggttg
     4441 ggctgtggta tttttcctga ctattgtttg ggctatttgg tattttctat ggggatatcc
     4501 tttaaattct ttttcaagta taggtcaata taatgaagaa gtagcaactc ataatacaaa
     4561 atttgaagaa aaatttaaaa atttatctcc tgaagataaa atagcaatgg gtcaaaatat
     4621 ctttttagtt cagtgttcgg cttgtcatgg aattacagga gatggtatca atggtaaagc
     4681 tcaaaattta aatatttggg gtagtgaaga aggtataatc aatgtaatta aacatggttc
     4741 aaaaggtatg aattttccag gtggagaaat gcttggtgct gctgatttag gtgtagcaga
     4801 agaagatatc cctgctattg ctgcttatgt agcaaaagat ctttcagcta ttaagaaaac
     4861 tgcaaatgaa aatttagtag caaaaggtaa agaagcttat gcaacttgtg cagcatgcca
     4921 tggagaagat ggaaaaggtc aagatggaat gttcccagat cttacaaaat acggttctgc
     4981 agcttttgta gtagatgttt tacatagtgg taaggctggt tttataggaa caatgccgag
     5041 ttttccaaca cttaatgata ttcaaaaaga agctgttggc gagtatgtaa tttctctttc
     5101 aaggggtgaa tgatggaaaa taataataga tgcgtgtttt ctctttcagg tgttacaggt
     5161 atgttaattg ctacggtttt gttgcttgtt atcttagcag ttttaactat ttggggtctt
     5221 aaagctcagc aagaagtgat gcaaaagcca tatagtctta aagatgtaca aagtgtaaag
     5281 atgtttggtt caaaagaaca agatcataga agtataaagg aagcacaatg agtaaggctt
     5341 tggaatattt aattgttatt ggtttagttg ctgctgctgc aatcaccgct tggtcggttt
     5401 tgaccgtaaa tcatcttcat ataggatgaa aaaaatatta caagatggct tttttttagc
     5461 tatcttcttc tttgttttat tgccttctag ggtttttgct cttgatgctg tactttttaa
     5521 tgaaaatatt ttaagtcaaa aagtaagtaa cgagattaat cttataggaa aagagcttta
     5581 ccaaaaaagt aatattttta tcggcgttat ggttggtgat aaaactgaaa ttgaaacttt
     5641 attaaataaa caaaaagaac ttcctcaatc ttatatattg cttcttttgt caaaaaattc
     5701 tcacaaagtt gatatagtgg gctcaaaagg tgctttagct ttgattgata aagaagctgt
     5761 gcttagtcct tatcctggaa caggatctat tttgccgata ttagctacaa ataaaggtga
     5821 tatttataat gctgctatac ttaatggtta tgcagatatt gtagatcgtg tggcaaaatc
     5881 cttgggatta caattagaac attctatagg taatgcaaat cgtgatacta tcaatatttt
     5941 aagaatactt atctatggat ttatttgctt tgcattgtta tactatgcac aaagaagaat
     6001 aaagaggaaa aaaaatgtta gaaactaaaa aaagtttttg gccttatggt attttgcttt
     6061 cacttttggc tataattatt gcttgtattg taacgatttt tatagcaagt caccatcctg
     6121 tgtatgagga tgatttttat tttgactctt atcaaaatgt tgaaaataat tacaatcaaa
     6181 tacaaaaaca acaagtaaat tttgataaat tttttaaagt aaattttcaa aatgataaaa
     6241 tcacttttat aggtaaaaga aaaattccta gttatgaagt ggatcaaaat tcctatgttg
     6301 caaattttaa aatttctgca ttacaaaata taaattctaa tgatttaaaa gttcaagttc
     6361 ttcttacaag accattcact aaaaattttg atcaaaagtt agaaggacaa gttaaaaatg
     6421 gaattttaag tatcgcttta cctaaattag ataaaggtag atgggagctt aagctaaagt
     6481 tttatgcaaa tcaagaaaca gtgggttttt ttagctacga attaaatgct caatgaaatt
     6541 aagaattttt agctcttcaa ggcaaattag agaatattat aatcaaaaaa aacagcaaaa
     6601 tgctttatta gatagtgcta ttcatatagg tgaattttta gataaagttt gtttgagcaa
     6661 ttttcataag gcaagttctt atgaaagctt acttttaatg caagaagctt gtctaaaaag
     6721 taaggattta gaaaaaaaac taggaatttc ggtagaattt tttgcttttt tgaaaaataa
     6781 cgaatatctt ttttcttttt tcaaagaact tagtttagaa aaaaaaagta tagaagatct
     6841 taaaaataat gattattatg ctacctataa tgaacatttg gaaattttag atgaggtata
     6901 taagaattat cttactttgc ttgaaaagaa ttctttttat gatgatcttt ctttgcctaa
     6961 aaattacact cttaataaag attttttaga tgagtatgaa gctatagttt atgatttgca
     7021 aggttttttg agtaaatt
//
LOCUS       DAPIWQ010000092         7035 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.092, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000092 DAPIWQ010000000
VERSION     DAPIWQ010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7035)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7035)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7035
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.092"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            113..529
                     /gene="tatB"
                     /locus_tag="RJ267_001274"
     CDS             113..529
                     /gene="tatB"
                     /locus_tag="RJ267_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HDV7389125.1"
                     /translation="MSFGEIIVILVVAILVLGPDKLPEAIVQIAKILKAVKRNIDDAK
                     SSIEKEIRINDLKEEAKKYKDEFSSTNENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RDDKVKNNLSGQNLNTEEKPNLSKLETQDKNGKINV"
     gene            522..1259
                     /gene="tatC"
                     /locus_tag="RJ267_001275"
     CDS             522..1259
                     /gene="tatC"
                     /locus_tag="RJ267_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HDV7389126.1"
                     /translation="MFEELRPHLIELRKRLFISVACIVVMFIVCFALRSYILDILKAP
                     LIAVLPEVAKHVNVIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFAFGACFCYFVVVPLAFKFLINFGLNEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKIGLIDDSFLKRHFRIAVLVIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPAPKDKESDE"
     gene            1252..2280
                     /gene="queA"
                     /locus_tag="RJ267_001276"
     CDS             1252..2280
                     /gene="queA"
                     /locus_tag="RJ267_001276"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HDV7389127.1"
                     /translation="MNKDLLLSSYDYTLANELIANYPTNPKEDARLLVFDRKNKEIFH
                     TTFKNLQDFLPNCAIFFNDTKVIKARIYGNKASGGKIELFLHQPFLNSHNPLFLAQIK
                     GRIKKDEILYFKEDLKVRVVELLNDGLRKVQFFQNDKTLDTSNLYNLLDKIGHIPLPP
                     YIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG
                     TFKSVECENIQEHKMHSEFFNIPQQACEIIDSKQAILGVGTTVTRTIEYYTRTKTKNG
                     FCDLFLHPQNPPIRQNHLLTNFHLPKSTLIMLVSAFIGREQCLKLYELAIKEKYRFYS
                     YGDAMLIL"
     gene            complement(2269..3234)
                     /gene="lpxD"
                     /locus_tag="RJ267_001277"
     CDS             complement(2269..3234)
                     /gene="lpxD"
                     /locus_tag="RJ267_001277"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HDV7389128.1"
                     /translation="MKLSEIAEFLSLEYKGEDIEISALNSLLKANFTELTYCDGEKNT
                     KDIPHTGAAAILVSKEYENLVPKDTKALITQSPHLSFAFLSKLFAKPLISTAKEKVQN
                     IAKSARIMPNVYIGDNVNIGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCNIGQNCIIVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAINFKEKSQD"
     gene            complement(3231..3695)
                     /gene="ilvN"
                     /locus_tag="RJ267_001278"
     CDS             complement(3231..3695)
                     /gene="ilvN"
                     /locus_tag="RJ267_001278"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HDV7389129.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFS
                     RINIVTSGNERTFEQIVKQLHKLIPTYKVIESEEFIDKEMALVKIPLNENLGGLDAVL
                     KAYNGTIANSNENFLFLMVADDANRIDNFLKTIKKYNPSDIVRSGSVLMEIK"
     gene            complement(3692..5392)
                     /locus_tag="RJ267_001279"
     CDS             complement(3692..5392)
                     /locus_tag="RJ267_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HDV7389130.1"
                     /translation="MKELSGSAMICEALKEENVKIVFGYPGGAALNIYDEIYNQKYFK
                     HILVRHEQAALHAADAYARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHID
                     VPKDVSATLGLWEYSKEISMKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISS
                     NASEQIRELIKFTKIPAVETLMALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVS
                     VGARFDDRITGKTSEFAKHATIVHVDIDPSSISKIINAHYPIVGDIKEVLKELLEELK
                     KENFNTTFKEWHETLKRYNELYPLSYEDSNEILKPQWVIEECAKMAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYEYGIKAINIILNNAFLGMVRQWQSMFYKEHFSQTDLSTQPDFIKIAQGFGCE
                     GYEISNKEEFIQAFSQALKSDKTSLLNVKIDRFEDVLPMVPAGGAIYNMILPKAKDRQ
                     "
     gene            complement(5410..5853)
                     /locus_tag="RJ267_001280"
     CDS             complement(5410..5853)
                     /locus_tag="RJ267_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HDV7389131.1"
                     /translation="MTLKEQILNDIKEAMKQKDDFKRDSLRTLNAAFKQIEVDERIEL
                     DNERIYKIIASEIKKRKDVIELYLKANREDLAQKEQNEISLFEIYLPKQLSDEELTLA
                     LKQLIEELGVSSLKEQGLVMKEAKIKLGASVDGKRLNLALKELLQ"
     gene            complement(5865..6884)
                     /locus_tag="RJ267_001281"
     CDS             complement(5865..6884)
                     /locus_tag="RJ267_001281"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HDV7389132.1"
                     /translation="MKFVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEK
                     VNFMIKEARGVVCVALDETLAKKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACV
                     ICEIVKDNGDMARREDLEIFCQKHDLNMIAVSDLIEYRLKHESLIKLEEKSQSVLAGF
                     KAEKFIFSDHNQTQHIAFCFKDIKKCENVKFHISGSDFELLTSDKFSKLLEQIKFLSE
                     NGGVIVFMQGEKSSTTQYKNYGIGAQILRYFGIEEIKLLSQSCDKDYIGLEGFGLNLK
                     ACNFN"
BASE COUNT         2274 a         1311 c          961 g         2489 t
ORIGIN      
        1 ttttaatcct aattttctca ttagcgatga acttgcttta tatctctcat cttaaattta
       61 agttttttaa gtaaaatatt tattaaaata tcaaatcaaa gagtaatgat taatgagttt
      121 tggtgaaatt atagttattt tagttgtagc gattttagtc ttaggacctg ataaacttcc
      181 agaagctata gtacaaatag caaaaattct aaaggctgta aaacgcaaca tagatgatgc
      241 aaaatcaagc atagaaaaag aaatacgcat caatgactta aaagaagaag ctaagaaata
      301 caaagatgaa ttttcaagca ctaatgaaaa tatacgcaaa aaactcagct ttgaagaatt
      361 tgatgacctt aagagagata ttttagataa aacaaaggta gatttaacct ttgatagcag
      421 agatgataaa gtaaaaaata accttagcgg acaaaattta aatacagaag aaaaaccaaa
      481 tcttagcaaa ttagaaacac aagataaaaa cggaaaaata aatgtttgaa gaattaagac
      541 ctcatttaat agaacttaga aaacgccttt ttataagcgt tgcttgcatt gtagttatgt
      601 ttattgtatg ttttgccttg cgtagctata tcttagatat tctaaaagct ccacttatag
      661 ctgttttacc cgaagtagcc aaacatgtga atgtaattga agtacaagaa gccttattta
      721 ccgcaatgaa ggttagtttt tttgcagcct ttatcttttc tctacctgta attttttggc
      781 aattttggaa atttgtagct ccaggacttt atgataatga aaaacgcctt gtagtgcctt
      841 ttgttagctt tgcaagcatt atgtttgcct ttggggcttg tttttgctat tttgttgtag
      901 tgcctttggc ttttaaattt ttgattaatt ttggtttaaa tgaagatttt aatcctgtga
      961 ttaccatagg aacttatgta gattttttta ccaaagttgt tgtggctttt ggcttagctt
     1021 ttgaaatgcc tgtaattgcc tttttctttg ctaaaatcgg acttatagat gatagttttt
     1081 taaaacgcca ttttcgcata gctgttttag ttatttttgt tttttcagcc tttatgactc
     1141 cacctgatgt tttatctcaa tttttaatgg caggaccact ttgcggactt tatggacttt
     1201 ctattttaat tgttcaaaag gtaaatcctg ctccaaaaga taaagaaagt gatgaataaa
     1261 gacttacttc tttcaagcta tgattacact ctagctaatg aactcatagc caactatcct
     1321 acaaatccaa aagaagatgc taggcttttg gtttttgatc gcaaaaacaa agaaattttt
     1381 catactactt ttaaaaattt acaagacttt ttacccaact gcgcgatttt tttcaatgat
     1441 accaaagtta ttaaagcaag aatttatggc aataaagcaa gcggaggaaa aatagagctt
     1501 ttcttgcatc aacctttttt aaattctcac aatccgcttt ttctagctca aattaaaggg
     1561 cgcattaaaa aagatgaaat cttatatttt aaagaggatt taaaagtacg cgttgtagaa
     1621 cttttaaatg atggtcttcg aaaagttcaa ttttttcaaa atgataaaac cttagacacc
     1681 tcaaatcttt acaacctgct tgacaagata ggacatatac ccttgcctcc ttatattaaa
     1741 agggaggatg aaaaaagtga tttgaaagat tatcaaagta tctttgcaaa aaatttaggc
     1801 gcagtggctg ctccgactgc aagtttacat tttagtgaga ctatgcttga aaatttaaga
     1861 aaaaaacacg aaatttatca tttaaccttg catgtaggag ctggaacctt taaaagcgtg
     1921 gaatgtgaaa atatacaaga gcataaaatg catagcgaat tttttaatat tccgcagcaa
     1981 gcatgtgaaa ttatagattc taaacaagct attttaggcg taggaacaac ggtaacaaga
     2041 accatagaat attatacaag aactaaaaca aaaaatggtt tttgtgatct ttttttacac
     2101 ccgcaaaatc cacctataag acaaaatcat cttttaacca attttcattt accaaaatct
     2161 actcttatca tgctagtttc agcttttatc ggtagagaac agtgtttaaa actttatgaa
     2221 ctcgccataa aagaaaaata tcgcttttac tcttatggcg atgcgatgct aatcttgtga
     2281 tttttcttta aaatttattg ctattttagc ttgaagtttt agccaatctt tttgaagcat
     2341 gataggaaaa cctccataaa cacgcccgcc ttctaaattt ttactcacac cgcctcttgc
     2401 agctatagtg ctaaaatcgc ctatttttaa atgtccactc gttgcacttt gaccacccat
     2461 aataacattg cgtcctaact cacttgaacc tgaaattcca gtttgtgcca caatgataca
     2521 attttgacct atattgcaat tatgtccgat ttgaactaga ttatctacct tagtacctgc
     2581 tttgataata gtactatcaa aaactgctct atctatagtt gtacaagccc ccacttctac
     2641 aaaatcttct aaaaccacgt tgccattatg ataaatttta taatgttcgc cgtttttatt
     2701 gtgcgcataa ccaaaaccgt cacttcctat tacacaatta gcaagcagat gacatttttt
     2761 accgatttta gtatcattat aaatcactac attaggatga ataatactct catcaccaat
     2821 gctgacatta tcgcctatat aagctcctgc cataatgatt acattttcac cgatatttac
     2881 attatcacct atataaacat taggcatgat tcttgcgctt tttgcgatat tttgtacttt
     2941 ttctttagct gtgcttatca aaggtttagc aaaaagcttg cttaaaaaag caaaactcaa
     3001 atgtggactt tgagtaatca aagctttagt atctttaggt actaaatttt catattcttt
     3061 agatactaaa atagcagcag ctcctgtgtg aggtatatct ttggtatttt tctcaccatc
     3121 acaataagta agctctgtaa aatttgcttt caataaagaa tttaaagcac tgatttctat
     3181 atcctcgcct ttatattcca agcttaaaaa ttctgctatt tcacttaatt tcatttaatc
     3241 tccatcaaaa cagatccact gcgaactata tcactaggat tgtatttttt aattgttttt
     3301 aaaaaattat caatgcgatt tgcatcatca gcaaccatta aaaacaaaaa attctcattg
     3361 ctatttgcaa tagtaccatt ataagctttc aaaacggcat caagtccacc taaattttca
     3421 tttaaaggaa ttttcactaa agccatttct ttgtcaataa attcttcact ttctatcact
     3481 ttataagtag gaatgagctt atgaagttgt ttgactatct gctcaaaagt tctttcattt
     3541 cctgaagtga ctatattaat acgagaaaat tctttatttt ccaaaggtgc tactgtaagc
     3601 gagtcaatat tataacctct tcctgaaaaa agtcctacta tacgagataa aaccccatgc
     3661 tcatttaaaa caattaccga taaaaccctt ctcattgtct atcctttgcc tttggtaaaa
     3721 tcatattata aatcgcacct cctgcaggca ccataggtaa aacatcttca aagcgatcaa
     3781 tttttacatt taaaagagag gttttatcac tttttaaagc ttggctaaaa gcttgaatga
     3841 attcttcttt gtttgaaatt tcataacctt cacaaccaaa accttgagct attttgataa
     3901 aatcaggctg agtgcttaaa tcagtttgtg aaaaatgctc tttataaaac atactttgcc
     3961 attgtcttac catacctaaa aaggcattat ttaaaataat atttatagct tttataccat
     4021 actcataagc agtcataagc tcttggatat tcattaaaac cgatccatca cctacgaaat
     4081 taatcaccac ttcttcaccc acagcaagct ttgcacccaa agcagcaggt aaagaatatc
     4141 ccatagttcc ttgccctcca cttgttgcaa gttgtcttgg ataattaaaa ggataaaact
     4201 gcgctaccca catttgatgc tgacccacat cggtaataat ccttgcatct ggagccattt
     4261 tcgcacattc ttcaatcacc cattgcggtt ttaaaatctc attgctatct tcataagaaa
     4321 gcggataaag ttcattataa cgctttaaag tttcatgcca ttctttaaaa gttgtgttga
     4381 aattttcctt tttaagctct tctaaaagct ctttaagaac ttctttaata tctcctacta
     4441 taggataatg cgcattgata atctttgaaa tagaactagg atcaatatca acatgaacta
     4501 tagtcgcatg tttagcaaat tcacttgttt ttcctgtaat cctatcatca aatctcgctc
     4561 ctacactcac aagcaaatca cactcactta aagccatatt agcagcatag cttccatgca
     4621 tgcctgccat tttaagatta aaaacatcat cacttcttaa agttccaagc gccatcaaag
     4681 tttcaactgc tggaattttt gtaaatttta taagctctct gatttgctcg cttgcattag
     4741 aactgatgca acctccacct aagtaaaaca aaggtctttt tgcttctttt aaaagctctg
     4801 caaatttttt aatttgcttt gagttaccct tataaacggg cttataagtc ttcatggaaa
     4861 tttctttaga gtattcccaa agtcccaaag ttgcacttac gtcttttggc acatctatat
     4921 gcacaggccc aggtctacca cttcttgcta tataaaaagc ctcttttaaa atgcgtggaa
     4981 actcttctat acaagtaact aaataattat gctttacaca aggtcttgaa atgcctactg
     5041 catcaatttc ttgaaaagca tctgtaccaa taagagaatt tgccacctgc cctgaaatca
     5101 acaccaaagg gatagaatcg ctataagccg tagctagacc tgtaatagta tttgtaaaac
     5161 ctggtccgct tgtaactata gctacgccca cttctccgct cattcttgcg taagcatcag
     5221 cagcatgcaa agccgcttgt tcatgacgca ctaaaatatg tttaaaatac ttttgattgt
     5281 aaatttcatc ataaatatta agcgcagcgc ctccaggata accaaaaaca attttaacat
     5341 tttcttcttt taaagcctcg caaatcattg ccgaaccgct taactctttc ataataacac
     5401 tccaaaaaat tattgtaaaa gctctttaag tgctaaatta agtcttttgc catcaacact
     5461 cgcacctaat tttattttag cttctttcat taccaaacct tgttctttta gtgaacttac
     5521 gcccaattct tctataagtt gttttaaggc taaagttaac tcctcatcac ttagttgttt
     5581 aggcagataa atttcaaaaa gacttatttc attttgttct ttttgtgcta aatcttcacg
     5641 atttgcctta agataaagtt cgattacgtc tttgcgtttt ttgatttcac ttgcaatgat
     5701 tttataaatt ctttcattat ccaactctat tctttcatcc acttctattt gcttaaaagc
     5761 tgcatttaga gttcttaaac tatctctttt aaaatcatct ttttgtttca ttgcctcttt
     5821 gatatcgttt aaaatttgtt cttttaaagt catttttttc ctttttagtt aaaattacaa
     5881 gctttaagat ttaaaccaaa accttctaaa cctatatagt ctttatcaca actttgagat
     5941 aaaagtttaa tttcttctat accaaaatat cttaaaatct gtgctcctat accatagttt
     6001 ttgtattgag tagtactgga tttttctcct tgcatgaaaa ctataacgcc accattttca
     6061 ctaagaaatt tgatttgctc taaaagtttt gaaaatttat ctgaagttaa aagctcaaaa
     6121 tcactaccac tgatatgaaa tttaacattt tcacattttt tgatatcttt aaagcaaaaa
     6181 gctatgtgtt gggtttgatt atgatcacta aagataaatt tttctgcttt aaagcctgct
     6241 aaaacacttt gacttttttc ttcaagctta ataaggcttt catgttttag gcgatattct
     6301 ataagatcgc ttacggctat catatttaaa tcatgttttt ggcaaaaaat ttctagatct
     6361 tctcttcttg ccatatctcc attatctttt acaatttcac aaatcacaca agcacctttt
     6421 aatcctgcta atttacaaag atcaaccgtg ccttctgtat gacctgtgcg ttctaaaacc
     6481 ccaccttttt ttgcgattaa aggattgata tgtcctggtc ttacaaaatc actcgcttta
     6541 gcattatcat cggcaaaaat ttgtatagtc atatttcttt cataggcgct aactcccgtt
     6601 gtagcatctt ttgcatctac ggttatagta aaagcagttt cgtggtttga agtattttta
     6661 ggcaccatta aaggaagttc aaattttttt gccaaagttt catctaaggc tacacaaacc
     6721 acaccacgag cttcttttat catgaaattt actttttctt gagtgctaaa ttgcgcagga
     6781 aagattaaat cgccttcatt ttctctatct tctgcatcta ccataacaag catttttcct
     6841 gcttgtaaat ccttaatcgc ttgttctacg ctaacaaatt tcatttttat ttccttaaaa
     6901 tttttaaaat tataacttaa attgcttgac aaataaatta aaattcatta taatcacact
     6961 tttaaaaaat atttattggg gtatcgccaa gcggtaaggc aacaggtttt ggtcctgtca
     7021 ttcaggggtt cgaat
//
LOCUS       DAPIWQ010000093         6779 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.094, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000093 DAPIWQ010000000
VERSION     DAPIWQ010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6779)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6779)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6779
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.094"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..453
                     /locus_tag="RJ267_001282"
     CDS             <1..453
                     /locus_tag="RJ267_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389133.1"
                     /translation="IYNNPKSGNKNLSKLEILTPDTSKEEIITAFSTLGTVSSDTQAV
                     PSSFMPFIVTAYAQNTNATNNKLILENGELSSVYFCKPSIGDCGVPNNSQKGDRFKYL
                     ITAAFTDRGEGFNNQTILKENSYINNGCRKYLHLALKWSSLYFRICSF"
     gene            383..2311
                     /locus_tag="RJ267_001283"
     CDS             383..2311
                     /locus_tag="RJ267_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389134.1"
                     /translation="MGVENIYTLPLNGVPYISGSVAFDGEAKDNKLILESNTKIDLHN
                     SQYFSDEEGKDIYDERITRLMGAFGINSNLQNNKVLIDSANIVLHGPDGEYTARSTFE
                     ILGALADVNNLKKYNVSKNSVIIKNLNLDLMVNSQNKITFYDAVLFGEIYGGRTLQGN
                     AEKNSIEVYHFNSLDHLNKNIKTHASLNLYGGYSNDGEANGNKIVFRLKKPLKISDNF
                     YGKNYYNLYGCFATEGANFNVFDIQNDLTYEKVPQNYSDKFTVYAARTLSGKANNNTL
                     SIKDSVISLPLYAFITSETTLDGIDYIADESNNNEVNFENIKSSKNLSLMINAKNVSN
                     NKINYNLIQSLTEASSLGKGSKIILKATQNANNNLIKLKDCSSAAVESSCIIKADKES
                     AFNKIINNNTAFSTASDKRQGYVGLIAGVSANSHDNIMELVNLNIDEYKNQDAIFLAP
                     SGTSDISNFKSYNNTLYLGGELNFFKDVNIDLLSGSVFHEVNKKGKIITQILPHQEDF
                     SKNNRLIIDTQDVKSEVVNNFENFTFILPNKIKNPILTIEKLINLPANGSMEILTKNK
                     PTKGKYILIQSDVGIYDGDNGLLNQQELENLLEKMKNNKNKFNYNKIEKLAKSTLKNV
                     NFSFEVSDDAKIIYINIL"
     gene            2323..3778
                     /locus_tag="RJ267_001284"
                     /pseudo
     CDS             2323..3778
                     /locus_tag="RJ267_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874703.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
     gene            3775..3939
                     /locus_tag="RJ267_001285"
     CDS             3775..3939
                     /locus_tag="RJ267_001285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389135.1"
                     /translation="MSAGNYKTQAGKVIGDPGISVNNNFSNIYVYHNLENGYIDEGQN
                     FLSLCNIIMK"
     gene            3918..4844
                     /locus_tag="RJ267_001286"
     CDS             3918..4844
                     /locus_tag="RJ267_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389136.1"
                     /translation="MQYNNEVTGKKDFDSAVRKKFNDIKYLDNNSYAFADSFTKATDA
                     VKLSKDDFDPKLLQRILDDLMNGKYTYDFDTKTWTYTDSKGVVGKDEASEITQSLNFL
                     NAFKDTGVEQEFLKLWQGSQEQNYKNYTNLYEKWTQKKTAMDKIKTGEGYFASFKEEL
                     QKYQEALAQLDKENKNYEKIKESGLVSDETLRAIYEKLLEQKEALEKQFADLSGNEGF
                     RYKLENEILNSQGFSIEGKDVDGKVYTGNFNFKGKLASLPEKPNISIYEPDKQGGEDP
                     DKPSVLPPEIPEKVVEAPIKIQTEVDAKKRRR"
     gene            4957..6526
                     /locus_tag="RJ267_001287"
                     /pseudo
     CDS             4957..6526
                     /locus_tag="RJ267_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856720.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
BASE COUNT         2622 a          811 c         1194 g         2152 t
ORIGIN      
        1 atttataata accctaaatc tggaaataaa aatttatcca agcttgaaat tttaactccg
       61 gatacttcaa aagaagagat cataacagct tttagcactt taggaaccgt atcttcagat
      121 actcaagccg ttcctagttc ttttatgcct tttattgtaa cagcttatgc gcaaaataca
      181 aatgcaacaa ataataaact tatattagaa aatggagaat tatcttctgt gtatttttgc
      241 aaaccaagca taggggattg tggagtacct aataattctc aaaaaggcga tcgttttaag
      301 tatttaatta ctgcggcgtt tactgacagg ggggagggat ttaacaatca aaccatttta
      361 aaagaaaact cctatatcaa taatgggtgt agaaaatatc tacaccttgc ccttaaatgg
      421 agttccttat atttcaggat ctgtagcttt tgatggtgaa gctaaagaca ataaattaat
      481 cttagagtca aatacaaaaa ttgaccttca taattcccag tatttttcag atgaagaagg
      541 taaggatatt tatgatgaaa gaattactcg tttaatggga gcttttggca taaattctaa
      601 tttacaaaac aataaagttc ttatcgattc agccaatatc gtccttcatg ggccagatgg
      661 tgagtataca gctcgttcga cctttgaaat tttaggtgct ttagctgatg taaataatct
      721 taaaaaatac aatgtaagta aaaattctgt aataattaaa aatttaaatt tagatttaat
      781 ggtaaattcg caaaataaaa taacttttta tgatgctgtt ttatttggag aaatttacgg
      841 tggaagaaca ttacagggta atgcagagaa aaattctata gaagtttatc attttaactc
      901 attagatcat cttaataaaa acattaaaac acatgcatcg ttaaacctct atggtgggta
      961 ttctaatgat ggtgaagcta atggaaataa aattgtattt cgtcttaaaa aacctttaaa
     1021 aatcagtgat aatttttatg gaaaaaatta ttacaatctt tacggatgtt ttgctacaga
     1081 gggtgcgaat tttaatgttt ttgatataca aaatgattta acctatgaaa aagttccaca
     1141 aaattattct gataaattta ccgtatatgc ggcaagaact ttaagtggaa aagcaaataa
     1201 taatacctta agtataaaag attctgttat ttcattgcct ttatatgctt ttattacaag
     1261 tgaaactacg ctagatggta tagactatat cgccgatgaa tcaaacaata atgaagtaaa
     1321 ttttgaaaat attaaatcat ctaaaaattt aagtttgatg atcaatgcta aaaatgtttc
     1381 aaataataaa ataaattata atctcattca gagtttaacc gaagcgagtt ctttaggaaa
     1441 gggctcaaaa attattttaa aagcaactca aaatgcaaac aacaatctta taaagcttaa
     1501 agattgttct tcggctgccg tggaaagttc gtgcatcata aaagcagata aagaaagtgc
     1561 ttttaataaa atcatcaaca acaacacagc ttttagtact gcctcagata aaagacaagg
     1621 ttatgtgggg ttgatagctg gagtgtctgc aaattctcat gataatatca tggagcttgt
     1681 taatttaaat atagatgagt ataaaaatca agatgctata tttttagctc catctggaac
     1741 ttcggatatt tcaaatttta aatcttataa caatacttta tatttaggtg gagagttgaa
     1801 tttctttaaa gatgtaaata tcgatttgct ttctggttct gtttttcatg aagtaaataa
     1861 aaaaggtaaa ataatcactc aaattctacc gcatcaagaa gatttttcta aaaacaatcg
     1921 tttgattata gatactcaag atgtcaaatc agaagtggta aataactttg aaaattttac
     1981 ttttatttta ccaaataaaa taaaaaatcc tatcttgact atagaaaaac ttatcaatct
     2041 tcctgcaaat ggaagtatgg aaattcttac taaaaataaa ccaacaaaag gaaaatatat
     2101 tctcatacaa agtgatgttg gaatttatga tggtgacaat ggattgttaa atcaacaaga
     2161 attagaaaat ttgttagaaa aaatgaaaaa taataaaaat aaatttaatt acaacaagat
     2221 agaaaagttg gctaaaagta cattgaaaaa tgtaaatttt agctttgaag tttcagatga
     2281 tgcaaaaata atttatatca acatacttta aaggagagta acatgaaaaa gatgagtaaa
     2341 catatagttt tatcatttgc ggtgagttct ttgctctttt ctcaagctta tgctttacta
     2401 agtgggggta aatttactca tggtacaagt gggactatcc atacctctgg caatactgta
     2461 acgattacag gaaaaggaca aaatcatgtt atccaatggg gtggcggttt taatatagga
     2521 caaaatgaaa gtgtaaattt taacggcaaa aatcaaaact acctaaacat tgcttatcaa
     2581 aaagatgctt ctaagataga cggagcttta aatagaggga ataacaatat ctttttagtt
     2641 aatcctatgg gagttttgat tggcaaaaca ggaactatta ctgcgggaaa atttgtagct
     2701 agcacaacag ctttaagtga tgataatgtc aaaacttttt tagagaaagg agctagtttc
     2761 tctccggcat ttgatgtaag caaacaagga aatattataa atcttggaaa gatcaatgca
     2821 gataatattg ttttaatagg aaataaggtt gaaatcaata aaggaaaaat tactttggat
     2881 gtattaaaac ttgaaggtaa taaagtttat gttgatgctg gagtggtaaa agatacaaaa
     2941 aatatcgtag ccaaagcaga gcaagaagct atcattcaac aaagcataac aagttttgaa
     3001 gaagatggag ctttattggg taattctagt agtaaattta gttttgatga tagtagtaaa
     3061 gttaaaaact ggactaaata tggaagtatt gcggatgcaa cagaatggaa taaatttgct
     3121 gatttttgga atgtaaataa agaaaaattt agaacagctt ttgatcattt tcgtttgatt
     3181 gatgatattg attttagtgg cgtgaaaaca tacatagtag gtgataatac aagcaatgct
     3241 tttgctaaat ctttcgatgg ttctggttat gctttaaaaa atgttaatat taattcatca
     3301 aatcaatatg taggaatttt tggagttgtt caaaatagct atataagaaa ctttaatatt
     3361 caaggattga aaattgcttc aactggttat gatgcttagt tggaggtata gtagggcaaa
     3421 atattgcaaa cagttatacg ggttttgaaa atgtgactgt taatgatctc gttattaata
     3481 cagctgtaaa tactaaagtt ggcggaataa taggctgggg aaatggtagt ggagggaata
     3541 acactatcaa ttttacaaat gttgctatta ataatataag tatagtagca aagaaggttc
     3601 ttatgtgggt ggcataggca gacaaattga tggtggtaat tttaataatg ttgtggttaa
     3661 tgacatagaa aaacttataa cttctgggaa tgatagtaaa acaggaggat ttactggaaa
     3721 agttggaaat ttaaagatta ataatgctta cttattttat aaaatggagc aattttgagt
     3781 gctggaaact ataaaacaca agctggaaaa gttattggtg atcctggaat tagtgtaaat
     3841 aataatttta gtaatattta tgtttatcat aatttagaaa atggttacat tgatgaagga
     3901 cagaattttt taagtctgtg caatataata atgaagtaac aggaaaaaaa gattttgata
     3961 gtgctgtaag aaagaaattt aacgatataa aatatcttga taataattct tatgcttttg
     4021 ctgattcttt taccaaggca acagatgctg tgaaattatc caaagacgac tttgacccta
     4081 aattgcttca aagaatttta gatgatttga tgaatggaaa atacacttat gattttgata
     4141 ccaaaacttg gacttacaca gatagtaagg gtgtggtagg aaaagatgag gctagtgaaa
     4201 tcactcaaag tttaaatttc ttaaatgcgt ttaaagatac gggagtagaa caagaatttt
     4261 taaagttatg gcaaggttcg caagaacaaa attataaaaa ttataccaat ctttatgaaa
     4321 aatggacgca aaagaaaact gctatggata aaatcaaaac cggcgaaggt tatttcgcta
     4381 gttttaaaga agaattacaa aaataccaag aagccttagc tcaacttgac aaagaaaata
     4441 aaaactatga aaaaatcaaa gaatcaggct tagttagcga tgaaacatta agggctatat
     4501 atgaaaaact tttagaacaa aaagaagctc ttgaaaagca gtttgcggat cttagtggaa
     4561 atgaaggatt tcgctataag cttgaaaatg aaattctaaa ttctcaaggt ttttctatag
     4621 aaggtaaaga tgtagatggt aaagtataca ctggaaattt taattttaaa ggaaaattag
     4681 cctcattgcc agaaaaacca aatatatcta tctatgagcc agataaacaa gggggtgaag
     4741 atccagacaa accttctgta ttgccgcctg aaattcctga aaaggttgta gaagctccta
     4801 taaaaattca aaccgaagta gacgcaaaaa aaagaagaag atgatgatca agtggaaata
     4861 ggagaagcag atgctagaag tagtggtttg cgttgtattg taagtgataa ttttaagaca
     4921 atgaatattt gtgtaaatgc aaaataggaa ataaaaatga gaaaaatttt agttgtttta
     4981 gtcttattgc aagtattttc acatgctgaa gagctaaata ataataaaat aagagagctt
     5041 atagaaagct ctcctgaagc aaatgaacca caaaataaaa atttaaaaaa tacattaaaa
     5101 aatcaaaaaa gccctgtaaa tttcaaagag caaaatacta caaatattac aaattcacaa
     5161 actgatcaaa atgaagctaa ggtttttgta agagagtatg ttttgcatat cgataataaa
     5221 gatttgacat ttaaaaaatt aagaattagc gaaaaataaa ttcaagatgc aatagctgaa
     5281 tatcgcaacc aagaattaag cttacaaaat ttaaaagata taacaaacat tatagcttat
     5341 tattgtcaat taagtggcca tccttcggca actgcttata taccaccgca agatttaagt
     5401 tctaacaaag tgcaaattaa catagctttt ggaactttat aggaaaagta attattaaaa
     5461 acaactcagg tgtcagagat tatgctttag agagtaaatt gaacaaaaat cttaaaggga
     5521 aagttatcac aactaaaaat gtggaaaatg aaatttataa aatcaatgaa atatacggaa
     5581 tccaaaccaa tgctaattta caatcaggtg atggttgtgg agaaagcgat gttattatag
     5641 aagtaaacaa aggtgagata gtgtaacttt aactttatat tctaacaact atgggactaa
     5701 agaaacaggt cgttttagag caggaatgag tcaaagttta aacaatatag caagataagg
     5761 ggataactta aatttttatc ttcaagatag tgatgaaaat caaacagatt atgggattaa
     5821 ttatagtact tttataggga atttaaaaat tactccattt gcaactcaag gacattatgt
     5881 tcctggcaga atttatagaa atcttagttt ttatagggac tctatgaatg ttggagtaaa
     5941 tttttcttat cctgtgtttt tatatactga gtattcttta tatcttgttt cgggttttac
     6001 tcataaaaag attaaagatt attatcttga tggtttagta agcaatgaaa aagcgagaaa
     6061 tagtgtaaat ttgggcatag aaagaactta tagaggtttg gagaataatg tcctaagtta
     6121 tactttaaat tttatatatg gtaatgttga aaatgatggt gatttttctg gatttaatgg
     6181 agtaaattta ggaaattttg gaaaaatgaa tttaaattta agcaacaaat atcaattcta
     6241 agaacgctta actcacattt ttcaactcaa ttatcaaaaa gttatcagcg atgctgtttt
     6301 agatagtagt gaatccgtat ctttaggtag accttgtggt gtatgtgttt gtttagaagg
     6361 tgagggaagt gcggataatg ttgtttctgg cgccttggga ataagatttc aaacaccttt
     6421 agaagggctt tactcgactc ctttttatga tatagggtat tcttggtatg aaaataaaga
     6481 atatcaaagt gaaaatcatt atcttatgga tgcaatgggt atataaatac tctatacaag
     6541 aagtgctaat ttttatgtaa aaatggatgc tgcaagagct gttcatcagt ttaaacacga
     6601 tggagaacat cgagcaagag tttatgcaag cctagaaaaa tacttttaac tttggggtga
     6661 ttggaaaatc cccccccccg cccattttta aacccaccaa atatttatat aaatacttac
     6721 acaaatattt atactattta atcctttgtt taatacactt ttaagtttaa ttggttata
//
LOCUS       DAPIWQ010000094         6752 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.095, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000094 DAPIWQ010000000
VERSION     DAPIWQ010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6752
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.095"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            61..345
                     /locus_tag="RJ267_001288"
     CDS             61..345
                     /locus_tag="RJ267_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HDV7389137.1"
                     /translation="MAVKITDICIACGSCIDECPVNAIVDDTNNPEGEDRYYVYANKC
                     VECVGHNDQPACASACPTDGCIVWSAVESGQPSRDNIGADMRSGDTPVFA"
     gene            458..871
                     /gene="ndk"
                     /locus_tag="RJ267_001289"
     CDS             458..871
                     /gene="ndk"
                     /locus_tag="RJ267_001289"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HDV7389138.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AENFYAVHKERPFFKDLVEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAKAGTIR
                     ADFAESIDANAVHGSDSLENAKIEIEFFFKPNEIC"
     gene            872..1225
                     /locus_tag="RJ267_001290"
     CDS             872..1225
                     /locus_tag="RJ267_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389139.1"
                     /translation="MKIPFSKINTKEYPFKLNLENIIFEGNLVKINPKLVKINAIMQG
                     FIYRPCDSCGTELELEIKENLELFASDGIFKDEANELSNTIEFFDGHIDLIEVAISEL
                     EAYLSDYFYCINCNN"
     gene            1249..1395
                     /gene="rpmF"
                     /locus_tag="RJ267_001291"
     CDS             1249..1395
                     /gene="rpmF"
                     /locus_tag="RJ267_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HDV7389140.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPT
                     TKEY"
     gene            1401..2387
                     /gene="plsX"
                     /locus_tag="RJ267_001292"
     CDS             1401..2387
                     /gene="plsX"
                     /locus_tag="RJ267_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HDV7389141.1"
                     /translation="MINIAIDAMGGDFGEKPIIEGVLKALETKPFNAILVGNSKILKP
                     LIPKKLEQYIQYEEASEIFSMNGNATDALKNKETTIYKAINLLKEKKVDAVVSAGHSG
                     ASMSLATLKLGRLKGISRPAIATLMPNIVNKTLLLDVGANTDCKAENLFQFAIMGEVY
                     AREIMQIQKPRLALLSNGEEECKGNELTKESHQLMKKIPNFIGNAEGRDIFNGEIDVL
                     VCDGFDGNVILKACEGVATAIFQLLKNEVKQSFISKIGALLMKPSFKKLKKHTDWQEY
                     GGAPLLGVNGCVIISHGKSDSRAIKNAIFQAINFSQSHINKFIENELGKYNA"
     gene            2380..3354
                     /locus_tag="RJ267_001293"
     CDS             2380..3354
                     /locus_tag="RJ267_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HDV7389142.1"
                     /translation="MLKASLKSIASYIPEKILSNADLEKMVDTTDEWITRRTGIKERR
                     IASENENTSDLGTKAALKAIERANLKPEDIDAILVATLSPDYFTMPSTACKIASNLGL
                     VNISAFDISAACSGFIYLLEQAKALVESGLKKNVLIIGAEKTSSIMDYNDRSICILFG
                     DGAGAGVVSLDNENHILDVHTASNGNYGDLLMTQRSQKSSLCQTLSMQMKGNEVFKIA
                     VNTLSNDVVEILAKNNILAQEIDLFIPHQANLRIIKAVQEKLNLSDEKCVITVQKYGN
                     TSAASIPMAMNDAYEEGRLKKGNLILLDAFGGGFTWGSALLKFGGENF"
     gene            complement(3351..3701)
                     /locus_tag="RJ267_001294"
     CDS             complement(3351..3701)
                     /locus_tag="RJ267_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDV7389143.1"
                     /translation="MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALA
                     ELDALFEKIGANKGDLIQIQIWLANMQDFDAMNEIYDAWIKNYPKPVRACVGSALAEG
                     YLVEIQAFGKLREN"
     gene            complement(3698..4774)
                     /gene="serC"
                     /locus_tag="RJ267_001295"
     CDS             complement(3698..4774)
                     /gene="serC"
                     /locus_tag="RJ267_001295"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HDV7389144.1"
                     /translation="MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKV
                     FEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLALNGVCEYANTGVWTK
                     KAIKEAQILGVNVKTVASSEESNFDHIPRVEFSDNADYAYICSNNTIYGTQYQNYPKT
                     KTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS
                     MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDL
                     SNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASI
                     YNALNLDQVKTLCEFMKEFQGKYA"
     gene            complement(4784..5947)
                     /locus_tag="RJ267_001296"
     CDS             complement(4784..5947)
                     /locus_tag="RJ267_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HDV7389145.1"
                     /translation="MTPTELNLKAKALLETHFDDIVLSGEISKITLHGSGHWYFDLKD
                     ERSSIACAMFKGANLKVGFKPAVGDFLELCGSVSLYPESGRYQFIATSMKKAGFGDLE
                     AQFLALKERLQKEGLFDPRFKKSLPKFPKKVGIITSKTSAALQDMLKLIHQKEYFLAK
                     IYIFDALTQGNNAPFSLIQALKKADDMDLDVLIIARGGGSREDLFCFNDENLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLFYSKLDIEQSLDLMEEKLMQLW
                     NYKIQNYENLLLNLSKFFKFNSLPKIIDEKIKQSHNIEKQLNHLLANQMRYNELKLDK
                     LQNAYLQHENFFNKSKKFICIRKNGKIANLEDLKSDDIVILSSQTSQKEAKIL"
     gene            complement(5944..6651)
                     /gene="ubiE"
                     /locus_tag="RJ267_001297"
     CDS             complement(5944..6651)
                     /gene="ubiE"
                     /locus_tag="RJ267_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HDV7389146.1"
                     /translation="MQKQEKIIEMFNQIAPTYDKANRILSFGADVAWRKKACQRVMSL
                     YLKKDLKIADIACGTGDMIEIWQESALKMEKNILNIKGIDPSSGMLNVAKEKFPNVEF
                     IKAGAQNLPLESQSLDILSISYGIRNVVERQKALSEFARVLQKDGILVVLEFTKREKG
                     GFIAACRDFYLKNILPSIGGIISKNKSAYEYLPNSIEGFLSKKEFILELKNAGFEMLD
                     YKSFSFGVSSMFIAKKL"
BASE COUNT         2356 a         1089 c          993 g         2314 t
ORIGIN      
        1 ctttatttaa gaattttatg ctaaaatctt ttaaatctta atattaaata aggagaaaaa
       61 atggctgtaa aaattacaga tatatgtatt gcttgtggtt cttgtattga tgagtgtcca
      121 gtgaatgcta tcgttgatga tactaacaat ccagaaggtg aagatagata ttatgtctat
      181 gcaaacaaat gcgttgaatg cgtaggacat aatgatcaac cagcttgtgc tagtgcttgc
      241 ccaacagatg gatgtatagt ttggagtgct gtagaatcag gacaaccaag tcgtgataat
      301 attggtgctg atatgagaag tggggacact ccagtttttg cataatttta aaaaattaaa
      361 aagctagaga ttcctagctt tttaatttaa tttaactttc tttaaacaaa ttcaagtata
      421 attttaagct ttattaaaat aaggagttat tacaaagatg gaaaaaactt tatctataat
      481 taaacctgat gctgttaaaa aaggtgttat aggaaaaatt ttagatcgtt ttgaaagcaa
      541 tggattaaga atcgctgcaa tgaaaaaagt tcaacttagt aaagaacaag ctgaaaattt
      601 ttatgctgtt cataaagaaa gacctttttt taaagacttg gttgaattta tgattagcgg
      661 tcctgttgtt gtttctatac tagaaggaga aggtgctgta ttgaaaaata gagatttaat
      721 gggagcaaca aatcctaaag aagctaaagc aggaacaatt agggctgatt ttgctgagag
      781 tattgacgct aatgctgttc atggaagcga tagcttagaa aatgcaaaaa tagaaattga
      841 atttttcttt aaaccaaatg aaatttgcta aatgaaaatc cctttttcta agattaatac
      901 aaaggaatat ccttttaaac ttaatcttga aaatattatt tttgagggaa atttagtaaa
      961 aataaatcct aagcttgtta aaataaatgc tattatgcaa ggttttatct atagaccttg
     1021 tgatagttgt ggaactgagt tagaacttga aattaaagaa aatttagaac tttttgcaag
     1081 tgatggtatt tttaaagatg aagcaaacga attgagcaat actatagaat ttttcgatgg
     1141 acatattgat ttaatagaag ttgctatcag cgagcttgaa gcttatttga gtgattattt
     1201 ttattgcata aattgcaata attaattaaa ttttataaag gagaaaaaat ggcagtacca
     1261 aagagaagag tgagcaaaac tcgtgcagct aaacgcagaa ctcactataa agttagtctt
     1321 cctatgccta taaaagacaa agatggaagc tacaaaatgc ctcaccgtgc gaatccaaca
     1381 actaaggaat attaaaatca atgattaaca ttgccattga tgcaatgggt ggtgattttg
     1441 gagaaaaacc cattatagaa ggcgttttaa aggcactaga aacaaaacct tttaacgcta
     1501 tcttagtggg aaattctaaa attctaaaac ctttaatacc aaaaaaatta gaacaatata
     1561 tacaatacga agaagctagt gaaatttttt cgatgaatgg aaatgccaca gatgctttaa
     1621 aaaataaaga aacaaccata tacaaagcta ttaatttatt aaaagaaaaa aaagtagatg
     1681 ctgtagtttc agcgggtcat agtggagcaa gtatgtcttt ggctacctta aagcttggaa
     1741 gacttaaagg tatttcaaga cctgctattg ccactttaat gccaaatatc gttaacaaaa
     1801 ctttactttt ggatgttgga gctaatacag attgtaaagc tgaaaattta tttcaatttg
     1861 ccataatggg tgaagtttat gctagagaaa tcatgcaaat tcaaaaacca cgccttgctt
     1921 tactttctaa tggtgaagaa gaatgcaaag gtaatgaact taccaaagaa agtcatcagc
     1981 ttatgaaaaa aattccaaat tttataggta atgctgaagg tagagatatt ttcaatggtg
     2041 aaatagatgt tttagtctgc gatggttttg atggaaatgt tatcttaaag gcttgtgaag
     2101 gtgtggcaac agctattttt caacttctaa aaaacgaagt aaagcaatct tttatttcta
     2161 aaataggtgc tttacttatg aagccatctt ttaaaaaatt aaaaaaacac acagattggc
     2221 aagaatatgg cggagcaccc cttcttggag ttaatggctg cgtgatcata agtcatggaa
     2281 aaagcgattc tagagctatt aaaaatgcaa tttttcaagc tataaatttt agccaatctc
     2341 atatcaataa atttatagaa aatgaacttg ggaaatacaa tgcttaaagc cagtcttaaa
     2401 agtatagctt cttatattcc agaaaaaatt ttaagcaatg ctgatcttga aaaaatggta
     2461 gataccaccg atgaatggat cactagacgc acaggtatta aagaaaggcg cattgctagt
     2521 gaaaatgaaa atactagcga tttgggcaca aaagctgcat taaaagccat agaaagagca
     2581 aatttaaaac ctgaagatat tgatgcgatt cttgtagcta ctttaagtcc tgattatttt
     2641 actatgcctt caacggcttg taaaattgct tcaaatttag gacttgtaaa tattagcgct
     2701 tttgatattt cagcagcttg ttctggtttt atctatttgc ttgaacaagc taaagcctta
     2761 gtagaaagtg gtttgaaaaa aaatgtttta atcataggag ctgaaaaaac aagttcaatt
     2821 atggattaca atgacagaag tatttgcata ctctttggag acggtgcagg tgctggagtt
     2881 gtaagtttgg ataatgaaaa tcatatcctt gatgtacata ctgcaagcaa tggtaattat
     2941 ggagatcttt taatgactca aagatcgcaa aaatcaagcc tatgtcaaac actttctatg
     3001 caaatgaaag gcaatgaagt ttttaaaata gcagtaaaca cgcttagtaa tgatgttgta
     3061 gaaattttag ctaaaaataa cattttagca caagaaattg atctttttat tcctcatcaa
     3121 gctaatctac gcatcattaa agccgtccaa gaaaaactca atctaagcga tgaaaaatgt
     3181 gtgatcactg tacaaaaata tggcaatact tcagctgctt ctatacctat ggcaatgaat
     3241 gatgcctatg aagaaggtcg acttaaaaaa ggaaatctga tcttactaga tgcttttggc
     3301 ggtggtttta cttggggatc tgcgctttta aaatttggag gagagaattt ttaattctct
     3361 cttagctttc caaaagcttg aatttctacc aaataaccct ctgctaaagc acttcctaca
     3421 caagctctaa caggtttagg ataattttta atccaagcat cataaatttc attcattgca
     3481 tcaaaatctt gcatattagc taaccagatt tgaatttgaa tcaaatctcc tttgtttgcg
     3541 cctatttttt caaacaaagc atcaagttct gcaagcgctt ctttagtttg ttttttaata
     3601 tctccgctag gttcaaaagc cacttgtcct gcagtcttaa aatatttatc aaaaacaata
     3661 atttgcgaca ttctatcgca ctcatcaaaa cgctttatca tgcatatttt ccttgaaatt
     3721 ctttcataaa ttcacacaag gtttttacct gatccaaatt aagcgcatta taaatacttg
     3781 cacgaattcc tcctaaaatt ctatgtcctt taagtcctat cattccagct tcttcggctt
     3841 cctttacaaa aagaggctct aaatctttat ttttagcaat attaaaactc acattcatta
     3901 aagatctatc ctttttatct gcatgtcctt tataaaatcc attacttaaa tcaatacatt
     3961 cataaagcat agtagctttt tgagaatttt tctcatgcac tttatcaagc ccaccttgat
     4021 ttaaaagcca atccatttca agattaaaca tataaatggc aaaggttgga ggcgtgttaa
     4081 acaaggactg attctcagca tgagtcaaat aatttaacat actaggaatt tgtttatttt
     4141 tagatctttc taacatatct ttacggataa aaatacaact taaacccgaa attccagcat
     4201 ttttttgcac tccgccataa aaaagagcaa tatttgaaaa atctactttt ctagaaaaaa
     4261 aatcactcga tgcatccaca atcaaaggag ttttagtttt aggataattt tgatattgag
     4321 tgccgtaaat agtattgtta gaacaaatat aagcataatc agcattatcg ctaaattcca
     4381 ctctaggaat atgatcgaaa ttactttcct cactacttgc tacggtttta acattgacac
     4441 ctaaaatttg tgcttcttta atcgcttttt ttgtccaaac tcctgtattt gcatattcac
     4501 aaaccccatt taaagctaaa ttcataggaa tcatagcaaa ttgcaaactt gctccacctt
     4561 gtaaaaataa tacttcataa tcatcattta actcgtaaag ttttttagct ttctcttgtg
     4621 ctccaaaatg cacttcttca aatacttttg tgcggtgaga aatttccatt atagaataac
     4681 ccctaccctg ataatcacag agttcttttt gagcttgctc taaaatttct aaaggtaaag
     4741 tcgatggccc tgcactgaaa ttgatttttc tcataatcta tccttataaa atttttgctt
     4801 ctttttgaga agtttgagaa cttaaaataa cgatatcatc actcttaaga tcttctaaat
     4861 ttgctatttt accatttttt ctgatacaaa taaacttttt gcttttatta aaaaaattct
     4921 catgttgcaa ataagcattt tgcaatttat ctaattttaa ttcattataa cgcatttgat
     4981 ttgccaatag atgatttaat tgcttttcta tattatggct ttgttttatt ttttcatcta
     5041 ttatttttgg caaagaatta aatttgaaaa atttgcttaa atttaaaagc aaattttcat
     5101 aattttgtat tttataattc caaagttgca ttaatttttc ttccattaaa tccaaacttt
     5161 gctctatatc caacttagaa taaaacaaag tatctatagc agctgaaggc gttggagctc
     5221 taaaatctgc aacaaaatca ctaataacat aatcaatctc atgtcctatg gctgaaataa
     5281 taggagtttt tgctttaaaa atctctcttg ctaaattttc atcattaaaa caaaaaagat
     5341 cttccctgct tcctccacca cgtgctataa taagaacatc taaatccata tcatcggctt
     5401 tttttaaagc ttgtataaga gaaaaaggag cattatttcc ttgagttaaa gcatcaaaaa
     5461 tataaatttt tgccaaaaaa tattcttttt gatgaataag ttttaacata tcttgcaaag
     5521 cagcagaagt ttttgaagtt ataataccta cttttttagg aaattttggc aaagattttt
     5581 taaagcgtgg atcaaaaagt ccttcttttt gcaaacgctc ttttaaagcc aaaaactgtg
     5641 cttccaaatc cccaaaacct gcttttttca tactagtagc gataaattga taacgaccgc
     5701 tttcaggata taaactcaca cttccacaaa gctctaaaaa atcccccacc gctggtttaa
     5761 acccgacttt taaattagct cctttaaaca tagcacaagc aatgcttgat ctttcatctt
     5821 ttaaatcaaa ataccaatgc cctgaaccat gcaaagtaat ttttgaaatt tctccactta
     5881 aaactatatc atcaaaatgt gtttctaata aagcctttgc tttaagattt aattctgttg
     5941 gtgtcatagt ttttttgcta taaacattga actcacgcca aagctaaaac ttttataatc
     6001 aagcatttca aaaccagcat ttttaagttc taagatgaat tctttcttac ttaaaaatcc
     6061 ttcaatagag tttggcaaat actcataagc acttttattt ttactgatta tcccacctat
     6121 acttggtaaa atatttttaa gataaaaatc tctacaagct gctataaatc cacccttttc
     6181 tctttttgta aattccaaaa ctaccaaaat accatctttt tgaagtactc tagcaaattc
     6241 gcttaaggct ttttgtcttt ctacaacatt gcgaatgcca taactaatac ttaaaatatc
     6301 taaactttga ctttctaaag gtaaattttg cgcccctgct tttataaatt cgacatttgg
     6361 aaatttttct tttgcaacat ttagcatgcc actacttgga tcaatacctt taatatttaa
     6421 aatatttttt tccattttta aagcactctc ttgccaaatc tctatcatat cccctgtgcc
     6481 acaggcaata tcagcgattt ttaaatcttt ttttaaatac aaactcatca ctctttgaca
     6541 agcttttttg cgccacgcta catcagctcc aaagcttaaa attctattcg ccttatcata
     6601 agtaggtgca atttgattaa acatttctat aattttttct tgtttttgca tttttatcct
     6661 ttgtaaattt tcaaattttt acttgatttt ttaagcaatt tgcaaaattt atttttatta
     6721 ttgattattt tggaaaaaat atttttatcc ct
//
LOCUS       DAPIWQ010000095         6712 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.096, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000095 DAPIWQ010000000
VERSION     DAPIWQ010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6712)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6712)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6712
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.096"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..188
                     /locus_tag="RJ267_001298"
     CDS             <1..188
                     /locus_tag="RJ267_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389147.1"
                     /translation="FEFLNDKLKHYEKNQKSKLESLEKVLQSLKNQDANILNSFEENL
                     EKIEKLKQLEMGLLNAD"
     gene            178..2007
                     /locus_tag="RJ267_001299"
     CDS             178..2007
                     /locus_tag="RJ267_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HDV7389148.1"
                     /translation="MQINLLNDFIKAYENTYSVSFDDSFKGRIQELCKELNEPFMHAS
                     YALENELKELVFSLDKNVNIAIIGQFSSGKSSLLNLILGRDCLPTGVVPVTFKPTFLR
                     YAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTP
                     GLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DKLSAEELDNVLNYAKSVFLKYFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQLDTT
                     VLKEKFVKRKILNLCEILEDENQLFVGIFDRLLNQFQSYEKHLLLAYENFLKEIEILN
                     HQILEQLKSISERISSEIFASVKEKDAYFYKESKGFLKKDLYTRYDYKAPYISSDDAF
                     LAMFYNSDVMSKEFKKIKNELYKSFEEIKMKLKDFINILEREILLFKAEFSNIQKDHI
                     FQSDKNFSELRAFCNASDEYFLKDFKELLFKSILELDLFFEKLNLKAFTNYENATKLS
                     LAFFSRKINESRVLYELDSSEFVLFYPKKSEIYERVLNELNVYEFETLLINKPILTKI
                     AKNFLEQSQNLIQEKNKFLDLKKAELQKRRAQILNVRESIKED"
     gene            2007..2711
                     /locus_tag="RJ267_001300"
     CDS             2007..2711
                     /locus_tag="RJ267_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HDV7389149.1"
                     /translation="MRIFLTLFLFFNSLFALSELEEGLKLYEANKFDKAYEIFKSLCE
                     KDISKACFSLAFMHESARGVSKDLNQAYKFYDKACKLGLANACSNMALLLQNQGYENE
                     ALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDK
                     GELVKASVKSALAFYSKSCTLGFGEACYLLGRYNQLEKQDLTKAKRYFGMACDQKHQE
                     ACAAYKELNSKDIELY"
     gene            2847..3575
                     /locus_tag="RJ267_001301"
     CDS             2847..3575
                     /locus_tag="RJ267_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HDV7389150.1"
                     /translation="MQDNIIDRRSFFKLGLLGGSVVAASTIGGGAVLKAAELTHSHQA
                     SQGKSNKIRGRMFFQTQTEFDTLSAACERIYPKDEQGEGAIGLGVPYFIDNQLASAYG
                     YNDREYMQGPFMEGKAEQGYQTPMQRKDIFLEGVHALEENAQKRYKKSFSLLKGGDQD
                     KILSDFEKGKIQTTGFKSSYFFTLLRDMTVAGVLADPIYGGNDNKNGWRMMQYPGAQM
                     SYVDKIASDEFFNIEPMGLADMES"
     gene            3577..5298
                     /locus_tag="RJ267_001302"
     CDS             3577..5298
                     /locus_tag="RJ267_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HDV7389151.1"
                     /translation="MAEVLKKVDVVTVGAGWTGGIVAAELTKAGLNVLSLERGHMQST
                     ENFNYIHDEWRYGINYGLMQDCSKDTVTFRHDPSGLALPYRKMGSFLLGNNVGGAGVH
                     WNGWTFRFMPYDFEIQTLSKQRYGNKLGNDYTLQDWGVTYKDMEPYYDRFEKTCGVSG
                     EPNPLAEKMGAFRSSPYPQEPLENTKMLKRFESAAKSSNLHTYRLPASNSKGGYTNPD
                     GQDLAPCQYCAYCERFGCEYGAKASPLNTVIPKAMSTGKYTIRTYSNVTQILKKDGKV
                     TGVKFVDTRTMKEYIQPADIVVLTSYMFNNAKLLMVSNIGEQYDPKTGKGTLGRNYCY
                     QMNMGTTAFFDEQFNTFMGSGALGTTSDDFNGDNFDHSKEKFLHGAMIYSVQLGTRPI
                     QSAPLPAGAPTWGAEFKKALNYNFTRAITVGGQGASLPHKNNYLSLDPTYKDAFGMPL
                     LRLTYNFTDQDRALHKFITDKTAEVAKRMQGVKSIKKGAYLKDYSVVPYQSTHNTGGT
                     TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGILKYH
                     KSGKSLA"
     gene            5587..5779
                     /locus_tag="RJ267_001303"
                     /pseudo
     CDS             5587..5779
                     /locus_tag="RJ267_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857465.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(5857..6561)
                     /locus_tag="RJ267_001304"
     CDS             complement(5857..6561)
                     /locus_tag="RJ267_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389152.1"
                     /translation="MQISSSYNSYDYYSSKPSFDKTNQSDSTQKDEKNLSENKDDKEK
                     NGEQTQMVNGVELSQKEVAQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFTYTRGPD
                     NQMYATAGEVPISMQKGNTPEETIANARQIAAAAMAPADPSPQDYKVAANATKMEFEA
                     RAEAMKLKAEEAKEKEEENKEKDDKNSENSLEKTDKDSKNNDKNSNFDKDFKNLVTRT
                     YQQNSQNNDIKFSIAS"
BASE COUNT         2367 a          840 c         1216 g         2289 t
ORIGIN      
        1 tttttgagtt tttaaatgat aaattaaaac attatgaaaa aaatcaaaaa tcaaaattag
       61 aaagtcttga aaaagtttta cagagtctga aaaatcaaga tgctaatatt ttaaattctt
      121 ttgaagaaaa tttagaaaaa attgaaaaat taaaacaact tgaaatgggg cttttaaatg
      181 cagattaatc ttttaaatga ttttataaaa gcctatgaaa atacctatag cgtgagtttt
      241 gatgatagtt ttaaagggcg tattcaagag ctttgcaagg aacttaacga gccttttatg
      301 cacgcaagtt atgctttaga aaatgaatta aaagagcttg tgttttcttt ggataagaat
      361 gttaatatcg ctattatagg gcagttttca agtggtaaat caagtttgct aaatttgatc
      421 ttagggcgtg attgtttgcc tacgggtgtt gttcctgtta cttttaaacc tactttttta
      481 cgctatgcaa aagaatattt tttaagagta gaatttgaag atggaagtga tattatcaca
      541 aatatagaaa aattagcctt ttatacggat caaagaaatg aagtaaaaca agcaaaaagt
      601 ttgcatattt ttgcacccat tcctttactt gaaaaaatca ctcttgtaga tactccaggt
      661 ttaaatgcaa atgaaaatga tactttaaca actcttgatg aacttaaaaa tattcatggg
      721 gcgatttggt taagtttaat tgataatgca ggtaaaaaaa gtgaagaaga tgccataaaa
      781 gcaaatttag aacttttagg agaaaatagc atttgtgtat taaatcaaaa agataaatta
      841 agcgcagaag agctagataa tgttttaaat tatgcaaaaa gtgtgttttt aaaatatttt
      901 aatgagctta ttgctatttc ttgcaaagaa gctaaagatg agcaaagcta tgaaaaatct
      961 aattttcaat ctttgcttga ttttttaact cagctagata caacagtttt aaaagaaaaa
     1021 tttgttaaaa gaaaaatttt aaatttatgc gaaattttag aagatgaaaa ccaacttttt
     1081 gtaggtattt ttgatcgttt attaaatcaa tttcaaagtt atgaaaagca tttactttta
     1141 gcgtatgaaa attttttaaa agagattgaa attttaaatc atcagatttt agaacagctt
     1201 aaaagcatta gcgaaagaat ttctagtgaa atttttgcaa gtgttaagga aaaagatgct
     1261 tatttttaca aagaaagcaa aggattttta aagaaagatt tatacacaag atatgattat
     1321 aaagcgcctt atatttcaag cgacgatgct tttttggcga tgttttataa tagtgatgtg
     1381 atgagtaaag agtttaaaaa aatcaaaaat gaactttata aatcttttga agaaatcaag
     1441 atgaaattaa aagattttat aaacatactt gaaagagaaa ttttgctttt taaagcagaa
     1501 ttttcaaaca tacaaaaaga tcacattttc caaagtgata aaaattttag tgaattaaga
     1561 gctttttgca atgcaagtga tgagtacttt ttgaaagatt ttaaggagct tttatttaaa
     1621 agtattttag agcttgattt attttttgaa aaattaaatc ttaaggcttt tacaaattat
     1681 gaaaatgcta cgaaactaag ccttgcattt tttagtcgta aaatcaatga aagtcgtgtt
     1741 ctttatgagc ttgatagttc tgaatttgta cttttttatc ctaaaaaaag tgaaatttat
     1801 gaaagagttt taaatgaatt aaatgtttat gagtttgaaa ctttgcttat taataagcct
     1861 attttgacaa aaattgcaaa aaatttttta gaacaaagtc aaaatttaat ccaagaaaaa
     1921 aataaatttt tagatcttaa aaaagcagag cttcaaaaaa gaagagcaca gattttaaat
     1981 gttagagaaa gtataaagga agattaatga gaatattttt aactttattt ttatttttta
     2041 attcattatt tgcattaagt gaactagaag agggtttaaa actttacgag gcaaataaat
     2101 ttgataaagc ttatgaaatt tttaaaagtc tttgtgaaaa agatatttct aaagcttgtt
     2161 tttctttagc ttttatgcat gaaagtgcta ggggtgtgag taaggattta aatcaagctt
     2221 ataaatttta tgataaagct tgtaaattgg gtttagcaaa tgcgtgttct aatatggctt
     2281 tgcttttgca aaatcaaggt tatgaaaatg aagctctttt ggcttttaat aaagcttgca
     2341 ctttaggaga atcattaagt tgtaataata tagctttatt ttatgaaaaa gaaaaagatg
     2401 gacaaatggc ctcaagtttt tataaaagat cttgtgattt aaaaaatgca agagcttgtt
     2461 atcagttagg atctttatat gataaaggag agcttgttaa agcaagtgta aaatctgctc
     2521 ttgcttttta ttctaaatct tgcactttag gttttggtga ggcttgttat ttgctaggac
     2581 gctataatca actagaaaaa caagatctaa caaaggcaaa aagatatttt ggtatggctt
     2641 gtgatcaaaa acatcaagaa gcttgtgcag cttataaaga acttaattct aaagatatag
     2701 agctttatta aaagttctat tttcattact ttcaaagata tacttaaata aaattaagaa
     2761 taacacaaaa tttatcgctt tttaaagtta aatttatatt aataggacta atatagtctt
     2821 gtttaaatta ttatcaagga gaagtaatgc aagacaatat tattgatcgc agaagctttt
     2881 ttaaactagg gcttctaggt ggttctgtag tagcagctag cactataggt ggcggtgctg
     2941 ttttaaaggc agcagaactt acgcattcgc atcaagcttc acaaggaaaa tcaaataaaa
     3001 ttagaggtag aatgtttttt caaactcaaa ctgaatttga taccttaagt gcagcctgtg
     3061 aaagaattta tcctaaagat gagcaaggag aaggagctat aggtttaggc gtgccttatt
     3121 ttatcgataa tcagctagct agtgcttatg gttataatga tagagaatat atgcaagggc
     3181 ctttcatgga gggcaaagcc gaacaaggct atcaaactcc tatgcaacgc aaagatattt
     3241 ttttagaagg cgtgcatgct cttgaagaaa atgctcaaaa gcgttataaa aaatcttttt
     3301 ctttgcttaa aggtggagat caggataaaa ttttaagcga ttttgaaaaa ggaaaaattc
     3361 aaactacagg ttttaaatct tcttattttt tcacactttt aagagatatg acagtagctg
     3421 gagttttagc tgatccaatt tatggcggaa atgataataa aaatggttgg agaatgatgc
     3481 aatatccagg cgcacaaatg agctatgtgg ataaaattgc aagtgatgaa ttttttaaca
     3541 ttgaacctat gggtttagca gatatggaga gttaaaatgg ctgaagtatt aaaaaaagta
     3601 gatgtagtaa cagttggagc aggatggact ggaggtatag tggctgcaga gcttactaaa
     3661 gcaggtttga atgtacttag tttagaacgc ggacatatgc aaagtactga aaattttaat
     3721 tatatccatg atgagtggag atatgggatt aattatggtt tgatgcaaga ttgctcaaaa
     3781 gacactgtga cttttcgcca tgatcctagt ggtttagcct taccttatcg taaaatgggt
     3841 tcgtttttat tgggtaataa tgttggcggt gcaggggtgc attggaatgg ttggactttt
     3901 aggtttatgc cttatgactt tgaaattcaa accctaagca aacaaagata tggtaataaa
     3961 ttaggtaatg attatacctt gcaagattgg ggcgtgactt ataaggatat ggagccttat
     4021 tatgatagat ttgaaaaaac ctgtggggta tcaggtgaac caaatccttt agcggaaaaa
     4081 atgggagctt ttagatccag tccttatcca caagaacctc ttgaaaatac taaaatgctt
     4141 aaacgatttg aaagtgcagc aaaaagttca aatttacaca cttatcgttt gccagcttca
     4201 aattctaaag gtggctatac aaaccctgat ggtcaagatt tagctccttg tcaatactgt
     4261 gcgtattgtg agcgttttgg ttgtgagtat ggtgcaaaag caagtccttt aaacacagta
     4321 attccaaagg ctatgagcac aggtaaatac accatacgca cttatagtaa tgtaacgcaa
     4381 attcttaaaa aagacggaaa agtaacgggg gtaaaatttg tcgatactag aacgatgaaa
     4441 gagtatatcc agcctgctga tatagttgta cttacaagtt atatgtttaa caatgctaag
     4501 cttttaatgg taagcaacat aggtgagcaa tacgatccaa aaacaggtaa aggaacttta
     4561 ggtagaaatt attgttacca aatgaacatg ggcacaacag ctttctttga tgagcaattt
     4621 aacaccttta tgggttcagg tgctttagga actacgagtg atgattttaa cggagataat
     4681 tttgatcatt ctaaggaaaa attccttcat ggagctatga tttatagcgt tcagcttgga
     4741 actcgcccta tacaatcagc cccacttcca gcaggagctc caacttgggg tgccgaattt
     4801 aaaaaagcat taaactataa tttcacaaga gctattaccg taggagggca aggtgcttct
     4861 ttgcctcata agaataatta tttaagtctt gatccaactt ataaagatgc ttttggtatg
     4921 ccacttttac gcttaactta taatttcact gatcaagata gagctttgca taaatttatc
     4981 acagataaaa cagctgaggt agcaaaaaga atgcaaggag taaaatcaat caaaaaaggt
     5041 gcttatctta aggattatag cgttgtgcct tatcaatcta ctcataacac aggtggaaca
     5101 accatgggcg cagatagaga aactagtgtg gttaatactt atttacaaca ctgggatgcg
     5161 gataatcttt ttgttgtagg agcaggaaat ttccaacata atagtggata taatccaact
     5221 gatactgtgg gagctttggc ttatcgctgt gctgaaggta ttttaaaata tcataaaagt
     5281 ggaaaaagct tagcttgata ataacttgag agtttttgaa aactctcaag attataaatt
     5341 tttaattttc ttccgatata gtatataata tcaaggaagg caaaaatgat taatggtata
     5401 aattcttatt caaactacaa ttatacaaaa aggcaaatgt agtctgctct tggagggtgg
     5461 tatgcaagat gattacttta agttctttta atagatattt tggaaataat cctctgcaga
     5521 cacttactaa aattagagat gaaagtattg aaaatgcaaa aatttaaatt ataaaaagga
     5581 taaaaaatgt taaatatttt acatgcaaat tcaagtcatc gtttccataa atgtatgcct
     5641 aaggaagttc atcaaatata tgatacttta aagcttatgg aacagcaaga aggtacaaaa
     5701 aaaagtagaa gccaaaaaag aagagcaaag taattctaca aatacagata aagcagataa
     5761 taaaaaaata aatttttaga catgtccgtt tagttttaaa acaaagcttt atttataagg
     5821 aagattggca taattttttt atttaaatta agaattttaa gatgcgatgc tgaatttaat
     5881 gtcgttattt tgtgaatttt gttgataagt tctagtgaca agatttttaa agtctttatc
     5941 aaaatttgaa tttttatcgt tgttttttga atctttatct gttttttcta agctattttc
     6001 tgaatttttg tcatcttttt ctttattttc ttcttctttt tctttggctt cttcggcttt
     6061 aagtttcatt gcttcagctc ttgcttcaaa ttccattttt gtagcatttg ctgcaacttt
     6121 atagtcttgt gggctaggat cagcaggagc catagctgct gctgcgattt gtcttgcatt
     6181 ggctatagtt tcttctggtg tgtttccttt ttgcatgctg ataggaactt cgcccgctgt
     6241 agcatacatt tgattatcag ggcctcttgt gtaagtaaaa cttgcagcac ctgctaagcc
     6301 gccacccgct gcttgatgtg cagcttcatg agcctttaca tttctatcga tactttggag
     6361 ttcgcgaact tgagctactt ctttttggct tagctctacg ccattaacca tttgggtttg
     6421 ttcgccattt ttttctttat catctttatt ttcactaaga tttttttcat ctttttgagt
     6481 ggaatcagat tgatttgttt tatcaaaaga aggtttgcta gagtagtaat cataagagtt
     6541 ataacttgaa ctaatttgca tttatccttc tttttgtttt ttaaattttt aggaatttta
     6601 acgcattttg acttaaaaat ttgataaatt ttgtaaaata atcataaata caatttcaaa
     6661 ggaatgtaat gatttatgaa aatgatttga tttatataga gaaagaggag gc
//
LOCUS       DAPIWQ010000096         6667 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.097, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000096 DAPIWQ010000000
VERSION     DAPIWQ010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6667)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6667)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6667
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.097"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            80..1939
                     /locus_tag="RJ267_001305"
     CDS             80..1939
                     /locus_tag="RJ267_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HDV7389153.1"
                     /translation="MALDEKIIAYTENPARELLSVASRTNLSLNELDFSLLAFSTQYR
                     FGDLEWEKISEKELTLFDKDEIFLKNDLQIKQEYKIEIFHGINQSKASQAVKLVANKN
                     LTKIVAQIDFTNLDFHEKLALELLQNIYKKMLKLKFLIGIRIFDFKKKLMSFCNQYKN
                     TPLNKTIQITVAQGIDPIESQDESLILTYKEKTKNYTIDEKRSGIIVVDENEVVLKHV
                     KFKQGKEGKDLNLHTLKVLAANENKVKFSCSSAFKQVEQDGYTEYIALKKGYVVQDGE
                     KFDIANELDFNGVDFKNIGIIRAGLDKNVKINIKFLSEVKDAVNSGVGIECEELNVVG
                     SVGSNTQLNATKMKIEGTTHSKAKIQAKQAYIKTHRGFAEAEILNIDLLEGGTIKAKE
                     VRIKKSLGGNIQADKIYIENLESNNSCVFFENTTIERINGDNNKFHAKIKTLDKNYDE
                     EFAILGEQISKLNHKINKIRQYILSSKNGILSVEKKITELKNQGQNVPVQYEKALKDF
                     SLQNLELNKLQNEEKELLERKKSLQLELINLQKMLFEATFINKSGKWTDMNEIKFSLL
                     EPKEDIFCSSFVNESAKFIGIKKVIQNNQESIEIHKKLDYEEKDIAWLSASKE"
     gene            1915..2466
                     /gene="ruvA"
                     /locus_tag="RJ267_001306"
     CDS             1915..2466
                     /gene="ruvA"
                     /locus_tag="RJ267_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HDV7389154.1"
                     /translation="MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKIQTQEK
                     HEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKAL
                     SLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLENVSDDKSEALAALLTLGFKQEKII
                     SVLVSAQATGTSELIKEALKKLG"
     gene            2476..3516
                     /locus_tag="RJ267_001307"
     CDS             2476..3516
                     /locus_tag="RJ267_001307"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HDV7389155.1"
                     /translation="MKFAILFGGNSYEHEISIVSAVVLKKVINQNLEFIFCDKERRFY
                     HIPSEKMNSKTFSTKAYKKEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDG
                     KIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTILRKNQNSKEKLS
                     FPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI
                     NDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLF
                     KGALIRCDFFILDNEIYLNEINPNPGSLANYLFKDFNTTLNALADQISLEKMIKINYN
                     FLHSINGQKGKL"
     gene            3576..3791
                     /locus_tag="RJ267_001308"
     CDS             3576..3791
                     /locus_tag="RJ267_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HDV7389156.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPIMEKLKKSESGKIVILKNNKFEA
                     VMLSMKEFERLQNAMQLLENIYKNQKA"
     gene            3793..4512
                     /locus_tag="RJ267_001309"
     CDS             3793..4512
                     /locus_tag="RJ267_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDV7389157.1"
                     /translation="MAQTQLSYKNKTYQISYEILGDLSLPQILILHGWGADKKLMKQS
                     FCPFLKDFCQIYMDLAGFGNSSVEEILNTQDYANITELFLKQKKLNVCFFMGHSFGGK
                     VSTLLAKEKDTLILLSSAGILAKKSLKVRFKIRIFKILKLFGLGKFYRYFASKDGANL
                     SPIMYETFKKVVDEDFSEIFAKQKAKSLIFWGKSDEATPLYCGEKMHQFLKNSTFYPL
                     EGDHFFFLKHSAFIAQKIKEI"
     gene            4513..5940
                     /locus_tag="RJ267_001310"
     CDS             4513..5940
                     /locus_tag="RJ267_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HDV7389158.1"
                     /translation="MLINTLYFINSLFFNFCIAFYLMSALQWYSYKFKRVFFHYHKPL
                     WHLYFLFIPYFLFLAFPLYSLVYFALIHTPILYFWNKGIDKKLVFTSKVKWFFVFVFV
                     YNAIFTILALRFSFLFNLFSLPFALLSLKIYEFFTNLYYKKQAKAKLRANENLKIILI
                     TASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINANLSQDTQIYIAEAGAR
                     LKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLEALNSERLEKAFLHSST
                     QKEEDKLISLYDDKLSLIHSSLEGLEFKVDIENKSYDFKSQILGDFNAQNLCVCILCA
                     HYLGIKLEKIQKQVLNINSVEHRLQVLSREPKFIIDDGFNGNFKGMSTSYKLCKSYKG
                     RKVLVSPGIVEVSEEENIKLAKIINECFDLAIISAQINAEIFKKELKIKTIILKEKSQ
                     LVQTLAKETKHGDLILFSNDAPSFM"
     gene            complement(5998..>6667)
                     /locus_tag="RJ267_001311"
     CDS             complement(5998..>6667)
                     /locus_tag="RJ267_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389159.1"
                     /translation="GISELSSDKTIGIMPKNYDKLTITNYYNTQEQYNEAEQLGMFGH
                     INIGLQPLNFTPQSMQTQNLDKDTAIDTFNPDMSVYPQNEDGSYSKEALFMSFLKSTG
                     VSPREGSATLNPIAKSYAEAMAKESFDGSLASLDDIMTGKVDFASLLKGYAQEGWLDA
                     DIYAMDKGVAWQNTSIGYGGAWFDREFNQVKANGWKASSESINSYVGSIMDRLNNLMG
                     QTRV"
BASE COUNT         2536 a          955 c         1008 g         2168 t
ORIGIN      
        1 tataaagaga actattttaa ctaaaattga ttaaaaattg actataatta cattcttaat
       61 tttttacaag gggaaagttt tggctttgga tgaaaaaatt attgcctata cagaaaatcc
      121 agctcgagag cttttaagcg tagcttcacg aacaaacctt agcttaaatg agcttgattt
      181 tagtttattg gcattttcta cacaatatcg ttttggagat ttagaatggg aaaaaatctc
      241 tgaaaaagaa ttaactcttt ttgataaaga tgaaattttt ttaaaaaatg atcttcaaat
      301 caagcaagaa tacaaaatag aaattttcca cggtataaac caaagcaaag catctcaagc
      361 agtcaaacta gttgcaaata aaaatttaac caaaatagtt gctcaaattg attttacaaa
      421 tttagacttt catgaaaaac tagcactaga acttttgcaa aatatttata aaaagatgtt
      481 gaaacttaaa tttttaatag gtatccgcat ttttgatttt aagaaaaaat taatgtcttt
      541 ttgcaaccaa tataaaaaca cccctttaaa taaaactata caaatcaccg ttgcacaagg
      601 tattgatcct atagaaagtc aagatgaatc tctgatcttg acttataaag aaaaaaccaa
      661 aaactacact atcgatgaaa aacgctcagg tattattgtt gttgatgaaa atgaagttgt
      721 tttaaaacac gtcaaattta aacaaggtaa agaaggaaaa gacttaaatt tacacacctt
      781 aaaagtttta gctgcaaatg aaaataaagt taaattttct tgttcttcgg cttttaaaca
      841 agtagagcaa gatggataca cagaatatat agccttaaaa aaaggttatg tagtacaaga
      901 tggtgaaaaa tttgatatcg ccaatgaact agattttaat ggggtagatt ttaaaaatat
      961 agggattata agagctggac tagacaaaaa tgtcaaaatc aatataaaat ttctttcaga
     1021 agtaaaagat gctgtaaatt ctggcgttgg gatagaatgt gaagaattaa atgtagtcgg
     1081 aagcgtagga agcaacactc aacttaatgc caccaaaatg aaaattgaag gcactacgca
     1141 ctctaaagcc aaaattcaag ccaaacaagc ctatataaaa actcatagag gatttgcgga
     1201 agccgaaatt ttaaatatag atttgctcga aggtggaaca atcaaagcca aagaagtgag
     1261 aattaaaaaa agtttaggcg gaaatataca agctgataaa atctatatag aaaatttaga
     1321 aagtaataat tcttgtgtgt tttttgaaaa caccacaata gaacgcatta acggggataa
     1381 caataaattt catgctaaaa ttaaaactct tgataaaaat tatgatgaag aatttgcgat
     1441 tttaggagag caaatttcta agttaaatca taaaataaat aaaataagac aatacatttt
     1501 atcaagcaaa aatggaattt taagcgttga aaaaaagata acagaactta aaaatcaagg
     1561 tcaaaatgtt cctgtacaat acgaaaaagc cctaaaagat ttctctttac aaaatcttga
     1621 attaaataaa ctacaaaatg aagaaaaaga acttcttgaa cgcaaaaaat ctttgcaatt
     1681 agaattaatc aatttgcaaa aaatgctttt tgaagcaact tttataaata aaagcggcaa
     1741 atggactgat atgaatgaaa tcaaattttc acttctagag cctaaagaag atattttttg
     1801 ctcttcattt gttaatgaaa gtgctaaatt tataggcatt aaaaaagtca tacaaaacaa
     1861 ccaagaaagt atagaaatac ataaaaaatt agattatgaa gaaaaggata tagcatggtt
     1921 gtcggcatcg aaggaataat cacaaaaaaa gaacctactt ttatcattgt taaatgtgct
     1981 agtggtttaa gctatgggat atttatttct cttttttgtt ctgctaaaat tcaaactcaa
     2041 gaaaagcatg agttttttat cactcaaatc atcaaagaag attctaataa attttatggc
     2101 ttcttggata aagatgaaca aaaaatgttt gaaatgcttt taaaagtcaa tggagtgggt
     2161 gcaaatactg ctatggcggt atgctctagt cttgatgtaa attcttttta caaagcgtta
     2221 agtttgggcg atgaaagcgt gcttaaaaaa gtacctggca taggtccaaa aagtgcaaaa
     2281 cgcattatag tagaactttc tgacacaaaa accaaacttg aaaatgtaag cgatgataaa
     2341 agcgaagcct tagccgcact tcttactcta ggctttaaac aagaaaaaat cataagtgtt
     2401 ttagtaagtg ctcaagcaac aggcacaagc gaactcatca aagaagctct taaaaaacta
     2461 ggataaagga ataaaatgaa atttgcaata ctttttggcg gaaattctta tgaacatgag
     2521 attagtatag taagtgctgt agtgcttaaa aaagttatca atcaaaattt agaatttatt
     2581 ttttgtgata aagaaagaag attttatcat atcccaagtg aaaaaatgaa ttctaaaact
     2641 tttagcacca aagcttataa aaaagaaaaa gaactcttca tcaaacaagg aggttttttt
     2701 agcaaaggct ttttaaaaga aaataaacta gagtgcgaat gcgtgatcaa tcttatccat
     2761 ggtagagatg gagaagatgg aaaaattgcg gctttatttg agttttattc tattaaattt
     2821 ataggaccta ggcttgaagc tagtgtatta tcttttaaca aagaacttac caaactttat
     2881 gccaaaagcg ttggagtaaa aacacttgat tataccatac taagaaaaaa tcaaaactct
     2941 aaagaaaagc ttagttttcc ttgcattatc aaacctgcaa gacttggaag tagtataggt
     3001 attagtatag taaaagatga aaaagattta gaatacgcca aagatgtagg ttttgaattt
     3061 gacaatgatc ttgtagtaga agaatttaaa aacaatatca aagaatacaa tcttgcagga
     3121 tgtatgatca atgatgagtt tgttttttcc attatagaag agccaaagaa aaaagaattt
     3181 ttagactttg aacaaaaata tcttagcttt tcaggacaca atgaacttat agaagcagat
     3241 ttaagcgaag aattaaaaga aaaactcaaa gatagcttta aaaagatcta caatcctttg
     3301 tttaaaggtg ctttaatacg ctgtgatttt tttatactgg ataatgaaat atatttaaat
     3361 gaaatcaacc caaaccctgg ttctttggct aattatcttt ttaaagattt taataccact
     3421 ttaaacgctt tagctgatca aatttcactt gaaaaaatga taaaaatcaa ttacaacttc
     3481 cttcactcca ttaacggaca aaaaggaaaa ttataagctt ttaagtcaaa atgcgctaaa
     3541 ttatacataa aatttagcgt attttaggaa gaaaaatgct ctcttttaaa caagatgaaa
     3601 tttacactgc caccgaagtg gtaagaaatt ttagccccat tatggaaaaa ctcaaaaaaa
     3661 gcgaaagtgg aaaaatagtt attttaaaaa ataacaaatt tgaagctgta atgcttagta
     3721 tgaaagaatt tgaacgctta caaaatgcca tgcaactttt agaaaatatc tacaaaaatc
     3781 aaaaggctta aaatggctca aactcaactt tcttataaaa acaaaactta tcaaatttct
     3841 tatgaaattt taggtgatct ttccttaccg caaatactta tcttacacgg ctggggagct
     3901 gataaaaaac ttatgaaaca aagtttttgt ccttttttga aagatttttg tcaaatttat
     3961 atggatttag caggttttgg aaattcaagc gtggaagaaa ttttaaacac tcaagattat
     4021 gccaatatca cagaactttt tttaaaacaa aaaaaactca atgtctgttt tttcatgggg
     4081 cattcttttg gtggaaaagt aagtacccta ctcgcaaaag aaaaagacac cctaatctta
     4141 ctttcaagtg caggaatttt ggctaaaaaa tccctaaaag tgcgttttaa aatccgtatt
     4201 tttaaaattt taaaactctt tggtttggga aaattttatc gctattttgc tagtaaagat
     4261 ggagcaaatc ttagtcctat aatgtatgaa acctttaaaa aggttgttga tgaggatttt
     4321 agtgaaattt ttgccaagca aaaggctaaa agcttgattt tttggggaaa aagcgatgaa
     4381 gctacgcctt tgtattgtgg tgaaaaaatg catcaatttt taaaaaatag tactttttat
     4441 cctttagagg gggatcattt tttcttttta aaacactctg ctttcatagc tcaaaaaatc
     4501 aaggaaattt aaatgcttat caatactctt tattttatca attctttatt ttttaatttt
     4561 tgtatagctt tttatcttat gagtgcttta caatggtatt cttataaatt taaacgcgtg
     4621 ttttttcatt atcataaacc tttgtggcat ttgtattttt tatttattcc ttatttttta
     4681 ttcttagctt ttcctttata ctctttggta tattttgcat tgatccatac tccgattttg
     4741 tatttttgga ataaaggcat agataaaaag cttgttttta caagtaaggt taaatggttt
     4801 tttgtttttg tttttgttta taatgctatt tttaccatcc ttgctttgcg tttttctttt
     4861 ctttttaatc tttttagtct tccttttgct ttattgagtc ttaaaattta tgagtttttt
     4921 acaaatttat attataaaaa acaagccaaa gccaaactaa gagccaatga aaatttaaaa
     4981 atcatactca ttaccgcaag ttttggaaaa acaagtatta aaaatttttt atacgaactt
     5041 ttaaaagatg actttaaaag ctacaaaaca ccacgctctg tcaatacctt actaggtata
     5101 gttgctgata tcaatgctaa tttaagtcaa gatactcaaa tttacatagc tgaagcaggc
     5161 gctagactta aaggcgatat cgatgaaatc acgcattttt tacaacctca aatcagcata
     5221 gtaggagaga taggcaatgc acatttagag tattttaaaa gtgttgaaaa tatccgctca
     5281 accaaacttg aagccttaaa ttccgaaaga ctagaaaagg cttttttaca ctctagcacc
     5341 caaaaagaag aagataaact catcagcctt tatgatgata aattaagtct tattcattca
     5401 agtcttgaag gtttagaatt taaagtcgat atagaaaata aatcctatga ttttaaaagt
     5461 caaattttag gggattttaa tgcgcaaaat ctttgtgttt gtatactttg tgctcattat
     5521 cttggcataa aactagaaaa aattcaaaag caagttttaa atataaattc cgtagaacat
     5581 cgcttgcaag tgctttcaag agagcctaaa tttatcatag atgatggttt taatggaaat
     5641 tttaaaggta tgagcacaag ctataaactt tgtaaaagct ataaaggacg caaagtttta
     5701 gtaagtcctg gtatagtaga agtaagcgaa gaagaaaata taaaacttgc caaaatcatc
     5761 aatgagtgtt ttgatcttgc tatcattagt gcacaaatca atgctgaaat tttcaaaaaa
     5821 gagttaaaaa taaaaaccat tatacttaaa gaaaagagtc aactagttca aactctagct
     5881 aaagaaacaa aacacggaga tttgatactc ttttcaaacg atgcacctag ctttatgtga
     5941 ttcgcataag tatttgcaaa tgtcatcatt tttaatttga cttcgtgcaa atacttccta
     6001 aaccctagtt tgccccataa gattatttaa tctatccatt atagatccaa cataagaatt
     6061 gatactttca ctgcttgctt tccaaccatt agcttttact tgattaaatt ctctatcaaa
     6121 ccaagctcca ccataaccta tgcttgtatt ttgccaagca acccctttat ccattgcata
     6181 tatatctgca tcaagccaac cctcttgtgc atagcctttt aacaaacttg caaaatcaac
     6241 tttacctgtc ataatgtcat ctaaagaagc taaagagcca tcaaagcttt ctttagccat
     6301 agcttcagca taagacttag ctataggatt taatgttgca ctaccttctc ttggcgatac
     6361 acccgttgat tttaaaaaac tcataaacaa agcttcttta gaataacttc catcttcatt
     6421 ttgtggataa actgacatat caggattaaa agtatctatt gcagtgtctt tatctaaatt
     6481 ttgagtttgc atactttgcg gagtgaaatt taatggttgt aagcctatat taatatgtcc
     6541 aaacattcct aattgttctg cttcattata ttgctcttgt gtattataat agtttgttat
     6601 tgttagcttg tcataatttt tcggcataat acctatagtt ttatcagatg ataattcact
     6661 aattccc
//
LOCUS       DAPIWQ010000097         6152 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.098, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000097 DAPIWQ010000000
VERSION     DAPIWQ010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6152)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6152)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6152
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.098"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            3..428
                     /gene="exbB"
                     /locus_tag="RJ267_001312"
     CDS             3..428
                     /gene="exbB"
                     /locus_tag="RJ267_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HDV7389160.1"
                     /translation="MEFLKDYIDLIIFLILGIMAFIAFWCVVERMLFFRKINFKNYEN
                     QEQFDDAISENLTTIYIIYSNAPYIGLLGTVIGIMVTFYEMGLAGNIDVKSIVVGLSL
                     ALKATALGLLVAIPALMAYNALLRKVSLLSNAYKANKNA"
     gene            421..810
                     /gene="exbD"
                     /locus_tag="RJ267_001313"
     CDS             421..810
                     /gene="exbD"
                     /locus_tag="RJ267_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HDV7389161.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPS
                     SENATNISNNEKKLLITIDEKNTFYLNDKLADLNEVQNAIFSLDKKTIVELKSDKNAK
                     FESFVKIIDFLKAKEHENFQILTEKNK"
     gene            807..1490
                     /locus_tag="RJ267_001314"
     CDS             807..1490
                     /locus_tag="RJ267_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDV7389162.1"
                     /translation="MKTLFLNHKYQASYITFIVFIPLLFVIFHSNDFFKMEIKNEDSF
                     SLAIKQFTQTNPTNETKPTESIIEPIKPKPQPKVIKKTPEKMQKKIKKTPPHPIPNKT
                     PIAPTQEVKTFAKTTDTNVKPKITQLTQGKDNHPVLKEIQKAIQQAQFYPRQAKKMRM
                     QGTVKVEFLWKENKTLADLKIIEISGYDLLDKSALESIRKASLNFPHYNGDLRITLPI
                     IYDFKTLRG"
     gene            complement(1503..2372)
                     /locus_tag="RJ267_001315"
     CDS             complement(1503..2372)
                     /locus_tag="RJ267_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389163.1"
                     /translation="MKIDTSASLTHSLTNNVDKKELSVLKKEDQDKIPVQDLSSLNSD
                     GVKVVFENKQGELIALNLSDENYSSLQKNFGSYMNYVARNDGSIRLNGEVNQFVSNWF
                     ESVKDNFGSLNSNLNNKQQSVKLNFNTSTLQQSMQNLGFKTSDEKISDDANIEEKLNF
                     FIDKDVNKDGKVDDSDVKEPSMREILSDIKEASGGGANAMKTIDPQKINKKDDKENNI
                     KEKEDEDLLQKAQEKGLSALSADEQAKLEASNPEEFEKLKQKSLQELSQNLSKDFQNK
                     IENQEAQIVDKRV"
     gene            complement(2376..2537)
                     /locus_tag="RJ267_001316"
     CDS             complement(2376..2537)
                     /locus_tag="RJ267_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389164.1"
                     /translation="MLKIILVLSILSSFAFANSCANYEQELKKCNSLKNSHERKMCRL
                     GLFAKCKKG"
     gene            2632..3615
                     /locus_tag="RJ267_001317"
     CDS             2632..3615
                     /locus_tag="RJ267_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MnmA/TRMU family protein"
                     /protein_id="HDV7389165.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMVGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGIIGRSRKRQLELAAKFGLEDFESPGGGCLLTLDSFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEAIEIGDLIGAYSLVDEK
                     ISEKDLELALKIALTYTKHEVGKSYELKFKNQAYTSIAFENKADINQFFIS"
     gene            complement(3701..4789)
                     /gene="aroC"
                     /locus_tag="RJ267_001318"
     CDS             complement(3701..4789)
                     /gene="aroC"
                     /locus_tag="RJ267_001318"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HDV7389166.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELD
                     KRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPA
                     HADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLREFDICVQSGVFGVGTFV
                     SNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGL
                     GEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSCNNDALKDGKFLSNHSGGI
                     LGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLKFELKGRHDPCVGVRGSVVASA
                     MVRLVLADCLLLNASANLNNLKNAYGLK"
     gene            complement(4789..5463)
                     /locus_tag="RJ267_001319"
     CDS             complement(4789..5463)
                     /locus_tag="RJ267_001319"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HDV7389167.1"
                     /translation="MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN
                     GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ
                     EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL
                     EKLGAL"
     gene            complement(5450..5890)
                     /gene="rnhA"
                     /locus_tag="RJ267_001320"
     CDS             complement(5450..5890)
                     /gene="rnhA"
                     /locus_tag="RJ267_001320"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HDV7389168.1"
                     /translation="MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNN
                     RMELMAIIESLKALKEPCEISLFTDSNLMVQSINEWLEGWIKKDFKGKKNIDLWKEYI
                     KVAKSHKIKAFWVKAHNGHLENERCDTLAREAALKIARENDEKH"
     gene            complement(5877..>6152)
                     /locus_tag="RJ267_001321"
     CDS             complement(5877..>6152)
                     /locus_tag="RJ267_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389169.1"
                     /translation="AFNLENQDFLEFFYALGKISKHDDTHQFVFKNSNFKMLKILKDN
                     SFNAGLEFSYRCSECKNVMPLFFYHCPVCYEFNTCKIIYEVKNNETH"
BASE COUNT         2161 a         1098 c          780 g         2113 t
ORIGIN      
        1 atatggaatt tttaaaagat tacatcgatt taattatctt tttaattcta ggaattatgg
       61 catttatagc tttttggtgt gttgtagaaa gaatgctatt ttttagaaaa attaacttta
      121 aaaattatga gaatcaagag caatttgatg atgcgattag tgaaaattta accactatat
      181 atatcatcta ttccaatgcc ccttatatag gacttttagg cactgtaata ggcatcatgg
      241 ttacatttta cgaaatgggc ttggcgggca atatagatgt caaatctata gtcgtggggc
      301 tttctttagc tcttaaagct acagccttag gacttttggt tgctattcct gctttaatgg
      361 cttataatgc cttacttaga aaagtttccc tcttaagcaa tgcttataag gcaaataaaa
      421 atgcttaaac taccaaaaaa tgaaggttta aatatagtcc catttataga cattatgctt
      481 gttttgcttg ctatagtact tagtatttca acctttattg cgcatggaaa aattcaaatc
      541 tcacttcctt caagtgaaaa tgctaccaat ataagcaata atgaaaaaaa acttcttata
      601 accatagacg aaaaaaatac tttttattta aatgataaat tagctgattt aaatgaagtt
      661 caaaatgcta ttttttcact tgataaaaaa accatagtag aactaaaaag cgataaaaat
      721 gctaaatttg aaagctttgt aaaaattata gattttttaa aagccaaaga acatgaaaat
      781 tttcagattc ttactgagaa aaacaaatga aaactttatt tttaaatcat aaataccaag
      841 cttcttatat aacttttata gtctttatac ctttactttt tgtcattttt cactcaaatg
      901 acttttttaa aatggaaatt aaaaatgaag attctttttc tttagcaata aaacaattta
      961 cccaaactaa tccaacaaat gagactaaac caacagaatc cattatagaa cctatcaaac
     1021 caaaacctca gccaaaagtt attaaaaaaa ctcctgaaaa aatgcaaaaa aagataaaaa
     1081 aaacacctcc acacccaata ccaaataaaa ccccaatagc accaactcaa gaagttaaaa
     1141 cttttgcaaa aacaactgat acaaatgtca aacctaagat cactcaatta acacaaggaa
     1201 aagataatca ccctgtatta aaagaaatcc aaaaagctat acaacaagca caattttatc
     1261 caaggcaagc aaaaaaaatg cgtatgcaag gaactgtaaa agtagaattt ttatggaaag
     1321 aaaacaaaac tttagcagat ttaaaaatca tagaaatctc gggatatgat ttgttagata
     1381 aaagtgcttt agaaagcata agaaaagctt ctttaaattt tccacactat aatggagatt
     1441 taagaattac actacctatt atatatgatt ttaaaaccct aagaggataa aattataatt
     1501 tgctacactc tcttatctac aatttgtgct tcttgatttt caattttatt ttgaaaatct
     1561 ttacttaaat tctgacttaa ttcttgcaaa gatttttgct tcagtttttc aaattcttca
     1621 ggattgctag cctcaagctt tgcctgctca tcagcactta aagcacttaa acctttttct
     1681 tgagcttttt gaagcaaatc ttcgtcttct ttttctttga tattattttc cttatcatct
     1741 tttttattga ttttttgcgg atctatggtt ttcatagcat tagctccacc acctgatgct
     1801 tctttaatgt cgcttaaaat ttctctcatg ctaggttctt taacatcact atcatcaact
     1861 ttaccatctt tatttacatc tttatcaata aaaaaattta atttttcttc tatatttgca
     1921 tcatcagata ttttttcatc acttgtttta aagcctaaat tttgcatact ttgttgaagg
     1981 gtacttgtat taaaatttaa ttttacactt tgttgtttat tatttaaatt tgaatttaaa
     2041 gaaccaaaat tatcttttac actttcaaac caatttgaaa caaattgatt tacttcgcca
     2101 ttaagcctta tactaccatc atttctagca acataattca tataagaacc gaaatttttt
     2161 tgtaaactac tataattttc atcgcttaaa tttaaagcta taagttcacc ttgcttattt
     2221 tcaaaaacaa ccttaacacc atcgctattt aaactcgaaa gatcttgcac gggaatttta
     2281 tcttgatctt ctttttttaa tacgctaagc tcttttttat caacattatt agttaaagaa
     2341 tgggttaaac tagcagaagt atcgattttc attatttatc cttttttaca ttttgcaaat
     2401 aaacctaaac gacacatttt tctctcatgt gaatttttta aagaattaca ctttttaagt
     2461 tcttgctcgt agttagcaca agaatttgca aaagcaaaag aactcaaaat gcttaaaacc
     2521 aaaattattt ttaacatttt ccaatcctta ttttaaagat tttttagtta aaattatacc
     2581 ttttataatc gacaaaatct taaaaaactt tataatctca gaaaggaatc aatgaaagca
     2641 ttagctcttt ttagcggtgg gcttgatagt atgcttgcaa tgaaactcat cactgcacaa
     2701 ggcatagaag ttaaagctct aaatatcaac ataggttttg gaagcacaag tgataaaagc
     2761 gaaatcatga aaaagcgtgc ggcaatggta ggtgcagatt ttgaaatgat agatgtaaga
     2821 aattcctatc ttcaagaagt gctttttaat ccacaatatg gctatggcaa acattttaat
     2881 ccttgtatag attgtcatgc ttttatgttt aaaactgctc ttgctatgtt aaaagaagaa
     2941 aatgcaagtt ttatcatcac aggagaagtt ttaggacaac gccctatgag tcaaagaagt
     3001 gatgcaatgg caaaggttaa aaaacttgct cttgatgaag aagatttaat cttgcgtcct
     3061 atgtgtgcaa aaaacctacc tctaaccaaa cctgaaagag aaggttgggt agatagagaa
     3121 aaactcgaag gtattattgg aagaagtcgt aaaagacaac ttgaacttgc agctaaattt
     3181 ggcttagaag actttgaaag cccaggtgga ggttgtttgc taactcttga tagttttgct
     3241 aaaaaaattc gagatttcat agaatttgac aaagatatgc aggttaatga cgcacaactt
     3301 ttaaaatatg gtcgtcattt aagattaccc aatggagcta aaatgatcat aggtagaaat
     3361 gaacttgaaa atactctttt aaaaggttta aaaactccta aatatgaagc aatagaaatt
     3421 ggggatttaa tcggagctta ctctttggta gatgaaaaaa tttcagaaaa agacttagaa
     3481 cttgccttaa aaatagccct tacctatact aaacacgaag taggaaaaag ctatgaactt
     3541 aaatttaaaa atcaagctta tacaagtata gcttttgaaa ataaggctga tattaatcaa
     3601 ttttttatta gttaaagtat aaagtattta gcaaaacaag cgatatagta tttgaatctt
     3661 ttcaaaatat tgcaatcaag cccatgaaaa tgggcttttt ttattttaat ccataagcat
     3721 tttttaaatt gtttaaattc gcactcgcat tcaaaagcaa acaatcagcc aaaactaaac
     3781 gtaccatagc actagctaca acacttcctc taacacctac acaaggatca tgcctacctt
     3841 tgagttcaaa tttcaaatta ttgccaaatt tatctatact ttcttgcttg gcaaaaatag
     3901 aaggagtagg tttaaaataa gtttttaaaa taagattttc tccatttgaa attcctccta
     3961 aaattcctcc gctatgattg cttaaaaact tgccatcttt taaagcatca ttattacacg
     4021 atccgcgcat tttgcttgca ttaatacctt cgcctatttc aactgcttta acagcattaa
     4081 ttcccattaa agcatgagct aatttagagt ctaacttatc ataaagaact tctccaagtc
     4141 ctataagcat accactaact tttgtaaaaa cagcagcgcc tacgctatct tttgaatttc
     4201 tagcatttaa aatttcattt ttaaagtcac tttctagttt tggatcaagg caaaaaattt
     4261 cacttttctt agcaaattca aaatcaaatt cttcttcttt caaatttgat acaaaagttc
     4321 ctactccaaa aacaccactt tgaacacaaa tatcaaattc acgcaaaagc atcgctgcaa
     4381 ctgcaccacc agccactcta gcaacacttt ccctagcgct tgatctaccc ccacccctat
     4441 gatctcttat gccatattta taaaaataag taaaatccgc atgagcagga cgaaatagat
     4501 cttttaaatt atcataatct ttagaatgag cattttcatt aaaaactact atagctatgg
     4561 gatgacccgt tgtatatcct tcaaaaaccc cgcttaaaac ctgagcttta tcgctttctt
     4621 ttcttggtgt tgcaaattta cttccgcctt tgcgtttatc aagctcattt tgcaaaaatt
     4681 cttcatcaaa tttaacccca gcaggcattc catcaataat acatccaaca gccacaccat
     4741 gagactcacc aaaacttgta aatttcaatc tcgtaccaaa ggtattcact ataaagctcc
     4801 taatttctca agtgcaattt ttgctgccat ttgctgtgct tcttttttgc ttcctgcaat
     4861 agctcttgca agttctttac catcaagcat taaagcaatt tcaaattgct ttaaatgatc
     4921 agggccaaaa gcacgcactg tttcatactg cggagtttgt ccgatttttc cctgtgtaat
     4981 ctcttgtaat tttgttttat aatcttttat aagaattttt gcatcaattt gagggaaatt
     5041 tttttctata agccttaaag caatagtttt tgcaaactcg aacccagctt ctaaatgtat
     5101 agcacctata atggcttcta acgcatctga aagtatagaa ggcttttctt ttcctccatt
     5161 gttttcctca gcaacactca taagaataaa atcgcccaaa tttaaactat ttgcaatttt
     5221 tgcaaaagac ttttcattta ctaaagctgc tctaagctta gataaatctc cttcggcatc
     5281 tttggcgaat ttatgaaaaa ggtattcacc tacaactaaa tcaagcacgg catcacctaa
     5341 aaattccaag cgttcgttgt tgtaagattt tttaaaactt ttatgggtta aagcatgtat
     5401 aagaagattt ttatctttaa attcataagt taaactctgc tctagctttt caatgttttt
     5461 catcattttc ccttgcaatt ttcaaagcag cttcacgcgc caatgtatca cacctttcat
     5521 tttccaaatg tccattatgt gcttttaccc aaaaagcctt aatcttatga gattttgcca
     5581 ctttaatata ttccttccat aaatctatat tttttttacc tttaaaatcc ttttttatcc
     5641 atccttctag ccattcatta atactttgaa ccattaggtt agaatctgta aaaagcgaaa
     5701 tttcacaagg ctcttttaaa gccttcaaag attcaataat tgccattagc tccattctat
     5761 tgttagtggt attagcctca gctccaaaac cttccttttg atactcctta taacgcaaaa
     5821 tataagccca tccgccaaaa cctggattat taagacatga gccatctgta taaatttcaa
     5881 tgtgtttcat tgtttttcac ttcataaata attttacaag tattaaactc ataacaaaca
     5941 ggacagtgat aaaaaaacaa aggcattaca tttttacact cagaacaacg atatgaaaat
     6001 tctaaccccg cattaaaaga attatctttt aaaattttta acattttaaa gttagaattt
     6061 ttaaaaacaa actggtgcgt atcatcatgc tttgaaattt tacccaaagc ataaaagaat
     6121 tctaaaaaat cttgattttc taaattaaac gc
//
LOCUS       DAPIWQ010000098         6115 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.099, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000098 DAPIWQ010000000
VERSION     DAPIWQ010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6115)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6115)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6115
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.099"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            58..966
                     /locus_tag="RJ267_001322"
     CDS             58..966
                     /locus_tag="RJ267_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HDV7389170.1"
                     /translation="MGILKGTLPALLTPYKDDGSINEKEFIRYCEFGISKGLNGLFCN
                     GSAGDSQALSVEEQVKLMKLTKKATKNNIPIITGITSTIYENTFILAQKAYELGLDAL
                     LLAMPYYYKLSEDALFEYVKYLASEVKLPLYVYNIPLFAPALSLKFIEKVSKLDNVVG
                     IKDSSGDALLLNHILDVVPSNFDVFVGREEFYVGALLAGVKGSMTSIGGVFPELMSEI
                     YKSINEKNIGRALLIQKSLLKAIRFGMSIAFPMGFALLLKARGFEFVNASIHPLSPAT
                     KEELNTRFDEAKELIKTIEKETGIKL"
     gene            963..1226
                     /locus_tag="RJ267_001323"
     CDS             963..1226
                     /locus_tag="RJ267_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HDV7389171.1"
                     /translation="MKGYIIVNEKDNIATALRDFKKGEKVANIELLNDIASGHKFALK
                     DIKKDEIIIKYAEAIASASCDISTGEWVHIHNTAGIRGRGDKE"
     gene            1229..2395
                     /locus_tag="RJ267_001324"
     CDS             1229..2395
                     /locus_tag="RJ267_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HDV7389172.1"
                     /translation="MKKIMGYRREDGKFGLRNKVIIIPSVHCANKVCENIARKCNGAV
                     YINHQHGCSQLEFDALQTRDVLIGHGSNANVFGVLIIGLGCEVIQAKAVAEKIKEATP
                     YKKVEYLVIQECGGSKNTIENGIKIVNEMLESAAKLQKSEGDFSDLILGTECGGSDSY
                     SGLSANPALGSLSDFVIDEGGAVILAETTELIGCEAILAKRAKNDEIAKKVYDKILAY
                     ENLVKSFHADIRGANPSPGNMAGGLSTIEEKSLGCVYKAGTRTLMDVIDYAKPVVSKG
                     LTFMNTPGNDIEQLSAMVAGGANICVFTTGRGTPTGSAIVPTIKMSSNTFCYENMNDA
                     IDINAGSIIDGVKTKEEVRDELIELIVRISDGELVKAELNEQNDFSVWRLATTC"
     gene            2407..3693
                     /locus_tag="RJ267_001325"
     CDS             2407..3693
                     /locus_tag="RJ267_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004314306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7389173.1"
                     /translation="MKHANSIKLELVCKKISWRILPLIVLMFCLSMLDRTNISFVKSH
                     IEIDAGIGEAAYALGAGIFFIGYAIFEVPSNLFLHKLGAKIWLSRIMITWGLVTMAMI
                     FIQGEISFYVLRFLLGLTEAGFSPGIILYLSYFFPAIYRSKVYGIYQMGVPIAFVFGS
                     LISGFILDYTPNIYFKNWQWMFLIEGGITVLVGIFCLFYLDSHPKDAKWLDIKEKDIL
                     LKHIEISNTKAKDYSIKDIFKSILVWKFVFVYFCIQLSVYGVLFYLPSKIAQILQINV
                     GFEVGLLNAIPWIFVFIALPIFTSLADKKHSWNLHAILFLLLASLSMIASTFVTNLAA
                     FLFFISLAAIGFIVIQPIFWNLPTQVLKGKGAAAAIALIGSLGNLGGFVAPTLKTYIE
                     NHFGVEFGLIVLALIAILGVLVLIHLKITLNLDKGE"
     gene            3694..4482
                     /locus_tag="RJ267_001326"
     CDS             3694..4482
                     /locus_tag="RJ267_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDV7389174.1"
                     /translation="MDLKIKNKVCIITGGAKGIGYGIAKLWASEGGIPVIFSRSMPKE
                     HDKELKKLSSEYEFYEIDLKNYEQIEKLVKKVAIKHGGIYALVNNAGTNDNLHIENTS
                     TQDLIKSYENNLFHYYTMTKECLPYIKKEQGSILNIVSKTGITGQGRTSAYASAKAAQ
                     MGFTREWACAFAKDNVRVNAIAPAEVMTPLYEKWLQNFPNPKEQYEKIAKAIPLGHRF
                     TTIEEIANTAVFTLSPLASHTTGQILMPDGGYVHLDRALNWDEN"
     gene            4493..5749
                     /gene="fucP"
                     /locus_tag="RJ267_001327"
     CDS             4493..5749
                     /gene="fucP"
                     /locus_tag="RJ267_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HDV7389175.1"
                     /translation="MTDSKNIKIAIVLVTSLFFLWGVSYGLIDVMNKNFQNHLHISQH
                     ESGFLQFAYFGAYFIIALPAGYIANRFSYKMGIIFGLALYAIGALLIIPATNLASFHL
                     FLFAFFILACGIGSLETSANPYMTKLGDEKNASFRINAAQSFNGLGQFVGPIIGGVLF
                     LSITKQEEGASKEQIEAALVANMGNVQLVYIGIAVIVILILIAFVANKLPEGSAVSDD
                     YKQKDDSKPIYVFKHRHFNLGLLAQFLYIANQVAAGAFFINYVVEHNEGLKDAQGAYY
                     FSIALVAFMLGRIVSTPLMKIIKGEKILGFYSLINVLICFSLYFASGFFSIVLLIALF
                     FFMSISFPTIFAVATKNLPLNQVKLGGSLLVMSIVGGAIMPIIIGFINDHYGTGAGYL
                     AMAPLFLYVAWYGFIGSKVRKNAKDF"
     gene            5733..>6115
                     /locus_tag="RJ267_001328"
     CDS             5733..>6115
                     /locus_tag="RJ267_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7389176.1"
                     /translation="MQKIFDAHLHLWDLEKIPISWIKDDEKLEQNYDFFRMKQEYKEF
                     EFIGAMYVEVNSDDLEKEALFALEQKKLHNLLFCLADFKHKEELSSFREVMHTSKKGA
                     KRLFEADFEEKIEILKTFNIPFEAC"
BASE COUNT         2039 a          735 c         1223 g         2118 t
ORIGIN      
        1 atattttgtt atattttttg tatataaata tatttttgta tatacgaaag gaaaaaaatg
       61 ggaattttaa aaggaacttt accggcttta cttactccat ataaagatga tggaagtatc
      121 aatgaaaaag aatttattcg ctattgtgaa tttggtattt ctaaaggctt gaacggattg
      181 ttttgtaatg gaagtgcagg ggattctcaa gctttgagcg tggaagagca agttaagtta
      241 atgaaactca ccaaaaaggc tacaaaaaat aatataccta tcatcacggg tattacctcg
      301 acaatttatg aaaacacttt tattttggcg caaaaagctt atgaattagg tcttgatgcc
      361 ttattacttg ctatgcctta ttattataaa ttgagtgaag atgcactttt tgaatatgta
      421 aaatatttag cttctgaagt gaaacttccc ttatatgttt ataatatacc tctttttgca
      481 ccagcactaa gcttaaaatt tatagaaaag gtttcaaagc ttgataatgt tgtgggtata
      541 aaagatagta gcggagatgc tttgctttta aatcatattt tagatgtagt acctagtaat
      601 tttgatgttt ttgtaggaag agaagaattt tatgtaggtg cattattagc aggtgtaaaa
      661 ggttctatga ctagcatagg tggagttttt ccagaactta tgagcgaaat ttacaaatca
      721 atcaatgaaa aaaatatagg cagagctttg ctaatacaaa aaagtttatt aaaggccata
      781 agatttggta tgagcatagc ttttcctatg ggttttgctt tgcttttaaa ggccagagga
      841 tttgaatttg taaatgctag tattcatcct ttatcacctg ctacaaaaga agaattaaac
      901 actcgctttg atgaagcaaa agagcttatt aaaactatag aaaaagaaac aggtataaaa
      961 ctatgaaagg atatattata gtcaatgaaa aagacaatat tgccacagct ttgcgtgact
     1021 ttaaaaaagg cgaaaaagtg gcaaatattg agcttttaaa tgatattgca agcggacata
     1081 aatttgcact aaaggatata aaaaaagatg aaattattat caaatacgca gaagctatag
     1141 ctagtgcaag ttgcgatatt agtacagggg aatgggtgca tatccataat actgcgggaa
     1201 ttagaggtcg tggagataag gaatgaaaat gaaaaagata atgggttata gaagggaaga
     1261 tggaaaattt ggtttaagaa ataaagtcat tatcatacca agtgtacatt gtgctaataa
     1321 agtgtgtgaa aatatagcta gaaaatgtaa tggagcagtt tatatcaacc atcagcatgg
     1381 ttgctcccag cttgaatttg atgctttaca aactagagat gttttaatag gtcatgggag
     1441 caatgccaat gtttttggtg ttttaattat agggcttggt tgtgaggtaa tacaagccaa
     1501 agcagtagca gaaaaaatca aagaagcaac gccttataaa aaggttgaat atttagtgat
     1561 acaagaatgt ggtggtagta aaaataccat tgaaaatggt atcaaaatag tcaatgaaat
     1621 gcttgaaagt gctgcaaaat tacaaaaaag tgaaggagat ttcagtgatt tgattttagg
     1681 cacagaatgc ggtggaagtg atagctatag cggacttagt gctaatcctg ctttaggaag
     1741 tttgagtgat tttgtaatcg atgagggtgg tgcggtaatt ttagcagaaa ctacagaact
     1801 tataggttgt gaagccatac tagctaagag agcaaaaaac gatgaaatag ctaaaaaggt
     1861 atatgataag attttagctt atgagaattt agtcaaatct tttcatgctg atattcgagg
     1921 agcaaatcct agcccaggaa atatggcagg cgggcttagt actatagagg aaaaatcttt
     1981 aggctgtgtt tataaggcag gaactagaac cttaatggat gtgattgatt atgctaagcc
     2041 tgtagtttct aaaggtttaa cttttatgaa tacaccaggc aatgatatag aacaacttag
     2101 tgctatggtt gcaggtggag caaatatttg tgtttttact acaggtcgtg gcactccaac
     2161 gggttctgct atcgtgccta ctatcaaaat gagttctaat actttttgtt atgaaaatat
     2221 gaatgatgct attgatatta acgcaggaag cattatagat ggggtaaaaa caaaagaaga
     2281 agtgcgtgat gagcttatag aattaatcgt gcgaatttca gatggagaat tggtaaaagc
     2341 agagcttaac gagcaaaatg atttttcagt ttggagactt gctacaactt gttaaagggt
     2401 aaagtgatga aacatgcaaa ttcaataaag ttagagttag tatgtaaaaa aatatcttgg
     2461 cgtattttgc ctttgattgt tttgatgttt tgtctttcta tgcttgatag gacaaatatt
     2521 agctttgtga aatctcatat agaaattgat gcaggcatcg gtgaggctgc ttatgctttg
     2581 ggtgctggaa tattttttat aggttatgcc atttttgaag tgccttcaaa tttatttttg
     2641 cataaattag gagcaaaaat ttggttgagc cgtataatga tcacttgggg tcttgtaact
     2701 atggcaatga tttttataca aggagaaata agtttttatg tattaagatt tttattgggt
     2761 ttaactgaag caggttttag tccaggcatt attttatacc ttagttattt tttcccagct
     2821 atatatcgat ctaaggttta tggaatttat caaatgggag ttccaattgc ttttgttttt
     2881 ggttctttaa ttagcggttt tatacttgat tatacaccaa atatatattt taaaaattgg
     2941 caatggatgt ttttaataga aggaggtatt accgttttag taggtatttt ttgtttattt
     3001 tatcttgatt cacatccaaa agatgcaaaa tggttagata taaaagaaaa agatattttg
     3061 ctaaaacata ttgaaatttc caatactaaa gctaaggatt attctataaa agatattttt
     3121 aaaagtattt tggtgtggaa atttgtattt gtttattttt gtattcaatt aagtgtttat
     3181 ggagtgcttt tttatttacc aagtaaaatt gcccaaatat tgcaaataaa tgtaggtttt
     3241 gaagttggac ttttaaatgc cataccttgg atttttgttt ttatcgcctt gccaatattt
     3301 acctcattgg ctgataaaaa acattcttgg aatttacatg cgattttatt tttactgcta
     3361 gcaagtttga gcatgatagc ttcaactttt gttacaaatt tggcggcatt tttatttttt
     3421 attagcttgg ctgctatagg ttttatagtc attcagccta tattttggaa tttgccaact
     3481 caagttttaa aaggaaaagg agccgcggct gctattgctc ttataggatc cttgggaaat
     3541 ttaggaggtt ttgtagctcc tactttaaaa acatatatag aaaatcattt tggagttgag
     3601 tttggactta tagtgttagc attgatagca attttaggtg tattggtatt aatacattta
     3661 aaaataactt taaatttaga taaaggagaa taaatggatt taaaaattaa aaataaggtt
     3721 tgtattatta caggaggggc taaaggtatt gggtatggta ttgctaaatt atgggcaagc
     3781 gaaggcggaa ttcctgtaat tttttcaaga tctatgccta aagagcacga taaagaatta
     3841 aaaaaattat ctagtgagta tgaattttat gaaattgatt taaaaaatta tgagcaaatt
     3901 gaaaagcttg taaaaaaagt tgctatcaaa catggtggaa tctatgctct tgtaaataat
     3961 gcaggtacaa atgataattt acatattgaa aatacaagta ctcaagattt gataaaatct
     4021 tatgaaaata atctttttca ttattatact atgaccaaag aatgtttgcc ttacattaaa
     4081 aaagaacaag gcagtatttt aaatatagtg agtaaaacag gcatcacagg acaaggaaga
     4141 acttcagctt atgcttcggc caaagcggct caaatgggtt ttactagaga atgggcttgt
     4201 gcttttgcta aggataatgt tagggtaaat gctatagctc ctgctgaagt tatgactcct
     4261 ctttatgaaa aatggctgca aaattttcct aatcctaaag agcaatatga aaaaatcgca
     4321 aaagctatac ctttaggcca tcgttttact accatagagg aaattgcaaa tacagcggtt
     4381 tttacactta gtccccttgc ttcacatact acagggcaaa ttttaatgcc agatggaggt
     4441 tatgtgcatt tagatagagc attaaattgg gatgaaaact aaggagtaaa aaatgactga
     4501 ttctaaaaat ataaaaatag ctattgtttt ggtaacttct cttttctttt tatggggagt
     4561 aagctatgga cttattgatg tgatgaataa aaattttcaa aatcatcttc atattagcca
     4621 gcatgaaagt ggctttttac agtttgctta ttttggtgct tattttatca tagccttacc
     4681 cgcaggttat atagccaata gattttctta taaaatggga atcatttttg gcttagctct
     4741 ttatgccata ggagctttgc ttattatacc tgctacaaat ttggcttctt ttcatttgtt
     4801 tttgtttgcg ttttttattt tagcttgtgg tattggttct ttagaaacta gtgcaaatcc
     4861 ctacatgaca aagcttggtg atgaaaaaaa tgcgagtttt agaatcaatg ctgcgcaaag
     4921 ttttaatggt ttggggcaat ttgtaggacc tattataggc ggagttttat ttttatctat
     4981 tactaaacaa gaagagggtg cgagtaaaga gcaaatcgag gctgcattgg tagctaatat
     5041 gggaaatgtc cagcttgttt atataggaat tgctgtcatt gttattttga ttttaattgc
     5101 ttttgttgca aataagcttc cagaaggaag tgcggtaagt gatgattata agcaaaaaga
     5161 tgattctaag cccatatatg tttttaaaca cagacatttt aacttagggc ttttagcgca
     5221 gtttttgtat atagccaatc aagttgcagc aggagctttt tttatcaatt atgttgtaga
     5281 acataatgaa ggtttaaaag atgcgcaagg tgcttattat ttttctatag ctttggttgc
     5341 atttatgcta gggcgcattg tttctactcc tttgatgaag ataatcaaag gtgaaaaaat
     5401 tttaggattt tattctctaa tcaatgtgct tatatgcttt agcttgtatt ttgctagcgg
     5461 gttttttagc atagtgcttt taatagcttt atttttcttt atgtctattt cttttcctac
     5521 tatttttgcg gtagcaacaa aaaatttacc tttaaatcaa gtaaaactag gcggttcttt
     5581 gcttgtgatg agcatagtag gtggagcaat tatgcctata attataggtt ttattaatga
     5641 tcattatggt acaggcgctg ggtatttagc aatggcacct ttgtttttat atgtggcttg
     5701 gtatggcttt ataggctcaa aagtgagaaa aaatgcaaaa gatttttgat gctcatctac
     5761 acctttggga tttggaaaaa atacctattt catggataaa agacgatgaa aaattagagc
     5821 aaaattatga tttttttagg atgaaacaag aatataaaga atttgaattt ataggtgcta
     5881 tgtatgttga ggttaatagt gatgatttag aaaaggaagc tttgtttgct ttggagcaaa
     5941 aaaagcttca taatcttttg ttttgtttag cggattttaa gcataaagaa gagcttagtt
     6001 cttttaggga agtaatgcac acgagcaaaa aaggagctaa aagactattt gaagcagact
     6061 ttgaagaaaa aatagaaatt ttaaaaactt tcaatatacc ttttgaggct tgtat
//
LOCUS       DAPIWQ010000099         5993 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.100, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000099 DAPIWQ010000000
VERSION     DAPIWQ010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5993)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5993)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5993
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.100"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(92..589)
                     /gene="msrA"
                     /locus_tag="RJ267_001329"
     CDS             complement(92..589)
                     /gene="msrA"
                     /locus_tag="RJ267_001329"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDV7389177.1"
                     /translation="MKNIVLGGGCFWCVEAVFERLKGVINTEVGYSGGKPNPSYESVC
                     NGDGNIEVVKINYDEKQISLLEILTLFFKIHDPTSIDKQGGDIGIQYRSIIFYENEED
                     KILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPDQGYCQAVIAPKLQ
                     KIQSD"
     gene            complement(630..1148)
                     /gene="ppa"
                     /locus_tag="RJ267_001330"
     CDS             complement(630..1148)
                     /gene="ppa"
                     /locus_tag="RJ267_001330"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HDV7389178.1"
                     /translation="MNLSKIKIGDIPNKINAVIEIPYGSNIKYEIDKDSGAIMVDRVM
                     ASAIFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     IEILEKAIKNYK"
     gene            complement(1158..1736)
                     /locus_tag="RJ267_001331"
     CDS             complement(1158..1736)
                     /locus_tag="RJ267_001331"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HDV7389179.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVA
                     SGSELGKTIDSFISKGNLVPLDVVINTIVYALKAAPTKTIIIDGYPRSVEQMMEFDKV
                     LSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDNEEVFYNRMKVYTEPLNEILDFY
                     QKKKLHFIIDGERTIEPIVADMKELIKKIQSI"
     gene            complement(1733..3484)
                     /gene="aspS"
                     /locus_tag="RJ267_001332"
     CDS             complement(1733..3484)
                     /gene="aspS"
                     /locus_tag="RJ267_001332"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HDV7389180.1"
                     /translation="MRSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASNARNEFVLITEGTIRPRGEGLVNPKLKTGEIEVVVSKLTI
                     ENESAVPPFAIADESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVIKVAETFLKDIFKACGKEIQTPFRQMQYKD
                     AMENYGSDKPDLRFDLKFIDVIDIFAKSNNEIFANIAKDTKKNRIKAIRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKKDGLKGPLCKFFSEEDLNELSKRCELEVGDVVF
                     FGAGAKKTVLDYMGRFRIFLANELKLIDPNALEFLWVVDFPMFEQNDDGSYSAMHHPF
                     TMPKNIDETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNIDEEQQKEK
                     FGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANSIREVIAFPKTQRAQCLMTDAPSPA
                     SNEAMRELGIKLRENIK"
     gene            3575..4435
                     /locus_tag="RJ267_001333"
     CDS             3575..4435
                     /locus_tag="RJ267_001333"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HDV7389181.1"
                     /translation="MQNKIDYKNIKKIGLVTRPNVSLDKEILKLQSILSIYKVELVLL
                     KESSEILDLPKYGLDDLFKISDFVISLGGDGTLISLCRKACEYDKAVLGIHAGHLGFL
                     TDFKVDEAENFFQAFFQGEFRIEKPYLLSIFLEDRQGKILEKLAFNDVVISKNNQASM
                     AHIEVFRKEKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFEIEIMAKDCMLCIDGQENYKMNDFKSIKVGLSDKNVALIHPKNRDYFQ
                     ILKEKLHWGN"
     gene            4435..5958
                     /locus_tag="RJ267_001334"
     CDS             4435..5958
                     /locus_tag="RJ267_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7389182.1"
                     /translation="MINRIFMKENLGFKKAELEISKGLTVFTGLSGAGKSVLFKGILS
                     AFSLSESEAKIVEIEVDDKLDLESFGIESEEENVFKLLKEKNTKYFINNQSIAKKSLQ
                     NLSKTFIKYLSAKENNEFGNEKFLNLLDALEMQENTNFISFLEDFKKDFNAYSQISNE
                     LNAILEEEKKVEELKELARAQIEKISSINPKIGEYEELLILKKKLSKKDKLEEAWSKA
                     ERIFELEKVVIEALNLSEVDASFFSECLNELRVICENQKMEDLDFDVEALLDRIENLS
                     YLIKRYESIENALEVLKQKKYELEHYENLSFEKKELEKKFQELKQKLEEKAQILTQTR
                     KKNLKKLEKCLNNYLKDLYMKDASLTLKENEKISILGKDEIMLDINLAHLKNLSSGEL
                     NRLRLAFIATECNILNAGKGILFLDEIDANLSGKEAMSIAKVLEELSKFYQIFAISHL
                     PQLSSKAHNHFLVEKNGEESKVKKLDQEERIKELARMVSGELVSDEAIEFAKTLFKN"
BASE COUNT         2008 a          890 c          973 g         2122 t
ORIGIN      
        1 aagttctatt tttaagtact ttgaaaagaa aatcacagcg tgaaaaggct gtgaataaag
       61 ttgaaatttt tttaacctta aaaagatgaa attagtctga ttgtattttt tgcagttttg
      121 gagctattac agcttgacaa tatccttgat cgggattatt tataaaataa tgttgatgat
      181 agttttcagc tttgtaataa gtttgcaatc ttgaaatttt agtaactatt tttttgctaa
      241 atattttttg ctgttcttcg atgaaatttt gagctaaaat tttatcttct tcattttcgt
      301 aaaagattat tgagcgatat tgtataccaa tatctccacc ttgtttatct atacttgttg
      361 gatcatgaat tttaaaaaag agtgttaaga tttcaagaag agagatttgt ttttcatcgt
      421 aatttatttt gacaacttct atgttgccat caccattaca cacgctttca tagctaggat
      481 ttggttttcc tccgctatat ccaacttcag tattgattac accttttagg cgttcaaata
      541 cggcttcaac acaccaaaaa caaccaccac ctaaaacgat atttttcatt gcgagttttc
      601 cttgagttta gccctttgaa gggctaggat tatttgtagt ttttgattgc tttttctaaa
      661 atttcaattg cagctttttc atctttgaaa tcttgcactt taacccattt atttggttct
      721 aaaattttat aagtttcaaa gaaatttttg attttattta aagttgcttg tggtaaatcc
      781 gtgtaagttt ttatattgtc atatcttgca tctatttttg aatttggaac cgcaagaagt
      841 ttttcatcca ttccgctttc atcttccatg attaaaacac cgattaagcg gcaaggaatc
      901 acggctccag cttggatagg atattcatta agcactaaaa tatctacagg atcaccatca
      961 tcagccaaag tattggcaat aaaaccatag tttgctgggt aaaatatcgc actagccata
     1021 acgcgatcta ccatgatagc accactatct ttatcgattt cgtatttgat atttgagccg
     1081 tatggaattt cgattacggc attgatttta tttggaatat ctccgatttt gattttgctt
     1141 aaattcattt tttctcctta tatactttga atttttttaa tcagttcttt catgtctgca
     1201 acgataggtt cgatagtgcg ttccccatcg ataataaaat gaagtttttt cttttgataa
     1261 aaatctaaaa tttcatttaa aggttctgta taaactttca ttctattata aaacacttct
     1321 tcattatcat ctgcaccacg atttctgcct aaaactcttt ctttggcaac ttcttcgctt
     1381 actcttactt ctatgacacc tttaagacaa atttcatttt gctcacttaa aaccttgtca
     1441 aattccatca tttgttctac gcttcttgga tagccatcga tgatgatagt tttagttgga
     1501 gcagctttta gagcataaac tatagtattt ataacaacat ctaaaggaac aagattgcct
     1561 ttggagataa aactatctat agtttttcca agctcactcc cgcttgctac ttcagctctt
     1621 aaaagatccc ctgttgaata gtgtgtgata tttgtcgcat ctgcttgtgc gattaaacta
     1681 gcatcggtag tttttccact acctggtgca cctatgatta aaaacaattc tttcatttta
     1741 tattctccct taatttgatt cctaattctc tcattgcttc attgctagca ggcgatggcg
     1801 catctgtcat taagcattgc gctctttggg tttttggaaa ggctataacc tctcttatgc
     1861 tgtttgctcc tgtaactagc atgatgagtc tatcaagtcc tatagcgatg cctccatgtg
     1921 gtggagcgcc aaaacttaaa gcatcaagca agaaaccaaa tttttctttt tgttgttctt
     1981 catcgatatt taaaagttta aatacttttt gttgaatatc atttttatgg attcttatac
     2041 tacctccacc tagctcaacg ccatttaaca ctacatcata agcaatagat gaaatttctt
     2101 ctaaatcagt ctcatcaata ttttttggca tggtaaaagg atggtgcatc gcagaataac
     2161 ttccgtcatc attttgctca aacataggaa aatcaacaac ccataagaat tccaaggcat
     2221 ttggatctat aagttttaac tcgttggcta agaaaattct aaatcttccc atataatcaa
     2281 gcacggtttt tttagctcct gcaccgaaaa ataccacatc tcctacttca agctcacagc
     2341 gtttgcttag ctcatttaaa tcttcttcgc taaagaattt acaaagtgga cctttaagcc
     2401 catctttttt aacttgtatg aaagctaagc cttgggcgcc aaatttacgc acaaattctt
     2461 caaatctttg catttgtctt tttgaaaaaa tagtatcgcc ttttggaacg cgtatggctt
     2521 tgatgcgatt tttctttgta tctttggcaa tatttgcaaa aatttcatta tttgacttag
     2581 caaaaatatc aatcacatca ataaatttaa gatcaaatct taaatccggc ttatcagagc
     2641 cataattttc catagcgtct ttgtattgca tttgtctaaa aggggtttga atttctttgc
     2701 cgcaagcttt gaaaatatct tttaaaaaag tttcagctac cttgatcaca tctttttgtt
     2761 cgcaaaagct catttcaaca tcaatttgtg tgaattcagg ttggcgatca gctcttaaat
     2821 cttcatctct aaaacatttt gcaatttgaa aataacgatc aaaaccgcta cacattaaaa
     2881 gttgtttgaa aagctgaggg ctttgtggaa gagcataaaa ttcaccctga tgcacacgag
     2941 aaggcacgag ataatctctt gcgccttcgg gagtagcttt ggtaagaata ggggtttcaa
     3001 cttctaaaaa tcccatattt gccaaagaat ttctagctgc tatacaagct ttagaacgca
     3061 aggcaaaatt ttcataaagt ttaggatttc ttaaatctaa aaagcgatat tttaagcgta
     3121 attcttcatt tacactttca tcagcgatag caaaaggagg tacggcactt tcattttcta
     3181 tggtaagttt agaaacaact acttcgattt ctcctgtttt taacttagga tttacaagtc
     3241 cttcgccacg cggacgaata gtaccttctg taataagtac aaattcattt cttgcattgg
     3301 aagcgatttc atgagcttct ttactatcat ttggatcgca aacaagttgg ataataccgc
     3361 ttctatctct taaatctata aaaataactc caccatgatc gcggtagcta tttacccaac
     3421 cgcaaagttt aacgctttga ccaacatggg aaattcccaa gtctgtatta taatgacttc
     3481 gcaaatttat tccttgaaaa agatttttta agataatgag caaaattata gtatttttat
     3541 tcttttgctt tgctaagatt tgatataatt ttttatgcaa aataaaatag attataaaaa
     3601 tattaaaaaa attggacttg ttacgcgacc caatgtgagt ttagataagg aaattttaaa
     3661 acttcaatcg attttatcta tatataaagt tgaacttgta ttgcttaaag aaagttctga
     3721 aattttagat ttgccaaagt atggattgga tgatttgttt aaaatatccg attttgttat
     3781 ttctttaggt ggagatggaa ctttgatttc tttatgccgt aaagcttgtg aatatgataa
     3841 agcagtttta ggaattcatg ctggacattt aggtttttta acagatttta aagttgatga
     3901 agctgaaaat ttttttcaag ctttttttca aggagaattt agaatagaaa agccttattt
     3961 gttaagtatt tttttagaag ataggcaagg aaaaatttta gaaaaattgg cttttaatga
     4021 tgtggttatc agtaaaaaca atcaagcttc tatggctcat atagaagttt ttagaaaaga
     4081 aaagaaattt aatgaatatt ttggagatgg gcttattgtt gcaactcctg cgggttcaac
     4141 agcttataat ttaagtgcaa atggacccat agtttatact ttagctcaag cttttatctt
     4201 aactcctgtt tgttctcatt ctttaacaca acgccctatt gtcttgccaa aaggttttga
     4261 aatagagatt atggcaaagg attgcatgct ttgcattgat gggcaagaaa attataaaat
     4321 gaatgatttt aaaagtataa aagtgggttt aagtgataaa aatgtggctt taattcatcc
     4381 aaaaaatagg gattattttc aaattttaaa agaaaaatta cactggggaa attgatgata
     4441 aatagaattt ttatgaaaga aaatcttggt tttaaaaagg ctgagcttga aatttctaaa
     4501 gggcttaccg tttttacagg cctaagtgga gctggaaaat cggtcttgtt taaaggaatt
     4561 ttatccgcat tttctttgag tgaaagtgag gctaaaattg tcgaaataga agtagatgat
     4621 aagttggatt tagaaagttt tggtatagaa agtgaagagg agaatgtttt taagctctta
     4681 aaagaaaaaa acacaaaata ttttattaac aatcaaagca tagcgaaaaa aagtttgcaa
     4741 aatttaagta aaacttttat taagtattta agcgcaaagg aaaataacga atttggaaat
     4801 gaaaaatttt taaatctctt agatgcctta gaaatgcaag aaaatacaaa ttttatttcc
     4861 tttttagaag attttaaaaa agattttaat gcttatagtc aaatttctaa tgagcttaat
     4921 gcaattttag aagaagaaaa aaaagtagaa gaattaaaag aactagctag agcacaaatt
     4981 gaaaaaattt caagcattaa tcctaaaata ggtgagtatg aagagctttt aatacttaaa
     5041 aaaaagcttt ctaaaaaaga taaattagaa gaagcttgga gtaaggcaga gcgtattttt
     5101 gagcttgaaa aagttgttat tgaagcttta aatttaagcg aagttgatgc gagttttttt
     5161 agtgaatgtt taaatgaatt gcgtgtgatt tgcgaaaatc aaaaaatgga agatttggat
     5221 tttgatgtgg aggcgctttt agatcgcatt gaaaatttat cctatcttat caagcgttat
     5281 gaaagcatag aaaatgcttt agaagtttta aaacaaaaaa aatatgagct agagcattat
     5341 gaaaatttaa gttttgaaaa aaaagaactt gaaaaaaaat ttcaagaatt aaaacaaaaa
     5401 ttagaagaaa aagcacaaat tttaactcaa acaagaaaga aaaaccttaa aaaattagaa
     5461 aaatgtttaa ataattatct taaagatctt tatatgaaag atgcaagttt gacgcttaaa
     5521 gaaaatgaaa aaatttcaat tttaggcaaa gatgagataa tgctagatat taatttagct
     5581 catttaaaaa atttaagttc gggtgaatta aatcgcttaa gacttgcttt tatagccaca
     5641 gaatgtaata ttttaaatgc aggcaaaggg atattatttt tagatgaaat tgatgcaaat
     5701 ttaagtggaa aagaggctat gagtatagct aaggttttag aggaactttc taagttttat
     5761 caaatttttg ctatttctca tttgcctcaa ctttcctcta aggcacataa tcatttttta
     5821 gttgaaaaaa atggtgaaga aagtaaggta aaaaagcttg atcaagaaga aagaattaaa
     5881 gaacttgcta ggatggtaag tggagagctt gttagtgatg aagcgatcga atttgctaag
     5941 accttattta agaattaagc ggatttttta ttttgctatg ttaaaatata taa
//
LOCUS       DAPIWQ010000100         5921 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.101, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000100 DAPIWQ010000000
VERSION     DAPIWQ010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5921
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.101"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            159..965
                     /locus_tag="RJ267_001335"
     CDS             159..965
                     /locus_tag="RJ267_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HDV7389183.1"
                     /translation="MEVKWSRDFSIKNMQLDKQHELIFEITNLANDLALNIQDNNTQH
                     KNDLKQILVKLFQYIKIHFKDEEKFMESIDFPLIEEHKKSHQILVEKTKKLLEHSDNI
                     VKMSQELSILTKDWILDHFANEDLWIANFTKKALHLQEIHYTLEQYIKLKSIKQDLRA
                     EKTYDYICNCSLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNA
                     IFEDALQNHHFTTQKNDMGGGIDEFSSKNLRNFQSFRKFKSRTSKHRTNS"
     gene            880..2751
                     /locus_tag="RJ267_001336"
     CDS             880..2751
                     /locus_tag="RJ267_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HDV7389184.1"
                     /translation="MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKP
                     AKTKTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKTQSFPFTVKLRSNSNLTHLK
                     ASINLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSI
                     KEIELEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIY
                     RILGKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHT
                     GYCIANNLKLSQIGLKTTGSIKTNIDENINLEITNFDISDDAIKSGIVNVQASNIKVN
                     GNVGATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKN
                     VFVENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSD
                     TECENLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPNAIEMKFSNLY
                     HDIIKKYNHLSISYKKFIKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPN
                     TNTNLELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS"
     gene            complement(2755..4392)
                     /locus_tag="RJ267_001337"
     CDS             complement(2755..4392)
                     /locus_tag="RJ267_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HDV7389185.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNN
                     GFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDP
                     SKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKQGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR"
     gene            complement(4396..5280)
                     /locus_tag="RJ267_001338"
     CDS             complement(4396..5280)
                     /locus_tag="RJ267_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HDV7389186.1"
                     /translation="MISSSDWNLNTTATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNA
                     TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDAKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANY
                     GTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSD
                     GDSSGSGSTEDGDKEEKA"
     gene            complement(5334..>5921)
                     /locus_tag="RJ267_001339"
     CDS             complement(5334..>5921)
                     /locus_tag="RJ267_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HDV7389187.1"
                     /translation="LNKTQVVQNKENNANFNNNTTNKETFTQEQTKTHSENVDKNSLD
                     ELNSLVKDLNKVTQNNARNITPKETLQYFSQDLKEAVDQYKAPITKLSITLNPNNLGE
                     VEVTLIQRGNNLHINFNSNANAMNLFIQNQAEFKNSLVNMGFTGLEMNFSDQGKREQN
                     QNQGKNRSGYGFKDALDGKNESEKVNLELVLAKYF"
BASE COUNT         2152 a          983 c          786 g         2000 t
ORIGIN      
        1 aatatactta aaaagccttg agttgttaag attcaatata taaatttgca atcaatccat
       61 tgtttttata agaattttaa aaattcattt gtcaaattat tattttattt tcaaaaaata
      121 cgatataaaa ataattatta catccaaaaa ggaaaaatat ggaagttaaa tggagtagag
      181 attttagcat taaaaatatg caattagaca aacaacacga actaattttt gaaattacca
      241 atcttgcaaa tgatttagct ctaaacattc aagataataa tacacaacac aaaaatgatt
      301 taaaacaaat tcttgtaaag ctatttcaat acatcaaaat tcattttaaa gatgaagaaa
      361 aatttatgga aagcattgat tttcctttga ttgaagaaca taaaaaatct catcaaatat
      421 tagtagaaaa aaccaaaaag cttttagagc attcagataa tattgtaaaa atgtctcaag
      481 aactttccat attaaccaaa gattggattt tagatcattt tgctaatgaa gatttatgga
      541 tagctaattt tacaaaaaaa gccctacacc ttcaagaaat ccattatacc ttagaacaat
      601 acataaaact aaaatcaatc aaacaagacc taagagctga aaaaacctat gattatattt
      661 gcaattgttc tttgcgtatc catgcagttc cacagactat acatcaagag cttgttagca
      721 aagaaaatac cttaaagtgc gaaaaatgtg ggcaaatttt agttcatttg gattattttg
      781 atttgaatca aaatttcgaa aaattcaatg ctatttttga agatgcacta caaaatcacc
      841 atttcacgac tcaaaaaaat gatatggggg gggggataga tgaattttca agtaaaaacc
      901 ttagaaactt tcaatccttt cgaaagttta aatcacgaac aagcaaacac agaacaaatt
      961 cttgatttta gagttataga ttttaaactt ctgtgttcta gtgtaaaacc agcaaaaaca
     1021 aaaacttatg aaagaaagga ttttgactta ttttatgcag atgatttttt tgtaaaaaac
     1081 tacaatacca tagtgcaaaa atttcttata gaaatttacc caaaaaccca aagttttcct
     1141 tttacagtca aacttagatc caactccaac ctaacccatc taaaagccag tatcaacctt
     1201 acagaaaatt ttaaatatta tcctaattta aaatttgata ttttacaaaa tatctacaaa
     1261 ataatgatca aacaaaaatt tttaatctta agacttgata aaaatttatt tgacaagatt
     1321 gatgatttta tcttatcaat acaaaaaagt ccatctatta aagaaataga gcttgaaatt
     1381 gccaaaggtg tagataagat tgaacataaa agtgatgaaa ttatttatca tagagatgtt
     1441 aacgaagaat gttttgacga aaatattaac tatgatgaag gaaactactg taaacctatt
     1501 gaaaaaaatg agctactttt tgaatacatt tatagaattc ttggaaaaga aggacgaaat
     1561 ttaagaggag agatacttca tttaaatcca atagcctttc ttgataatcc ttttatcata
     1621 aaagatgaaa gcatttacac agaagaatta gaagatagaa ttaaatattt tagcgccaat
     1681 tatggatttt taaacaaaga tcatacagga tattgtatcg caaataattt aaaattatca
     1741 caaatagggc ttaaaacaac cggttcaatc aaaacaaata tcgatgaaaa tataaactta
     1801 gaaatcacta attttgatat aagtgatgat gctattaaat caggtattgt aaatgttcaa
     1861 gcttcaaata taaaagtaaa tgggaatgtt ggagcaacaa aactttatgg aaaaaatatc
     1921 agtatcaaag gcttaactca tgcaaaaagc gaaatttttg cacaagatat ttttattaca
     1981 acacacaaag gaactttgca agctgacact gtatatataa aaaatttaga aaatgggaca
     2041 attatagcta aaaatgtatt tgttgaaaac tgcatgggtg gaaaaataga agcagaaaat
     2101 atttatattt gcaatttact aacggataat actttatatc caagaaaaaa tctaatcata
     2161 acaaacaata taaaatttaa aaacaatatc gtagtttcac cactagtttc tattgaaaac
     2221 aactcagata cagaatgcga aaatcttaaa aatctaagcc ttaaaataaa aagtaagctt
     2281 gatgacacca taagcaaaat gcaaaattac tatgattatc taatcaaaaa tcaaatcaaa
     2341 atcatcaaac ttcaaaagac taaaaatcct aacgccatag aaatgaaatt ttcaaatctt
     2401 tatcacgata tcataaaaaa atacaatcat cttagcattt cgtataaaaa atttataaaa
     2461 ttaaaatatc aaattgatgc gaaattaaat ttcttaaatg aaatggttta caatgtaaaa
     2521 atatacataa aagccgaaaa tatcggagag gataattttt taaaatttta tcctaacaca
     2581 aacaccaacc ttgaactaaa acatcatata aatttaaaag actatgaaaa ggttttatat
     2641 cttgaaaaag gacagcaagt aagttatatt aaatcaagcc ataattatag cgaaagcgac
     2701 atagaagaaa ttaaaattat ttttgaaaaa ttagaaaaag ataattccta agaattatct
     2761 tttcatatta atggcttttt gtatcatctg atcacttgta gtgatacttt ttgagcttgc
     2821 atcaaaggct ttttgagtta cgataaggtt tgaaagctct gcgcttaaat caacatttga
     2881 ttgttctaag aatccgcctt taaatttagc tgtattaaca acttgaccat ctttcataat
     2941 aaaacttgca tcaccgctat ttgccgttgc tgcaaaaata ttatctccca tagcaactaa
     3001 tccttgctca ttgataaaat tatataaagc aagctttcca actatggcat ttttaccatt
     3061 gctaaattgc gcaacaatac ttccatcatc ggatatatta tattgttcaa aaaacccttc
     3121 agctacacca tcttgttgtg taactacatt tttttcgacg ccttgtttaa tataaatccc
     3181 actataaccc gaaccaggct tgttagcatc ataaggagaa cctaaatcaa tattaattgt
     3241 tccaccattt ggatttgcaa tgcttgtaat attgttttga agcaaagcac catttttatc
     3301 aaaaaccata tttccttcag tcggattgcc tacggcattg ccattagaat cataaatttg
     3361 tgcaatagct ttatattgta tattatcgcc ttcttgcggt aaaactcttt caagtgtaac
     3421 ccttaaagtg cttttacttc catctgcatt ataaataggg gattctaaaa tatctttatt
     3481 ggctttttgt tgctctgttg aaatttgagc tgtatcaagc ttgatgctat tttcatccaa
     3541 tccttttaaa tcaagctcgt tacttttaaa atttagattt tcatctaaag tcgcttcaaa
     3601 gcttgttttt acgccattat catcagtgaa atttaaaata atcctatcac ccgctttagc
     3661 actaaacaca tcttctttgc taacactacc actaactaca tattttccat cttcagtttt
     3721 tgtaatgtta aatttactag gatcaagatc tactttaact acttctgttg ttgtgttagt
     3781 atttaaactt ccactccatt ttacattttg agttacttga ggaggtaaat acatattcac
     3841 aggtacttta atagcccctt gagaagcggt tgtgcctata ctgaaagaat tatttgaatt
     3901 tacagtaaaa ccattattta ccggagttcc tgtgttaaga taatccccca taagcccagc
     3961 aactctatcg ctatagttaa taccagtaaa agcaggattc attgttccta aaacaaaatt
     4021 tccataagaa tctaccaaat atccattggc atctcttcta aatgatccat ttctagtata
     4081 gtaagcattg ccatcagccc ctaaaacccc aaaaaatcct tttccttgca aagccacatc
     4141 aaattcgcca tcacttgcaa caggagaacc ctgttcgaaa acaacttgag aagatgctgc
     4201 accgctacca taaccacctt gagcagggtt ggttgattgg gttgttatgg tagtataaaa
     4261 aatatcttta aattgagcat cagagtattt aaagcccgtg gtattgacat ttgctatgtt
     4321 attagcagtg atatcaatac caaagctatt gctttttact ccagaaatcc cattataaaa
     4381 tgaattcatc atggcttatg ccttttcctc tttgtcgcca tcttctgtag atccagaccc
     4441 agaagaatct ccatcgcttg aaccaccact tgagtctcca cttgaaccgc ttcctccagt
     4501 agatgaagat gaaccaagct tataatctgt tatttcttgt attgcatcaa aaggaacttc
     4561 ttgtccagcc atttttgcat aggcaacacc atctttaaaa acaacacctt cgataggata
     4621 agttccgtaa tttgcagtga ttttttcacc atttttatta ttataaacca ttttaacagt
     4681 gtactcacca tcacctgcat aaaccccatc gttatttctt cctggccact ccatagtaaa
     4741 taaaccttga gaaatagatt tagcatcgct tttttcactg aaaacaagtt tattattgct
     4801 atcataaatt tctagcgtaa caccgttttc atcagaatct tcaggcaaat acattttaag
     4861 agcgataagc tcatctgcac ctgtaagttt gattttatta tctgaaacag ttgccatttt
     4921 accaatagcc cctaaagctg aagtactcat acttgtacta aaagaatcag aaagcttttg
     4981 catagtttca accatttttt gcatagttgt attggtattt tgctgcattt caagtgcact
     5041 aagctgtgaa gtttgagtaa gcattttatc gctatccata ggatctgttg gatcttgatg
     5101 ttgaagctct atcaaaagaa gttttaaaaa cgcatcctta tctaaggtag catttggatt
     5161 gctcactatt cctgagctac tgcttgaatc tgttctagtt gttccactag tacttcctga
     5221 agaagtagta cctgaagttg tagcagtggt atttaaattc caatccgatg atgatatcat
     5281 tataaactcc tttttattta gttttttatt atttaagcaa taagtgttcc aatttaaaaa
     5341 tacttcgcta aaacaagctc tagattgact ttttcacttt cattttttcc atctaaagca
     5401 tctttaaaac catatccact acgatttttt ccttgatttt gattttgctc tcttttacct
     5461 tgatcactaa aattcatttc aagtccagta aatcccatat ttacaagaga atttttaaac
     5521 tcggcttgat tttggataaa caaattcatt gcattggcat tggagttgaa attgatatga
     5581 aggttattac ctctttgtat caaagttacc tccacttctc caagattatt aggatttaga
     5641 gtgatactaa gtttagtaat aggcgctttg tattgatcca cagcctcttt taaatcttgt
     5701 gaaaaatact gcaaagtttc tttaggagtg atattgcgag cattgttttg tgttacttta
     5761 tttaaatctt tgactaaaga atttaactca tctaagctat ttttatctac attttcactg
     5821 tgcgtttttg tttgctcttg agtaaaagtt tctttattag tagtattatt attaaaattt
     5881 gcattattct ctttgttttg aactacttga gttttattta a
//
LOCUS       DAPIWQ010000101         5837 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.102, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000101 DAPIWQ010000000
VERSION     DAPIWQ010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5837)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5837)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5837
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.102"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            67..2157
                     /gene="cfrA"
                     /locus_tag="RJ267_001340"
     CDS             67..2157
                     /gene="cfrA"
                     /locus_tag="RJ267_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent ferric enterobactin receptor
                     CfrA"
                     /protein_id="HDV7389188.1"
                     /translation="MKKICLSVCAIGLLSSYAISQNVELDSSIVSASGFTQDIKEAPA
                     TINVISKKELQSKPYRDVAEAIADIPGVDLYASKGKTGSYNITMRGITGYTLVLIDGR
                     RQGIGGEVGPNGFNEISNSFLPPISSIERIEVIKGPMSTLYGSEALGGVVNIITKKVS
                     DKWETSVSLDALLNENKDWGNTYGTSIYSSGPLMNDKLGLTLRFREFYRQQSNVEFTN
                     GSGQRVQGDQAQSPTKANNFNIGTRISYLANDYNTFIFDIDFSRNHYDNKQGQLGTIT
                     SPGSAPDSLTGGYADIMEVDKFVTYLSHEGVYENFSITSGLQYNRVSNNGREVVGQAN
                     QPFLGQNRDIVAEDIILDTKSVIPLGQSHILSAGGEYRLEKMQDKIANPTNFDQYLLA
                     IFAEDEYSIKDNLRLTFGARYNHHEIFGNNISPRAYLVYNPTDELTLKGGVSTGFRTP
                     YANRLINGAYNYSGQGRFPIYGNPDLKEETSLNYEIAAIYNNDLFYVSATGFLTNFKD
                     KISTQRYDKGNMIPGIGTCDADRCFKAINHGKVEYKGIELGAGISPLDNLNVNFAYTY
                     LDSEVKEAQDKSVIGKPEQDSLKHNIMLKTEYSFYNKITPWIKGEWQIDRYMGDTNIN
                     REYYKDIFFASMGVRYDINKQWSINAAIYNLFNKSFTDGWESYQNSGAPTWVNTYNRI
                     EEGRRMYISINGSF"
     gene            2460..3251
                     /locus_tag="RJ267_001341"
     CDS             2460..3251
                     /locus_tag="RJ267_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HDV7389189.1"
                     /translation="MKSRDKKDLILESIIQTYLLDNAPIGSNELNSNLCIPASTIRVY
                     LKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWEKEQDKNIHIKNESFLKELSKEFE
                     IYCLVYGGRSLVLKEVLDLNTKFIVLDFEDEELVLKYEKEAWNFLQSLIGLDLSSIEK
                     IALRVHFIDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCQIHRHFKESLEF
                     EPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
     gene            3248..3778
                     /gene="grpE"
                     /locus_tag="RJ267_001342"
     CDS             3248..3778
                     /gene="grpE"
                     /locus_tag="RJ267_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HDV7389190.1"
                     /translation="MSEQKQEFENENAENSEHLQDENLQNIEDVEQNKLQKDYDELKD
                     KYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECQDEISLKI
                     KEGVQNTLDLFLKKLEKHGVALIKDEKEFDPNLHEAMFHVDSENHQSGEVVQVLQKGY
                     KIADRVIRPTKVSVAK"
     gene            3800..5671
                     /gene="dnaK"
                     /locus_tag="RJ267_001343"
     CDS             3800..5671
                     /gene="dnaK"
                     /locus_tag="RJ267_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HDV7389191.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVTDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLANEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVSDAGLKKDEIKEIVMV
                     GGSTRVPLVQEEVKKAFNKDLNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLSELGEKVAAADKENIQKALDDL
                     RETLKNQNASKEEIESKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
BASE COUNT         2166 a          769 c         1142 g         1760 t
ORIGIN      
        1 tattaaatta ataattatta tcataatatt ttgatttcta aatcaatatt tgacaaaagg
       61 agaaaaatga aaaaaatatg tctatcagtt tgcgccattg gtctcttaag ctcctatgcc
      121 atatcgcaaa atgtagaact agatagctca atcgttagtg cttctggctt tacccaagat
      181 attaaagaag ctcctgctac tatcaatgtt atcagtaaaa aagaattaca aagtaagcct
      241 tatagagatg ttgcagaggc tatcgcagat atcccaggcg ttgatttata tgctagcaag
      301 ggaaaaacag gttcttataa tatcactatg aggggtatta ctggatatac tttggttttg
      361 attgatgggc gtcgtcaggg tattggcgga gaggtgggcc ctaatggttt taatgaaatt
      421 tcaaattctt tcttacctcc gatttctagt atagaaagga tagaagttat aaaaggccct
      481 atgagtactt tatatggctc tgaagcttta ggcggggtgg taaatatcat taccaaaaaa
      541 gtaagtgata aatgggaaac ttctgtaagt ttggatgctc ttttaaatga aaataaagat
      601 tggggtaata cttatggaac gagtatttat tctagtggtc ctttgatgaa tgacaaattg
      661 ggtctaacac ttcgatttag agaattttac agacagcaat ctaatgttga atttacaaat
      721 ggaagtggac aaagagttca aggagatcaa gctcaaagtc ccacaaaagc aaataatttt
      781 aatataggaa caagaattag ttatttagct aatgattata atacctttat atttgatata
      841 gatttttcaa gaaatcatta cgataacaaa cagggtcaat taggaaccat cacaagccca
      901 ggtagtgcgc cagatagctt aacgggtggt tatgcagata ttatggaagt tgataaattt
      961 gtgacttatt taagccatga gggtgtttat gaaaactttt ctatcacttc tggtttgcag
     1021 tataatagag taagcaataa tggacgcgaa gttgtaggac aagctaatca gccattttta
     1081 ggacaaaata gagatatagt cgcagaagat attatcttag atactaagtc tgtcattcct
     1141 ttgggacaaa gtcatatttt aagcgcaggt ggtgaatata ggcttgaaaa aatgcaagat
     1201 aaaatagcta atccgaccaa ttttgatcag tatttattgg caatatttgc agaggatgag
     1261 tacagcataa aagataactt aagattgact tttggagcaa gatacaatca tcatgaaatt
     1321 tttggaaata atatttcgcc aagagcttat ctggtttata atcctactga tgaacttact
     1381 ttaaaaggcg gtgtatctac gggttttagg actccttatg caaatcgttt gataaatgga
     1441 gcttataatt atagtggtca aggtagattc cctatatatg gaaatcctga tttaaaagaa
     1501 gagacatctt taaattatga aatagcagct atttacaata atgatttgtt ttatgtttct
     1561 gcgacaggtt ttttaacaaa ttttaaagat aaaatttcaa cccaaagata tgataaaggc
     1621 aatatgattc caggaattgg tacttgcgat gctgatagat gttttaaggc aatcaaccat
     1681 ggcaaggttg aatataaagg tatagagctt ggagcaggga taagccctct tgataattta
     1741 aatgtaaatt ttgcttatac ttatcttgat agtgaggtta aagaagcaca agataaaagt
     1801 gtgataggta aacctgagca ggatagttta aaacacaata tcatgttaaa aactgaatac
     1861 agcttctata ataaaattac cccttggata aaaggcgaat ggcaaataga tcgctatatg
     1921 ggtgatacta atataaatag ggaatattat aaggatatct ttttcgcttc tatgggtgtg
     1981 cgttatgata tcaataagca atggagtatc aatgcagcta tttataatct ttttaacaaa
     2041 agttttacag atggttggga atcttatcaa aatagcggtg ctcctacttg ggtcaatact
     2101 tacaatcgta tagaagaagg aagaagaatg tatatttcta tcaatggtag cttttaagct
     2161 ttaatagaaa aactaaaggg cttttaaagt cttctttagt tttttatttt aataccctat
     2221 acctttaaaa aactagacaa tcaattcaat ttaaaatttt catcttattt ttatcgttgc
     2281 attttcaatc ttaaaagata gcttatcctt ataaaaaagt aactaataaa actttagtca
     2341 tatagactaa ataaaattaa gtatattttt tatatttaca cttgacaaaa taacactcaa
     2401 tgttgtataa tatatctagc aatcaaaaaa tagagtgcta aaaatttaag gaaagagcta
     2461 tgaaaagccg agataaaaag gatttgattt tagagtctat tatccaaact tatcttttgg
     2521 ataatgcgcc tattggttct aatgagttaa attcaaacct ttgcatacct gcttcgacta
     2581 tacgcgttta tcttaaaaga cttagcgatg agggtttgat cactcagctt catataagta
     2641 gtggtagaat tcctactatt ttaacgatgc aaaattattg gcaaagtttt tgggaaaaag
     2701 aacaagataa aaatatccat atcaaaaacg aaagcttttt gaaagagtta agtaaagaat
     2761 ttgaaattta ttgtcttgtt tatggaggta gaagtttagt acttaaagaa gtactagatc
     2821 ttaatactaa atttatagtg cttgattttg aagatgaaga gctggtttta aaatacgaaa
     2881 aagaagcgtg gaatttttta caaagtctta tagggcttga tctttctagt atagaaaaaa
     2941 tagctttgag agttcatttt atagatcttg tagaaaaaat agctagctta agacaaaatt
     3001 tgatttgcta tagaagcaat gaagaaagag cttatcaaat ttatcaaaat gatgaatttg
     3061 ttaagctctt agattgtcaa attcaccgtc attttaaaga aagtcttgaa tttgaacctt
     3121 tatttaaaga aggttttatg gggcttaagg tggatgcgca gtttttgggc gaagatgtaa
     3181 atattatctt agcaggtagt gtttatacgg attataaaaa aatattacaa tatataaagg
     3241 aggcggcgtg agcgagcaaa agcaagaatt tgaaaacgaa aacgcagaaa attctgaaca
     3301 tttgcaagat gagaatttgc aaaatatcga agatgttgag caaaacaaat tgcaaaaaga
     3361 ctatgatgaa ttaaaagaca aatatatgcg tgcaaacgct gaatttgaaa atattaaaaa
     3421 aagaatggaa aaagaaaagc taagtgctat ggcttatgca aatgaaagct ttgcaaagga
     3481 tttgcttgat gttttagatg ctttagaagc agctgttaat gttgaatgcc aagatgaaat
     3541 tagcttaaaa atcaaagaag gagtgcaaaa tactttagat ttatttctta agaaacttga
     3601 aaaacatgga gtggctctta tcaaagatga aaaagagttt gatcctaatt tacacgaagc
     3661 aatgtttcat gtagatagtg aaaaccatca aagtggtgaa gtggttcaag tgcttcaaaa
     3721 aggttataaa atagccgatc gcgtgatccg cccaaccaaa gttagtgtag caaaataaat
     3781 tttaataaaa ggataaaaaa tgagtaaagt tataggtata gatttaggaa caaccaattc
     3841 ttgtgttgct gtgtatgaac gcggcgagag caaagtaatc ccaaacaaag aaggaaaaaa
     3901 cacaactcct tcagtggtag cttttacaga taaaggcgag gttttagtag gcgatagtgc
     3961 aaaacgccaa gcggtaacta accctgaaaa aaccatttat tctatcaaaa gaattatggg
     4021 tttaatgatc aatgaagatg cggctaaaga agctaaaaat agacttcctt accacatcac
     4081 cgaaagaaat ggtgcgtgcg caatagaaat cgcaggtaaa atttacaccc cacaagaaat
     4141 ttcagcaaaa gttttgatga aattaaaaga agatgcagaa gcttttttgg gtgaaagtgt
     4201 tactgatgcg gtgattactg tgcctgctta ttttaacgat gcacaaagaa aagcgacaaa
     4261 agaagcggga acgatagcag gacttaatgt attaagaatt atcaatgagc ctacttcagc
     4321 agctctagct tacggacttg ataaaaaaga tagtgaaaaa attgtggttt atgatctagg
     4381 tgggggaact tttgacgtta ctgtgcttga aacgggcgat aatgtagtag aagttttagc
     4441 aacaggtggt aacgctttct taggtggtga tgattttgat aataaactta tagattttct
     4501 agctaatgaa tttaaagatg aaacaggcat agatcttaaa aatgatgtta tggctttgca
     4561 acgcttgaaa gaagcagcag aaaatgctaa aaaagaatta agttcagcta atgaaactga
     4621 aattaattta ccatttatca cagcagatgc aagtgggcca aaacatttgg ttaaaaaact
     4681 tactagagct aaatttgaag gtatgattga ttctttagta gctgaaacca tcactaaaat
     4741 caatgaagta gtaagcgatg cagggcttaa aaaagatgag atcaaagaaa tcgttatggt
     4801 agggggctct actcgtgttc ctttagtgca agaagaagtg aaaaaagcct ttaataaaga
     4861 tcttaataag tctgtaaatc ctgatgaagt tgtggctatc ggtgcggcga ttcaaggtgc
     4921 ggttataaaa ggtgatgtaa aagatgtgct tttacttgat gttactccgc tctctttggg
     4981 tatagaaact ctaggcgggg taatgactaa gattatcgaa aaaggtacaa ctattccaac
     5041 taaaaaagag caagttttct caaccgctga agataatcaa agcgctgtaa ctatcaatgt
     5101 tttacaaggg gaaagagaat ttagtcgtga taataaatct ttaggaaatt ttaatcttga
     5161 aggaattcca ccagcaccac gcggtatgcc acaaatcgaa gttacttttg atatcgatgc
     5221 aaatggtatt ttaactgtta gtgcaaaaga taaagcaaca ggtaaggctc aagagatcaa
     5281 aatcacaggt tcaagcggac ttagcgagga agagattaat aacatggtaa aagatgctga
     5341 acttcacaaa gaagaagaca aaaaacgcaa agaagctgta gatgctagaa atgcagctga
     5401 tagcttggcg catcaagtag aaaaatcttt aagtgagttg ggtgaaaaag ttgccgctgc
     5461 tgataaagaa aatattcaaa aagctcttga tgatttgcgt gagactttga aaaatcaaaa
     5521 tgcaagcaaa gaagagattg aaagcaaaat gaaagcttta agcgaagttt ctcataagtt
     5581 agccgaaaat atgtataaaa aagatgagcc aaacacagca aatgataaaa agaaaaaaga
     5641 tgacgatgta atcgacgctg aagttgagta atcttaaaat ctctattcaa gcctttttaa
     5701 aaggcttgaa aattttttaa aattttaaag aaatgacaaa atctgtaaaa cataattctt
     5761 ttattagctt gctacctaat ttttcattga ttttttaacc aattcttttt gaagttctaa
     5821 ttcaaatcag acaattc
//
LOCUS       DAPIWQ010000102         5830 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.103, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000102 DAPIWQ010000000
VERSION     DAPIWQ010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5830)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5830)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5830
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.103"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..1505
                     /locus_tag="RJ267_001344"
     CDS             <1..1505
                     /locus_tag="RJ267_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HDV7389192.1"
                     /translation="KELNINLQRGSYAPKEEAIGILLPASFASSLTNLSVLIAEKIAV
                     NLNFTAGEKALKAAIKNAQISQIYTSKTFLEKLANKGINLNFDTNIHLIYFEDIVEDF
                     KMQKTKIFSMMLAVSIIPSFILKSIFTPSKNNLAIAAILFSSGSEGSPKGVMLNNRNI
                     LSNIAQISDVLCTRNNDVILSSLPPFHAFGLTVTTFLPLLEGIKSITFSDPTDALGVA
                     KAVAKNNVTIMCGTSTFLGIYARNKKLDALMFESLRIVVSGAEKLKNEVRTTFEMKFK
                     KSIFEGYGATETTPVASVNLPNHFDVDYWLIHRANKEGSVGMPLPGTAVRIVDPNNYE
                     NLKTNEDGLILIGGHQVMVGYLNDKEKTDEVVKEIDGIRWYNTGDKGHLDEDGFLYIV
                     DRYSRFAKIGGEMISLGAIEEEIAKFIDTEVVKFCATSLEDEKKEEQIVLLIECNNEI
                     FEGVCEAIKNSNIPTLFKPRYYFQIEKIPLLGSGKVDLKKVKELAKNLAI"
     gene            complement(1513..2424)
                     /locus_tag="RJ267_001345"
     CDS             complement(1513..2424)
                     /locus_tag="RJ267_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDV7389193.1"
                     /translation="MFVFIPLFTIFILLAGGYFAKRIGVLKQKQARTFLDFAIIFALP
                     CLIFDKAYHLNFDFSLIIFIFIGLFSCILAAFFAILIGKVFHFSKVTLVSMFLLSCFG
                     NTIFVGMPIVAGIFNDPQFSAEVIFYDALATTLPISLFGPFILSLGNGEKVSLLANVK
                     KILSFPPFLALLFGFLCKLITLPEFIFSPIRLFGASATPVALFAIGLGLGFMAIKTSY
                     KPTIVVIFAKMILAPLFFVFCLKIFNLELKDSTIVAIIESAAPTMTLAGAMVMKAKLD
                     SNLAVSAVAFGVLFAFVSMPILIWTLL"
     gene            complement(2621..2706)
                     /locus_tag="RJ267_001346"
     tRNA            complement(2621..2706)
                     /locus_tag="RJ267_001346"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2670..2672),aa:Leu,seq:gag)
     gene            complement(2741..3079)
                     /locus_tag="RJ267_001347"
     CDS             complement(2741..3079)
                     /locus_tag="RJ267_001347"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HDV7389194.1"
                     /translation="MKKVLFLLLACTAVAFAAETNAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVLQ"
     gene            3312..4646
                     /locus_tag="RJ267_001348"
     CDS             3312..4646
                     /locus_tag="RJ267_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDV7389195.1"
                     /translation="MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYVGFTMVGAILIVSFYT
                     LVIGWIVKYVFLSITGNLPMDLEVSKAQFGFFISEDFLSQFICFTLVFLCVFYIVSKG
                     VKNGIEKLNVWMMPSLFILLILMLVYAISKDGFIMAVKFLFVPDFSKINTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPDKTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYN
                     PNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAVSMIEPFTFYLINTF
                     GMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSVSSKVIMPLGGIL
                     AAIFVGFVMKKEALKILFKPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK"
     gene            4659..>5830
                     /locus_tag="RJ267_001349"
     CDS             4659..>5830
                     /locus_tag="RJ267_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDV7389196.1"
                     /translation="MRTYFSKIGFVLTVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLTIGFSIFLAEVAMGRLSKSDLANAYSNLAIKYGNRWRYGGVFMLGGIFVLSFYL
                     VIMGWVLKYTVVSLYYLPKTLDEAASNFQNLITTNLTSSVFFFTLSFFLTLLIVSKGL
                     IKGIEKLNVVIMPSLFLMLVFMLFYCMGFKQGFANAFSYLFYPDFLHFKFSSIAEALG
                     LAFFTLCLGIGCIVTYSSALDKKTNFIKSSVYIVLINLLISFIMGLIVFTFIFEFGAD
                     PHTQGVGIVFISLMSLFNQLGALGYIFAFCFFLALFFAGITSAVSMIEPLTFYMINNY
                     QISRVKALFLIGLFVFVFGICCILSLNLNFFSMFSFFGKDFFTLLDKLTSNFLLPLG"
BASE COUNT         1903 a          780 c          988 g         2159 t
ORIGIN      
        1 ccaaagagtt aaacattaac cttcagcgtg gaagttacgc tcctaaagag gaagctatag
       61 gaattttact acctgcttct tttgcaagtt ctttaaccaa tctatctgtt ttaatcgcag
      121 aaaaaattgc agtaaatctt aatttcactg ctggagaaaa agctctaaaa gcagctataa
      181 aaaatgcgca aatttcacaa atttatactt ctaaaacttt tttagaaaaa ttagcaaata
      241 aaggtataaa cctaaatttc gatacaaata tacatttaat ttattttgaa gatattgtag
      301 aagattttaa aatgcaaaaa actaaaattt ttagcatgat gctagcagtt agtattatac
      361 ctagttttat actcaaaagc atcttcactc cttcaaaaaa caatcttgcc atcgcagcta
      421 ttttatttag tagtggaagt gaaggttctc caaaaggtgt tatgctcaat aaccgtaata
      481 ttttaagcaa tatagcacaa atttctgatg tgctttgcac aagaaataat gatgtcattc
      541 tctcatcttt accacctttt catgcttttg gacttaccgt aactacattt ttgcctttgc
      601 ttgaaggtat taaaagcatc actttttcag atccaaccga tgccttaggg gttgccaaag
      661 ctgttgctaa aaataatgtc actattatgt gtggaacttc aaccttttta ggaatttatg
      721 caagaaataa aaagcttgat gctttaatgt ttgaaagttt aagaatagtt gtatcgggcg
      781 ctgaaaaact aaaaaatgaa gtaagaacta cttttgaaat gaagtttaaa aaaagcattt
      841 ttgaaggtta cggggctacg gaaaccacgc ctgtggcgag tgtaaattta ccaaatcatt
      901 ttgatgtgga ttattggctt atacatcgtg ctaataaaga aggaagcgta ggaatgcctc
      961 tacctggaac tgcggtacgt attgttgatc caaataatta tgaaaattta aaaacaaatg
     1021 aagatggact catacttata ggcggtcatc aagttatggt aggctatctt aatgacaaag
     1081 aaaaaaccga tgaagtggtt aaagaaattg atggcataag atggtacaac acgggagata
     1141 agggacattt ggatgaagat ggttttttat atattgtcga tcgttattct cgctttgcaa
     1201 aaattggcgg agagatgatt tctttgggtg caatagaaga agaaattgcc aaatttatag
     1261 acactgaagt ggttaaattt tgtgccacat ctttagaaga tgagaaaaaa gaggaacaaa
     1321 ttgttttact catagaatgc aataatgaaa tttttgaagg agtatgtgag gctataaaaa
     1381 attctaatat acctacactt tttaaaccta gatattattt tcaaatagaa aaaattcccc
     1441 tcctaggttc aggaaaagtt gatcttaaaa aagttaaaga attagctaaa aatttagcca
     1501 tataatttga gcttataaca aagtccaaat taaaattggc atagaaacaa aagcaaaaag
     1561 aactccaaag gctacagcac ttacggctaa attactatct agtttagctt tcattaccat
     1621 agctcctgct aaagtcatag taggagctgc actttctata atagcaacga tggtagaatc
     1681 ttttaattcc aaattaaata tttttaaaca aaatacaaaa aataaaggag ctaaaatcat
     1741 tttagcaaag atgacaacta ttgtaggttt gtaagaggtt ttaatcgcca taaagccaag
     1801 tcctaaacct atagcaaaaa gtgcaacagg ggttgcagag gcaccaaata aacgaatagg
     1861 agagaaaata aattcaggta aagtaatcaa tttacacaaa aaaccaaaaa gcaaagctaa
     1921 aaaaggtgga aaactaagaa tttttttaac attagcaagc aaactgactt tttctccatt
     1981 tcccaaagaa agtataaaag gtccaaaaag tgatataggt aaagttgtgg ctaaagcatc
     2041 gtaaaatata acttcagcgc taaattgtgg gtcattaaat ataccagcaa caataggcat
     2101 acccacaaat atagtatttc caaaacaaga aagcaaaaac atactgacta aagttacttt
     2161 agaaaaatga aaaacttttc caataagaat agcaaaaaaa gctgctagta tacagctaaa
     2221 caatccaata aaaataaaaa taatcaatga aaaatcaaaa tttaaatgat atgctttatc
     2281 gaaaatcaaa caaggtaaag caaaaataat agcaaaatct aaaaaagtcc tagcttgttt
     2341 ttgctttaaa acgccaattc ttttggcaaa atatccgcct gcaagtaaaa taaaaattgt
     2401 aaataatggt ataaaaacaa acattgaata atccttttta agggatggtt tttgaaaacg
     2461 gatagaatta tattctttat acttaaaaaa aatcttaata ttttttaagt tttttaaaaa
     2521 aaccaatatt ttttattttt tgtaacttta agaaattgta agttgaaatt tgattttgaa
     2581 tagttagtat tttaagttga atgattataa ttttaaataa tggtgcggtt agcgagattt
     2641 gaactcgcac acgcggagcg caccaccccc tcaagatggc gtgtctacca attccaccat
     2701 aaccgcatag aaaaaagccc aaaaagggct ttgataagtt ttattgtaaa actataaaag
     2761 gatttgcgta aagtgctatt agcgcgataa caagagcata gataacttgt gcttcaatca
     2821 tcgctaaagc gataaacata gttgtcatta attttggccc aagaccaggg tttctagctg
     2881 ttcctgcaat tgttgccgct gcagtattac ccataccgat agcaccacca agtgctgcaa
     2941 caccaagacc taagcctgct gcaagaactg aaaatgcttt aatccataca ttaatagctt
     3001 cttgctctac tggagcatta gtttcagctg caaaagctac tgctgtacat gctaataata
     3061 aaaaaagaac ttttttcatt atcttaacct ttctataaaa aaattttttt caatttttaa
     3121 atcagttcgg cttgcgtatc cctacttaag acttaaaaat aaattcgaat tataaccaaa
     3181 agtatcttta tttttattga aatttacaaa aattcacatt tttgatttaa atttgattgt
     3241 tttcaataaa gcttaaaagt ttttttgctt taataatatt ttaaaataat ttttaagtca
     3301 aggttgtaac attgagttct aaattttcaa aaataggttt cattttagcg gtagcaggtt
     3361 cagcggtggg cttgggtaat gcttggaaat ttccaacact agtaggtcaa agtggtggat
     3421 ctgcttttat cttgctttat ataattctta ctttaggtgt aggttttgtg atatttttag
     3481 ctgagcttag cataggaaaa attagtgaaa aagatccggt taatgcctat gaaaagttag
     3541 caccttcaaa taaaaaagct tggtcttatg ttggttttac tatggtgggg gcgattttaa
     3601 tagtttcttt ttataccttg gtgattggct ggatagttaa atatgtgttt ttaagtatca
     3661 ctggaaattt gcctatggat ctagaagtaa gtaaagcaca gtttggattt tttataagtg
     3721 aggatttttt aagtcagttt atttgtttta ctttggtttt tttatgtgtt ttttatattg
     3781 tttctaaagg tgttaagaat gggattgaaa agttaaatgt ttggatgatg ccttcattgt
     3841 ttattttgct tattttgatg cttgtttatg ctattagcaa agatggtttt ataatggcgg
     3901 ttaaatttct ttttgtacct gatttttcca aaatcaacac ttcaaatgtt cttgaagcct
     3961 taggacttgc tttttttagt ctttctttgg gcgttggaac gattattact tattctgcta
     4021 gtctgcctga taaaaccaat tttattacca gtactttaaa tattattttt atcaatcttt
     4081 tagttggttt attaatgggt ttggttgttt ttacttttat ctttgagttt ggttacaatc
     4141 ctaatcagca aggaccagga cttgttttta tttccttagc tactttattt gaaaaaattg
     4201 gagtgattgg ttgtattttt ggagcagcgt tttttatttc tttaatcttt gctggtatta
     4261 cttcagctgt ttcaatgata gagcctttca ctttttacct tattaatact tttggtatga
     4321 gccgtaaaaa agctttgatt ttaataggaa ttgttgttta tattttagga atgttgtgta
     4381 ttttatcttc tttaaaaagt actcagtttg gattttttgg aatgagtttt tttgatttgc
     4441 ttgatagtgt ttcaagcaag gttattatgc ctttaggtgg aattttggca gctatttttg
     4501 tgggatttgt gatgaaaaaa gaagctttaa aaattttatt taaaccttat atgaggggta
     4561 tattttttga actttggtat gtgtttttga gatttatttc ccctttggct gttgttatag
     4621 ttatgatagc cgctttttta aagtgagttt gaaaaataat gagaacatat ttttcaaaaa
     4681 tcggttttgt attgactgtt gctggtggag ccgttggttt aggtaatgct tggaaatttc
     4741 caactttaag cgcagaaaat ggtggttttg tttttgtgct tttatatttg ttttttactt
     4801 taactatagg atttagtatt tttttggctg aagtggctat gggacgttta agtaaaagtg
     4861 atcttgcaaa tgcttattca aatcttgcca taaaatatgg caatagatgg cgatatggcg
     4921 gcgtttttat gttaggtggt atttttgtcc tctcttttta tctagttatc atgggatggg
     4981 ttttaaaata tactgtagtg agtctttatt atcttcctaa aactttagat gaagcagcaa
     5041 gtaattttca gaatttaatt actacaaatt tgacaagttc tgtttttttc ttcactttat
     5101 ctttttttct tactttattg atagtatcta aaggtttaat caaagggatt gaaaaattaa
     5161 acgttgttat aatgcctagc ttatttttaa tgcttgtttt tatgttgttt tattgcatgg
     5221 gatttaagca aggttttgca aatgcttttt cttatttatt ttatcccgat tttttacatt
     5281 ttaaattcag ctctattgcc gaagctttag ggcttgcatt ttttacctta tgcttgggaa
     5341 taggttgtat agttacatat tcatcggcct tggataaaaa aacaaatttt ataaaaagtt
     5401 cagtgtatat tgttttgatt aatttattga tttcttttat catgggactt attgttttta
     5461 cttttatctt tgaatttgga gccgatccgc atactcaagg agtaggaatt gtttttatat
     5521 ccttgatgag tttgtttaat caacttggag ctttaggcta tatttttgca ttttgttttt
     5581 tcttagcact tttttttgct ggtattactt cagctgtttc aatgatagag cctttaactt
     5641 tttatatgat taataactat caaatttctc gtgttaaagc tctattttta ataggtttat
     5701 ttgtttttgt ttttggaatt tgttgtatct tgtcattaaa tttaaatttt ttttctatgt
     5761 ttagtttttt tggtaaagat ttttttactt tattagataa attaacttca aattttttac
     5821 ttccacttgg
//
LOCUS       DAPIWQ010000103         5827 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.104, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000103 DAPIWQ010000000
VERSION     DAPIWQ010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5827
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.104"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            90..992
                     /gene="mltG"
                     /locus_tag="RJ267_001350"
     CDS             90..992
                     /gene="mltG"
                     /locus_tag="RJ267_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HDV7389197.1"
                     /translation="MIFILGIFYYLTQPLKSNSVVFIPQGSISQIITYLKQNKYQMSN
                     IDKYILFFLGHPQSGWINIGTKDLNRAEFLHKLTIAKAALQTITLIPGETSVIFLEQA
                     AKQLGLDKDILLKEFQAQAPYDEGVFLPETYKIPKGITENLLIQMLLNHAEISNKKTS
                     EKIFGDYNPKKWHQYIIIASVIQKEAANDNEMPIVASVIYNRLKKGMKLQMDGTLNYG
                     IYSHVKVTPQRIRQDNSSYNTYKFTGLPKEAVCNVSLAAIRAAIFPLKTDYLYFVRDK
                     NTGVHIFSTNIDDHNKAINLQKGK"
     gene            1073..1504
                     /gene="flgB"
                     /locus_tag="RJ267_001351"
     CDS             1073..1504
                     /gene="flgB"
                     /locus_tag="RJ267_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HDV7389198.1"
                     /translation="MINPFKSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDNKELQLAVTEEEHQKPWKFPDPSKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            1514..2008
                     /gene="flgC"
                     /locus_tag="RJ267_001352"
     CDS             1514..2008
                     /gene="flgC"
                     /locus_tag="RJ267_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HDV7389199.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPAIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTISQSAID
                     LLRG"
     gene            2015..2311
                     /gene="fliE"
                     /locus_tag="RJ267_001353"
     CDS             2015..2311
                     /gene="fliE"
                     /locus_tag="RJ267_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HDV7389200.1"
                     /translation="MNNINDLRLNNNISNTNKSQNSTGIGDEFAKMLKNEINDLNKAQ
                     ESGEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            2318..4126
                     /locus_tag="RJ267_001354"
     CDS             2318..4126
                     /locus_tag="RJ267_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDV7389201.1"
                     /translation="MQEYKKNRVSKVAFAYCMALLFMIIFISSTFFLTSKRHIPNTEK
                     DQYALALRGSIITKDNFTITSSKQIYRAEIDLRSINKDKFDLFLKLFQIYSGISNDQV
                     ADIKKRMQNQKKRSYNFVLLQNLDSKQASYLKDLAKKLYIQGFFKAFTNNSGRVETRG
                     LNIIEHEEDRIYMSKDSFTPIIGYTKMILDPESGILKNIGVKGLEKYYDACLSPVQNE
                     KIQGLKDIGGNIILNLNSLQQKKINGCDLYLNLSLKLQKSIEKAIDQRNEDLKANEII
                     VGVMESKTGRILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKIKMDEVINTYGGSYKLGRFTIKDDHKMDKMTMEEVIRYSSNIGMIQIAKRLNNIEI
                     VSGLKIFKFGEKSGIDLPYEQKGEIPNPKRLRDIEKSVLSYGYGLKTTFIQLLAAYNV
                     FNNDGFYITPRLAEKFYQNGRFTNLDDDVKKEKILSSEAAKTMQNVLINVIEKGTGKK
                     AITQGIIAGGKTGTARIAERQGYTSNRYNASFFGFANDLNHAYTIGVLVRHPTKPYSY
                     YAAQSALPMFKDVVDILINEEFLTPIQDNNQTSTNN"
     gene            complement(4123..4824)
                     /locus_tag="RJ267_001355"
     CDS             complement(4123..4824)
                     /locus_tag="RJ267_001355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389202.1"
                     /translation="MISLVKFSDTAIEALRKESEHLYNNTYAVVAHAIGFSRKDIQSD
                     KSFKEILENKKWFSKNVDLDYLYQTRIKVLFEAIIDFSTKAQVYINDETKNHKIFTFK
                     MAAKNLAETTKNLKIIQANIKKYSSSSNEFLALEYNKIRSNLGELLRSIEELRVVEDR
                     EKLYLIIKNLQKGKEILKEIDTLTLSNVEHLISVRKITTAEGISILNDTTFAAKIAEE
                     LIGAVEVIFSKDISN"
     gene            complement(4978..5253)
                     /locus_tag="RJ267_001356"
     CDS             complement(4978..5253)
                     /locus_tag="RJ267_001356"
                     /inference="COORDINATES: protein motif:HMM:NF037997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HDV7389203.1"
                     /translation="MLTGVIQSSTVIMAIIVAALLAQQISLENSLAATLGTSVGGVVT
                     AVLASLSTNIEGKKLAFANCIFNFGIAFLIVLIFPYFIHFLIFYPLR"
     gene            complement(5265..5747)
                     /locus_tag="RJ267_001357"
     CDS             complement(5265..5747)
                     /locus_tag="RJ267_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HDV7389204.1"
                     /translation="MTNLGIGFKVFSGDLLEKILVKSTDTKIKSILFGTLSTLIMQFS
                     ILVSIVTISFLSAGLISLGAGIGIIFGVNLGNTASSWLIVGLTNIKILMLAIPLLIIG
                     VLFFFQKDSILKGLGNIFIGIGFFFLGVDYIKSGFENFKHIIDLSRFDFAGFKGVFVF
                     "
BASE COUNT         2303 a          906 c          829 g         1789 t
ORIGIN      
        1 catttttaag cactataaac aaagctaata taagcacaac aaaaaataca acaatatata
       61 aaattttctt tttcatacgc aacttctttt tgatatttat tttggggatt ttttattatc
      121 taactcagcc tttaaaaagc aattctgtgg tatttattcc ccaaggttca atttctcaaa
      181 ttataacata tttaaagcaa aataaatatc agatgagtaa tattgataaa tatattttat
      241 tttttttagg acaccctcaa tcaggctgga tcaacatagg tacaaaagat ttaaatagag
      301 ctgaatttct acataaactc actattgcta aagcagcact tcaaaccatt actcttatcc
      361 caggagaaac aagcgtaatc tttctagaac aagcagccaa acaacttgga cttgataaag
      421 atatactttt aaaagaattt caagctcaag ctccttatga tgaaggagtt tttttaccag
      481 aaacttataa aatcccgaaa ggcattacag aaaatctact cattcaaatg cttttaaacc
      541 atgctgaaat ttccaataaa aaaacttctg agaaaatttt tggtgattat aatccaaaaa
      601 aatggcacca atatatcatc atcgcttctg taatacaaaa agaagctgct aatgacaatg
      661 aaatgcctat agttgcaagc gtaatttaca atcgacttaa aaaaggtatg aaacttcaaa
      721 tggatggaac tttaaattat ggaatttatt cccatgtaaa agttacccca caaagaataa
      781 gacaagataa tagctcttat aatacctata aatttacagg attgcctaaa gaagcggttt
      841 gtaatgtttc tttagctgct attcgtgcag ctatttttcc tttaaagaca gattatttat
      901 attttgtgcg tgataaaaat actggagttc atatttttag cacaaatata gatgatcaca
      961 ataaagccat aaatttacaa aaaggaaaat aatttttgat atttttatac aaaatagtta
     1021 aattggaaca gtatttgctt attaatatta aaaattataa aaaggataaa aaatgattaa
     1081 cccatttaaa tcaaaagaac tggtcactgg tgctttagcg ggtagaaatc taagaaatca
     1141 actcatcaat gccaatcttg caaatgttga tactcctttt tataaagcaa gagatattga
     1201 atttgaaaca gctttggtaa atcgtgcaaa tgaaattttc aaaaaaaatg ataataaaga
     1261 attgcaatta gccgtaactg aagaagagca tcaaaaacct tggaaattcc ctgatcctag
     1321 taaatctact atttacttaa gagatggtca tttagcaaga aatgatgcaa atactgttga
     1381 tctagatgta gaaaccacag aaatgagtaa aaatacagtt atgataacag ctcttgatgg
     1441 agttttaaga agacaaagca atatctttag ttctatactt gatgcaagct ctaaattaag
     1501 ttaaaggtaa attatggcat acttaagtga ttttgatatt agtggttatg gtttaagtgc
     1561 tcagcgtttt agaatgaatg ttattagctc taatatagct aatgcaaaca ctacaagaac
     1621 agctgaaggt gggccttata gaagacgcga agtgatcttt aaagcaacag attttgataa
     1681 gcttttaaat gagcaaatta acaaagataa taatttttta aaatatgaaa atcctttaaa
     1741 tgatccaagt tcgccagaag aagctaaacc tgctattcaa agtgttgtag tggataaagt
     1801 ggtcagagat gacaaagatt ttcgtatgaa gtatgatcca agccatcctg atgcaaatgc
     1861 tgaaggttat gtagcgtatc caaatgtaaa ccctgttatt gaaatggcag atttgattga
     1921 agctacaaga gcttatcaag ccaatgtaag tgcttttaca agtgcaaaaa ctatatctca
     1981 aagtgcgatt gatttattaa gaggataata aaaaatgaac aatattaatg atttaagatt
     2041 aaataataat atttcaaata ccaacaaaag tcaaaattcc acaggaattg gtgatgaatt
     2101 tgccaagatg cttaaaaatg aaatcaatga tttaaataaa gcacaagaaa gtggagaagc
     2161 tgcaatgaca gacattgcca caggacaagt aaaagattta catcaagcag ctatagctat
     2221 cactaaagct gaaagcagca tgaaatttat gctagaagta agaaataaag caatcagtgc
     2281 ttataaagaa atcacaagaa ctcaaattta aaccctaatg caagaatata aaaaaaatag
     2341 ggtttcaaaa gttgcctttg cctactgcat ggcacttttg tttatgatta tttttatcag
     2401 ctctactttt tttcttacat caaaacgtca tatacctaac actgaaaaag atcaatacgc
     2461 tcttgctcta agaggatcga ttataaccaa agataatttt actatcacaa gttctaaaca
     2521 aatttatcgt gctgaaattg atcttagaag cattaacaaa gataaatttg atctattttt
     2581 aaagcttttt caaatttata gtgggataag taacgatcaa gtagcagata ttaaaaaaag
     2641 aatgcaaaat caaaaaaaac gctcttataa ttttgttctt ttacaaaact tagactccaa
     2701 gcaagcaagc taccttaaag atcttgctaa aaaactttat atacaaggtt ttttcaaagc
     2761 ttttacaaat aactcaggaa gagttgaaac aagaggatta aatatcatcg aacatgaaga
     2821 agatagaatt tacatgtcaa aagattcttt tactcctatt atcggttata ctaaaatgat
     2881 attagatcca gaaagtggaa ttttaaaaaa tataggagtt aaaggtttag aaaaatacta
     2941 cgatgcatgt ctaagccctg ttcaaaatga aaaaattcaa ggacttaaag atataggtgg
     3001 aaatattatt ttaaatctaa attcactaca acaaaaaaag atcaatggtt gtgatttata
     3061 tttaaatctt tctttaaaac tgcaaaaaag tatagagaaa gctatagatc aaagaaatga
     3121 ggatttaaaa gccaatgaaa tcatcgttgg ggtaatggaa agtaaaacag gaagaatttt
     3181 agctctagca agctcaaggc gttatgaccc acaaaatcgc ggaaaggatc tatcagttct
     3241 taatgcaagc gctatagaat acggctatga agcaggttct gttatcaaac cttttatctt
     3301 tacaacagcc ttaagacttg gtaaaataaa aatggatgaa gtgattaata cttatggcgg
     3361 ttcttacaag ctaggacgtt tcaccatcaa agacgatcac aaaatggaca aaatgactat
     3421 ggaggaagtt ataagatatt cttcaaatat aggcatgata caaattgcta aaaggcttaa
     3481 caatatagaa atcgtatcag gacttaaaat atttaaattt ggcgaaaaaa gtggtattga
     3541 tctaccctat gaacaaaaag gagaaattcc aaatcctaag cgcttaagag atatagaaaa
     3601 atctgtttta agttatggtt atggacttaa aacaaccttt atacaactcc ttgcagctta
     3661 taatgttttc aacaatgatg ggttttatat cacaccacgt ttagctgaaa aattctatca
     3721 aaatggacgc tttacaaatc ttgatgatga tgtaaaaaaa gaaaaaattc tttctagcga
     3781 agccgctaaa acgatgcaaa atgttcttat aaatgttata gaaaaaggaa caggaaaaaa
     3841 ggcaattaca caaggtatta ttgcaggagg taaaacagga acggcaagaa tagccgaaag
     3901 acaaggttac acctcaaatc gctacaatgc atcctttttt ggttttgcaa atgatttaaa
     3961 tcacgcctat accataggag ttctcgtaag acatcctact aaaccttata gttattatgc
     4021 tgcacaaagt gctttgccta tgtttaaaga tgttgttgat attttaatca atgaagaatt
     4081 tctaacgcct atacaagaca ataaccaaac tagcacaaac aactagtttg atatatcttt
     4141 agaaaatatc acctcaacag cacctataag ttcttcagca atcttagcag caaaagttgt
     4201 atcattaagt attgaaattc cttcagctgt tgtgattttt cttactgaaa taagatgttc
     4261 aacattgctc aaggttaaag tatcgatttc ttttaaaatt tcttttcctt tttgaagatt
     4321 tttaataatc aaataaagct tttcacgatc ttcaacaact ctaagctctt cgatacttct
     4381 taaaagctct cctaaattcg atctaatttt attgtactct aaagccaaaa attcattaga
     4441 agaactagaa tatttcttaa tatttgcttg gataattttt aaatttttag ttgtttcggc
     4501 taaattttta gctgccatct taaaggtaaa aattttatga ttctttgttt catcgttaat
     4561 ataaacttgt gctttagttg aaaaatcgat aatagcttca aaaagaacct ttatcctagt
     4621 ttgatacaaa tagtccaaat ccacattttt actaaaccac tttttatttt ctaaaatttc
     4681 tttaaaactt ttatcacttt gtatatcttt acgactaaaa cctatagcat gagcaacaac
     4741 tgcataggta ttgttataaa gatgctcgct ttctttcctt aaagcttcga tggctgtgtc
     4801 actaaattta accaaactaa tcaagatata aaggcttgtc tttattctta tctttaggag
     4861 cttttactat tttatttaaa aaaacaattt aaggagtaaa gaatgaaaaa aacgcaacac
     4921 caattaaatt aaacaaagtg tgaaataatg ccactttcaa agctatatct tctatgttta
     4981 acgcaatgga taaaaaatta agaaatgtat aaaataagga aaaataagca ctattaaaaa
     5041 agctatacca aaattaaaaa tacaatttgc aaacgctaat ttctttcctt caatattggt
     5101 acttaaagaa gctaaaacag ccgttacaac tcctccaaca ctagtaccca aagttgctgc
     5161 taaggaattt tccaaactga tttgttgtgc aagtaaagca gcgacaataa tagccattat
     5221 aactgtgctt gattgtataa ctcctgtaag caaagcacct aatcctaaaa aacaaaaact
     5281 cctttaaaac cagcaaaatc aaaacgagaa agatcaatta tatgtttaaa attttcaaaa
     5341 ccacttttaa tataatccac acccaaaaag aaaaaaccta taccaataaa aatattaccc
     5401 aaacctttta aaatactatc tttttgaaag aaaaataata ctccaataat caaaagcggg
     5461 atagccaaca ttaaaatttt aatatttgtt aaaccaacaa tcagccaaga acttgccgta
     5521 tttcctaaat ttactccaaa aataatccct atgcccgcac ccaaagaaat aagccctgca
     5581 ctcaaaaaag aaatcgtaac aatagaaact aaaattgaaa attgcataat taaagtactt
     5641 aaagtaccaa aaagtatact ttttatcttt gtatcagttg actttactaa aattttttca
     5701 agcaaatcac cactaaaaac tttaaaacct atacctaaat tagtcattcc aataagaagt
     5761 attgccactc ctgctaaaag attagcaagc tcgtcataac gaattaaaat aaaaatcaga
     5821 actaaag
//
LOCUS       DAPIWQ010000104         5771 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.105, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000104 DAPIWQ010000000
VERSION     DAPIWQ010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5771)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5771)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5771
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.105"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..425
                     /locus_tag="RJ267_001358"
     CDS             <1..425
                     /locus_tag="RJ267_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389205.1"
                     /translation="ISLSGVEKFDLEEFKRFLESTEAKEKGMGSEVKKALENLEVPKT
                     QVPSVEKIPTPSVPNLEVKQVEQLFKDPDEENKNDNGEINIDNLNTPKMTPDIEEKIK
                     RDLIANPPQIFKENNASKPYHLPQTGYDIKLDENSTQN"
     gene            complement(422..931)
                     /gene="lolA"
                     /locus_tag="RJ267_001359"
     CDS             complement(422..931)
                     /gene="lolA"
                     /locus_tag="RJ267_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HDV7389206.1"
                     /translation="MKKTFLIFFIFIGQLFALDLNFNTFSSNFTQIVKSKNSTLSYSG
                     HFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLEQVIFSHLDNIPNLNEIFKKASL
                     IDKDKLVAKYDNINYTIKLNQEQIQSISYKDEFENDVIINLNNQIKNPKINSDVFKAK
                     IPQNYDIVR"
     gene            1031..3619
                     /gene="secA"
                     /locus_tag="RJ267_001360"
     CDS             1031..3619
                     /gene="secA"
                     /locus_tag="RJ267_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HDV7389207.1"
                     /translation="MFLNALKAVFGTKNDREVKKYFKRVAQINALEGNYQNLSDDELK
                     AEFAKFKEQILSGEKNENDVLNDVFAIVRETGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVVLS
                     SQNSDIEHKQAYDCDITYGTNNEFGFDYLRDNMKFSKAEKVQREHNFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQKGEAVLPPAKPEGDFVVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYNKLAGMTGTAQTEA
                     TEFSQIYSLDVISIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANAKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKSIMDRLGIEEGESIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDENYDIRAKISQNIAEYSANVMNDYMLDESGSNVNFENLKAKILYECSTQ
                     ISEKDFENLSVIEMQDKLSQILENSYNEKMLRLEIKELRNIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVQFNQEEAQ
                     NLENKANEENEKLLQSSVEMGASEDNLGEAEFKKVPRNAPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            3616..4821
                     /locus_tag="RJ267_001361"
     CDS             3616..4821
                     /locus_tag="RJ267_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7389208.1"
                     /translation="MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITILPKFYAPVNDEFIDELRKTFPNLLFSPYLSTQVV
                     VKGDNRFEGGVLFGVNFNDEKKINEVVAKALKDENLSGFDILVGSALTDEFGLHKNDK
                     LSLIFSNLNPSGFSLVPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGIPKNPN
                     YDGIHVYSDNAFKDVEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRALFIVLMLIIL
                     VASLNIVSSLLMIVMNRRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAF
                     FALWLLGNFDIVTLPVDVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQI
                     NILDTLRNE"
     gene            4844..5629
                     /locus_tag="RJ267_001362"
     CDS             4844..5629
                     /locus_tag="RJ267_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7389209.1"
                     /translation="MSLFTQKNKNFKPLKPLSKSKIITNLILLILFLILFCYCSFSIS
                     AYHFDFSAIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTF
                     YIELVRGTPLLVQVLLIYYIIANNLGLDNRYVAGVIILSCFSAAYLAEIFRAGILSIS
                     ISQLESARALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQ
                     SAQEINSYTFATLEAYVILAITYLVLTLPISIFSRYLERKCQK"
     gene            5691..5766
                     /locus_tag="RJ267_001363"
     tRNA            5691..5766
                     /locus_tag="RJ267_001363"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5724..5726,aa:Lys,seq:ttt)
BASE COUNT         1999 a          707 c         1079 g         1986 t
ORIGIN      
        1 tcatatcttt aagtggagtg gaaaaatttg atttagagga gtttaaacgc tttttagaaa
       61 gtactgaggc taaagagaag ggtatgggta gcgaggtaaa aaaagcactt gaaaacttag
      121 aagttcctaa aactcaagtt cctagtgttg aaaagatccc aactcctagt gttccaaatt
      181 tagaagtcaa gcaagttgaa cagcttttca aagatccaga tgaagaaaat aaaaatgaca
      241 atggagaaat caatatagat aatttaaata cacctaaaat gactccagat atagaagaaa
      301 aaattaaaag agatttaatc gccaatcctc cacaaatatt caaagaaaat aacgcaagca
      361 agccttatca tttgccacaa acaggctatg atataaagct tgatgagaat tcaacgcaaa
      421 attagcgaac tatatcataa ttttgcggaa tttttgcctt aaaaacatcg gaattaattt
      481 ttggattttt aatttgattg tttagattga ttataacatc attttcaaat tcatctttat
      541 aggatatgct ttgaatttgc tcttgattga gtttaattgt ataatttata ttatcatatt
      601 ttgctacaag tttatctttg tctataagac ttgctttttt gaaaatttca ttaagatttg
      661 gaatgttatc aagatgagag aaaatgactt gttctagatc gtgctctact atggttactt
      721 gatttttgtt gatataaatc tcttttttac taggagtatc ataactccaa tatgcttgat
      781 ctttactcag tataaaatgc ccagaataag aaagtgtaga gtttttggat ttcactattt
      841 gggtaaaatt gcttgaaaag gtattaaaat taagatcaag ggcaaaaagt tgtcctataa
      901 aaataaaaaa tatcaagaat gtttttttca tttattttcc ttaaaaaaat atatttttta
      961 tgtcattcta gctaatttta attaaataat cgttataatg atagcttgaa aaatttataa
     1021 aggtttagaa atgtttttaa atgctttaaa agccgtgttt ggcacaaaaa atgatcgtga
     1081 agttaagaaa tatttcaagc gtgtagcaca aatcaatgct ttagaaggca actatcaaaa
     1141 tttaagcgat gatgaattaa aagctgaatt tgcaaaattt aaagagcaaa ttttaagcgg
     1201 agaaaaaaac gaaaatgatg ttttaaatga tgtttttgct atagtcagag agacaggtaa
     1261 gagaacttta aatatgcgtc attttgatgt gcagttaatc ggtggtatgg ttttgcacga
     1321 tggaaaaatc gcagaaatga aaacaggaga aggtaaaact cttgtagcga ccttacctgt
     1381 tgttttaaat gccatgagtg gcaaaggcgt acatgtcgtt acagtaaatg attatctagc
     1441 caaaagagat gctgagcaaa tgagtgcgat ttataatttt ttaggtttta gtgttggcgt
     1501 ggtgctttct tctcaaaata gtgatataga acacaagcaa gcttatgatt gtgatattac
     1561 ttatggaacc aataatgagt ttggttttga ttatttgcgt gataatatga aattttcaaa
     1621 agctgaaaaa gttcaaagag agcataattt tgttatcgta gatgaagtag atagtatttt
     1681 aattgatgag gcaagaactc cgcttatcat cagtggtcct acaaatcgta ctttagatgg
     1741 ttatattaaa gccaatgaag tagctaaaca aatgcaaaaa ggtgaagcag ttttaccccc
     1801 tgcaaaacct gagggtgatt ttgtagtaga tgagaaaaat cgtaatattt taattacaga
     1861 agcaggtatt gctaaggctg aaaaactttt tggcgtagaa aatttataca gtcttgataa
     1921 tgctatctta gctcatcagc ttgatcaagc cttaaaagca cataatcttt ttgaaaaaga
     1981 tgtgcattat gttttaagaa ataatgaagt tatcattgtt gatgaattta cagggcgttt
     2041 aagcgaagga cgtcgtttta gcgaaggatt gcatcaagct ttagaagcta aagaaaatgt
     2101 aaaaattcaa gaagaaagcc aaactctagc agatattact tttcaaaatt attttagaat
     2161 gtacaataaa cttgcaggta tgacaggaac tgcacaaaca gaagcgactg aattttctca
     2221 aatttatagt ttagatgtta tttctatacc gacaaatatt cctattaaaa gacaagataa
     2281 agatgatctt atctataaaa ctcaaaatga aaaattcaaa gctgtaattg aagagattaa
     2341 aaaagccaat gctaaaggtc agcctgtact tgtaggaacc gcaagtatag agcgcagtga
     2401 agtttttcac aatatgcttg taaaagagaa aatccctcat catgttttaa atgctaaaaa
     2461 tcacgagcaa gaagctttga ttatccaaga tgcaggtaaa aaaggtgctg taactatcgc
     2521 tacaaatatg gcaggtcgtg gtgtggatat aaaaatcgat gatgagatta gggctttggg
     2581 tgggctttat atcatcggta cagaaagaca tgaaagccgc cgtattgata atcaacttcg
     2641 tggtcgtgca ggaaggcagg gtgatcctgg aataagtcgt ttttatctaa gtttagaaga
     2701 taatctttta agaatttttg gtggggatcg tattaaaagt attatggatc gcttgggcat
     2761 agaagagggc gaaagcatag aatcaagaat cgttacaaga gcggttgaaa atgcgcaaaa
     2821 aaaagttgaa agcttgcatt ttgaaagcag aaagcatttg ttagaatacg atgatgtagc
     2881 aaatgaacaa agaaaaacta tttatcgtta tcgtaatgag cttttagatg aaaactatga
     2941 tattagagct aaaatttctc aaaatatcgc tgaatatagc gcaaatgtaa tgaatgatta
     3001 tatgcttgac gaaagcggtt ctaatgtaaa ttttgaaaat ttgaaagcaa aaattttgta
     3061 tgaatgttca actcagatta gtgaaaaaga ttttgagaat ttaagcgtca ttgaaatgca
     3121 agacaagcta agtcaaattc ttgaaaattc ttataatgaa aagatgttaa gacttgagat
     3181 taaagaattg cgtaatatag agcgtatttt atatttgcaa gttttggata atgcttggag
     3241 agagcatttg tatcaaatgg atattttaaa aacaggaata ggacttcgtg gatacaatca
     3301 aaaagatcct cttgtggaat ataagaaaga aagttataat cttttcttgg agttggtcaa
     3361 tcgtattaaa tttgatagta ttaaactact ttttagcgtg caatttaatc aagaagaggc
     3421 gcaaaattta gaaaataaag ccaatgaaga aaatgaaaag ctacttcaaa gctcagtaga
     3481 aatgggcgca agcgaagata atcttggcga agctgaattt aaaaaagttc cacgcaatgc
     3541 tccttgtcct tgcggaagtg gaaaaaaatt taaagaatgc catggaaaaa gtggtcctaa
     3601 gcaaggaatt ttagcttgaa taaaagcgtt ttaaaatatt tactttttaa gtatttaaga
     3661 tttgataaag agcaaccctt tatcaatctt tctatgcttt tggccttttt aggagtttgt
     3721 gtaggacttt gcgttttgct tgtagctatg gcaattatga atggttttga taaagaattt
     3781 gaaaaacgct tttttgtgat gaattatcct attactattt tgcctaaatt ctacgctcct
     3841 gtaaatgatg aatttataga tgagttaaga aaaacatttc caaatttgtt atttagccct
     3901 tatttaagca ctcaagttgt tgtaaaggga gataatcgtt ttgaaggtgg tgtgcttttt
     3961 ggcgttaatt ttaatgatga aaaaaaaata aacgaagtgg ttgctaaagc tttaaaggat
     4021 gagaatttaa gtggttttga tatacttgta ggatcagcac ttactgatga atttggtttg
     4081 cataaaaatg acaaactttc acttattttt tcaaatctta atcctagtgg attttcttta
     4141 gtaccgcaaa ctaaacgttt tgatgttaaa gcgcgtttta cttcagggct tgcattttat
     4201 gataaagctt atatgtacac agatgttgat gcattgaaaa aagtacttgg aatacctaaa
     4261 aatccaaatt atgatggaat tcatgtatat agcgataatg cttttaagga tgttgaaaaa
     4321 attaaatctt atttaaaaga tgattatgct gtggtgggtt ggtgggagca aaataaaaat
     4381 tttttttcag ccttagaact tgaaaaaaga gcgcttttta tagtgttgat gcttattatt
     4441 ttggttgcaa gtttaaatat agtaagttct ttattgatga tagtaatgaa tcgtcgcagt
     4501 gaaatagcac ttttacttgc tctaggtgca agcaaaaatg aggtaaaaaa gagttttttt
     4561 gccttaggta tgcttattgg tggtggtggt atgatagtgg gtgtggtact tgcatttttt
     4621 gctttatggc ttttgggaaa ttttgatatt gtaactttac ctgttgatgt ttatggaacc
     4681 agtaaattac cacttgattt gtctttaatg gatttttctt taaccattgt gggtgcttta
     4741 ataatcatag ctttatcatc tttttatcct gcaaaaaaag caactcaaat taatatttta
     4801 gatactttaa gaaatgaata aattgtaatt ttggagattt ttattgtctt tgtttactca
     4861 aaaaaataag aattttaaac ctttaaaacc tctatcaaag tcaaaaataa tcactaattt
     4921 aattcttttg attttatttt taatattgtt ttgttattgt agttttagta taagtgctta
     4981 tcattttgat tttagcgcaa ttgcaaccta taaagaaaaa tttcttcaag gttttttaaa
     5041 tactttaata atcagttttt tttctttatt gttgagtata attttgggtg gagttttttg
     5101 tgctttttct ttaagttcga ttgttttttt aagattttta tctacatttt acatagagct
     5161 tgtcagagga acccctttac tagtgcaggt attattgata tattatatca ttgcaaataa
     5221 tttaggactt gataatcgat atgtggctgg agttattatt ttatcatgtt tttctgctgc
     5281 ttacttagct gaaatattta gagctggaat tttaagtatt tctatatctc agcttgagag
     5341 cgctagggct ttagggttaa aagagatgca ggtttttgcg tatgtaattt ttccccaagc
     5401 tttaaaaaat attttagcac cgctgagtgg acaatttgca aatttaatta aagatagttc
     5461 cttattaagc gttattgctg taaatgaatt aacccaaagt gcgcaagaga taaattctta
     5521 tacttttgct actcttgaag cttatgtaat tttggctatt acatatcttg ttttgacttt
     5581 acctataagt atattttctc gttatttgga gagaaaatgc caaaaatgat ttaaaaaagc
     5641 ttgacaaata gagctaattt tggcataatc acatttttat ttcagaaaat gtctcgttag
     5701 ctcagccggt agagcatctc ccttttaagg agggggccgt tggttcgaat ccaacacggg
     5761 acaccattat a
//
LOCUS       DAPIWQ010000105         5638 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.106, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000105 DAPIWQ010000000
VERSION     DAPIWQ010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5638)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5638)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5638
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.106"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..1130
                     /locus_tag="RJ267_001364"
     CDS             <1..1130
                     /locus_tag="RJ267_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HDV7389210.1"
                     /translation="ILSFCTALHYYFLSQDFPIFTSSLIDSEGISSLGFIALALLVCI
                     LIFFFLKWQKNFNQKTSFMLFLLLILIESDKALANILLTLMRNSIIETHAFLVSFVGK
                     SNYFGVFGIYVYLIFITFLAFLSLKIRKKNISKKQILDINYRKNEAKTSLINRYFSSV
                     FISCVVSFCIVLYFFMVSSKPLTIDEPKEILPDKNGKFIFDIALLRDNKLHRFAYISA
                     EGKVIRFFLINKREDKDSPVAVFDACMICGDMGYIKKDGQLICISCNVRIFLPSVGKS
                     GGCNPIPLKYEYDGNKITIDVKDVIAGSNYFSQIKEIEVQDPVSKTKVINTQAPFSYS
                     YKGVTYYFSNQNNYEEFKKDPTKYVEENEAQFLIQRRNDVG"
     gene            1117..2409
                     /locus_tag="RJ267_001365"
     CDS             1117..2409
                     /locus_tag="RJ267_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7389211.1"
                     /translation="MMLAKMIFNSIFKNKIQKFLAFLTCFLATLLLSTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNIT
                     ALAPFLEGKITIENSQQKALIYGAYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKD
                     DSNEIMLGEDFAKNNKLKLGDTIKLIGENNQSKEAKIVGILLHANPKMSNKIIAPLNL
                     AQDLLNKQGLYSSTEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQ
                     ISDGLPGADAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRK
                     KEIGLLKVLGANTFQIYLIFASENLIVALFAALLGFIFGTALSQIISLSIFGYFIDIA
                     FVALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR"
     gene            2399..3517
                     /locus_tag="RJ267_001366"
     CDS             2399..3517
                     /locus_tag="RJ267_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDV7389212.1"
                     /translation="MVDKFFLNELFKSISFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDIKLSKELKAYGANVMISPKQDENFISNTEYEKIKENLKARALTPFLYDFLNLGSTS
                     GVVLGTDFRALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKAGNELQIYNP
                     NNGKSIKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKAKT
                     QAISNEFIDAKPISSVSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSSIDFR
                     FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE"
     gene            3514..4167
                     /locus_tag="RJ267_001367"
     CDS             3514..4167
                     /locus_tag="RJ267_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7389213.1"
                     /translation="MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSG
                     KSTLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNAL
                     ENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPEL
                     LLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK"
     gene            4164..4652
                     /locus_tag="RJ267_001368"
     CDS             4164..4652
                     /locus_tag="RJ267_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HDV7389214.1"
                     /translation="MKKSLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKA
                     VKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVL
                     AEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLIS
                     LL"
     gene            4613..5125
                     /gene="traF"
                     /locus_tag="RJ267_001369"
     CDS             4613..5125
                     /gene="traF"
                     /locus_tag="RJ267_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HDV7389215.1"
                     /translation="MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGF
                     EKSLKLNDKAQNFALVFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAND
                     AKAWADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSI
                     LEKEIKKVKS"
     gene            complement(5135..5572)
                     /locus_tag="RJ267_001370"
     CDS             complement(5135..5572)
                     /locus_tag="RJ267_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HDV7389216.1"
                     /translation="MKKTILTILFLLTLTQAKEIQIYESPTCGCCDLWADYMKAKGYE
                     VSVHKTNDFLKIKEKMGIKDEYQSCHTGVIEGYAIEGHVPESAIAWLLENKPKDVIGI
                     SAPGMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL"
BASE COUNT         1958 a          888 c          893 g         1899 t
ORIGIN      
        1 gaattttaag tttttgcacc gctttgcatt attatttttt aagtcaagat ttccctattt
       61 ttactagctc tttaatcgat agcgaaggta taagttcttt aggttttatt gctttagcct
      121 tgcttgtttg tattttgatt ttcttctttt taaaatggca aaaaaatttt aatcaaaaaa
      181 caagctttat gctgttttta ctgcttatcc ttatagaaag cgataaagct ctagccaata
      241 tcttgcttac tttaatgcga aattccatca tagaaactca tgcttttttg gtgagttttg
      301 taggaaaaag taattatttt ggtgtttttg gaatttatgt ttatttaatt ttcatcactt
      361 ttttagcatt cttaagctta aaaattcgca aaaaaaatat aagcaaaaaa caaattttag
      421 atataaatta tcgcaaaaac gaagctaaaa caagtcttat taatcgctat ttttccagtg
      481 tttttatctc ctgtgttgta agtttttgca ttgttttata cttttttatg gtaagctcta
      541 agcctttaac catagatgag cctaaagaaa ttttacccga taagaatggc aaatttatct
      601 ttgatatagc tcttttaagg gacaacaaac tccaccgctt tgcttatatc agtgctgaag
      661 gcaaagtgat aaggtttttt cttatcaaca aaagagaaga taaggattct cctgtagctg
      721 tttttgatgc ttgtatgatt tgtggagata tgggctatat caaaaaagat ggacaactca
      781 tttgcatttc ttgcaatgtg cgtattttct tgccaagtgt aggtaaaagc gggggttgca
      841 atcctatccc actcaaatac gaatacgatg gtaacaaaat caccatagat gttaaagatg
      901 taatagcagg atctaattat tttagtcaaa tcaaagaaat tgaagtgcaa gatcctgtat
      961 caaaaacaaa ggttataaac acccaagctc ctttttctta tagctataaa ggggttactt
     1021 attatttttc aaatcaaaac aactatgaag aatttaaaaa agatcctaca aaatatgtag
     1081 aagaaaacga agcccaattt ttaatccaaa ggagaaatga tgttggctaa aatgattttt
     1141 aactctatat ttaaaaacaa aattcaaaaa tttttagcct ttcttacttg ttttttagcc
     1201 acgcttttgc tctctactat gctaaatatt accctaagta taggtgatga agtaactaaa
     1261 caactcaaaa gctatggctc taatatcctt gttttaccca aaggctcaag ccttagtata
     1321 gaaataggta atgaacttta tgaaccctta aaaaacaaaa actacctaga agaaaaaaat
     1381 ttatatatga ttaaagacat ttattggcgt aacaacatca ccgcacttgc tccttttttg
     1441 gaaggtaaaa tcacaattga aaactcccag caaaaagcac ttatttatgg tgcttatttt
     1501 caaaaagcca taaaaattaa agatgatgat gattttatca caggtataaa aagtctttat
     1561 ccttatttag cagtgcaagg agaatgggca aaagatgata gcaatgaaat catgctaggc
     1621 gaagactttg ctaaaaacaa taaactaaaa ttaggagata ctatcaaact cataggagaa
     1681 aacaatcaaa gcaaagaagc aaaaatcgta ggcattttac ttcatgccaa tcctaaaatg
     1741 tcaaataaaa tcatcgctcc tttaaattta gctcaagatt tactcaacaa acaagggctt
     1801 tactcaagta cagaagtaag agcttttacc atacctgaat cagccctttc tgaaaaagta
     1861 cgtcgcatgg gcgaagaaaa attagatcag ttagaatatg acaaatggta ttgctcagct
     1921 tatgtaggct caatcgctag tcaaattagc gatggcttgc caggtgctga tgcaaaagct
     1981 ctaaatgcta taagcgatgc tcaaagcttg gtggttaaaa agatccaatc cttaatgggc
     2041 attacttgca ttatttgtct tattgttgca agtattgcga tttcaagtct aatgagttct
     2101 gaaattcatc gtagaaaaaa agaaatagga cttttaaaag tacttggtgc taatactttt
     2161 caaatttatc tcatctttgc tagtgaaaat ttaatcgtag ctttatttgc tgctttactt
     2221 ggatttattt ttggcacagc actttctcaa atcatcagtc ttagtatttt tggatatttt
     2281 attgatatag cctttgtagc tttaccttta agctttattt ttgcaggact tattgcctta
     2341 cttggttgct tacttcctat caaaaatatc acacaacttt cagctgcagg agtgctttat
     2401 ggtagataag tttttcctca atgagctttt taaaagcatt agcttttctt atcaaagact
     2461 ttttattata gttttaagtg tttttatagg agcacttact tgctcagctt ttttaaatat
     2521 ttattttgat atcgacatca aactttctaa agaattaaaa gcttatggag caaatgtaat
     2581 gataagtccc aagcaggatg aaaattttat ctccaatact gagtatgaaa aaataaaaga
     2641 aaatttaaag gctagagctt taactccttt tttgtatgat tttttaaatt taggcagtac
     2701 aagcggggtg gttttaggca ctgattttag ggctttaaaa atcactaaac cttttttaga
     2761 agttaaagaa ggaagctttt ctctaaatga ttttgatgaa aattcagcct ttttaggagt
     2821 taatttagcc aagcaactag gcctaaaagc aggcaatgaa cttcaaattt ataatccaaa
     2881 caacggaaaa agcataaaac ttaccataaa aggcatactt tcaagcaatg atgaatttga
     2941 tagcattgtt ttagcccctt taagcgtggt gcaaaattta agcgatagag ccggtattaa
     3001 ctatgctaat gctgtagttt atggaaattt tgatgaagtt aaagccaaaa cacaagcaat
     3061 cagcaatgaa ttcatcgatg caaaacctat atcttcagta tccttaagtg aaggtttagt
     3121 gcttggaaaa atcaaagctt taatgttttt aatcatactt gtggtattga tcatagttac
     3181 tactagcgtt aatacaactt taagttctat tatattttct cgcaaaaaag aaatcgcact
     3241 gcgtttagcc ttgggtgcga aaaaaagtga aatttttaaa ctttttgcta gtgaatgctt
     3301 tatagtaagt ttttttgcta gtttaatcgg agctttttgt gggatatttt tagccaatgt
     3361 ctttggttat ttaattttta attctagtat tgattttaga tttatagctg tttttatagc
     3421 cttaatcatt tctttgattt ttgccttttt ggctgcattt tttcctataa aaagagcatt
     3481 aaaaatcaat gtgtgtgaaa atttgaaagg tgaatgatga aaaaagaact tattaaaata
     3541 aacaatttaa ataaagaatt tggcaaagtt aaagccttaa acaatatcaa cttaagcgtc
     3601 tatgaaggag aatggcttgc catcatgggt ccatcaggaa gtggaaaatc aacactttta
     3661 aacatactat cgctcatgga tactccaagc tctggagagt atatcttgga taatgaaaac
     3721 ctagagcaaa tggatgaaga gcaaaaaatc accttgcgtc gtgaaaaaat agggcttgtc
     3781 tttcaacaat ttcatcttat cccctatctt aacgccttag aaaatgttat gctctctcag
     3841 tattatcact caagtgtaga tgaagaagat gccaaaatgg ttcttgaaaa agtaggactt
     3901 tcgcatagac tcactcattt acctagccaa ttaagtggcg gagaacaaca aagagtttgt
     3961 atagcaagag ctttaatcaa caacccagag cttttactcg cagatgaacc cacaggaaat
     4021 ttagatgaag ccaatgaaca aatcgttctt caaaccttgc aaaaattaaa aaatgaaggt
     4081 aaaaccatag ttttaatcac acacaatcct gatttagcca aattcgcaga tcgaaccctt
     4141 atcttacaac atggggtgtt aaaatgaaaa aaagcctttt aatcttaagc attttgtttt
     4201 tactcaatgc ttgttctttt gaaaattcaa aagatactgg aaaagttgga gaaaaaagcg
     4261 ctgaaatttc agctaaagat actttaggaa aagctgtaaa acttgctgat gataatacaa
     4321 gtttaaaagt cttagtcttt tttcaaaatg gctgcccttc ttgcttaaaa gaactccctt
     4381 ctttagatga attcatacaa aatcacccca ataaaatcag tgtttatgct ataaattcca
     4441 tcgataatgc caatgtggtt aaggttttag ccgaacaatt tgactttaaa aatgtaaaag
     4501 ttttaaaaga cgatcttaaa atcaccaatg atcgttacgc tgtgtttgca acccctacta
     4561 ccatcatcat taaagatggg atgataaaag atagaatttt aggagaaaaa ccatgggaat
     4621 ttttcgaatc caagcttatt tctttgcttt aatcatagct ttattttttg tagcttgtga
     4681 tagtggagaa aattttaaag ctttaaatag cgataaaacc tataattttg cctacaatgg
     4741 ttttgaaaaa agcctaaaac taaatgataa agcacaaaat tttgccttag tatttttcac
     4801 aaaagattgc ggagtttgca aagaacaaat tcctatttta cagaatttgg ctaaaaatta
     4861 tgattttaat atctttgtgg ttttaggcga tgcaaacgat gcaaacgatg caaacgatgc
     4921 aaaagcttgg gctgatgaaa aaggtttatc taatttagca atgttttatg aaaaaagagc
     4981 agctaaatac ctttcaagtg ccattgggga aatatatgga gtacctgtgc ttagtttttt
     5041 caaagaagga aaaatggatg aaaaattcat aggcttaact ccttatagca tacttgaaaa
     5101 agaaatcaaa aaagtaaaaa gctaaaaatt tactttaaag ctttttatcc cctataaaat
     5161 atccataaag ctcatagctt ccatcttttt tcatcaaaat tacaggatat ttttcactat
     5221 aaccttgttc cattcctgga cttccttgcg gcatgccagg agctgaaatt cctataacat
     5281 ctttaggttt gttttcaagc aaccatgcta tagcactttc aggaacatgc ccttcaatag
     5341 catagccttc aatcacacct gtatggcaac tttgatactc atcttttata cccatttttt
     5401 ctttgatttt aagaaaatca ttggttttat gaacactaac ctcataaccc ttagctttca
     5461 tataatcagc ccaaagatca caacagccac aagtaggact ttcataaatt tgtatttcct
     5521 tagcctgcgt aagagtgagt aaaaaaagaa tggttaaaat tgtttttttc ataattgcta
     5581 tcctaagtaa aaaatatata ataatacttt tataaagtta atatcatcac atttttaa
//
LOCUS       DAPIWQ010000106         5591 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.107, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000106 DAPIWQ010000000
VERSION     DAPIWQ010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5591
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.107"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            104..1081
                     /locus_tag="RJ267_001371"
     CDS             104..1081
                     /locus_tag="RJ267_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HDV7389217.1"
                     /translation="MLKRLALLIALSSLMLHASDLVKIYLNQGLDAVGVAIEKELTQK
                     DFWLSEIGDKNISLGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMG
                     DKKIEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGSRLDEFKTRGCIALFNNNLEKFAKVVQDKKVFVMTEEKEKIRAKKDQIASLLADL
                     FTWKLAWTNSDTNAYLSFYDEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPNLENETMYRISFYEDYYTKNYRFRGDKILYVKIDSKGKMKILAEQ"
     gene            1082..2068
                     /locus_tag="RJ267_001372"
     CDS             1082..2068
                     /locus_tag="RJ267_001372"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HDV7389218.1"
                     /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLL
                     APLAKNLGVSFVAVKSEEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNY
                     KQDIKIHLKIDTGMHRNGICVENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQ
                     KENFQKAKKIVKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKRVLS
                     LYAHRLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFRYNGRGELVLGNGKA
                     MLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
     gene            2071..2538
                     /locus_tag="RJ267_001373"
     CDS             2071..2538
                     /locus_tag="RJ267_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HDV7389219.1"
                     /translation="MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPIVFDISQKAV
                     RRAGLDYWDKLEPIIWENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFG
                     SESYGLPMELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFRNFAS"
     gene            2642..4108
                     /locus_tag="RJ267_001374"
     CDS             2642..4108
                     /locus_tag="RJ267_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HDV7389220.1"
                     /translation="MNLDIMLDFANKASDIIANKIVPNTDIIMVVLLIVCGLYYSFLT
                     RFVQFRMLSSVFKILTEKNEGHAKEHISPFQALMISTASRVGIGNIAGISLALATGGA
                     GALFWMWVMAFFGGASAFAESTLAQVYKSKDDTGGFKGGPAYYIKKALGSHFFGAFFA
                     FILIITYAYGFNGLQSQTMTSSFKVYYDMFNPNAAVDFASSSWPMIIGIVLTIFGAWM
                     FFSHHTKIGKISSLIVPFMALAYVLLAVIAVLMNFDKIPSVIHMILQSAFDFKAIFGG
                     FAGSALVIGIKRGLFSNEAGMGSAPNAAAAALTSHPAKQGVIQAFSVLIDVVVCTSSG
                     FLVLFSMAYLGLGENKIDGGMPLVQEAMREYYGSFGIHFITIAIVLFAITSLIGNYYY
                     AQANVKYLTNSKFVMNLFRITAVAMIFIGSQMNLKLAWNLADLTMAFMATTNIISLLL
                     LGGIVNKVLKDFNTQQKSGIDPKFNASKLGIKNAECWD"
     gene            complement(4136..4864)
                     /locus_tag="RJ267_001375"
     CDS             complement(4136..4864)
                     /locus_tag="RJ267_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDV7389221.1"
                     /translation="MIEVKNLQKKYGELEVLKNINTTISKGDVIAIIGPSGGGKSTFL
                     RCINRLELADSGEILINKQNILDKEIDINKIRQKVSMVFQHFNLFANKNVMENLCLTP
                     IKTGILSQEEAIKKAKLLLAKVGLADKENIMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDVAKEGLTMLVVTHEMGFARNVANRIFFMDKGKIAVDA
                     SPKEVFENPSNERLREFLNKVLNH"
     gene            complement(4857..5585)
                     /locus_tag="RJ267_001376"
     CDS             complement(4857..5585)
                     /locus_tag="RJ267_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009650248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7389222.1"
                     /translation="MRIFVFFVIIILWGYFSFPIEILKIQDPSGVASYGYTENAKAYL
                     KSYLITLLLTACAVIIGVIIGFSLAILRFSKFKTLNFIIDEYIDIIRGTPVILQLMIF
                     AFVIFTFIDNLYAAILALGLNSSAYIAEIVRSGINSVDKGQMEAARAMGLDYKTSMKE
                     IILPQATKNILPALANEFISLFKETSVVGFISVIDITMQSQSLQAVLYNPKPIIFTGL
                     VYYVSVKIFSYFAKKLELRMNKND"
BASE COUNT         1902 a          720 c          940 g         2029 t
ORIGIN      
        1 aataaggctg cattgttaat ataattaata ttttttaaga aaaaaaatat tataatcaca
       61 aacatttttg acttaaaaaa tttgaaatac ctaaggaaaa acattgttaa aacgacttgc
      121 tttattaatt gcactttctt cattgatgtt gcatgcctca gatcttgtta aaatttatct
      181 taatcaagga ttagatgctg ttggtgtagc gattgaaaaa gaattaactc aaaaggattt
      241 ttggttaagt gaaataggag ataaaaatat ttcacttgga tactatgatg ataatgttgc
      301 tatcgtgctt acaaataaaa cagataaaat tctccgtgtt tattcttacg aggacggaaa
      361 aataagaaaa gattttgaac aaaaagaaat aataactgga ttaatgggtg ataaaaaaat
      421 agaaggagat ttgaaaactc cagtaggttt ttatgagtta ggccgtaagt ttaatccagg
      481 tgatccttat tatggtccct ttgcttttgc cacaacttat ccaaatttac ttgataaagt
      541 acaaggaaaa acaggtggtg gtatttggat ccatggctat cctttagatg gttctagact
      601 tgatgaattt aaaacaagag ggtgtattgc tttatttaat aataatttgg agaaatttgc
      661 aaaagttgtg caagataaaa aagtttttgt tatgacagaa gaaaaagaaa aaattagagc
      721 taaaaaggat caaatcgcta gtttattggc tgatcttttt acatggaaac tagcttggac
      781 aaatagtgac actaatgcct atttaagttt ttatgatgag caagaattta aacgttttga
      841 taaaatgaaa tttgaacagt ttgcttccat gaaaaaatct attttttctc gtaaagaaga
      901 taaaaagatt aaattttcag atattaatat cagcccttat ccgaatttag aaaatgaaac
      961 tatgtataga atttcatttt atgaggatta ttacactaaa aactatcggt ttagaggcga
     1021 taaaatttta tacgttaaga tagatagtaa aggtaaaatg aaaattttag cagagcaata
     1081 aatgtcttta ataaaaattg atcaaaaagc ttatgaatac aatttaagac atattgctaa
     1141 aaaaataggg agttttcaaa gattaatttg tgtttttaaa gataatgcat atggacatgg
     1201 agctaagctt ttagctccat tagccaaaaa tttaggagtt tcttttgttg ctgttaagag
     1261 tgaagaagaa gctcgagaaa tcgaagaatt ttttgagaat atattaatac tatcacatcg
     1321 tcctcatggt aatgaaaatt ctcgatttat ttatgcttta aatgacattt ctcaagtaaa
     1381 aaattacaag caagatataa aaatacatct aaaaatagat acaggcatgc atcgcaatgg
     1441 aatttgtgta gaaaatttag agcatgctat aaatcttatt caaggtagtg atttaaaact
     1501 tactggaatg tttacacatt ttgctagtgc agatgaaatg gatggaagtt tttttgttca
     1561 aaaagaaaat tttcaaaaag ctaaaaagat agtaaaaaaa tatttttcaa atttattatt
     1621 tcattcgtat aattctgcag cattatttag agggaaaatt cctgaagatg aatattgtag
     1681 agttgggctt gttcaatttg gatatgggga ttcaaattta aaaagagttt taagtttgta
     1741 tgctcataga ttaagtcaaa ggattttaca aaaaggacag agcataggat atggaggcat
     1801 ttttactgct gcaaaggata tggaagtagc aacttatgat ttgggttatg ctgatggtct
     1861 ttttcgctac aatggaaggg gggagttagt gcttggaaat ggaaaagcaa tgcttggaaa
     1921 gatgtcaatg gatagttttt cttgtgaaaa ttctggtgag gaaatttgcg tgtttaaaga
     1981 tgctgatatt tgggctgatt tttttcatac tattaactat gaaattttag taaaattaaa
     2041 tcctaatatt caaagagttc tagtataaat atgtttaata tagttttagt tcaccctaga
     2101 ataccgcaaa atacaggtag tataggtaga atgtgcttta atgctggttt taaacttcat
     2161 attgttaaac caattgtttt tgatatttca caaaaggctg ttagaagggc aggacttgat
     2221 tactgggata aattagagcc tattatttgg gagaatcttg aagaattttt gaatgaaaat
     2281 atgatttata aaaatcgctt ttttttcgca acaactaaga gtcaaaaagc ttattttgat
     2341 gcagaatttc aaaaaaatga tttcttattc tttggaagtg agagttatgg tttgcctatg
     2401 gaattaatgc aattaaattg ggaaaatgct ataactatac ctatgaaatc ttatggaaga
     2461 agtttaaatt tagccacaag cgttggtata atctcttatg aagctttaag acaaaatttt
     2521 agaaattttg cttcttaaaa gtttcaaatt tacacaatag cttaaaacaa ataaaatcat
     2581 aaagtccttt ttataaaaat tatgttaaag taaaatttag attatttttt gaggagttta
     2641 gatgaattta gatattatgc tagattttgc caataaagcg tctgatatta tagctaataa
     2701 gattgtccca aatacagaca ttattatggt agttttactt attgtttgtg ggctttatta
     2761 tagtttttta actcgctttg ttcagtttcg tatgttgagt tctgtattta aaattcttac
     2821 agaaaaaaac gaaggacacg ctaaagaaca tatttcacct tttcaagcat taatgatctc
     2881 aactgcttct agagttggta taggaaatat tgctggaatt tctttggcat tggctacagg
     2941 tggagctggt gctttatttt ggatgtgggt tatggcattt tttggtggtg cctcagcatt
     3001 tgctgaaagt accttagctc aagtttacaa atcaaaagat gatacaggcg ggtttaaagg
     3061 tggtccagct tattatataa aaaaagcctt aggctcacat ttttttggag ctttttttgc
     3121 ttttattctt attattactt atgcttatgg atttaatgga cttcaaagtc aaacaatgac
     3181 ttcgtctttt aaagtttatt atgatatgtt taatccaaat gctgctgtag attttgcatc
     3241 aagttcttgg ccaatgatta ttggtattgt tttaactatt tttggtgcat ggatgttttt
     3301 ttctcaccat actaaaatag gtaaaattag ttctttaatt gttcctttta tggctttagc
     3361 ttatgtttta cttgccgtga ttgctgtttt aatgaatttt gataaaattc cttctgtgat
     3421 tcatatgatt ttacaaagtg cttttgattt taaagcgatt tttggtggtt ttgctggttc
     3481 tgctttggtt atagggatta aaagaggact tttttcaaat gaagcgggta tgggctcggc
     3541 acctaatgca gctgcagcag ctttgacaag tcatccagct aaacaaggtg ttatacaagc
     3601 cttttcagtt ttaattgatg ttgttgtttg tacaagttct ggatttttag ttcttttttc
     3661 tatggcatat ttaggacttg gagaaaataa aattgatggt ggaatgcctt tagttcaaga
     3721 agctatgcgt gagtattacg gtagctttgg aatccatttt attactatag ctattgttct
     3781 ttttgcaata acttctttaa taggaaatta ttattatgct caagctaatg ttaaatattt
     3841 aacaaattcc aaatttgtaa tgaatttgtt tagaattaca gctgtggcta tgatttttat
     3901 aggctcgcaa atgaatttaa aacttgcttg gaatttggct gatttgacta tggctttcat
     3961 ggcaacgaca aatattatat ctttattgct tttaggtggt atagtaaata aagttttaaa
     4021 agattttaat acgcaacaaa aatctggtat agatcctaaa tttaatgcta gcaaacttgg
     4081 aattaaaaac gctgaatgtt gggattaaaa ttcataagcc ttagtggctt atgaattaat
     4141 gatttaaaac cttgtttaaa aattctctca atctttcatt gctaggattt tcaaatactt
     4201 ctttagggct tgcatcaaca gcaatttttc ctttatccat aaaaaatata cgattggcaa
     4261 catttctagc aaagcccatt tcatgagtta ctacaagcat agttaaacct tcttttgcaa
     4321 catctttcat aatgcttaga acctcgccta tcatttcagg atctagagct gaagtaggtt
     4381 catcaaataa aataacatca ggattcatca tcaagcttct agcaatagct atgcgttgtt
     4441 tttgtccacc agagagctta tggggcatta tattttcttt gtctgctaaa cccaccttag
     4501 caagaagtaa ttttgctttt tttatggctt cttcttgact taaaattcct gttttaattg
     4561 gtgttaaaca taaattttcc ataacatttt tattagcaaa aagattaaaa tgctgaaata
     4621 ccatgctaac tttttgcctg atcttattaa tatcaatttc tttatcaagt atgttttgct
     4681 tattgattaa aatttcccca ctatcagcta gttctaagcg attgatgcag cgtaaaaatg
     4741 tactttttcc gcctccactt ggacctatga tagctattac atcgcctttt gagattgtag
     4801 tgttaatatt ttttaaaact tctaattctc catatttttt ttgtaaattt ttaacttcaa
     4861 tcatttttat tcatcctaag ttcaagtttt tttgcaaaat aactaaaaat ttttacactt
     4921 acataataaa caagtccagt gaaaataata ggctttggat tgtaaagtac ggcttgcaag
     4981 ctttgacttt gcatggtaat atcaataaca ctaataaatc ctacaacaga agtttcctta
     5041 aataaagaaa taaattcatt agctaatgca ggtagaatgt ttttagtagc ctgaggaaga
     5101 ataatttctt tcattgaagt tttgtaatca agtcccattg ctcttgcagc ttccatttgt
     5161 cctttatcta cactattaat gccacttctt acaatttctg ctatataagc cgagctatta
     5221 agtcctagtg caagaatggc tgcataaagg ttgtctataa aagtaaaaat tacaaaagca
     5281 aaaatcatca attgtaaaat taccggtgtt cctcgtataa tgtctatata ttcatctata
     5341 ataaaattaa gtgttttaaa tttagagaag cgtaaaatag ctaagctaaa accaataatc
     5401 actccgataa taacagcaca agcagttaat aaaagcgtaa taagataact ttttaaataa
     5461 gcttttgcat tttctgtata gccatagctt gcaactccac taggatcttg aatttttaat
     5521 atttctatcg ggaaagaaaa atagccccat aaaataataa taacaaaaaa aacaaaaatt
     5581 cttatatttt t
//
LOCUS       DAPIWQ010000107         5552 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.108, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000107 DAPIWQ010000000
VERSION     DAPIWQ010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5552)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5552)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5552
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.108"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            214..330
                     /gene="rrf"
                     /locus_tag="RJ267_001377"
     rRNA            214..330
                     /gene="rrf"
                     /locus_tag="RJ267_001377"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(526..1734)
                     /locus_tag="RJ267_001378"
     CDS             complement(526..1734)
                     /locus_tag="RJ267_001378"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HDV7389223.1"
                     /translation="MKISLFGYGKTTRAIAENLVDKFGPFDIYDDHFTETKKDTLGNL
                     LLNPNDFDDNLSDIEIPSPGFPPKHKLIQKAKNLQSEYDFFYDIMPKSVWISGTNGKT
                     TTTQMATHLLSHIGAVMGGNVGTPLAELNPYAKLWILETSSFTLHYTHKAKPEIYALL
                     PISPDHLSWHGSFDNYVQDKLSVLKRMNECDVVILPKIYANTPTKAHKISYEDEKDLA
                     VKFGIDTEKISFKSPFLLDAIMALAIEKILLDTLSYKLLNSFVMEKNKLEELKDSQNR
                     LWVNDTKATNESAVMAALSRYKDKKIHLIIGGDDKGVDLSNLFDFMKGFDIELYAIGI
                     STEKMLDYAKKANLKAYKCEVLSKAVNEISNHLRVNEVALLSPACASLDQFNSYAERG
                     KVFKECVNKI"
     gene            complement(1734..2795)
                     /locus_tag="RJ267_001379"
     CDS             complement(1734..2795)
                     /locus_tag="RJ267_001379"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HDV7389224.1"
                     /translation="MYYLSDLSHYAFFTYISVRAGFAFFIALCLSLFLMPKFITWAKA
                     KNASQPIYEYAPETHKTKCHTPTMGGLIFISSAVIASLFCIKFDNIFAISALLCLILF
                     CLIGLIDDLGKVLKKDNHSGLSPRMKLLAQIIAGLICILPLYFSSELSTELFIPFYKH
                     PLFDMEIFAIAFWILVLISSSNAVNLTDGLDGLATVPGIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALMGFLWYNCYPAQVFMGDSGSLALGGFIGFLAVI
                     SKNEILLLLIGFVFVLETVSVILQVGSFKIFNKRVFKMAPIHHHFEKVGWVENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            2875..4353
                     /locus_tag="RJ267_001380"
     CDS             2875..4353
                     /locus_tag="RJ267_001380"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HDV7389225.1"
                     /translation="MKQKCVLIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNSLL
                     KTSGLAVGLPEGQMGNSEVGHMCIGSGRIIYQNLVRINKAIENKELEKNENLKKLLAK
                     CKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDVSPKSGLNFIKD
                     LKEFCENLGVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKVPNLLEYLQKSYDE
                     NVTDEFIKAAQNENYKGMREEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFENL
                     LTMSVYDDKFKLPVLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKVKTYDEKPQMSAFEVCDAVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNATIKAVEAVDTCLGEILECAKKHDYAFIITSDHGNCEAMQDEKGNLLTNHTTFDV
                     FVFVQARGVSKIKDNMGLSNIAASVLKILDLEIPKEMNEALF"
     gene            4425..5168
                     /gene="fabG"
                     /locus_tag="RJ267_001381"
     CDS             4425..5168
                     /gene="fabG"
                     /locus_tag="RJ267_001381"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDV7389226.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLAGFGLKVWINYRSKPELAD
                     ALKDEIIASGGVAAVIKFDASKEDEFENGVKTIVESDGELSYLVNNAGVTNDKLALRM
                     KLEDFSGVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQVNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEVLSNEIKQTYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            5175..>5552
                     /locus_tag="RJ267_001382"
     CDS             5175..>5552
                     /locus_tag="RJ267_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HDV7389227.1"
                     /translation="MMDLKEIAQFLDDNAPAFLATLGTCGNPRVRPIQSPLLVGDKIY
                     FCTANTKGLFKHIKNYNDIEFCSCAKDGTFLRLRANAVFEPNLEVKKMMFKKYPYLVN
                     LYETPQNPKFEVFYLDHLSARMQF"
BASE COUNT         1994 a          757 c         1005 g         1796 t
ORIGIN      
        1 atatttagag tttaatagaa atctttcaag tagagtttgt attagaactt gctcttaaca
       61 ttgtttttta agtattctat ataaagactt atcaaagata agtaaagaag aaagaaaaat
      121 aaaagaagaa agagaataaa gaaaaaagta aagaaataaa agattaggct ttattcttaa
      181 attcagtctt tcaaagaata tttaaataac aatgtccgtg attatacaga tgtggaaacg
      241 ccttgctcca tcccgaacca agaagctaag cacatcgtgg gtgatgatac tacgccttac
      301 tggcaggggg aaagtagctc attgcggact tgttaaatgt cttcattact tactttatat
      361 ataaatccta tgtttatttt tattgttgtt ttagatgata cttagaatcg tgtttaaaaa
      421 agagtttgct gctggttagg gtttttagag agaatagggt gtttttaggg gtttgaaaat
      481 actagaagga taaaatttaa aattttctat gaaaagtaaa ataaattaaa ttttattcac
      541 acattcttta aagacttttc cacgctctgc gtaagagttg aactgatcta aacttgcaca
      601 agcgggactt aaaagagcta cttcattgac tcttaagtga tttgaaattt catttacagc
      661 tttagataaa acttcgcatt tataggcttt caaattcgct ttttttgcat aatcaagcat
      721 tttttcggta ctaataccta tagcatagag ttctatatca aatcctttca taaaatcaaa
      781 taaattgcta agatctacac ccttatcatc tccccctatg ataagatgga tttttttatc
      841 tttatagcga ctaagtgcag ccattacagc actttcattt gtagctttag tgtcatttac
      901 ccaaagccta ttttgactgt ctttaagctc ttcgagttta tttttttcca ttacaaagct
      961 atttaaaagc ttatagctta aagtatcaag taaaattttt tctatagcta aagccatgat
     1021 agcatcgagt aaaaaaggac ttttaaagga aattttttcc gtatcaatgc caaatttaac
     1081 agctagatct ttttcatctt catagcttat tttatgagct tttgttggag tatttgcata
     1141 aattttaggc agtattacta catcacattc attcattctt tttaaaacgc ttagcttatc
     1201 ttgaacataa ttatcaaaac ttccatgcca agaaagatga tcaggactta taggtaaaag
     1261 tgcataaatt tcaggtttag ctttatgagt gtagtgtagg gtaaaagatg aagtttcaag
     1321 tatccaaagt tttgcataag gattaagctc tgctaaagga gttccaacat ttccacccat
     1381 aacagcacca atgtgtgata ataaatgtgt agccatttgt gtggtggtgg ttttgccatt
     1441 ggttccgctt atccaaacgg attttggcat gatatcataa aaaaagtcat attcgctttg
     1501 taaatttttt gctttttgaa tgagtttgtg ctttggtgga aaacctggac taggaatttc
     1561 aatatcgctt aaattatcat caaaatcatt aggatttaaa agtaaatttc ctagtgtatc
     1621 tttttttgtt tctgtaaaat gatcatcata aatatcaaaa ggtccaaatt tatctactaa
     1681 attttcagca atagcacgtg tggtttttcc gtatccaaaa agtgaaattt tcattatctt
     1741 agctttattg atgcaagtgc aagcaaattt gaaagtaagg ctatcatcca aaaacgcact
     1801 ataattttat tttccaccca gccaactttt tcaaaatgat gatgaatagg cgccatttta
     1861 aatactcttt tattaaaaat tttaaaactt ccaacttgta aaattacaga aacagtttca
     1921 agaacaaaaa caaaacctat gagtaaaagt aaaatttcat ttttgctaat aacggctaaa
     1981 aatcctataa agccacctaa agctaaactt ccactatctc ccataaaaac ttgtgcagga
     2041 taacagttgt accataaaaa tcccattaaa gcaccaatta gcgctgcaca aataatcact
     2101 acttcaccaa gtccttgaat ttttggcaaa agtagatatt cactataatt taaatttcca
     2161 ctcaaatata agaatatccc taaagtagat aaagaaaaaa tgcctggaac tgtagctaag
     2221 ccatcaagtc catcggttaa atttacagca ttagagctag aaattaaaac caaaatccaa
     2281 aaagcaatgg caaaaatttc catatcaaaa agagggtgtt tataaaaagg tataaaaagt
     2341 tccgtgctaa gctctgaact aaaatataaa ggtaagatgc agataagtcc agcgatgatt
     2401 tgtgctaaaa gcttcattct tggactaagt cctgaatgat tatctttttt tagaactttg
     2461 cctaaatcat ctatgagtcc tatcaaacaa aaaagtatca aacaaagtaa agcacttata
     2521 gcaaaaatat tatcaaattt gatacaaaat aaacttgcga ttactgcaga actgatgaaa
     2581 ataagcccac ccatggttgg agtatggcat ttggttttat gagtttctgg ggcgtattcg
     2641 taaataggtt gactagcatt tttagctttt gcccaagtaa taaatttagg cattaaaaat
     2701 aaagacaaac ataaagcgat aaaaaatgca aatcctgcac gcacactaat ataagtaaaa
     2761 aaagcataat gacttaaatc tgaaagataa tacaaaacct agccttcttt ttggttttta
     2821 aaagtttaat tttagtaaaa tctaaccaaa aaaattctta taaaagagag aaaaatgaag
     2881 caaaaatgcg ttttaattat tacagatgga atagggtata ataagaatag taagtttaat
     2941 gcttttgaag cagctaaaaa accaagttat gaaaagcttt ttaaggaagt cccaaattct
     3001 ttactaaaaa cgagtggttt agctgtaggt ttgccagaag ggcagatggg aaatagtgaa
     3061 gtagggcata tgtgtatagg aagtgggcgt attatttatc aaaatttagt gcgtattaat
     3121 aaagccattg aaaacaaaga acttgaaaaa aatgagaatt taaaaaaact tttagcaaaa
     3181 tgtaaaagag tgcatattat agggctttat agtgatggcg gggtacattc tatggatacg
     3241 cattttaaag ccatgcttga aatttgtgcg aaaaatggca atgaagtttt tgctcacgca
     3301 atcactgatg ggcgtgatgt aagtccaaaa agtggcttaa atttcataaa agatttaaaa
     3361 gaattttgtg aaaacttagg cgtgcatttt gctacgcttt gtgggcgttt ttatgctatg
     3421 gatagagata agcgttggga tagggtaaaa gagtattatg agtgcttgtt aggtaaggct
     3481 tataaagtgc caaatttatt agaataccta caaaaatctt acgatgaaaa tgttactgat
     3541 gagtttatca aagcagctca aaatgagaat tacaagggca tgagagaaga agatggcatt
     3601 atctttatca actttagaaa tgatagaatg aaacaacttg ttgaagtgtt aaattctaag
     3661 gattttaaag agtttgaacg cgaaaaaatc tttgaaaatt tacttactat gagtgtttat
     3721 gatgataaat ttaaactccc tgtgcttttt gaaaaagaaa aaattgaaaa tactttagcg
     3781 caagtgattt ctaaagcagg gcttagtcag cttcataccg cagaaaccga aaaatacgcc
     3841 catgtaactt tcttttttaa tggcggaaaa gaagagcttt tagaaaatga aacaagggtt
     3901 ttaatcccaa gccccaaggt aaaaacttat gatgaaaaac cccaaatgag tgcttttgaa
     3961 gtgtgtgatg cagtgaaaaa aggcatagaa aagggtgagg attttatagt ggtaaatttt
     4021 gcaaatggag atatggttgg acatacaggt gattttaatg ctactataaa ggctgttgaa
     4081 gcggtggata cttgtttagg cgagatttta gaatgtgcaa aaaagcatga ttatgctttt
     4141 atcattacaa gtgatcatgg aaattgcgag gctatgcaag atgaaaaagg aaatttgctt
     4201 accaatcaca ccacttttga tgtttttgtt tttgtgcaag caaggggagt ttcaaagatt
     4261 aaagataata tggggctgag taatatagct gcaagcgtgc ttaaaatttt agacttagaa
     4321 attccaaaag aaatgaatga ggctttattt tagtttgttt gcctttttta taagaaattt
     4381 gttaagattg caatttttaa aattaaactt attaaggata gataatgaaa tttagtggaa
     4441 aaaatgtttt aattactgga gcaagtaagg gaataggtgc ttctatcgca aaaactttgg
     4501 caggttttgg gcttaaagtt tggatcaatt atcgttcaaa acctgaactt gcagatgctt
     4561 taaaagatga aattattgca agtggtggtg ttgctgctgt gattaaattt gatgcaagca
     4621 aagaagatga gtttgaaaac ggcgtaaaaa ctatagttga gagtgatgga gagttaagtt
     4681 atcttgtaaa taacgcaggc gttacaaatg ataaacttgc tttaagaatg aaattagagg
     4741 actttagtgg cgttgtggat acgaatttaa gctcagcttt tttaggttgt agagaagctt
     4801 taaaaaccat gagtaaaaaa cgctttggtg ctgttgtaaa tatcgcttct attgtcggag
     4861 aaatgggcaa tgctgggcaa gtaaattatt ctgctagtaa gggtggaatg atagctatga
     4921 ctaaatcttt tgctaaagaa ggagcaagta gaaatttacg ctttaattgc gtaactccag
     4981 gttttataaa aagcgatatg actgaagttt taagcaatga aatcaaacaa acctatcaag
     5041 ataatatccc tttaaaacgc tttgcagagc ctgaagaagt agctaattgt gtagcgtttt
     5101 tacttagtga ttatgcctct tatgtgacag gcgatgtgct taagatcaat ggtggtttat
     5161 atatgtaagg aaaaatgatg gatttaaaag aaatagcaca atttttagat gataatgcac
     5221 cagcattttt agccacttta ggaacttgtg gaaatcctag agtgcgtcct atacaaagtc
     5281 cattgcttgt gggagataaa atttattttt gcacagcaaa tacaaaagga ctttttaagc
     5341 atataaaaaa ttataatgat attgaatttt gttcttgtgc aaaagatggg acttttttaa
     5401 gacttagagc taatgcggtt tttgaaccaa atttagaagt taaaaaaatg atgtttaaaa
     5461 aatatcctta tcttgtaaat ctttatgaaa ctccgcaaaa tccaaaattt gaagtttttt
     5521 atcttgatca tttaagcgct agaatgcaat tt
//
LOCUS       DAPIWQ010000108         5457 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.109, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000108 DAPIWQ010000000
VERSION     DAPIWQ010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5457)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5457)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5457
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.109"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(4..765)
                     /locus_tag="RJ267_001383"
     CDS             complement(4..765)
                     /locus_tag="RJ267_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HDV7389228.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVKFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKHRYLENGEYEKLRDFLKFNEIRY"
     gene            complement(801..2795)
                     /locus_tag="RJ267_001384"
     CDS             complement(801..2795)
                     /locus_tag="RJ267_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HDV7389229.1"
                     /translation="MNMDENKEINKNEQNPNSNSKNNKRYKYKNRRKKLADSLQNEND
                     TPKIDQNSNKENSENSENKTEKKKKKNRNLPSKLTGNEDWQIALAECIEANRISHENR
                     LHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDII
                     IPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEH
                     GLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKID
                     QTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFARTKGR
                     VIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDAD
                     EVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASV
                     SAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKH
                     KETAMKCGIPERNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVID
                     RQKLADSGIVVIIAQIDKATKTLINKPRVFSYGLVADKHDHAFSKDMAEVLGQFFINV
                     KDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            complement(2764..3564)
                     /gene="rsmA"
                     /locus_tag="RJ267_001385"
     CDS             complement(2764..3564)
                     /gene="rsmA"
                     /locus_tag="RJ267_001385"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HDV7389230.1"
                     /translation="MVKAKKQYGQNFLIDKSVLAKIIQAIPKEMNNIIEIGPGLGDLT
                     QELLKISQVKAYEIDNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLV
                     ANLPYYVASHIILKALEDKNCLGLIVMAQREMAEKFCAKEGNSEFSSLGVLSAMICER
                     KILFDVDPQCFNPPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNL
                     KTYKAKVLEVLSTLGLKENIRPHEICVDLYLKIYDKLKDEYGRKQRDK"
     gene            3646..4182
                     /locus_tag="RJ267_001386"
     CDS             3646..4182
                     /locus_tag="RJ267_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HDV7389231.1"
                     /translation="MIICAGGNENFSFAKAIGIGLVESAFHLSQLCFKEKPSKLIFIG
                     TCGLYDKGEILEIYRSSHAFNVEFSKISHAFYTPAKYEICLEKENVSRETIKINSSNY
                     ICQNSKAAKEFSKLGFFAENMEAFSVLSVAKNLNIDAECILCATNFCNENAHEDFIKN
                     HQKAKENLEEYLKKYHYI"
     gene            4205..5275
                     /gene="rlmN"
                     /locus_tag="RJ267_001387"
     CDS             4205..5275
                     /gene="rlmN"
                     /locus_tag="RJ267_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HDV7389232.1"
                     /translation="MKELVNILDFLPEELGEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     SLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPMKEEKIDA
                     EGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQM
                     NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGI
                     NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTI
                     RESKGLDISAACGQLKERAKEQ"
     gene            5272..5370
                     /locus_tag="RJ267_001388"
     CDS             5272..5370
                     /locus_tag="RJ267_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389233.1"
                     /translation="MTMLDIFEIIFITTVVIIGFGGIVFVVTKEKK"
BASE COUNT         1698 a          885 c          893 g         1981 t
ORIGIN      
        1 tggtcaatat cttatttcat taaattttaa aaaatctctt aatttttcat attcgccatt
       61 ttctaaataa cgatgttttc ccgccttcaa cataccaaga tctaaagccc caaaagcaac
      121 acgcttaaga tccatgactt caagatcaaa atgtccaaaa aagcgtctaa gctctctatt
      181 tttaccttca tttataacca ctctaagctt agtatagcct ccacttgatc caaaaatttc
      241 aaagtctata aaaggagcaa aactcataga ggtaatttta gtttttgcat gtgcgccttt
      301 tttttcattt ttaatctcaa gtccattttg catggcttcg atgacttgtt tgctcaccgt
      361 gcctttaact ttaaggtagt attctctttc taaatcgcta tgcattaaag catcggcaat
      421 cacaggagaa tctgtaagca aaagtaagcc ttcacttgca taatccagcc tacctacgct
      481 aagccaagta ctaaattgtc ttggcaaggt atcatatata gtttttcttc cacgatcgtc
      541 ttttttactg acaatttcac ctttttgttt atggtagatt atcacgctaa attgcgttct
      601 tttttgtact cttttacctt taacaaaaac tttatcatca aatttaactt catcgcttaa
      661 aagggcaatt ttgttgttta tttttactaa gccttgtttg ataagttcat cggcttcacg
      721 gcgtgaatag cgggtgttat gggatataaa tttattaatt ctcatttgat cttccttaaa
      781 aagggcgttt ttgccctttt ttacattaca aaaatagttg gaactatggt tgggtatttt
      841 ttaatctttc taaagatgtg ttttcttaaa acttggcgga tttgattttc taaaaatctt
      901 ggatcattga gtacttcatc tttaacattg atgaaaaatt gtcctaaaac ttcagccata
      961 tctttgctaa aagcatgatc gtgtttgtca gctactagcc catagctaaa tactcttggt
     1021 ttgttgatca gtgtttttgt agctttgtca atttgtgcga taataactac tataccacta
     1081 tctgcaagtt tttggcgatc tataactaca tcatcggcga tttgtttgtt gatttgatta
     1141 tctacaaaaa ctttacctgt ttttacggtt tttatgcgtt tgacatattt ttggcaaagt
     1201 tctacttgat cgccatcact cataagataa atatttcttt cagggatacc gcacttcatc
     1261 gctgtttctt tgtgtttggt gatgtgattg tattctccat gaactggtag gaaaaattta
     1321 ggcttagtaa gggttagcat aagcttttgc tcttctatac tagcgtgtcc gcttacatga
     1381 atttcactaa attcttgata cgctacttta gctcctgctt ttaaaagata gtcaagcacc
     1441 gcagaaacac ttgcttcatt tcctggtatg gctttagctg aaataatcac ttgatctgta
     1501 ggtttgattt ttataaattt atgctcatca gttgccattc tataaagcgc actcatggtt
     1561 tcgccttgac ttcctgtagt tacgataagc acttcattgt ctttatattt gcttacttca
     1621 tcagcatcga tgaaaatttt tctatcaagt ttgatgtagc ctaattccat agtggtataa
     1681 agatttcttt ccatagaacg accgatcaca caaacttttc taccgtattt taaaccataa
     1741 gtgatagctt gataaacgcg gtggatatta gaactaaaag tactcatgat caccctgcct
     1801 ttggtacgtg caaagatttg atcaaaagtt ggccctacgg agctttcact ttttgtataa
     1861 ccttctttgt acgaatttgt actatcgctt aaaagacata aaaccccttc ttctccataa
     1921 tgtgccaaac gtcctaagtc tgttggatag ccatcgattg gagtttgatc aattttaaaa
     1981 tcacctgtgt ggataatcgt tcctgctttt gttttgatcg caagcgctga agcatcaatg
     2041 atagaatgcg tgatgtggat ccactctata tcaaattcgc ctatctcata aacacggcgt
     2101 ttttctacag ggcgaaacca tttgcgttct gcttttaagc catgttcttc aaatttgttt
     2161 gaaatcattc ctaaagccaa aggtgtagcg tagataggaa attggaattc tttaaagaaa
     2221 taaggcactg caccgatatg atcttcgtgt gcatgagtga tcactatacc acgaatttta
     2281 tctttaattt ttcttacata gtcaaaatca gggatgataa tatctacccc atgcatagtt
     2341 ccatcaggaa aactcatacc tatatctact ataattgcat ctttattggt ttcaaaaaca
     2401 ctgatatttc caccaatttc tcctaaacct cctaaaggag tgatgcggat tttatgctcg
     2461 ctagaattat tatattttaa agggtgtaag cggttttcat gtgaaatacg gttagcttct
     2521 atgcattctg caagagcgat ttgccaatct tcattacctg tgagttttga aggaagattg
     2581 cgatttttct tctttttttt ctcagtttta ttttctgagt tttcagaatt ttccttgttg
     2641 gaattttgat caatttttgg agtatcattt tcattttgca aagaatcagc taattttttt
     2701 ctacgatttt tatatttata gcgtttattg ttttttgaat ttgagttcgg attttgttcg
     2761 tttttattta tctctttgtt ttcgtccata ttcatccttt aatttgtcat aaattttaag
     2821 gtataaatca acgcaaattt catgtggtct gatgttttct tttaagccaa gagtgcttaa
     2881 aacttctaaa acttttgctt tatatgtttt taaatttcct aagagttgtt ttctaggagc
     2941 tttaaaacaa tcttttagaa aatttttgaa attttctatt tcgcaaagtt catcaaaatc
     3001 cttagtttta atcaaactca tcaccgctga cataactttt ggtggaggat taaaacattg
     3061 tggatcaaca tcaaaaagta tttttctttc gcaaatcatt gcacttaaaa cacctaagga
     3121 agaaaactca ctatttcctt ctttagcgca gaatttttca gccatttccc tttgtgccat
     3181 tacaataagc cctagacaat ttttatcttc taaagctttt aatataatgt gacttgcaac
     3241 ataataaggc aaatttgcaa ccaaaaaata tggtttttca tcaagactag gattaaaagc
     3301 ttcgcttgcg tcttgatgga tcaagttaaa ttttccacat tcaagttctt tttgaaattt
     3361 cttttttaaa ataggtatga gatcattatc gatttcataa gcttttactt gagaaatttt
     3421 taaaagttct tgcgttaaat cacctaagcc aggcccaatc tcaatgatat tgttcatctc
     3481 tttgggtatg gcttggatga tttttgctaa tacgctttta tcgattaaaa aattttgtcc
     3541 gtattgtttt tttgctttaa ccataagaaa taattttatc taaaaattct taattaagtc
     3601 tttttaggta gaattatttt ttgtaaaaat ttcataagga tcaaaatgat tatttgtgcg
     3661 ggtggaaatg aaaatttttc ttttgcaaaa gctataggca taggtttggt tgaatcagct
     3721 tttcatttga gtcaactttg cttcaaagaa aaaccatcaa aacttatatt tataggaact
     3781 tgtgggcttt atgataaggg agagatttta gaaatttata gaagttcgca cgcttttaat
     3841 gtagaatttt ctaaaatttc acatgcattt tatactcctg caaaatatga aatttgctta
     3901 gaaaaagaaa atgtttctcg tgaaacaata aaaatcaatt cttcaaatta tatttgtcaa
     3961 aattcaaaag cggcaaaaga attttcaaaa ttaggttttt ttgcagaaaa tatggaagcc
     4021 ttttctgttt tgagcgtagc taaaaattta aatattgatg cagagtgtat tttgtgtgca
     4081 acaaattttt gtaatgaaaa cgctcacgaa gattttataa aaaatcatca aaaggcaaaa
     4141 gaaaacttag aagaatactt aaaaaaatat cattatattt aaaaattcaa aaaggaaaat
     4201 aattttgaaa gagcttgtta atattttaga ttttttacct gaagaattag gagaaaaaat
     4261 caaaccgatg tttcgcgtga aacaaattta tcaatggatt tatcaaaaat atgccaataa
     4321 tttttccgat atgtcaagtt tgccaaaaga tttgcgttta gaacttgcgc aaaattttca
     4381 tttttctcct gtaaaatgcg ttaaaaatga gcaaagtaaa gatggaagta taaaatatct
     4441 ttttgaactt atcgatggtt taagggtaga aagtgtgctt ttgcctatga aagaagaaaa
     4501 aatagacgca gaaggcaaaa gaatttctca tgcgagatat actatctgtg tttcttctca
     4561 agtaggttgt aaaagtggat gtagtttttg tcttactgcc aagggtggtt tgaaaagaaa
     4621 tttaagtgca ggtgagatag tcggacaaat tttatggatc aaaaaacaaa acaatatccc
     4681 ttatgaacgc cgtgtaaata tagtatatat gggtatgggc gagcctttgg ataatcttaa
     4741 aaatgtttct aaagcggtaa aaattttagc gcaaaatgag ggacttgcta taagtcctcg
     4801 ccgtcaaacc atcagtacta gcggtttggc aaaacaaatc aaagaattag gtcaaatgaa
     4861 tttaggtgtt ttacttgcta tatcattgca tgcggttaat gatgagcttc gaaccgaact
     4921 tatgcctatc aataaagctt ataatatcgc tgcgattatg gatgcggtgc gtgaatttcc
     4981 tatagatcaa agaaaaagag tgatgtttga atatctttta attgatggta tcaatgataa
     5041 gcttgaacac gctaaagaat tagtcaagct tttaaatggc attaaagcca aagtgaattt
     5101 aatactcttt aatccacatg aaggaagttt atataaacgc cctagtttag aaaatgcgat
     5161 taaattccaa gatttactaa gtaataaagg tgtaacttgt actataagag aaagtaaagg
     5221 acttgatatc tcagctgctt gtggacagct taaagaaagg gcaaaagaac aatgacgatg
     5281 ttagatattt tcgaaatcat ttttataaca actgttgtaa ttataggttt tggtggaatt
     5341 gtttttgtag taacaaaaga aaaaaaataa ttattacatt taatggtgtc aagggggaga
     5401 cttgaactcc cgacctccgg cttatgagac cagcgctcta accagctgag ctaccct
//
LOCUS       DAPIWQ010000109         5399 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.110, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000109 DAPIWQ010000000
VERSION     DAPIWQ010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5399
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.110"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            76..711
                     /locus_tag="RJ267_001389"
     CDS             76..711
                     /locus_tag="RJ267_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDV7389234.1"
                     /translation="MKIAILCASGKVGKEISKEALKRNLEPVCFVRNSSKMNEFLPQA
                     KIVQRDLFELDSKDLIDFDIIIDAFGEWENLSLHKKHIECLSVILQGSKAKLFVVGGA
                     GSLYMDENHTTRLMDMPDFPKEYLDIAKASAEVLEFLRNEKGFKWVYVSPSAIFSPDL
                     PKSNHYKIIGEKFEVNANNESKISYSDYASAMIDIVLNSCYENTRIGVISL"
     gene            complement(723..1026)
                     /locus_tag="RJ267_001390"
                     /pseudo
     CDS             complement(723..1026)
                     /locus_tag="RJ267_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809523.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
     gene            1081..2583
                     /locus_tag="RJ267_001391"
     CDS             1081..2583
                     /locus_tag="RJ267_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HDV7389235.1"
                     /translation="MAKKKEIKLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISD
                     SFMQKYEELLKEQDDGADPEDADEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEA
                     MDEIEKHNDTLKGVLPKVYAKDNLDSKCLGELIDLIGNIAFDTGKSTDVLGHVFEYFL
                     GEFALAEGKQGGQFYTPKCVVELLVTMLEPYKGRVFDPCCGSGGMFVQSEEFVKSHQG
                     RLDDISIYGQESNQTTYKLAKMNLAIRKIESSQVIWNNEGSFLNDAHKDLKADFIIAN
                     PPFNDSDWSGELLENDGRWKYGVPPASNANYAWIQHFLYHLSPNGGVAGFVLAKGALT
                     SNTTNEAAIRKALIEDDLIDCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKTLFID
                     ARDLGTRINRRNKTLNKDDINQIANIYKAWKNGTDYEDIKGFCKSVSIDEIRELSYVL
                     TPGRYVGLADSDDEFDFDTRFNELLAKLKSQIKTEQELSEIILKNLEKIK"
     gene            2580..4046
                     /locus_tag="RJ267_001392"
     CDS             2580..4046
                     /locus_tag="RJ267_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDV7389236.1"
                     /translation="MIRTVMDFKFVLRLLEANQFENEVVEYKKNNKDFIVLGKNISAL
                     SNTAALLGIDKAYIIFGIEDGTLNIVGTNFKPKQEKKGNEELESWLHKVLKPNIEFKI
                     HEITEKEIRLVVFEIEATKISPIKFEEKAYIRIGSNRKELDKYPEKEKKLWQVLSGFS
                     FENEIAKSNLNIQDIYDLLDYSKCFDMLDISYDNYSSDEYIIEKLIEHGLVKNLNDSF
                     AITNLGAILFAKDLTKFKGLNRKRIRFIRYQGKNKIHTLEELEGRKGYAIGFQGLISY
                     IMQYVPKNEVIENAIRKDTTLYPEIAIRELVANAIIHQDFTINGRNPMIEMYSDRIEI
                     TNNGKSLIDIKRLIDMPSKSRNDKLANLMRIMGICEERGSGVDKVIDSVEAYQLPAPD
                     FINNEDYFQAILFSHMPLEDMTKQDRIRATYQHCCLKWASREAMTNASLRARFKIGDK
                     QHSKASKIISDTLEAGLIKQQDPENKSTKHVKYVPFFV"
     gene            4265..>5399
                     /locus_tag="RJ267_001393"
     CDS             4265..>5399
                     /locus_tag="RJ267_001393"
                     /inference="COORDINATES: protein motif:HMM:NF013579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDV7389237.1"
                     /translation="MNNWKKCKLGDIAEITMGQSPKSEFYNFDNIGMPFLQGNRTFGR
                     KYPYFDTYCTEYKKIAKKGEILFSVRAPVGDINFANNDICIGRGLCSMNAKNGENEFL
                     YYLLHNLRSVIINNESGSVFGSVNKNDLQTIEILLPLLEEQRQIATILSSIDDKIELL
                     HEQNKTLEELAQTLFLNWFKDREFNSTISDFISMQNGFAFKSKDFIDYGNNGVIKIKN
                     ISNGIVDIVNTDKISQNTINEVNNKFNINSGDILFAMTGAEIGKMGIVPSTNKKLWLN
                     QRVGMVKERFLGARFLAYIHLTSEFGYDYVINSATGSAQENISATDIENCPFVKLTSE
                     EIVSYSKQLNDFFEKIIFNLGEIQTLENMRDILIPKLLNGEIKI"
BASE COUNT         2042 a          695 c          974 g         1688 t
ORIGIN      
        1 tgatttttag tagtaaatat atttataatt tctagattgc attttttatg taaaaatact
       61 taaaaaggag atattatgaa aatagcaatt ttatgtgcaa gcggtaaagt aggcaaagaa
      121 atcagcaaag aagctttaaa aagaaattta gagccagtat gttttgtacg caatagctct
      181 aaaatgaatg aatttttacc tcaagctaaa atagtacaaa gagatctttt tgaacttgat
      241 tctaaagatc tgatagattt tgatattatt attgacgctt ttggagaatg ggaaaattta
      301 agcttacata aaaagcatat agaatgcttg agtgtaattt tacaaggaag taaggctaaa
      361 ttatttgttg tagggggtgc tggaagtttg tatatggatg agaatcatac tacaagactt
      421 atggatatgc ctgattttcc taaagagtat ttggatatag ctaaagcaag tgcggaagta
      481 ttggaatttt tacgcaatga aaaaggtttt aaatgggtat atgtgagccc atctgctatt
      541 ttttcaccag atcttccaaa aagcaatcat tataaaatca taggcgaaaa atttgaagtg
      601 aatgccaaca atgaaagtaa aatcagctat agtgattatg ctagtgctat gatagacata
      661 gtgcttaatt cttgctatga aaacacacgc attggggtaa taagcctata aataaagatg
      721 ccttatgctt ttaaggcatc ttttatttct tttaaatact tattttgaag ttttaaattt
      781 tcttctaaag aatttaaaat ctcttcgcta gttcttagga ttttttcttc ttttacattt
      841 ggatttttag cacttaaatc ataatttctt tcttcaagtt cttttttgct aagcagccaa
      901 gaattagcag tgatttttct tttctttgta gcattttaga aattccttaa aatgtgcgta
      961 ttctaaaggc ttgtttttag taagcttgta aggtggtata agctcgtagt aatacacctt
     1021 atcatcattt gcttttaaaa tactatttgt tatacttaat aaaattattt aaggataaaa
     1081 atggcaaaga aaaaagaaat aaaactagaa gatgcgttat ggaaaagtgc tgataaatta
     1141 cgcaaaaata tcgacgcagc agagtataaa cacatagttt taggacttat atttttacgc
     1201 tacattagcg atagctttat gcaaaaatac gaagagttat taaaagaaca agatgatgga
     1261 gccgacccag aagatgcaga tgaataccta gctgacaata tcttcttcgt tccagaaaaa
     1321 tctcgctaca actacataag agataacgcc aaaaatccca aaataggcaa aatgctagat
     1381 gaagcaatgg acgagataga aaaacacaac gatactctaa aaggagtttt gccaaaagtc
     1441 tatgccaaag ataacttaga tagtaaatgc ctaggcgaac ttatagatct tataggaaat
     1501 atcgcctttg acactggtaa aagcaccgat gttttaggtc atgtatttga gtatttttta
     1561 ggtgaatttg ccctagctga aggcaaacaa ggcggacaat tctacactcc aaaatgcgtc
     1621 gtagagctcc tagtaactat gcttgagcca tataaaggca gagtgtttga tccttgctgt
     1681 ggaagtggcg gtatgtttgt tcaaagcgaa gagtttgtaa aatctcacca aggcagacta
     1741 gatgacatct caatctatgg tcaagagtca aatcagacta cctacaaact cgccaaaatg
     1801 aacctagcca taagaaaaat cgaaagctca caagtgatat ggaacaacga aggctcattt
     1861 ttaaacgacg ctcataaaga cttaaaagcc gattttatta tagccaatcc accatttaac
     1921 gactcggact ggagcggcga actgttagaa aacgatggca gatggaaata cggcgtccca
     1981 ccagcaagca acgccaacta cgcttggata cagcactttt tatatcatct atcaccaaac
     2041 ggcggtgtag cgggatttgt cctagctaaa ggcgcactta caagcaacac cacaaatgaa
     2101 gcagccatta gaaaagcact tattgaagat gatttgatag attgtatagt aaatctaccc
     2161 gcaaagctgt ttttaaatac aggtattcct gcatcacttt ggtttataag acgccaaaag
     2221 ctaccaaaga cagtcaaaaa aacgcttttt atagatgcaa gagatttagg aactaggata
     2281 aatagacgca acaaaaccct aaacaaagac gatataaacc aaatcgcaaa tatttataaa
     2341 gcatggaaaa acggcactga ttatgaagac ataaaaggct tttgtaaaag tgttagcata
     2401 gatgagataa gagagctttc ttatgtgctt accccagggc gttatgtggg gcttgctgat
     2461 agtgatgatg agtttgattt tgatactaga tttaacgagc ttttagcaaa gttaaaatcc
     2521 caaatcaaaa ctgagcaaga gctaagtgaa attatcttaa aaaacttaga gaagattaaa
     2581 tgataaggac ggttatggat tttaaatttg tactaagatt gttagaagca aaccaatttg
     2641 agaatgaagt ggttgaatat aagaaaaata ataaagattt tattgtatta ggaaaaaata
     2701 tttctgcttt gtcaaataca gctgctttac tgggtataga taaagcatat ataatttttg
     2761 gcattgaaga tggtacgctt aatattgtcg gtacaaattt taaaccaaaa caagaaaaaa
     2821 agggaaatga agagcttgaa agttggttgc ataaagtttt aaaacctaat atagaattta
     2881 aaattcatga aataacggaa aaagaaatca ggttggtggt atttgaaatt gaggcaacta
     2941 agatttcacc aataaaattt gaagaaaaag cttatataag gataggcagt aatagaaaag
     3001 aattggataa atatccagaa aaagagaaaa aattatggca agttctttca ggcttttctt
     3061 ttgaaaatga aatagctaaa tcaaatttaa atattcaaga tatatatgat ttattggatt
     3121 acagtaagtg ttttgatatg ttagatatat cttacgataa ttattcttca gatgaatata
     3181 ttattgaaaa attaattgag catggtttag ttaaaaattt gaatgattct tttgctatta
     3241 ctaatttagg tgctatcttg tttgcaaaag atttaacaaa atttaaaggc ttaaatagaa
     3301 aaagaattag atttataagg tatcaaggta aaaacaaaat tcatacatta gaagaattag
     3361 aaggtagaaa aggatatgct attggttttc aaggattgat ttcatatata atgcagtatg
     3421 ttcctaaaaa tgaagtgata gagaatgcga taagaaaaga tactacttta tatccagaaa
     3481 tcgcaataag ggaacttgta gctaatgcga taattcatca agattttaca ataaatggta
     3541 gaaatccaat gattgaaatg tatagcgata gaatagaaat aacaaacaat ggaaaatctc
     3601 ttatagatat taaacgatta atagacatgc catcaaagtc acggaatgat aagttggcta
     3661 atttaatgag aataatgggt atatgtgaag aaaggggttc tggtgtggat aaggttatag
     3721 atagcgttga agcttatcaa ttgccagcac cagattttat aaataatgaa gattattttc
     3781 aggcaatttt attttctcat atgcccttag aagatatgac caaacaagat agaataagag
     3841 ctacatatca acattgttgt ttaaaatggg cttcaagaga agccatgaca aatgctagct
     3901 taagagctag atttaaaata ggtgataagc aacattcaaa agcttcaaaa ataattagcg
     3961 atactttaga ggcaggtttg attaagcagc aagatccaga aaataaatct acaaaacatg
     4021 ttaaatatgt tccatttttt gtttaggttt tatgtcatgc tttcgtcaaa attatttaaa
     4081 aatagcttaa attatatatc acatagcttt aaaatacgag cttttagcgt tttttcttct
     4141 gtcatgcttt cgtcattatc ttttaaacca agcttaaaca aaggaaattc cgaatttaaa
     4201 ttctcgaatt tatttcgtgt attttttgga ttttttacgc aaataaattc caagggatta
     4261 agatatgaat aattggaaaa aatgtaagct tggggatatt gcagagataa caatggggca
     4321 atctccaaaa tcagaatttt ataattttga taatataggt atgccatttt tacaaggcaa
     4381 taggactttt ggtaggaaat atccttattt tgatacatat tgcactgaat ataaaaaaat
     4441 agctaaaaag ggtgagattt tatttagtgt gagagctcct gtcggagata ttaatttcgc
     4501 aaacaatgat atttgtatcg gtaggggctt atgctccatg aatgcaaaaa atggtgaaaa
     4561 tgaattttta tattacttat tacacaactt aagaagtgtt attataaata atgagtctgg
     4621 tagtgttttt ggctcggtaa ataaaaatga tttacaaaca atagaaattt tattaccgct
     4681 attagaagag caaaggcaaa ttgctactat cttaagtagt attgatgaca agatagaact
     4741 actacacgag caaaacaaaa ccctagaaga actcgcccaa actctttttt taaattggtt
     4801 taaagataga gaatttaata gcactattag tgattttata tctatgcaaa atggttttgc
     4861 ttttaagagt aaagatttta tagattatgg taacaatgga gtaataaaga taaaaaatat
     4921 ttcaaatgga attgtagata ttgtaaatac tgataagata agccaaaata ctataaatga
     4981 agttaataac aaatttaata taaattctgg agatatttta tttgcaatga ctggtgctga
     5041 gataggtaaa atgggtatcg ttccaagtac aaataaaaaa ttatggttaa atcagcgagt
     5101 aggaatggta aaagaaaggt ttttaggagc taggttttta gcatatatac atttaacttc
     5161 tgaatttggt tatgactatg ttatcaattc agctactggc agtgctcaag aaaatataag
     5221 tgcgacagat attgaaaatt gtccatttgt taagcttacg agtgaagaga ttgtgagtta
     5281 ttctaaacaa ttaaatgatt tttttgaaaa aattatattt aatctaggag aaattcaaac
     5341 cctagaaaat atgcgtgata tacttatccc aaaactccta aatggagaaa taaaaataa
//
LOCUS       DAPIWQ010000110         5378 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.111, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000110 DAPIWQ010000000
VERSION     DAPIWQ010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5378)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5378)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5378
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.111"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            8..1129
                     /gene="dnaJ"
                     /locus_tag="RJ267_001394"
     CDS             8..1129
                     /gene="dnaJ"
                     /locus_tag="RJ267_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HDV7389238.1"
                     /translation="MEISYYEILEITQNADKETIKKAYRKMALKYHPDRNQGDKEAED
                     KFKLVNEAYEVLSNDEKRAIYDRYGKDALKGGGFGSSSSGFGGFEDLGDIFSSFFGEG
                     FGSSRRRKSSNDEKIPSDFIVNLKLSFKEAVFGCKKNIDFTYKCSCKTCNGTGAKDGK
                     LQTCPKCQGRGQVGVSQGFITFAQTCPDCQGSGEKASEKCSDCKGLGYNESKDSVELN
                     IPEGVDTGMKLRVNAKGNILKNGTRGDMYVKIIAAEDDTFIRDDDDIYIEFPVFFTQA
                     ILGESIKVPTIRGEATLNLPKGAKDGQRFVLEKEGVKDVHNSRMGNQIVQISIKFPTS
                     LNDEQKELLEKLSESFGIKDGMHQEQKGLFEKITNWFKS"
     gene            complement(1244..2521)
                     /gene="porA"
                     /locus_tag="RJ267_001395"
     CDS             complement(1244..2521)
                     /gene="porA"
                     /locus_tag="RJ267_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group 1 major outer membrane porin protein PorA"
                     /protein_id="HDV7389239.1"
                     /translation="MKLVKLSLVAALAAGAFSAANATPLEEAIKDVDVSGVLRYRYDT
                     GNFDKNFVNNSNLNNSKQNHKYRAQVNFSAAIADNFKAFIQFDYNAADGGYGANGIKN
                     DQKGLFVRQLYLTYTNEDVATSVIAGKQQLNTIWTDNGVDGLVGTGIKVVNNSIDGLT
                     LAAFAVDSFMAKEQGADLLGKSTISTTQETAPFQADSLGNLYGAAAVGSYDLAGGQFN
                     PQLWLAYWDQVAFFYAVDAAYSTTIFDGINWTLEGAYLGNSLDSELDDKRHANGNLFA
                     LKGSIEVNGWDASLGGLYYGDKEKASTVVIEDQGNLGSLLAGEEIFYTTGSRLNGDTG
                     RNIFGYVTGGYTFNETVRVGADFVYGGTKTEATNHHLGGGKKLEAVARVDYKYSPKLN
                     FSAFYSYVNLDQGVNTNESADHSTVRLQALYKF"
     gene            complement(2773..3228)
                     /locus_tag="RJ267_001396"
     CDS             complement(2773..3228)
                     /locus_tag="RJ267_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HDV7389240.1"
                     /translation="MKKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFINSAGTSG
                     EHDGEGMHYGTKNKLAQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTN
                     TQNKVLKITDFSPSLNYDEVPDPWYSGNFDETYKILSLACKNLLVFLSK"
     gene            3282..4466
                     /locus_tag="RJ267_001397"
     CDS             3282..4466
                     /locus_tag="RJ267_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7389241.1"
                     /translation="MENFNRTLLVCWFGVFTTSMGLSQIAPILPFYIKELGHVDTSEI
                     AFYSGLAFGITPLFMAVFSPLWAFLGAKYGYKNMLLRASFGMSVLTLWLSFAHSALEV
                     VFVRGLTGIISGFTSAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGFVAEF
                     FSISAVFDVVAFLIACSFVTIYFFIHGRKIQKEAKKNTQKVKENKTLIIVLFITTFVI
                     QFGTFGVMPILSIYVEQIHQGGNLALWAGIVVAASGISNLFFAPKLGKIADKIGPSKI
                     IFGALIFCGICFYLQAVASNVYTLIFVRLLIGVGLGGLLPCVNALLKKSVSAKNLSVI
                     FGFNQTCQFLGNFCGAFGGGLMASHFSVEFVFTFVCLIFIINAFIFLAFEKKYIFSNQ
                     GL"
     gene            4484..5146
                     /locus_tag="RJ267_001398"
     CDS             4484..5146
                     /locus_tag="RJ267_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HDV7389242.1"
                     /translation="MEMILFVLVMILLVLLFVVLFRQYKSPKIEEKSTQSFSDIMQLK
                     SIGELSVFQVFSKEIVTKKDSAFNGIWKNLLGWSLSERQIALIFEFEITFLYDLRDKN
                     FDILPLGDDAYKIIMPECRYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGISFSESDK
                     NKLIKEAKDEVKDLSLNLIQNLESKIHKSAKDTLEAIAKGFGAKRVEFEFKDNTQKLD
                     VS"
     gene            complement(5143..5352)
                     /locus_tag="RJ267_001399"
     CDS             complement(5143..5352)
                     /locus_tag="RJ267_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HDV7389243.1"
                     /translation="MPFVNIRITKENGEPTTEQKQELIAGVTDLLAKVLNKNKSSTVV
                     IIDEIDTDNYGLGGKSITQARKEKS"
BASE COUNT         1683 a          782 c         1027 g         1886 t
ORIGIN      
        1 gaataatgtg gaaataagtt attatgaaat tcttgaaatc acgcaaaatg ctgataaaga
       61 aaccataaaa aaagcctata gaaaaatggc tttaaaatat catcctgata gaaaccaagg
      121 tgataaagaa gcagaagata aattcaagct tgttaatgaa gcctatgaag ttttaagcaa
      181 tgatgaaaag cgagctattt atgatagata cggaaaagat gctttaaaag gcggtggatt
      241 tggttctagt agctcaggtt ttggtggttt tgaggattta ggagatatat tttctagttt
      301 ttttggagaa ggctttggct catcacgtcg tagaaaaagt tcaaatgatg agaaaatccc
      361 ttcagatttt atcgttaatt taaaattaag ttttaaagaa gcggtttttg gttgtaagaa
      421 aaatatagac tttacttata aatgctcttg taaaacttgt aatggaacag gggctaaaga
      481 tggaaaactt caaacttgtc caaaatgtca aggtagggga caagttggag tttctcaagg
      541 ttttatcact tttgcacaaa cttgtcctga ttgtcaagga agtggagaaa aagctagtga
      601 aaaatgtagt gattgtaaag gtttgggtta taatgaaagc aaagatagtg tcgagcttaa
      661 tatcccagaa ggtgtagata caggtatgaa gcttcgtgtc aatgctaaag gtaatatctt
      721 aaaaaatggt actagagggg atatgtatgt taagatcatc gccgctgaag atgatacttt
      781 tatcagagat gatgatgata tatatataga atttccagtg ttttttactc aagctatctt
      841 aggagagagt ataaaagtac ccaccatacg cggtgaagcg accttaaatt taccaaaggg
      901 tgctaaagat ggacaaagat ttgttcttga aaaagaaggg gtaaaagatg ttcataattc
      961 tcgcatggga aatcaaatcg ttcaaatttc tatcaaattc ccaacttctt taaacgatga
     1021 acaaaaagaa cttttagaaa aactaagtga aagttttggc atcaaagatg gtatgcatca
     1081 agagcaaaaa gggctttttg aaaaaatcac taattggttt aagtcttaat tttcctaaag
     1141 cgttttagct tgggaaaatt ttttatataa atttaagttt taaaaatcag gcataaaaaa
     1201 aggcggagca aaactccgcc ttgaagttag acttgaaagc ttcttagaat ttgtaaagag
     1261 cttgaagtct tacagtgcta tgatcagcac tttcattagt gtttacacct tgatctaggt
     1321 tcacataaga atagaatgct gagaagttaa gttttggaga gtatttgtaa tctactcttg
     1381 caacagcttc aagtttttta ccaccaccta aatgatgatt agtagcttct gtttttgttc
     1441 caccatatac gaagtcagca ccaacgcgaa ctgtttcgtt gaaagtatat ccaccagtta
     1501 cataaccgaa gatatttcta ccagtatcac catttagtct tgaaccagta gtatagaaaa
     1561 tttcctcacc tgcaagtaaa gaaccaagat taccttgatc ttcgattaca actgtagaag
     1621 ctttttcttt atcaccgtag tataaaccac caaggctagc atcccaacca tttacttcaa
     1681 tgctaccttt taaagcaaat aaattgccat tagcgtgtct tttatcatca agttcgctat
     1741 caaggctatt tcctaagtaa gcaccttcaa gtgtccagtt gattccatca aagatagttg
     1801 tactataagc tgcatctaca gcatagaaga atgctacttg atcccagtaa gctaaccata
     1861 attgtggatt aaattgtccg ccagcaagat cataagaacc tacagcagca gcaccgtaaa
     1921 gatttcctaa tgaatctgct tgaaaaggag ctgtttcctg tgttgtagat atagtacttt
     1981 ttcctaataa atctgcacct tgctctttcg ccataaagct atctacagca aaagcagcta
     2041 gagttaaacc atcgatgctg ttgtttacta ctttgatacc tgttcctact aaaccatcaa
     2101 ctccattgtc agtccagata gtgtttagtt gttgtttacc agcgattacg cttgtagcaa
     2161 catcttcatt tgtataagtt aagtataatt gacgaacaaa aagtcctttt tgatcatttt
     2221 ttattccatt agcaccataa ccaccatcag cagcattata gtcaaattga ataaaagctt
     2281 tgaagttatc agctatagca gcactgaagt taacttgtgc tctatatttg tgattttgtt
     2341 tgctgttgtt taaatttgag ttgttaacga aatttttatc aaaattacct gtatcgtatc
     2401 tgtatcttaa tacacctgat acatcaacat ctttgatcgc ttcttcaagt ggagtagcgt
     2461 tagctgctga aaaagcacct gcagcaagag ctgcaactaa actaagttta actagtttca
     2521 tgagaattct ccttgtcaaa aattaataaa acatcgtaat tgtagcacat aaatttggag
     2581 ttttttctta agaagcactt aaaatagtaa aaattttaaa tccgaaggat aaaaacatct
     2641 aaagaaaagc ctagctaaag ggatttaagc taggcgtgta attttaagga gtttttctta
     2701 tgaatgtttt tcggttcgtt tagaagtata agcctaaaaa gtaaacgaga agtaatatat
     2761 agttgtttta aattattttg ataaaaaaac aagtaaattt ttacaagcta gggataaaat
     2821 tttataagtt tcatcaaaat tcccactata ccaaggatca ggaacttcat cgtagtttag
     2881 actaggacta aaatcagtga tttttaaaac tttgttttgg gtgttggtga agttttttaa
     2941 aacatttttg aagttagaat tgtccatggt gattaaaaaa tcgctttcat cgcaaagctt
     3001 ttgagtgagt tttttgcttg tgaagttttt gtgttctatg ttaagttgag caagcttgtt
     3061 tttggtgcca tagtgcatac cttctccatc gtgttctcct gaagttccag cactgtttat
     3121 aaaaaattct ttttctaaat ttgctttttt gacaagatct ttcatgataa attctgccat
     3181 aggcgaacgg catatattgc ctaagcatat aaagagtatt tttttcattt ttatccttga
     3241 gttttaatta aaaattataa aaaatatcat acaataaatc catggaaaat ttcaatagaa
     3301 ctttgcttgt gtgttggttt ggtgttttta ccacaagtat ggggcttagt caaatcgctc
     3361 cgattttgcc tttttatatc aaagaactag gacatgttga tacgagcgag atagcgtttt
     3421 attcaggact tgcttttggg atcactccgc tttttatggc tgttttttca cctttgtggg
     3481 cttttttggg tgcaaagtat ggttataaaa atatgcttct tcgtgcaagt tttgggatgt
     3541 ccgttttaac cttatggctt agctttgctc atagtgcttt agaagtggtt tttgtacggg
     3601 gtttaacagg gataatttca ggttttactt ctgctgctgt tgtgtttatc gccgtgatag
     3661 cgcctaaaga aaaagtggct tatgctttag gaactctttc tacggcttct ataagtggaa
     3721 gtttacttgg gcctttgttt ggtggctttg tggctgaatt ttttagcatt agtgcggttt
     3781 ttgatgtggt ggcttttttg atcgcttgtt cttttgtgac gatttatttt ttcatccatg
     3841 ggagaaaaat tcaaaaagag gcgaagaaaa atactcaaaa agtgaaagaa aacaaaaccc
     3901 ttatcatcgt tctttttatc actacttttg tgatacaatt tggtactttt ggagtgatgc
     3961 cgattttaag tatctatgtt gagcaaattc atcaaggtgg aaatttggct ctttgggcgg
     4021 gtatagtggt ggctgcaagt gggattagca atcttttttt cgcaccaaaa cttggaaaaa
     4081 tcgccgataa gatagggcct agtaagatta tttttggagc tttgatattt tgtggaattt
     4141 gcttttactt gcaggctgta gcaagtaatg tttatacgct tattttcgtg cgtttactta
     4201 taggtgtagg acttggaggg cttttgcctt gtgtgaatgc cttgcttaaa aaaagtgtga
     4261 gtgctaaaaa tttaagtgtg atttttggtt ttaatcaaac ttgtcaattt ttgggaaatt
     4321 tttgcggtgc ttttggcgga gggcttatgg cttctcattt tagcgtggaa tttgttttta
     4381 cttttgtgtg tttgattttt atcattaatg cttttatttt cttggcgttt gagaaaaaat
     4441 atatcttttc aaatcaaggt ttataaattt agaaaggttt aaaatggaaa tgattttatt
     4501 tgttttagtg atgattttac ttgtgctttt gtttgtagtg ctttttaggc agtataaaag
     4561 ccctaaaata gaagaaaaaa gcacgcaaag ttttagcgat atcatgcaac ttaaatccat
     4621 aggagaatta agtgtttttc aagtttttag taaagagatt gtcactaaaa aagatagcgc
     4681 ttttaatgga atttggaaaa atcttttagg atggtctttg agtgaaagac agattgcttt
     4741 gatttttgaa tttgagatca ctttcttgta tgatttaagg gataaaaact ttgatatttt
     4801 gcctttaggg gacgatgctt ataagatcat catgccagag tgtagataca aacacagcat
     4861 catagatatg aaattttatg atgaaaaaaa tgctaaattt ttaccttttt tactgcctga
     4921 ttctatcaat agtacgggga ttagttttag tgaaagtgat aaaaacaaac tcataaaaga
     4981 agccaaagat gaggttaaag acttgtcttt aaatcttatc caaaatttag aaagcaaaat
     5041 ccataaaagt gctaaggata ctttagaagc tattgctaaa ggttttgggg ctaagagagt
     5101 ggaatttgaa tttaaggata acacacaaaa gctagatgta agttagcttt tttcttttct
     5161 tgcttgggta atgctttttc cacctagtcc gtaattatcc gtatcgattt catcgataat
     5221 taccacagtc gagcttttat ttttgtttaa aaccttagca agtaaatccg ttactcctgc
     5281 gataagctct tgtttttgtt ctgttgtagg ttctccgttt tctttggtga tgcgtatatt
     5341 tacaaaaggc atttttaact ccttaaattt ttataatt
//
LOCUS       DAPIWQ010000111         5320 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.112, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000111 DAPIWQ010000000
VERSION     DAPIWQ010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5320
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.112"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..1238
                     /locus_tag="RJ267_001400"
     CDS             <1..1238
                     /locus_tag="RJ267_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HDV7389244.1"
                     /translation="VNFYYRQILEKFENSYFAEDLTKVIIGIDCDYLDANELSFSEFK
                     AKYYEALSKNKICDFAGFFGVFSANFVSLFEKIPLSSKKNYDFPLFLFANAKAYLIYE
                     KNSKMFFKFGASKYFEYLKDDIEPMKKKQKNDFEILNSLEDEKNDFLKMCEKAKEYLL
                     SGDIFQVVLSKQLCIKHQVNAFDYYESLSALNPSAYMFYFPSKYGVVLGSSPEFLLKI
                     KKREIYLAPIAGTRNLENNCDLLALEKDLLSDEKELSEHKMLVDLARNDASKFGTQTR
                     VENLFSIIKNKFVMHIVSEVYANMKEDASIFDVIEAVFPAGTLSGAPKIRALEITSEL
                     EDCDRGIYGGAVGFLNFNEDITLAILIRCAFFTQDKAYLASGAGIVLQSESQKEYAEI
                     CAKRKALLVAFENLKKENQ"
     gene            1235..2836
                     /gene="trpD"
                     /locus_tag="RJ267_001401"
     CDS             1235..2836
                     /gene="trpD"
                     /locus_tag="RJ267_001401"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HDV7389245.1"
                     /translation="MILLIDNYDSFVFNVKSMLEQLSNDEILVRRNDAISLSEIKNLN
                     PTHIILSPGPKHPSQSGICLEIFKARLNIPVLGICLGHQALALAFDSLVVKMQEPMHA
                     KNSLIKQCRENELFSNLPSNFSVMRYHSLEVKQLSDELEILALDEKGVIMALGHKNLP
                     YYGVQFHPESYFSEYGLQLFSNFLKQDIKKPQKQENPLSFYLQKMSENHFLQSDDFEQ
                     ICKIIMSKDYEILQVVALLILITEKSLNEKSLSAFVRQILRYSQTFSDESEMIDICGT
                     GGDGFKSINVSTTSAFILAALGVKVAKHGNRAISSSSGSTDVLEALNITTPNTLESVL
                     KQLNNQGLSFLHAPFFHPLVGELKEIRSRLGVRTVFNVLGPLLHPNLKLKYQLMGNYH
                     APVHRLLIEVLKNLGRKKALVVRGNDGMDELSICDESKIYELCEGEILEYSICPEQFG
                     FKRAFHSEIIGSSAYDNAKDLKDILSGRMQGAKFDLVVLNAMFALYTANKASSPLVAK
                     DMILEAIYSGKVIEYFKEYQAYAKA"
     gene            2823..3422
                     /locus_tag="RJ267_001402"
     CDS             2823..3422
                     /locus_tag="RJ267_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HDV7389246.1"
                     /translation="MLKLKICGIKDEKNAKDLAFLNIDFFGLIFAKSPRRVSLEQARN
                     LSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQNVFVW
                     QVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLGSYTKDFILAGGIGLDN
                     VHKAVKTGAKILDLNSKLEDEKGLKDINKIKQILKELKK"
     gene            3419..4597
                     /gene="trpB"
                     /locus_tag="RJ267_001403"
     CDS             3419..4597
                     /gene="trpB"
                     /locus_tag="RJ267_001403"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HDV7389247.1"
                     /translation="MKKAYYGDFGGQFLPESAMFALNELEGAFLKFSKDKLFKKELNE
                     LLKTYVGRPTPLYFARNLSKKYQHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAVQSGL
                     KTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNK
                     KVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKGKTGIIH
                     GMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKL
                     LCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVVNLSGRGDKDMQMIRDYKKGVIYG
                     "
     gene            4590..>5320
                     /locus_tag="RJ267_001404"
     CDS             4590..>5320
                     /locus_tag="RJ267_001404"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HDV7389248.1"
                     /translation="MVDFRKFYKENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILEL
                     GVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTKKALVFMVYYNLIFSYGL
                     EKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH
                     AKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVA
                     DGVIVGTSIVKCFKQGNLDIIMKDI"
BASE COUNT         1872 a          592 c         1050 g         1806 t
ORIGIN      
        1 atgtaaattt ttattacaga caaatccttg aaaaatttga aaattcttat tttgcagagg
       61 atttgactaa ggtaattata gggattgatt gtgattattt agatgctaat gaattatcct
      121 ttagcgagtt taaggcaaaa tattatgaag ctttaagcaa gaataaaatt tgcgactttg
      181 ctggattttt tggagttttt agtgcaaatt ttgtatcttt gtttgaaaaa attccacttt
      241 cttctaagaa aaattatgat tttcctttat ttttatttgc caatgctaag gcttatttga
      301 tttatgagaa aaatagcaag atgtttttta aatttggtgc ttcaaaatat tttgaatatt
      361 taaaagatga tattgaacca atgaaaaaga aacaaaaaaa tgattttgaa attttaaatt
      421 ctttagaaga tgaaaaaaat gattttttaa aaatgtgcga aaaagccaaa gaatatcttt
      481 taagtggaga tatttttcaa gtggtcttaa gtaagcaact ttgtatcaaa catcaagtaa
      541 atgcttttga ttattatgag agtttaagtg ctttaaatcc aagcgcttat atgttttatt
      601 ttccaagtaa atatggtgtt gttttgggtt cttctccaga gtttttattg aaaattaaaa
      661 aaagagagat ttatttagcc cctattgctg gaactagaaa tttggaaaat aactgtgatc
      721 ttttagcttt agaaaaagat cttttaagcg atgaaaaaga acttagtgaa cataagatgc
      781 ttgtagattt agcaagaaat gatgcttcta aatttggcac tcaaacaaga gtggaaaatc
      841 ttttttctat tattaaaaat aaatttgtaa tgcacatagt gagtgaagtg tatgccaata
      901 tgaaagaaga tgcgagtatt tttgatgtga ttgaagcagt ttttccagcg ggaactttaa
      961 gcggagctcc taaaataaga gctttagaga tcactagcga gcttgaagat tgcgatcgtg
     1021 gaatttatgg tggtgcggta ggatttttaa attttaacga agacataact ttagcgattt
     1081 taatccgttg cgcttttttt actcaagata aggcttattt ggcaagtggg gcgggtattg
     1141 ttttgcaaag tgagagtcaa aaagaatatg cagaaatttg tgctaaacgc aaggcgcttt
     1201 tggtagcttt tgaaaattta aaaaaggaaa atcaatgata cttttaattg ataattatga
     1261 ttcttttgtt tttaatgtta aaagcatgtt agagcaactc agcaatgatg aaattttagt
     1321 aagaagaaat gatgcaattt ctctgagtga aattaaaaat ttaaatccta ctcatattat
     1381 tttaagtcct ggtccaaagc atccaagtca aagtgggatt tgtcttgaaa tttttaaagc
     1441 aaggcttaat atccctgttt tgggcatttg cttaggacat caagctttag ctttagcttt
     1501 tgattcttta gtggttaaga tgcaagagcc tatgcatgca aaaaattctt tgataaaaca
     1561 gtgcagggaa aatgaattat tttctaattt gccttcaaat tttagtgtaa tgcgttatca
     1621 ttctttagag gttaaacagc ttagtgatga gcttgaaatt ttagcccttg atgaaaaggg
     1681 tgtgattatg gctttgggac ataaaaattt accttattat ggtgtgcaat ttcatcctga
     1741 aagctatttt agtgaatatg gcttgcaact tttttctaat tttttaaaac aagatataaa
     1801 aaaaccacaa aaacaagaaa atcctttaag tttttatttg caaaaaatga gtgaaaatca
     1861 ttttttacaa agcgatgatt ttgagcaaat ttgtaagatt attatgtcta aagattatga
     1921 aattttacaa gtagtggctt tgttgatttt aatcactgaa aagtccttaa atgaaaaatc
     1981 tttaagtgct tttgtaagac aaattttaag atattctcaa acttttagtg atgagagtga
     2041 gatgattgat atttgtggaa caggtggaga tggttttaaa agtatcaatg tttctacgac
     2101 tagtgctttt attttagcag ctttaggagt aaaagtagcc aaacacggaa atcgtgccat
     2161 ttcaagttct agcggaagta cagatgtgtt agaagcttta aatataacta ctccaaacac
     2221 tttagaatca gttttaaaac aactaaataa tcaagggctt agttttttac atgctccatt
     2281 ttttcatcct ttagtaggag aacttaaaga gatcagatca agacttggag taagaacggt
     2341 ttttaatgtt ttaggtcctt tattgcaccc taatttaaag ttaaaatatc aacttatggg
     2401 aaattatcac gcacctgtgc ataggctttt gatagaggtt ttaaaaaatt taggacgcaa
     2461 aaaagcttta gtggtaagag gaaatgatgg tatggatgag cttagtattt gcgatgaaag
     2521 taaaatttat gagctttgtg aaggagaaat tttagagtat tctatctgtc ctgaacaatt
     2581 tggttttaaa agagcttttc atagtgaaat cataggatct agtgcatatg acaacgctaa
     2641 agatttaaaa gatattttaa gcggtagaat gcaaggggca aaatttgatt tggtagtttt
     2701 aaatgctatg tttgcacttt atacagccaa taaagcaagt tcgcctttag tggctaaaga
     2761 tatgatttta gaagccattt attcaggtaa ggttatagaa tattttaagg agtatcaagc
     2821 ttatgctaaa gcttaaaatt tgtggtatta aagatgaaaa aaatgccaaa gatttagctt
     2881 ttttaaatat tgattttttt ggacttattt ttgctaaaag tccaagaaga gtgagtttag
     2941 aacaagcaag aaatttaagt gcaatttttc atgaaaaaga taaaaaagtt gtcggtgttt
     3001 ttgtagatga aaatttggaa caaattttaa gatgtattaa agaagctaag cttgatggga
     3061 tacaaattta tcgcactatt accaaagaag aatttgaaat tttaaaggtg caaaatgttt
     3121 ttgtttggca ggtgattagt gtggaaaata gtttagattt aaaaagtgaa atttttgcta
     3181 atttagtact ttttgatgct aagggaattt taaagggcgg taatggaata agttttgatt
     3241 ggactttatt aggttcttat actaaagatt ttatattagc cggaggcata ggtttggata
     3301 atgttcataa ggctgtaaaa acgggagcta aaattttaga tcttaattca aaacttgaag
     3361 atgaaaaagg cttaaaagat atcaacaaaa taaaacaaat tttaaaggag ttgaaaaaat
     3421 gaaaaaagcg tattatgggg attttggtgg gcagtttttg cctgaaagtg caatgtttgc
     3481 tttaaatgag ctagaaggtg cttttttgaa attttctaaa gataaactct ttaaaaaaga
     3541 attaaacgag cttttaaaaa cttatgtagg gcgtcctact ccactttatt ttgctagaaa
     3601 tttaagcaaa aaatatcagc atgaaattta tttaaaacgc gaggatttaa atcataccgg
     3661 agcacataaa atcaataatg ccatcgctca agccctttta gcaaaaaaaa tgggaaagaa
     3721 aaaaatcata gcagaaacag gagcaggtca acacgggctt gcaacagcca ctgcagcagc
     3781 acttttagga cttgaatgtg aaatttatat gggggcaacc gatgtgcaaa gacaggcttt
     3841 aaatgtttat aaaatggagc ttttgggtgc taaaattcat gcagtacaaa gtgggcttaa
     3901 aactctaaaa gaagctacta ctgcggctat tcaagcttgg gttggagata ttaaaaatat
     3961 tttttatgtg gttggaagtg cggtaggtcc ttatccttat cctaaaatgg taatgcattt
     4021 tcaaagtatt ataggaaaag aatgcaaaat gcaacttcaa aaactcaata aaaaagtaga
     4081 ttatattatc gcagctgttg ggggtggaag caatgcagct gggatttttt atgattttat
     4141 caaagatgaa aatgttaaac ttataggtat tgaagcaggg gggcttggta ttgatacgcc
     4201 ttatcatgca gcgactttaa ataagggaaa aacaggcatt attcacggta tgaaaaccaa
     4261 ggttttacaa gatgatttag gcaatatctt gcctgtacat agtgtttctg cagggcttga
     4321 ttatccagga attggtcctt tgcatgcttt tttatttgaa agcaaaagag cgcaatatca
     4381 tgctataagt gatgaagaat gtatgcaggc tttaaaatta ctttgtaaag aagaaggtat
     4441 tattgcagcg attgaaagtt cgcatgcttt ggcattttta gaaaaacttt gtccaacttt
     4501 aaaaaagaaa agcgtgatag tagtaaatct ttcaggcagg ggagataaag atatgcaaat
     4561 gattagagat tataaaaaag gggtgattta tggttgattt tagaaaattt tataaagaaa
     4621 atgcaaatgt ggcttatacg gttttaggtt atccaaatct tcaaacaagt gaagcttttt
     4681 tgcaaagatt ggatcaaagt cctattgata ttttagaact tggtgttgct tatagtgatc
     4741 ctattgccga tggtgagatt attgcagatg cggcaaaaat agctcttgat caaggcgtgg
     4801 atattcatag tgtttttgag cttttagcta ggataaaaac taaaaaagct ttggttttta
     4861 tggtttatta taatttaatt ttttcttatg gcttggaaaa atttgtgaaa aaagcaaaat
     4921 ctttagggat ttgtgctttg attgtgcctg aattgagttt tgaagaaagt gatgatttga
     4981 ttaaagagtg tgaaagatat aatatagctt taattacact tgtaagtgtt acaaccccta
     5041 aagaaagggt taaaaagtta gtaaaacatg ctaaaggttt tatttattta ttagcaagca
     5101 taggtattac aggtacgaaa agtgtcgaag aagcaatctt acaagataaa gtaaaagaaa
     5161 tcagatcttt tacaaatttg cctatttttg taggctttgg cattcaaaat aatcaagatg
     5221 taaaaagaat gagaaaagtt gctgacggag tgattgtggg aactagcata gtaaagtgtt
     5281 ttaaacaagg aaatttggat ataataatga aagatattga
//
LOCUS       DAPIWQ010000112         5300 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.113, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000112 DAPIWQ010000000
VERSION     DAPIWQ010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5300)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5300)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5300
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.113"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..302)
                     /locus_tag="RJ267_001405"
     CDS             complement(<1..302)
                     /locus_tag="RJ267_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HDV7389249.1"
                     /translation="MKYEFLCKNPDSKKLIVVFGGFASHSSHFSHLKSDKNVILFYDY
                     ENFDLNFDFKAFDELFLIAFSMGVCVANRLLKELNFKQKIAINGTNLGIDKSKGIHP"
     gene            complement(299..1441)
                     /locus_tag="RJ267_001406"
     CDS             complement(299..1441)
                     /locus_tag="RJ267_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HDV7389250.1"
                     /translation="MKLEKILQDLEQNHNLRTLTPLKHENKFVYKQDHKLLNLVGNDY
                     LYLASSKELKAEFLNTLKEQDLFFSSSSSRSLSGNFEIYEKLESFLKTKFKDKEILHF
                     NSGYHLNISCIAALSSVSKTLFLTDKFIHASMIDGLRLGRADFFRFHHKDMNHLESLI
                     QKHYENYENIIVLSEALFSMDGDFSDFKTLCELKRRYDKIKLYIDEAHSVGCFDEEGL
                     GLVKKLALENEVDFLVFTFGKALASMGACIICDEKYKKFFINKARAFIYSTALPPINV
                     AWTQFIFKKMPYFKKEREKLELLSTFFKSKLQEKNHIVLGDAYIICLLLGENKKALEI
                     SQKLQKAGFFAPAIKEPTVPKNTARIRFSLHAGLNTEELERIIELL"
     gene            1509..2792
                     /locus_tag="RJ267_001407"
     CDS             1509..2792
                     /locus_tag="RJ267_001407"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HDV7389251.1"
                     /translation="MQNQILKNLDLKHIWHPCTQMKDHETLPLIPIKKAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHVILAGFTHEPIIKLSARLCEKV
                     GRNFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKTLLLECLSTPVPQGKDYTKELEILKDILEKHSNEICAFILEPLVQCAGNM
                     HMYEARFIDEAIKLCHDFNVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTKDEIYNAFYAPYSEQKAFLHSHSYTGNTLACAAANVVLDIFENENILE
                     KNQILSTFIQQEFSKLKKFDFLGNFRTCGMISAFDILSHKHERVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYVVESLEQIFKEF"
     gene            complement(2779..3384)
                     /gene="bioD"
                     /locus_tag="RJ267_001408"
     CDS             complement(2779..3384)
                     /gene="bioD"
                     /locus_tag="RJ267_001408"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HDV7389252.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKVFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSENLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDTFQ
                     DDFIKNYAKIPIINLDFFDENSILNQDFKEQMQEILQLKIP"
     gene            complement(3394..3708)
                     /locus_tag="RJ267_001409"
     CDS             complement(3394..3708)
                     /locus_tag="RJ267_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7389253.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLITVIIACTVGLKF
                     LS"
     gene            complement(3711..4049)
                     /locus_tag="RJ267_001410"
     CDS             complement(3711..4049)
                     /locus_tag="RJ267_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7389254.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWHYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIVILLLSI
                     IALKWISKEA"
     gene            4183..4719
                     /locus_tag="RJ267_001411"
     CDS             4183..4719
                     /locus_tag="RJ267_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HDV7389255.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            4716..5261
                     /locus_tag="RJ267_001412"
     CDS             4716..5261
                     /locus_tag="RJ267_001412"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HDV7389256.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSTYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHAKKA
                     LLELIENDDLSAISSKYSLKA"
BASE COUNT         1908 a          812 c          815 g         1765 t
ORIGIN      
        1 ggatgaattc cttttgattt atctatgcct aaatttgtgc catttatggc tattttttgt
       61 ttaaaattaa gctcttttaa aagtctattt gccacacaaa cccccataga aaaagcgatt
      121 aaaaaaagtt catcaaaagc tttgaaatca aaatttaaat caaaattttc ataatcataa
      181 aataaaatca catttttatc gctttttaaa tgcgaaaaat gactagaatg tgaagcaaat
      241 cccccaaata ccactataag tttttttgaa tcaggatttt tacataaaaa ttcatatttc
      301 ataaaagctc tattatcctt tcaagttctt ctgtgttaag tcctgcgtgc aaagaaaaac
      361 gaattctggc tgtatttttt ggcacggtag gttctttgat cgcaggagca aaaaaaccag
      421 ctttttgaag tttttgtgaa atttctaagg cttttttatt ttcacctaaa agcaagcaaa
      481 taatataagc atcgcctaaa acgatgtgat ttttttcttg caatttactt ttaaaaaaag
      541 tgcttaaaag ctctaatttt tctctttctt tcttaaaata aggcattttt ttaaaaataa
      601 attgcgtcca agctacatta ataggtggca aggctgtaga ataaataaaa gctctagcct
      661 tgttgatgaa aaatttctta tatttttcat cacatattat acaagcaccc atggaagcaa
      721 gggcttttcc aaaggtaaaa accaaaaaat ccacttcatt ttctaaggct agttttttaa
      781 caagccccaa accctcttca tcaaaacaac ccacgctgtg tgcttcatct atataaagct
      841 taattttatc ataacgcctt ttaagctcac acagagtttt aaaatcgcta aaatctccat
      901 ccatactaaa caaagcttcg cttaaaacga tgatattttc ataattttca taatgttttt
      961 ggattaaact ctctaaatga ttcatatctt tatgatgaaa acgaaaaaaa tcagccctgc
     1021 caagtcttaa gccatcaatc atacttgcat gaataaattt atcggttaga aaaagcgtct
     1081 tagaaacgct agaaagtgct gctatacaag agatatttag atgatagcca ctattaaaat
     1141 gtaaaatttc cttatcttta aatttagtct ttaaaaaact ttctaatttt tcataaattt
     1201 caaaatttcc actcaaactt cttgaactcg aacttgaaaa aaacaaatct tgttctttta
     1261 gggtgtttaa aaactcagct tttaactctt tggaagacgc caaataaaga taatcatttc
     1321 ctactaaatt taaaagtttg tgatcttgct tataaacaaa tttattttca tgttttaaag
     1381 gtgttagagt tcttagattg tgattttgct ctagatcttg caaaattttt tcaagcttca
     1441 tttttttcct gtaaatttaa aaatttaaag tattattttg ccaaaatatt tttaaaaaag
     1501 aagttataat gcaaaatcaa atcttaaaaa atctcgattt aaaacacatt tggcaccctt
     1561 gcacacaaat gaaagatcac gaaaccctac ctttaattcc tataaaaaaa gcaaaaggtg
     1621 tatggcttta tgattttgat gataaagctt atatggattg tgtgagttct tggtgggtca
     1681 atctttttgg tcattgtaat gaaaaaatcg caaatgccat taaaaaacaa gttgatgagc
     1741 tagagcatgt gatcttagca ggctttacac atgagcccat tatcaagctt tctgcaagac
     1801 tttgcgaaaa agtaggcagg aattttaaca aatgttttta tgcagataat ggatcaagtg
     1861 ctattgaagt agcacttaaa atgagttttc attatcattt aaataaggga gtgaaaaaaa
     1921 gtaaattttt atctttaagc aattcctatc atggcgaaac cttaggggct ttaagtgtgg
     1981 gcgatgttgc actttataaa gatacttaca aaaccttgct tttagagtgt ttaagcactc
     2041 ctgtgccaca aggtaaagac tatactaaag agcttgaaat tttaaaagat attttagaaa
     2101 aacactcgaa tgaaatttgc gcttttatac ttgaaccctt ggtgcaatgt gcgggaaata
     2161 tgcacatgta tgaagcaagg tttattgatg aagcgatcaa gctttgccat gattttaatg
     2221 tgcaagtgat ttttgatgaa attgcagtgg gctttggacg cacaggcact ttgtttgcct
     2281 tgcatcaatg caaacaaagc cccgatttta tctgtctttc aaaggggatt acaggaggat
     2341 ttatgcctct ttctgtagtg cttacaaagg atgaaattta taatgccttt tatgcaccct
     2401 atagcgaaca aaaagccttt ttacactctc atagttatac aggaaacact ctagcttgtg
     2461 cagcagctaa tgtggtttta gatatctttg aaaatgaaaa tattttagaa aaaaatcaaa
     2521 ttttaagcac ctttatccag caagaatttt caaaacttaa aaaatttgat tttttaggaa
     2581 attttagaac ttgtggaatg atcagtgctt ttgatatttt aagccataaa cacgaacgcg
     2641 tgggactttt tgtatttcaa aaagccttag aaaaaggttt gcttttaaga cctttagcaa
     2701 atacgattta ttttatgcct ccttacatca tcacaaaaga acaaatcgtt tatgtagtag
     2761 agagtttaga acaaattttt aaggaatttt aagttgcaaa atttcttgca tttgctcttt
     2821 aaaatcttga tttaaaatgc tattttcatc aaaaaaatca agattaatta tgggaatttt
     2881 tgcataattt tttataaaat catcttgaaa ggtatctttt ttgcccatca tcacaagggc
     2941 taaaagattg atatttcttt gctttaaagc ttcaatgcta agcaagatat gattaatgct
     3001 tccaagatag tattttgcta ctaaaatcgt agggtgttta aaaatattca caaaatcaat
     3061 catagtgtaa ttttcatcca taggagaaaa aagcccaccc gcaagctcaa taagtaggtt
     3121 ctcacttttt ggtaaaatga tatctaaggc tttataatca agcttttctt tgatttttcc
     3181 aagatgaggg gaagctggag tttgcaaaaa aataccttct ttaaaaacct ttgtttttgg
     3241 gctaaatttt gcaataaact cactatctgt tggagttcct gcttgaatga gtttaaaata
     3301 atcatagtta aaattcgcgc aaaaagctgc actaaaatgt gtttttccta catcagtatg
     3361 tattccactc acataaattt gcacaaaaaa tccttaagaa agaaatttta aacctactgt
     3421 acaagcaata atcacagtga ttaaaaaaag ttttaaaaaa cttttacttt ctttataaaa
     3481 aagtactcct atcattaccc caccagcagt tccagctcct gtccatatag cataagcaac
     3541 actcatagcg atattttgca tacttaaact taaaaaagta aaagaaaatc caaaacacac
     3601 tatcaaagcc aaaaggtaaa gcttattttt agtgcttaca agttctttca tgatcaccac
     3661 gccaaaaatt tcacaagcag tagctaaaaa caaataaaac cattccatat ttaagcttcc
     3721 ttgcttatcc atttaagggc tataatgctt aaaagtaaaa tcactataag cacaagttta
     3781 attatagaaa cagcctcgtt aaaaataaac atttcattta aaaccacccc aatagtgcca
     3841 atgcctacaa aaacactata agtaatactt acttcaagtc tttcacaagc ttttaaaaag
     3901 caagtaaaag aaatacaaac cccaatggct gttaaaatat agtgccaaat ttctgtagaa
     3961 tacttaagtc cactgaccca aaaacattct ataatcccgc ctaagattat taaaaaccaa
     4021 gctatattaa tattgaattt ttcattcaca tgaagcctta aattaacata atatttgtaa
     4081 aacaaattat atcttaaaga aattaaaaga agctataaat ttacttttcc ataagccaaa
     4141 attagatata atcaaagctc attttttaag aaaggataaa agatgttaga aggtatcgtt
     4201 agagagagta tcggtagaaa agctgctaaa gctttaaaaa gagatggtta tctaattgca
     4261 aacatctatg gaaaaggatt agaaaacatc aatgccgctt ttaaagtaaa tgagtttatt
     4321 aaggaagttc gtaaaaaaac tactttaatt tttgatgtaa aagtaggttc tcaaacttta
     4381 agcgttgtag ttgtggatta tcaaaaagat cctgtaactg cagaacttaa acatgtggat
     4441 ttaaaagttg cgcaaaaagg tgtgatttct aaatacatgg ttccagttaa aatcacagga
     4501 acagctatag gtcttaaaaa taaaggtgtt ttaattcaat caaaaagaag attaaaagta
     4561 aaatgtgcag ctgaaaattt accaaatttc ttcgaacttg atgtaagtaa acttgatgtg
     4621 ggtgatgctt tacttgttcg tgatattgta gttcctgcgg gagtaactat gattgatgct
     4681 gatagagtag cggttgtagg tgtagaaaaa gctagatgat tttagtcgta gggcttggca
     4741 atataggcgt agagtatgaa aatacccgtc ataatgtcgg ttttatgcta attgacttac
     4801 ttttaaaaga aagcaatttt acaaatctta caaactctaa atttaaagga gagcttttta
     4861 aaataggttc ttctttactt cttcttaaac ctagtactta tatgaataat tcaggactta
     4921 gcgtaaaagc agtgaatgat ttttataaat gcgaaagaat gatagttatc catgatgata
     4981 tagatataaa tttaggagcc ttgcgcttta aaaaaggcgg ttcaagtggt ggacataatg
     5041 ggcttaaaag catagatact ttatgtggaa atgactatga aagagtgcgt ataggagtgg
     5101 gaaagggtga aaatgtgatt tcccatgttt taggtaaatt taaatccgaa gaagaaataa
     5161 ctttaagcaa agttttagag catgcaaaaa aagctttgct tgagcttatt gaaaatgatg
     5221 atttgtctgc tatatcatcc aaatacagcc taaaggctta agatgtggat attttttcgt
     5281 tttatttcag ggatttattt
//
LOCUS       DAPIWQ010000113         5223 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.114, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000113 DAPIWQ010000000
VERSION     DAPIWQ010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5223)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5223)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5223
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.114"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..785)
                     /locus_tag="RJ267_001413"
     CDS             complement(<1..785)
                     /locus_tag="RJ267_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389257.1"
                     /translation="MKFFLLVFCFVNLALAKVYKGELHFYHLQDKEIFAIVYDNAPMT
                     PLFDRDKNQTSSSFLIVDDINGNLEIPLVKINDFWQDERKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFNDDFKEFHPVHKGVFSFEQIRQKPIFLQD
                     GKISFEEWYYFYEDGMSRAILELNNFVYDINAHAFVKLNDLYNTENQKFQNLLHEKLK
                     NTCDECFEDLQNLQFNNNFLLNNGKLKICYLPFEGHFLDENICV"
     gene            complement(796..1272)
                     /locus_tag="RJ267_001414"
     CDS             complement(796..1272)
                     /locus_tag="RJ267_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7389258.1"
                     /translation="MKHCLALCFVFFLCACSVKNQNFSSQSLMVLIASPMIKINDTAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINAVCYDKQVFNQKFFKNVYYDDILSDIL
                     KANPLWQGKNLEKTDCGFEQNLKAKNYEIFYQVCDNKVSFFDKISHTKIILTHIQN"
     gene            complement(1281..1772)
                     /locus_tag="RJ267_001415"
     CDS             complement(1281..1772)
                     /locus_tag="RJ267_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HDV7389259.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKESIFKLSSSSEGKLDVLKDIVISKLIKRGINPKAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKVIKDSKLKVNSSIRGEEIRVAAKQIDDLQAVMKLVKELDLELNISFK
                     NLK"
     gene            complement(1762..2697)
                     /locus_tag="RJ267_001416"
     CDS             complement(1762..2697)
                     /locus_tag="RJ267_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HDV7389260.1"
                     /translation="MKIVCLDAATLGDYDLSVFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDACKNLKLILETATGVNNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQVLYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGTIGKEV
                     AKISKAFGAEIYYYSTSGANKNADFVHLELKDLLKTCDIISIHAPLNEKTKNLLAFEE
                     LKLLKDNAILINVGRGGIVNENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(2700..3869)
                     /locus_tag="RJ267_001417"
     CDS             complement(2700..3869)
                     /locus_tag="RJ267_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HDV7389261.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVINNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLAHIANEAGFQTNFSFVDEVEFS
                     EEGIFKEGENYEYWFKLIPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENVGPYG
                     NNKAIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(3879..4484)
                     /locus_tag="RJ267_001418"
     CDS             complement(3879..4484)
                     /locus_tag="RJ267_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HDV7389262.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCGSNNDNADTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDALIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSASSAKKSGFFGGGSKATSSSSSFGS"
     gene            complement(4604..4816)
                     /locus_tag="RJ267_001419"
     CDS             complement(4604..4816)
                     /locus_tag="RJ267_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HDV7389263.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            4976..>5223
                     /locus_tag="RJ267_001420"
     CDS             4976..>5223
                     /locus_tag="RJ267_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HDV7389264.1"
                     /translation="MQGHITNYTKKRYFVYLIASIIIFSLPFIRINENHFFLLSFDHS
                     KLNLFFISFSTQEFYLMPFVLIFLFLFIFFITTLGGRI"
BASE COUNT         1754 a          951 c          569 g         1949 t
ORIGIN      
        1 acgcaaatat tttcatctaa aaaatgacct tcaaaaggta gataacaaat ttttagtttt
       61 ccattattaa gcaaaaaatt attattaaat tgtaaatttt gcagatcttc aaaacactca
      121 tcacatgtat ttttaagctt ctcatgtaaa agattttgaa atttttgatt ttcagtatta
      181 tataaatcat ttagttttac aaacgcgtga gcattaatat cataaacaaa attattcaac
      241 tctaaaatag cacgactcat accatcttca taaaaataat accattcttc aaaactaatt
      301 tttccatctt gtaaaaaaat aggtttttgg cgaatttgtt caaaactaaa tacaccctta
      361 tgaacaggat gaaattcttt aaaatcatca ttaaaaccta taaaatcaag actacgcttt
      421 atacgaatgc catcttgcgt ttcgacaagt tctaaagtag ttgttcctaa attttctcct
      481 tgaaaatttt tattatcata tgtaagcatt ttagaagaat tgattttata ttttttacgc
      541 tcatcttgcc aaaaatcatt tatcttaacg agtggaatct ctaaatttcc atttatatca
      601 tcaacaatta aaaaactaga acttgtttga tttttatccc tgtcaaaaag tggagtcata
      661 ggtgcattat cataaactat ggcaaaaatt tctttatcct gtaaatgata aaaatgcaat
      721 tcacctttat aaactttcgc taaagctaga tttacaaagc aaaataccag taaaaaaaat
      781 ttcaaactct atccttcaat tttgaatatg cgttaagata attttagtat gtgaaatttt
      841 atcaaaaaaa cttactttat tatcacaaac ttgataaaaa atttcataat tttttgcttt
      901 taaattttgt tcaaaaccac aatcagtttt ttctaaattt ttaccctgcc ataaaggatt
      961 tgcctttaaa atatcactta aaatatcatc ataatataca tttttaaaaa atttttgatt
     1021 aaacacttgt ttatcataac acactgcatt gatacaaatt ttatctttga ttttgagttc
     1081 aaaaaaagct tgccctagtt tataaacttc taaatttaaa gcattatttt ctttttttaa
     1141 aaaagctgta tcattgattt ttatcatagg ggaagcaatc aaaaccatca agctttgact
     1201 tgaaaaattt tgatttttca cactacaagc acaaagaaaa aaaacaaaac atagagctaa
     1261 acaatgtttc aaatttgacc ttatttgaga tttttaaaac taatatttaa ctctaaatca
     1321 agctctttta caagcttcat cacagcttgt aaatcatcga tttgttttgc tgcaacacga
     1381 atttcttcac cacgaatcga agaattaact ttaagcttgc tatctttaat aactttattg
     1441 atttttttag cattttcact atcaatagca tcgtttgctt tcaaatttaa acgaaacatt
     1501 gctccacttt cacgagaaag ctctttaata gctttaggat taattcctct tttgataagt
     1561 ttagaaatca ctatatcttt taaaacatca agttttcctt cactagaaga actgagttta
     1621 aaaatactct ctttttcgct taaatcaatc tcacacttaa ttccttttaa gtcataacga
     1681 ctatcaagtt cttttttagc ttgttcaaaa gcatttttta actcttgttt atctaaagct
     1741 gctgaaatat caaaactatg ttcacttgcc attttctatc cattctttta aattattata
     1801 aactatatcc attaaagcat ttaaagcctc cttgctcgcc cacgcaacat gaggagtgat
     1861 aataagattt tctttatttt taatgcttaa aagtggatga tttttcatca taggttcaat
     1921 ttctaaaaca tcaagcccta cacgaatatt tttttcatct atgattttag ctaaatcatt
     1981 ttcattgaca atcccacctc ttcctacatt aatcaaaatc gcattatctt ttaaaagctt
     2041 taattcttca aaggcgagta aatttttggt tttttcattt aaaggtgcgt ggatacttat
     2101 aatatcgcaa gtttttaata aatcttttaa ttccaaatgt acaaaatctg cgtttttatt
     2161 agctccactc gtagaataat aataaatttc ggctccaaaa gcctttgaaa tttttgccac
     2221 ttctttacct atggttccta aacctataat accatgtttt ttaccactta aggtgtttaa
     2281 aattctacta taatctgtaa aaataggact ttcacaccat ttaccctctt tgctccattt
     2341 gtcataataa agcacttgat ttaaaaaagc aaacataaat gcaaaagtat gttgcaccac
     2401 actcatagta gaatacccag cagcattttt tacaataata cctttttctt tagcatactc
     2461 aatatcgata ttattaaccc ctgtagcagt ttccaaaatg agttttaaat ttttacaagc
     2521 atcaatcaca tctttatcaa ttacaacctt gtttgtcatg gcgacattag catcttttaa
     2581 acgctctatg gtttgctctt tatttgttgt ggtataaatt tgcaaagaac caaatttttc
     2641 aaaaacactt aaatcataat cccctaaagt tgccgcatct aaacaaacaa ttttcatttc
     2701 taatccttta taatatgtcc tacaaattta gaataattat caagcacaag tcctcctttt
     2761 ctaaatccta agccacaccc ttcataagca aagaaaacac ctgcttgata gtattcgttt
     2821 tcacatgaat taaactctac atattcttga taaatagcct tattattccc ataaggacct
     2881 acattctcat gcaaagtttt tccatcttta attatactga tatttgcacc ttctctacca
     2941 aaaacaggtt ttttaacata gtttttacct tccaaaggag tatcttttgt ttctaaaagt
     3001 aatggatgat ttggataaag ttcccataga atttttaaaa ttcccttaga ttgaaataaa
     3061 agcgtataag caggatttaa aataattgct ctttgattac gcatgatttg agttaaaagc
     3121 atagcaagtt caccctcttc tatggctata tcttcccaag gaataagctt aaaccaatac
     3181 tcataatttt caccctcttt aaaaattcct tcttcactaa attctacctc atctacaaag
     3241 gaaaaattag tttgaaaacc tgcttcattg gctatatgtg caagcaattt tgtagtgatt
     3301 tcctcttctt tacttcctgc aacacttgaa aaaagaattt tccatccttg ataatgctct
     3361 tcaaaccctt caacactttc atcaagggta ataagtcttt taaaattatc catcaaactt
     3421 tcataaatgc tgttaaattg tgcgctttca tccattccat tttgttttaa aagtgcccat
     3481 tgtaaaatcg cactttcaaa aagagcagta ggggtatcag cattaaattc tataagtttt
     3541 ataggcttgc catcaagtcc acccgctaaa tcaaaacgcc catataaatg ccaatgaacc
     3601 tcattttccc aactcatctt aatcgcatca ataagattaa aaggaattcc aagctcatca
     3661 aaacgatcat tattaatcac ttcttgcgct gcagcaataa acatatcata aagctcattt
     3721 accgcttcat aataagcatt agcttcactt tccttaacac aaactaactt attgctaata
     3781 taatcacttc catcttcatc tgtatgccaa gaaaaaccta tattttctaa ataatctttt
     3841 tgaagtttgt ctacttgtaa taattgcatt atttatcctt aagagccaaa agaagaacta
     3901 gaacttgtgg ctttagagcc tccaccaaaa aaacctgatt ttttagcact tgaagcagag
     3961 cttgttgtgc ctgctttatt aaaactatta acactccttt gataagcact ttgatttgaa
     4021 aaagcaccgc gttgttggtt ggcaaaattt tgattattga aaagttttga acctatccaa
     4081 cttcctaaaa tagcacctgc agcacttgcg agtaaagttt cccctaaact caatccccca
     4141 ctactgattt gtccattgtc tttagttaaa tttgaagttc cattatcaat tttagctgct
     4201 tcttctttaa tcaaagcatc catttcttct ttggataaaa ttctttctgt accattaaga
     4261 tcttttaaaa ctacccttgt ttcatcactt ggatattgat ctttgatttt atactgccct
     4321 ggagctgttt cttcgataat tacaaaagct ccttgagcat tagccgcttg atttaaagta
     4381 tctgcattgt cattattact tccacaacct gctaaagcac ctccagcaac agctgctaaa
     4441 ccacctatca taccaatttg aatgattttt ttgatttttt tcataagttt atcctaaaaa
     4501 cagaaaattt aaattagaaa ttttaacaaa aaataataaa tactttttaa tttaatacca
     4561 aatgaagttt gtagatataa aaaagccctt tcgggctttt gggttagagt cttgactcgt
     4621 agcgtctaag catataaagt cttttaagca tttttttgcg tgctgaaatt ttttgttttt
     4681 tgcgaatttc agtcataggc tcaaaaaatc ttcttgctct tacttcagtc acaactagat
     4741 ttctatctac ttgttttttg aatttacgat acgcttcatc aaaagactcg ttaggatgca
     4801 ccttgattcc tggcacagtc ctcaccacct ttctgtgtaa atttttgttg tgaaatataa
     4861 ttataaaaca cttcttatta attctaactt agaaagcatt taaaaattgt tttagttttt
     4921 atcggttata atccttaatt acaaagtgct aaaaaattat aattaaggtc taaaaatgca
     4981 aggacacatt acaaactata caaaaaaacg atattttgta tatttaattg caagtattat
     5041 catattttcc ctacctttca taagaattaa tgagaatcat ttttttcttt taagttttga
     5101 tcattctaaa ttaaacctat tttttatttc tttttcaaca caagaatttt atctcatgcc
     5161 ttttgttctt atatttcttt ttttatttat tttttttatt acaactttag gtggaagaat
     5221 ttg
//
LOCUS       DAPIWQ010000114         5197 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.115, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000114 DAPIWQ010000000
VERSION     DAPIWQ010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5197)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5197)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5197
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.115"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            58..552
                     /gene="cetC"
                     /locus_tag="RJ267_001421"
     CDS             58..552
                     /gene="cetC"
                     /locus_tag="RJ267_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HDV7389265.1"
                     /translation="MKEIVLSENALITSKTDLKGNIIYANNDFLKYAGYKVDELLYKS
                     HNIVRHEDMPRTVFKCLWDYIQKGDEIFAFVKNKAKDGNFYWVFANVSASFDTNGNII
                     NYYSVRRAPNRKSLSIIEEVYKILLEKEQKSGINAGVSALMDIVSSYKMTYNELIFNL
                     QENN"
     gene            657..2039
                     /gene="cetA"
                     /locus_tag="RJ267_001422"
     CDS             657..2039
                     /gene="cetA"
                     /locus_tag="RJ267_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HDV7389266.1"
                     /translation="MIKHGLLLTIFLSVIGVLGVIFIHIFVGAIIFVLIAVLMIYLLR
                     QHKDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKKSKKLAEIADNLNNTIDGLEAYLR
                     EINTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLM
                     DLSLGNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMD
                     VVNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVA
                     DEVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKR
                     LEENSSALGVNFGSFAKRLILSVVKIDHILYKSNIYLNLNGAQNFNLESVDPISNLCQ
                     DERAQGVINELSSETELNLAKEFIKDNAKKAIEESSQDYIDQKAYDAIVNDIKSLEQR
                     SAEILAKLKI"
     gene            2057..2554
                     /gene="cetB"
                     /locus_tag="RJ267_001423"
     CDS             2057..2554
                     /gene="cetB"
                     /locus_tag="RJ267_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HDV7389267.1"
                     /translation="MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDVNNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRAEQQQGLNKGVEMLKNFCKDADKTYNELIFS
                     LQEAK"
     gene            2642..4501
                     /gene="mnmG"
                     /locus_tag="RJ267_001424"
     CDS             2642..4501
                     /gene="mnmG"
                     /locus_tag="RJ267_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HDV7389268.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     TRNKLLKLSNLEISQEQASALIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVN
                     PKAFSFRSRNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQIQMLRSVKGFENAKITRFG
                     YAIEYDYIEPTELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMK
                     EPLILRRDEAYIGVLIDDLVVKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLG
                     LLSEQDFTYIQNIANNLQKGLEFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVA
                     RASFDIEKLKKLDPIFEIMDNYSLREILNEAKYYHYISMQKAQVEKMKNLSELKIPEN
                     FDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDILQIYIKMQKKKA"
     gene            4502..>5197
                     /locus_tag="RJ267_001425"
     CDS             4502..>5197
                     /locus_tag="RJ267_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HDV7389269.1"
                     /translation="MLAFFIFLSTLVLLFWRPWNLPIWVFSSLGAFFVFIFQLVDFKD
                     VCFVFSLVWDSSLTLVGLIILSFSLEALGFFDFIASKILHFSREKNQEKIYISTKKLM
                     LFLLIFVFFLSAFFANDGAILIITPIIIALFSTLKDCKNHAFILSSFLLSLSFLCDAS
                     SNALVISNLTNIITANYFKIEFLEFAKNMFLPNFFVLLSTIVTVFVLYVRVLPKRLEF
                     KLIKKEQISLKLFF"
BASE COUNT         1828 a          637 c          917 g         1815 t
ORIGIN      
        1 tgttattggt aataattcta tttttgattt atttgtttta ttgggatgtt ttaaattatg
       61 aaagaaatag ttttgtctga aaatgcttta attacttcta aaacagatct taaggggaat
      121 atcatttatg ccaataatga ctttttaaaa tacgcaggtt ataaagttga tgaacttttg
      181 tataaatctc ataatatagt aagacatgaa gatatgccac gcactgtatt taaatgtctt
      241 tgggattata ttcaaaaagg agatgaaatt tttgcatttg tgaaaaataa agccaaagat
      301 ggtaattttt actgggtttt tgcaaatgta agtgcttcat ttgatactaa tggaaatatc
      361 atcaattatt attctgttcg tcgtgcacct aatagaaaat ctctttctat aattgaagaa
      421 gtttataaaa ttttacttga aaaagagcaa aaatcgggca ttaatgctgg agtttcagct
      481 ttaatggata ttgtaagttc ttataaaatg acttataatg aacttatttt taacttacaa
      541 gaaaataatt aaataagata tattttatct tttttattgt ataattttca cctagaagtt
      601 aaagcattgt tttgatttat gacttcaaaa aattttcaat aaaaaggggt aaatttatga
      661 taaaacatgg attattgtta actatttttc taagtgttat cggtgtttta ggtgtcattt
      721 ttattcatat ttttgttgga gcgataattt ttgttttaat cgctgtttta atgatttatt
      781 tgcttagaca acacaaagat gagcaaataa tgatagataa acttttggtt ctttgtagag
      841 agttaaagga gggtaatttc gacaatagaa tcatctatgt aaaaacaaaa aaaagcaaaa
      901 aattagccga aatagcagat aatcttaata atactattga tgggctagaa gcttacttaa
      961 gggaaattaa tacttctatt tcatgttctc aaaaaggtga attttatcgt aaggctttgc
     1021 ctgaaggttt aaaaggaatt tttgctcata atatcgaatt tataaataaa gctttagcaa
     1081 acatagaagt gacagcaaga tctactttta aaaatgcttt atcaagaact ttaatggatt
     1141 taagccttgg aaatcaaaat aaagacatgt ctcaaatttc tagctcatta aatcaagata
     1201 ttagcatgat gaaaaatgta tatgatacag tggatgccat ttctcataca gctacagaaa
     1261 atggttcaga ggtggattct cttcaaagtg ctatgggttc tttaatggat gttgtaaatt
     1321 cgagcaagga gacagtacaa acttttgtgg ctaattcaca aaatatcact tcagtggttg
     1381 aagtaatacg cgatatagcc gatcaaacca atcttttagc tcttaacgct gccatagaag
     1441 ctgcgcgtgc aggagagcat ggtaggggct ttgcggttgt ggctgatgaa gttagaaagt
     1501 tagcagaaag aactcaaaga tctacaagcg aaatttctat tgcaattcag actatgcaac
     1561 aagattttgt aaatatccaa agtggcagtg agcaagtttt taacattgtt agtgaatctg
     1621 aagaaagaat taataaattt tctcaagctt ttaaacgtct agaagaaaat agtagtgctc
     1681 ttggtgttaa ttttggatcc tttgcaaaga gattgatttt gtctgtggtt aaaatcgatc
     1741 atattcttta taaatcaaat atatatttaa atttaaatgg ggctcaaaat ttcaatcttg
     1801 aaagtgtaga tccaatttct aatctttgtc aagatgagag agctcaaggt gttattaatg
     1861 agcttagttc tgaaactgag ttaaatttag ctaaagaatt tataaaagat aacgctaaaa
     1921 aagcaataga agaatcaagt caagattata tcgatcaaaa agcttatgat gcgattgtaa
     1981 atgatattaa atcactagag caaagaagtg ctgaaatctt agcaaaatta aaaatataaa
     2041 ttaagagggt gggaaaatgt caagagaaat ttttttacaa gaagatagtt taattacttc
     2101 taaaacagat ttaaaaggta aaatagttta tgcaaatgat gattttttaa agtatgcagg
     2161 ttataccatg ggtgaagttt taaataaacc tcataacata gtaagacatg aagagatgcc
     2221 aaaaactgtt tttaaatatt tatgggatta tatgaaagaa ggcaaagaaa tttttgctta
     2281 cgtaaaaaat aaaaccaaag ataacaatta ctattgggtt tttgcaaatg taaccccatc
     2341 aatagatgtt aataataata tcataggcta ttattccgtt cgtcgtatgc caaataaaag
     2401 cgctatttct acaatagaaa gtctttatag cgatctttta agagcagaac agcaacaagg
     2461 cttaaataag ggtgttgaga tgcttaaaaa tttctgcaaa gatgcagata aaacttataa
     2521 tgagctaatc ttttctctcc aagaagctaa ataaattttt gttagactta aaacgagttt
     2581 gttttaagtc taaatattat ataatctttc ttttaaaaat tcacattttt caaggcaaaa
     2641 tatgtttgat gtcattgtta taggtggtgg acatgcaggt gttgaagcaa gtgctgctgc
     2701 tgctagaatg ggtaaaaaaa ccttactttt aactacattg attgagcaaa taggagcggc
     2761 aagttgtaat ccagccatag gtggacttgc aaaaggacat ttggtaaaag aacttgatgc
     2821 catgggtggt cttatgggtg aaatcaccga tgaagcaggg atacaatttc gcattttaaa
     2881 tgaaagtaag ggtgtagccg ttcaaggaag tagggcacaa attgatatgg ataaataccg
     2941 tatcattaca cgtaataaac ttttaaaact ttcaaattta gaaatttctc aagaacaagc
     3001 gagtgcttta attgtagaaa atgatgaagt taaaggcgtg aaaacaaatt tagaaaacac
     3061 atattttgcc aaaaaagtga tacttacaac aggaactttt ttaaatggac ttattcatgt
     3121 aggtgaaaac aaacttcaag caggaagggt aggggagctt gcttcggtaa atttaggaaa
     3181 ttatctgcaa actttgggtt taaaaatggg acgtttaaaa acaggaactt gcccaagagt
     3241 ggatgcaaaa agcattgatt ttagcgtgct tgaaattcaa gatggtgatg taaatcctaa
     3301 agcttttagt tttcgttcaa gaaatttcaa tcctactcaa cttccttgtt atatcgcacg
     3361 cactaataca actacacatg agattattaa gaataatttt tatcgtgccc cgctttttac
     3421 aggacagatt gaaggtgtgg ggccaaggta ttgtccttct atagaagata agatcaatcg
     3481 ttttagcgac aaagaaagcc atcatctttt tatagagcct caaactatcg atgcgacgga
     3541 gtattatatc aacggttttt ctacttcttt gccttatgag gtacaaattc aaatgctgcg
     3601 ttctgtaaag ggttttgaaa atgctaaaat aacccgtttt ggttatgcta tagaatatga
     3661 ctatatagag ccaactgaac ttaagcatac tttagaactt aaaaagatta aaaatcttta
     3721 ttgtgcagga cagattaatg gaactacagg ttatgaagag gctgcagcac aaggctttat
     3781 ggcgggaatc aatgcaagct taagcataga tatgaaagag cctttgattt taaggcgtga
     3841 tgaagcttat ataggagttt taatcgatga tttggtagta aaaggcacaa aagaacctta
     3901 tagaatgttt acttcaagag cggaatttag actgctttta agggaagaaa atgctatact
     3961 tagacttgga aaatatggct atgatttagg gcttttaagc gagcaagatt ttacttatat
     4021 acaaaatatt gcaaacaatc ttcaaaaagg acttgaattt ttactttcta aagaatttac
     4081 gcctaataac caaaataatg cttttttaga gagtttagga gaagataaaa tttcttctat
     4141 agtcaatctt caaaaaattg ttgcaagagc aagttttgat atagaaaaat taaaaaaact
     4201 tgaccctata tttgaaatca tggataatta ttctttaaga gaaattttaa atgaggcaaa
     4261 gtattatcat tacattagta tgcaaaaagc tcaagtagaa aaaatgaaaa atcttagtga
     4321 gcttaaaatt cctgaaaatt ttgattttaa aagtgtaagt ggtttgagta atgaggttgt
     4381 agaaaaactt aatcatcata aacctccaac catttttgct gcaagtcaaa tcagtggaat
     4441 cactcctgca gcgttagata ttttacaaat ttatatcaaa atgcaaaaga aaaaagctta
     4501 aatgcttgct ttttttattt ttttatctac tttagtttta cttttttggc gtccatggaa
     4561 tttacctatt tgggtatttt ctagcttggg ggcttttttt gtttttattt ttcaattggt
     4621 agattttaaa gatgtttgtt ttgttttttc tttggtttgg gatagttctt taactttggt
     4681 tgggttgatt atcctttctt ttagcttgga agctttggga ttttttgatt ttattgcgag
     4741 taaaattttg catttttcta gagagaaaaa tcaagaaaaa atttatatca gtacaaaaaa
     4801 attgatgtta tttttgttga tttttgtatt ttttctttct gcattttttg ctaacgatgg
     4861 agcgatttta atcattacac ctattattat agctttattt tcaactctta aagattgtaa
     4921 aaatcatgct tttattttaa gttctttttt acttagtctt tcttttttat gtgatgcaag
     4981 ttcaaacgct ttggttattt caaatttaac caatatcatc acagcaaatt attttaagat
     5041 agaattttta gaatttgcta aaaatatgtt tttgccaaat ttttttgttt tgctttctac
     5101 tatagttacg gtttttgtgc tttatgtgag agttttacct aaaaggcttg aatttaaatt
     5161 aatcaaaaaa gagcaaattt cattgaaatt gtttttt
//
LOCUS       DAPIWQ010000115         5162 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.116, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000115 DAPIWQ010000000
VERSION     DAPIWQ010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5162)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5162)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5162
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.116"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..97
                     /locus_tag="RJ267_001426"
     CDS             <1..97
                     /locus_tag="RJ267_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HDV7389270.1"
                     /translation="NIYNAKEYIEILWKKLDINQTILIENYDTIY"
     gene            128..358
                     /locus_tag="RJ267_001427"
     CDS             128..358
                     /locus_tag="RJ267_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDV7389271.1"
                     /translation="MEKQFYEILENILETKVDENTNLSMENCKNWTSLAHIDIIMSLE
                     EEFEIKFNKEDLSLLKSQSALLEKIQTLKAEK"
     gene            355..1248
                     /locus_tag="RJ267_001428"
     CDS             355..1248
                     /locus_tag="RJ267_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDV7389272.1"
                     /translation="MKENIEKLFQAIAQKNPIHSKYLKKIEFSQEDEEEFDKLISYYI
                     QDGISIKEQCDCYLLILNDTLEETKFFIENGAYRYSSFDEVKDKVYFNESYMKQYMIG
                     LALSSFVWITHIKVRKYFSQYLQNFTPKTTYFEIGPGHGEYFARAVKSGKFSAFYGLD
                     ISPTSCELTQKMVKQQVGGLITKCDFLCQDFFTYDFDKKADLIVIGEVLEHVEKPLEF
                     LKRSKELLSDGGEIFATIPINAPAIDHIYLFSHPDEVKDLIEKSGLKFKAYECFMAND
                     YSLEKALKFKNAITMAVVLNA"
     gene            1241..1657
                     /locus_tag="RJ267_001429"
     CDS             1241..1657
                     /locus_tag="RJ267_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDV7389273.1"
                     /translation="MLNTTLNLPLHHIGVACKNLEKERECFFKLGFYKESEFIDEKQG
                     VRGEFIIPCNEAFPQYRFELLQNLNDKGPLDSYLKNNTKMYHLAYESKNIAQDLILLE
                     QQGGICIVPIMQASYFAKLCFIMMPNRLLIELVELK"
     gene            1654..3216
                     /locus_tag="RJ267_001430"
     CDS             1654..3216
                     /locus_tag="RJ267_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDV7389274.1"
                     /translation="MNLFSPHLKRNELIKFAKELDFSKSQDLLINVHRNHAFEGVQSI
                     IAPFLHFANLRAEFNFSSYDDSLSFDNFKEASLELLWLDLTRYKNNVQNFIEERLLEL
                     RKISQNPILVLSLGEFKTDKKILNCEIFNIEKLIKEYFDEEDILDLAKEELTGSKLNN
                     KALIFLAQILGLSLIPALVKPALKALVLDLDNTLYQGILGEEGIDNLNLSPLHKTLQE
                     KIKTFKKQGFLLALASKNEEKDAKKLFEIRKDFILQWDDFDARMINWEPKGENILKIA
                     KKFNINTNAMLFIDDNIAELENTKITGVKTLLCDENILYKIKLFPNLLKLSNTKEDQI
                     RAKDIAANALREELKSLSDEEYFQNLEISLNFSKNDLQNIPRISELLGKTNQFIANYT
                     RLNQEKVAQHMQKELIVSVSMSDKLSDSGIIAIFVFSCKEGNLFIDDLCISCRALGRK
                     LETRMFFKAFELALHFFDLKNNNARLYYQKGERNMPFLSFLEQISKEFEKNSALIPFQ
                     NLNFKGLIIHEN"
     gene            3206..4267
                     /locus_tag="RJ267_001431"
     CDS             3206..4267
                     /locus_tag="RJ267_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HDV7389275.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKK
                     VIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACY
                     LHQLLNLSSKTVAFDLGQACAGYLYGLFVAHSLIQSGLGKILLICGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNEAFFELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLENLYMDGANIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMEKYANLSACSLPTLLCELDTPKEFKASLSAFGAGLSWGSA
                     VLNFKDLYTKNILIYTKEK"
     gene            4267..4488
                     /locus_tag="RJ267_001432"
     CDS             4267..4488
                     /locus_tag="RJ267_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDV7389276.1"
                     /translation="MTKTEFLEELKEAMHRDEDLNEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFTLKITAEDLKNCQKVSDLINLAKLD"
     gene            complement(4502..5104)
                     /locus_tag="RJ267_001433"
     CDS             complement(4502..5104)
                     /locus_tag="RJ267_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDV7389277.1"
                     /translation="MAKIAPWYVDGVIDNSGSALPPLNYILGREMEHSYGDYYEDFPH
                     NRIIFFLKTHWTRKENSPYFFNNENYFIRTLLNKDHLILQSQKNKNIIYVSYHSDKDP
                     LTPANFKQQTMQILKILGYDVSLNLIDENKIDGKFIKNLDHGCGIPDKALFRKELPLM
                     LEKLQKRKSFMQENSISYPCGNKVFIFKDVGDKFELVIKD"
BASE COUNT         1935 a          735 c          783 g         1709 t
ORIGIN      
        1 aaatatttac aacgctaaag aatatataga aattttatgg aaaaaattag atataaacca
       61 aacaattcta atagaaaatt atgatacaat atattaattt tcaacattct caagaaagtg
      121 gtatacaatg gaaaaacaat tttatgaaat tttagaaaat atacttgaaa ccaaagtaga
      181 tgaaaataca aatttaagca tggaaaactg caagaactgg acttctttag ctcatattga
      241 tatcatcatg agtttagaag aagaatttga aatcaaattt aacaaagaag atttaagtct
      301 cttaaaatct caaagcgctt tactagaaaa aattcaaacc ctaaaggcag aaaaatgaaa
      361 gaaaatattg aaaaattatt tcaagccatc gctcaaaaaa atcctatcca ttctaaatat
      421 cttaaaaaaa ttgaattttc acaagaagac gaagaagaat ttgataaatt aatttcttat
      481 tatattcaag atggtatcag tataaaagaa caatgcgatt gttatttatt gatccttaac
      541 gatactttag aagaaacaaa atttttcata gaaaatgggg cttatcgtta ttctagcttt
      601 gatgaagtta aggataaagt ttattttaat gaaagctata tgaaacaata catgataggc
      661 ctagctcttt cttcttttgt ttggataact catattaaag tgagaaagta tttttcacaa
      721 tatttgcaaa atttcactcc aaaaacaact tattttgaaa taggccctgg ccatggagaa
      781 tacttcgcaa gagcagttaa aagtggtaaa ttttcagcct tttatggact tgatatctct
      841 ccaacgagtt gcgaacttac tcaaaaaatg gtaaaacaac aagtaggagg attgattaca
      901 aaatgcgatt ttttatgtca agattttttt acttatgatt ttgataaaaa agctgatttg
      961 atagtaattg gagaagtgct agaacacgta gaaaaacctc ttgaatttct taaaagatct
     1021 aaagaacttc ttagcgatgg aggagaaatt tttgcaacta tccctatcaa tgctcctgct
     1081 attgatcata tttatttatt ttcccatcct gatgaagtta aagatttgat agaaaaatca
     1141 ggcttaaaat ttaaagctta tgaatgtttt atggcaaatg attatagttt ggaaaaagca
     1201 ttgaaattta aaaatgctat cactatggca gtagttttaa atgcttaata caacactcaa
     1261 tttacccctt catcatatag gcgtggcttg taaaaattta gaaaaagaaa gggaatgttt
     1321 ttttaaacta ggtttttata aagaatcaga atttatagat gaaaaacaag gggtaagagg
     1381 cgaatttatc attccttgta atgaagcatt tccacagtat agatttgaac ttttgcaaaa
     1441 tttaaacgat aaaggaccac tagatagcta tttgaaaaat aataccaaaa tgtatcattt
     1501 agcctatgaa agtaaaaata tcgcccaaga tttaattctt ttggaacaac aaggaggcat
     1561 ttgtattgtt cctattatgc aagcaagcta ttttgctaaa ctttgtttta tcatgatgcc
     1621 aaataggctt ttaatcgaac ttgtggagct aaaatgaatc ttttttcacc ccatttaaaa
     1681 cgcaatgagc ttataaaatt cgccaaagaa ttagacttta gtaaaagtca agatcttctt
     1741 attaatgtcc atagaaatca tgcttttgaa ggagtgcaaa gtatcattgc tcctttttta
     1801 cattttgcta atttaagagc tgagtttaat ttcagctctt atgatgatag cttgagtttt
     1861 gataacttta aagaagctag tttagaactt ttatggctag atttaacccg ctataaaaat
     1921 aatgtgcaaa attttataga agaaagactt ttagaactaa gaaaaatttc acaaaaccct
     1981 attttagttc ttagtttagg agaatttaaa acagataaaa aaattttaaa ttgtgaaatt
     2041 tttaacatag aaaaactcat aaaagagtat tttgatgaag aagatatttt agacttagct
     2101 aaagaagaac ttacaggctc taagcttaat aataaagcct tgattttttt agcacaaatt
     2161 ttaggactta gtctcatccc tgcacttgta aaacccgctc ttaaagctct tgtacttgat
     2221 cttgataata ccttgtatca aggaatttta ggtgaagagg gtatagataa tcttaattta
     2281 agtcctttgc acaaaacctt acaagaaaaa attaaaactt ttaaaaaaca agggttttta
     2341 cttgccctag cttcaaaaaa tgaagaaaaa gacgcaaaaa aactttttga aataaggaaa
     2401 gatttcatct tacaatggga tgattttgat gctagaatga tcaattggga gccaaaaggt
     2461 gaaaatatct taaaaattgc taaaaaattt aatataaata ctaacgctat gctttttata
     2521 gatgataata tcgccgagct tgaaaatacc aaaattacag gcgttaaaac acttttatgc
     2581 gatgaaaata tactttataa aatcaaactt tttcctaatc ttttaaaact ttcaaatacc
     2641 aaagaagatc aaattcgtgc caaagatata gcagccaatg ctttaagaga agagcttaaa
     2701 agcttaagcg atgaagaata ttttcaaaat cttgaaatca gcttaaattt tagcaaaaat
     2761 gatctgcaaa atatccctcg cattagcgaa cttttaggca aaaccaatca atttatcgct
     2821 aattacacac gcttaaatca agaaaaagtc gcacaacaca tgcaaaaaga actcattgta
     2881 agtgtgagta tgagtgataa attaagcgat agtgggatta tcgctatttt tgttttttct
     2941 tgtaaagaag gaaatttatt tatcgatgat ctttgcattt cttgtagggc tttaggtaga
     3001 aaacttgaaa ctagaatgtt ttttaaagcc tttgaactag ctttacattt ctttgatctt
     3061 aaaaacaata atgcaaggct ttattatcaa aaaggcgaaa gaaatatgcc atttttgagc
     3121 tttttagaac aaatttccaa agaatttgaa aaaaactcag cccttattcc atttcaaaat
     3181 ttaaacttca aaggacttat aatccatgaa aactagattt gataaagcta aaatttcagg
     3241 catttgcgta agcgtacctg aacataaaat ttgcattgat gatgagttag aaagcgtttt
     3301 ttcaaacgat atcaaaaccc ttaaaagaat gaaaaaagtc ataggtttaa acacgcgtta
     3361 tatttgcgat gaaaacactt gcgtaagcga tcttggaaaa cacgcagcca atacactttt
     3421 acaaggttta aatatagata aaaatagcct tgatgcactc atcgtagtaa ctcaaagtcc
     3481 tgattttttc atgccttcta cggcttgtta tttacaccaa cttttaaatt taagctccaa
     3541 aactgtagct tttgatttag ggcaagcttg tgcagggtat ttatacggct tatttgtcgc
     3601 tcattcttta atacaaagtg gcttaggtaa aattttactc atttgtggag atactttaag
     3661 caaattcatc caccctaaaa atatgaattt agctcctatt tttggtgatg gagtaagtgc
     3721 aactttaatt gaaaaaacgg attttaacga agcttttttt gagcttggaa gcgatggaaa
     3781 atattttgat aaactcatca ttccaaaagg tgcgatgaga atacctaaag cagatatttt
     3841 taacgatgat tcgctcatgc aaactgagga gtttagacaa ttagaaaacc tttacatgga
     3901 cggagcaaat attttcaata tggctttgga atgcgaacct aaaagcttta aagaaatttt
     3961 agaattttct aaagtagatg aaaaagacat tgcttttcat ctttttcatc aatccaatgc
     4021 gtatttggtt gattgcatca aagaagaatt aaaacttaat gatgataaag ttcctaattt
     4081 catcatggaa aaatacgcta atttaagcgc ttgttcacta cctaccctac tttgcgaact
     4141 agatactcca aaagaattta aagcgagttt aagtgctttt ggtgcagggc ttagctgggg
     4201 aagtgcggtg ttgaatttca aagatttata cacaaaaaat attttaattt acacaaagga
     4261 gaaataatga caaaaactga atttttagaa gagcttaaag aagctatgca tagagatgaa
     4321 gacttaaatg aagatatgct acttgatgat atagatgagt gggatagttt ggcttttgta
     4381 tctgtgatgg tgctttataa aaatcttttt actttaaaaa tcacagccga agacttgaaa
     4441 aattgtcaaa aagtaagtga tttaatcaat ttagcaaagc ttgattaaaa cctttaaggt
     4501 tttaatcttt tatcactaat tcaaatttgt cacccacatc tttaaatata aacactttat
     4561 ttccacaagg ataagagatg gaattttctt gcataaaaga ttttcttttt tgcaattttt
     4621 caagcattaa aggaagttct tttctaaata aggctttatc aggtatacca caaccatgat
     4681 ctaaattttt aataaatttt ccatcaattt tattttcatc tatcaaattt aagcttacat
     4741 catatcctaa aatttttaat atttgcatgg tttgttgttt aaaattggca ggcgttagag
     4801 gatctttatc gctatgataa ctcacataaa taatattttt atttttttga ctttgcaaaa
     4861 tcaaatgatc cttatttaac aatgttctaa taaaataatt ttcattatta aaaaaataag
     4921 gtgaattttc tttacgagtc cagtgggttt ttagaaaaaa aataatccta ttatgtggaa
     4981 aatcttcata ataatcaccg taactatgtt ccatttctct tcctaaaata taatttaaag
     5041 gtggcaaagc cgaacccgaa ttatcaatca caccatccac ataccaagga gctatctttg
     5101 ctatgagtaa agataggtat cctccataag acccccccca taaatttttg gtaaatctgc
     5161 aa
//
LOCUS       DAPIWQ010000116         5036 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.117, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000116 DAPIWQ010000000
VERSION     DAPIWQ010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5036
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.117"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(50..559)
                     /locus_tag="RJ267_001434"
     CDS             complement(50..559)
                     /locus_tag="RJ267_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HDV7389278.1"
                     /translation="MHFTIFHIIAFIILLICFALICILIFLKVKQKEMALISYTIATI
                     FTALLIYSIFLTINQFTTQADLSKLTYTRDLRHESVIVSGKVQNLTKFKIKKCYLILS
                     ILNQQQVGGEIFNDKNIRNAKMQNTSVSYTIEIIDTLPGNTYKEFRASVPFPPTFNNP
                     EFYHTLKCI"
     gene            complement(559..1089)
                     /locus_tag="RJ267_001435"
     CDS             complement(559..1089)
                     /locus_tag="RJ267_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HDV7389279.1"
                     /translation="MEKLREIVLFYTTHLYLVDYMLILLVFFLFTCVLLLCVFLRHRP
                     IAALFIIAFDIIICFLVYIYGYKLIDNEVRTRKIAITDQKMIQSSNDLIVDFNITNNS
                     KNNFKECKITAKIFADKIPNDNIIEEYKKKFIPFRQKSREIKDLKKNATQVQRIAFEN
                     FNYENNYTIRLVSECF"
     gene            complement(1101..2189)
                     /locus_tag="RJ267_001436"
     CDS             complement(1101..2189)
                     /locus_tag="RJ267_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HDV7389280.1"
                     /translation="MPADLNDYFNKKNGNSNNNGNNNRQNFNFKAPEFNFKGFGKFSP
                     FVYGVIIIILFLIVAKPFMVINSGEMGIKSTTGKYDPNPLEPGLHFFLPFVQKITIID
                     TRVRQINYASIEGSNENLSSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQT
                     IATWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNTIATQIEEGIRKTIEAQPNE
                     PVELRAVQLREIILPSKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEAN
                     ATIISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAK
                     IFLTPGGAVPNIWVDTKDAKKQSAANMN"
     gene            complement(2202..3116)
                     /gene="ilvE"
                     /locus_tag="RJ267_001437"
     CDS             complement(2202..3116)
                     /gene="ilvE"
                     /locus_tag="RJ267_001437"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HDV7389281.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKELENAQIELLKANNFKSNVYIRPLIFL
                     GDGVMGLYHIKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFARNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQDTVLKIAHDLGITVLRQRISRDEVYTADEAFFTGTAAEITPINNIDARIIGNGLRG
                     SVTKKLQDAYFDVVYGRNEKYASMLTYI"
     gene            3293..3499
                     /locus_tag="RJ267_001438"
     CDS             3293..3499
                     /locus_tag="RJ267_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HDV7389282.1"
                     /translation="MPLVNIKLAKPSLSKEQKAELIADITELLSTKYNKSKERVVVVL
                     EDVENYDIGFGGESVEAIKAKASK"
     gene            3496..3951
                     /gene="bcp"
                     /locus_tag="RJ267_001439"
     CDS             3496..3951
                     /gene="bcp"
                     /locus_tag="RJ267_001439"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HDV7389283.1"
                     /translation="MSLNIGDKAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTPG
                     CTTEACDFSANYDKFGGKNAVIIGISPDSVASHEKFISKFDLKHILLSDSEKEVAKAY
                     GALGLKKNYGKEYEGLIRSTFVIDETGKIAQIYSNVRVKDHALKVLESL"
     gene            3951..>5036
                     /locus_tag="RJ267_001440"
     CDS             3951..>5036
                     /locus_tag="RJ267_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HDV7389284.1"
                     /translation="MLVHICCSVDSHYFIEELRKTYPDEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECEPYGVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSSVNKQILPVSIEARIALYKKVVLWEKKG
                     IKFEILREKFLNYRLLSALIKLDKKPVKSHILFYSHFKNAYTRFSLDEENLKQNLKEG
                     FYRSTKDEIVLVEFWRFNAFFKNKWKNFEDFLKKPLSVQAEIKWRNKLFGTYNLSPII
                     ILENILPSRYEVIAKSEIYHDNQEVLVK"
BASE COUNT         1712 a          687 c          823 g         1814 t
ORIGIN      
        1 atgtgaataa ttaatgtatt ttagaatttt tgctagttga tttcttgaat caaatacatt
       61 ttaaggtgtg ataaaattca ggattattaa aagttggagg aaaaggaacg ctagctctaa
      121 attctttata ggtattaccc gggagtgtgt ctatgatttc tatagtataa gaaacacttg
      181 tattttgcat tttagcgtta cggatatttt tatcattgaa aatttcacct cctacttgtt
      241 gttggtttaa tatgctaagt atcaaatagc attttttgat tttaaattta gtaagatttt
      301 gaacttttcc acttactata acgctttcat gtcttagatc tcttgtgtag gttagtttgc
      361 taagatcggc ttgagtggtg aattgattga ttgttagaaa aatagaatat atcaaaagtg
      421 cggtaaaaat agtagctatg gtataagaaa tcaaagccat ttctttctgt ttgactttta
      481 gaaagattaa aatacaaatc aaggcaaagc aaataagtaa aatgataaaa gctataatat
      541 gaaaaatcgt aaaatgcatt aaaaacactc cgaaactaag cgtatggtat agttattttc
      601 atagttaaaa ttttcaaaag caattctttg aacttgggtt gcgtttttct ttagatcttt
      661 aatttctcta cttttttgtc taaaagggat aaatttcttt ttatattctt ctatgatatt
      721 atcattaggt attttatctg caaaaatttt agctgtaatt ttacattctt taaaattatt
      781 ttttgaatta tttgtaatgt taaaatcaac aattaaatca tttgagcttt gtatcatttt
      841 ttgatctgta atagcgattt ttcgagttct tacttcattg tctattagtt tatacccata
      901 gatataaact aaaaaacaaa taataatatc aaatgcaata ataaaaagtg ctgctatagg
      961 tctatggcgt aaaaatacac aaagaagtaa aacacaagtg aagagaaaaa aaactaataa
     1021 aatcagcata taatctacta aatataaatg agtagtgtaa aaaagcacga tttctcttag
     1081 tttctccact tgtgtatcct ttagttcatg ttggcagcac tttgcttttt agcatctttg
     1141 gtatcaaccc aaatgtttgg cactgctcca cctggagtta agaaaatttt agcatcttga
     1201 ttgactttta aagcttcatt aaattctttt tgagtttcaa tttgttttaa atttagcaaa
     1261 ggggtgttta ggctgtttgc gatttctttg ttagaataag cttgtgcatc tgcttctatt
     1321 ttaacagcca tagctttacc tttggcgctg attatggttg catttgcttc cccttcagct
     1381 aaagcagctt tttttaaggc ttcttgatta gctctttcta cttcatattt agttctttca
     1441 gcctcttgtt ttgcaatttg cacgcgttcg atttgttctt ttacttttga aggtaaaata
     1501 atttctctaa gttgtacagc gcgaagttct acaggttcat ttggttgggc ttctatggtt
     1561 tttcttatac cttcttctat ttgagtggct attgtattac gattagtagg aagttcttcg
     1621 gctgtgtatt ttcctacaac acttcgcact acatcacgaa caactggatc gataatttta
     1681 ttttcccaat ttaagctcca agtagctata gtttgaggaa cttgcaaagg atttaagcgg
     1741 tattgtactg taacatcaat agatacaggc aatccacgag agtcaagtac agaaatacta
     1801 tttttattaa taacacctga acctgaagat aaattttcat tacttccctc tatagaagca
     1861 tagttgattt gtcttactct agtatcgatt atggttattt tttgtacaaa aggtaagaaa
     1921 aagtgaagtc ctggttctaa tggatttggg tcatatttac ctgttgttga tttaatcccc
     1981 atttccccag aatttatcac cataaaaggt tttgcaacga ttaaaaataa gataataata
     2041 atcaccccat aaacaaatgg agagaatttt ccaaaacctt taaaattaaa ttctggtgct
     2101 ttgaaattga aattttgacg gttgttgttt ccgttattgt tagaatttcc atttttttta
     2161 ttgaaataat cattcaaatc agctggcatt tatttccttt tttaaatata agttagcata
     2221 gatgcgtatt tttcattgcg tccataaact acatcaaaat aagcatcttg aagtttttta
     2281 gttacagatc ctcttaaacc atttcctatt attcttgcat caatattatt aataggtgtg
     2341 atttcagcgg ctgttccggt aaaaaatgct tcatcagcag tataaacttc atctcttgaa
     2401 attctttggc gaagcacagt aataccaaga tcatgagcga ttttaagcac tgtatcttga
     2461 gtaatgcttt ttaaagaaaa atcatttgga ggtgtgatta aaaccccatc ttttacaata
     2521 aagaaacatt ctcctgttcc ttctgcgata aaaccttctt catcaagcat caaagcttct
     2581 tcatagcctg cttcaatagc ttcaaatttt gcaatttgag agttaagata attcgcactt
     2641 gctttagctt ttcccatgca tgatttaaca ctatttcttg caaaagacga aatttttact
     2701 tttatacctt tttctaaacc ttcttctcca aggtaagcac cccattccca agctgcaatc
     2761 ccaactctta caggagcttt tatatgataa agtcccataa ctccatcgcc taagaaaatc
     2821 aaagggcgga tatagacatt gcttttaaaa ttgtttgctt ttaagagttc aatttgtgca
     2881 ttttcaagct ctttttgaga aaaaggacaa tttaaaagag taatttttgc agactctaaa
     2941 agtcttttgg tgtgatcttc aagtctgaaa attgctaagc ctttatctgt tttataggct
     3001 ctagttcctt caaaaacagc attgccataa tgcaaagaat gggttaaaaa gtgcaaagtt
     3061 gcatctttaa aatcaactaa ttttccatcc atccaaattt tatctgctga gatcattttt
     3121 ttacctttta tagttgttta tttcttaaaa aatattattt taagaataaa tcgggatttt
     3181 atcaaaaata tactaataat aagcttttat taaattaagc ttttttgtta aaaaaaatat
     3241 taggtatttt ttgaaataat tatgaaaaat tatcgttaaa aaaggagaaa ttatgccatt
     3301 agtaaatatc aaattagcaa agccgtcttt aagcaaggag caaaaagcgg aacttatagc
     3361 tgatattacc gaacttttaa gcacgaaata taataaaagt aaagaaagag ttgttgtggt
     3421 tttagaagat gtggaaaatt atgacatagg ctttggcgga gaaagtgtag aagctatcaa
     3481 agcaaaggca agtaaatgag tttaaatata ggagataagg cacctcaatt tgagctttta
     3541 aatcaagatg gggtaaaaat agcattaaaa gattttattg gcaaaaaggt gattttgtat
     3601 ttttatccaa aagataatac cccaggttgc actacagaag cttgtgattt tagtgcaaat
     3661 tatgataaat ttggtggtaa aaatgcggtg attattggta tcagtcctga tagcgtggca
     3721 agtcatgaaa aatttatctc taaatttgat ttaaaacata ttttacttag cgatagtgaa
     3781 aaagaagttg ctaaagctta tggagctttg gggcttaaga aaaattacgg aaaagaatac
     3841 gaaggtctta ttcgttctac ttttgttatc gatgaaacag gtaagattgc tcaaatttat
     3901 agtaatgttc gtgtaaaaga tcatgcttta aaagtgcttg aaagtcttta atgctagtac
     3961 atatttgttg tagcgtggat agtcattatt ttattgaaga acttagaaag acttatcctg
     4021 atgaaaaaat tataggatac ttttatgatc caaatatcca tcctttaagc gaatacgaac
     4081 taagattttt agatgtaaaa agatcttgtg ataaacttgg tattaagctt tataaaggtg
     4141 agtatgagta tgaaaaatgg cttaatgctg tgcgtggtta tgaagatgag cctgaaaagg
     4201 gtgcaaggtg tgaaatttgc tttgatgtaa gaatgggatc tagtgttaaa tttgctgcta
     4261 aaataggaga aaaaaagctt actactacgc ttttaaccag ccctaaaaaa gatttagaac
     4321 agttaaaaaa tgctttacaa aaagaatgtg agccttatgg agtagagttt ttagctcctg
     4381 attttcgtaa aaatggcggc actcaaagac agtttgcttt agcaaaaaag gaaatgcttt
     4441 atcatcaaaa ctattgcggc tgcatttatg ggcttaaaaa acaaaaacaa gataagaatt
     4501 ttattgatga attaatgtct tctgtaaata agcaaatttt acctgtaagt atagaagcaa
     4561 gaatagctct ttataaaaaa gtagttttat gggaaaaaaa aggtataaaa tttgaaattt
     4621 taagagagaa atttttaaat tatcgtcttt taagtgcttt gataaaatta gataaaaagc
     4681 ccgttaaatc tcatatttta ttttattcgc attttaaaaa cgcttataca agattttctt
     4741 tggatgagga aaatttaaaa caaaatttaa aagaaggctt ttatagaagt actaaagatg
     4801 aaatagtttt agtggaattt tggcgtttta atgcattttt taaaaacaaa tggaaaaatt
     4861 ttgaagattt tttaaaaaaa cctttaagtg ttcaagcaga aattaaatgg cgtaataaat
     4921 tgtttggaac ttataatctt agtcctatta tcatccttga aaatatttta ccttcaagat
     4981 atgaagtgat agcaaaaagt gaaatttatc atgataatca agaggtgctt gtaaaa
//
LOCUS       DAPIWQ010000117         5001 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.118, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000117 DAPIWQ010000000
VERSION     DAPIWQ010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5001)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5001)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5001
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.118"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            287..781
                     /locus_tag="RJ267_001441"
     CDS             287..781
                     /locus_tag="RJ267_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389285.1"
                     /translation="MKEVKGGYITYLKRLSDNEVIAFAKPDWNLELTLFQDSNGDQYY
                     WNREGLVRFGGMCGIETTNCLVNGKHSYINQKRLWETMSIVGDDPYRNFLGYTVKRNI
                     GISNLGKRFVYFSYGVAVINEQSGSWYRVKSSPVLNNYRVVKEISSNYKDFLERYLGG
                     YSIK"
     gene            795..1583
                     /locus_tag="RJ267_001442"
     CDS             795..1583
                     /locus_tag="RJ267_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389286.1"
                     /translation="MINSLNSNLNYDYNTSNFKQDKNIDFKINKHGVAVITGEGALPY
                     RGKKFEYNPKIFGLDESISKKDMQEFNNFMKSNALKDPNKIEKSPLKDFNPAYTKWDP
                     TTEKMMLGFFVSYSKMFHLGYDIIKKADEFYKEFDALISKDLSLNEFKTKYIDFKQRH
                     DEFVKEYEMAMGDKMLLSSDDEIITQQSEKPFKAIQGESKNKETYKDDSTRNELVKKL
                     LEGKFSTSKELELLFGMKFSDDDAGEFNKILSLNSTPKSIDIKA"
     gene            1704..2309
                     /locus_tag="RJ267_001443"
     CDS             1704..2309
                     /locus_tag="RJ267_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HDV7389287.1"
                     /translation="MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILA
                     QKCAQNGFCVISGGGGGIMRAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI"
     gene            2309..3325
                     /gene="mnmA"
                     /locus_tag="RJ267_001444"
     CDS             2309..3325
                     /gene="mnmA"
                     /locus_tag="RJ267_001444"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HDV7389288.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFI
                     DAKELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHDKVIAS
                     GFIE"
     gene            complement(3353..3598)
                     /locus_tag="RJ267_001445"
     CDS             complement(3353..3598)
                     /locus_tag="RJ267_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDV7389289.1"
                     /translation="MFFIVQLALGAPPLFYAFIMIASGNVMMALTHYAIGTAPVIFGT
                     GCVTLKKWWSIGFVISIVDIVVMIAVGLFWWKILGFY"
     gene            complement(3721..3984)
                     /locus_tag="RJ267_001446"
     CDS             complement(3721..3984)
                     /locus_tag="RJ267_001446"
                     /inference="COORDINATES: protein motif:HMM:NF013132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDV7389290.1"
                     /translation="MKKSYSVFLSRFYFYGLELWACFFGISLDATSVALLGLSLVLIS
                     GVLTFGEVLAEKAAWNTLVWFSALVMMATLFGKLGVTQFLAEA"
     gene            complement(3899..4123)
                     /locus_tag="RJ267_001447"
     CDS             complement(3899..4123)
                     /locus_tag="RJ267_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDV7389291.1"
                     /translation="MFLPGIAAMLLMPLMLYFLSPLEIKSTPNASTFAKDKLKELVKM
                     KNSEKIILSVFVSLLLLWAGALGLFFWNFS"
     gene            complement(4177..4575)
                     /locus_tag="RJ267_001448"
     CDS             complement(4177..4575)
                     /locus_tag="RJ267_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDV7389292.1"
                     /translation="MKDALSGFSNSLIWFIVISIIVARGVIKTGLGEHLAYHFISILG
                     KKTLGIAYSIAFCETILAPVTPSNTARAGAIINPIVQVIARSFKSTPEDGTQNKIGTY
                     LSLVNYQEPILFHQLCLLQLQLQILWWLIL"
     gene            complement(4736..4871)
                     /locus_tag="RJ267_001449"
                     /pseudo
     CDS             complement(4736..4871)
                     /locus_tag="RJ267_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857729.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:sulfate symporter"
BASE COUNT         1915 a          742 c          837 g         1507 t
ORIGIN      
        1 tttattacaa aagcaaacaa accgagaata aaattttaag tatttaaaga aaattcactt
       61 aactttcaaa gcaagattaa acttttgcta gaataagtcg atagtagttt taaagaactt
      121 acaaaaagaa tttatgaaag gattttcaat aaaaaagatt tttgctttat tagctttaac
      181 ttctttactg actagttctg tttttgctga ggatttttta gctaaactca caaaaggtgc
      241 cttaagcgat acaagcccgg gtgtcaaaga actcagcctt gaagagatga aagaagtgaa
      301 gggtgggtat ataacctatt taaaacgact tagtgataat gaagttatag cctttgccaa
      361 acctgattgg aatttggaat taactttatt tcaagatagt aacggagatc aatattattg
      421 gaatagagaa ggacttgttc gatttggtgg aatgtgcggt atagaaacta caaattgttt
      481 ggttaatggt aagcattcct atatcaatca aaaaagactt tgggaaacta tgagtatagt
      541 gggcgatgac ccttatcgta actttcttgg atatactgtg aaaagaaata ttggtatttc
      601 taatttagga aaaagatttg tgtatttttc ttatggagtg gctgtaatca acgaacaatc
      661 aggttcttgg tatagagtaa aatcaagtcc tgttttgaat aattacagag tagttaagga
      721 aatcagttca aactataaag actttttaga aagatatctt ggtgggtatt ctatcaagta
      781 aagaggaaaa actaatgata aatagtctaa actcaaattt aaactatgat tataacactt
      841 caaattttaa acaagataaa aatattgatt ttaaaatcaa caaacacgga gtagccgtta
      901 taacaggaga aggtgctttg ccttatcgtg gaaaaaaatt tgagtataat cctaaaatat
      961 tcggacttga tgaaagtatt agcaaaaaag atatgcaaga atttaacaac tttatgaagt
     1021 caaatgcttt aaaagacccc aataaaatag aaaaatcccc tttaaaagat tttaatcctg
     1081 cttatacaaa atgggaccca actacggaga aaatgatgtt aggttttttt gtttcttatt
     1141 ctaagatgtt tcatttgggc tacgacatca tcaaaaaagc cgatgaattt tataaagaat
     1201 ttgacgcact tataagtaaa gatttaagct taaatgagtt taaaactaaa tacatagatt
     1261 ttaagcaaag acacgatgaa tttgtgaaag aatacgaaat ggctatgggt gataaaatgt
     1321 tgctttctag tgatgatgaa attatcactc aacaaagtga aaaacccttc aaagccattc
     1381 aaggcgaaag taaaaacaaa gaaacttaca aagatgatag cacaagaaac gaacttgtaa
     1441 aaaaactatt agaaggtaaa tttagcacta gtaaagaatt agaacttctt tttggtatga
     1501 aatttagtga tgatgatgca ggagaattta ataaaatcct ttctttaaat tctacaccaa
     1561 aaagtataga tattaaagct taaggattta aaagtcttta aattcctaat cttaataaaa
     1621 taaacctatt aaaacttata taataaagaa cttattataa atttttagct agaatggaat
     1681 ttattttaac taaaggttga aaaatgaatg aaaaaataag ccaagattta gaaaaatttg
     1741 ctaacatacc aaacctaaaa aatgccgtaa ctttttttgg ttcagcaaga cttaaagaag
     1801 ataattttta ttatcagcag gctaaaattt tggcacaaaa atgtgctcaa aatggttttt
     1861 gtgtgataag tggtggaggt ggtggtatta tgcgtgcagc caacgaaggt gctttttcac
     1921 aaaaaaataa tacaaattca atgagttctg tagggtttaa tatattttta cctcacgagc
     1981 aaaaacttaa tgattttgta gaatataata ttacttttga gagcttagcc atacgcaaaa
     2041 tggctcttat tgaaaagagt ctagcttttg tgatcttccc aggcggcttt ggaacacttg
     2101 atgaattgtg tgaaattctt acattaaaac aattagaatt taaaaaagat gttcctatta
     2161 ttttgtttgg gagtgaattt tggcgaggtt ttgatgagtt cgtcagaaat tctttactca
     2221 aacttgaagt gatttctaaa ggagatgagt taaagtataa aatcactgac gacttggatt
     2281 ttataattaa tactttaaag gaaatttaat gaaaattcta gtcgctatga gcggtggagt
     2341 tgatagtaca gtcactgctt ataaacttaa aaatttaggt catgaagtta taggttgtta
     2401 tatgaaactt catggcaaac caaattatca cgaagaaaat atcaaaaaag tagaaaaagt
     2461 tgcaaacttt ttgcaaattc cttatcatat tttagactta caagaagatt ttaaaaacaa
     2521 agtttacatg ccttttgtgg atacttataa agagggtaaa acaccaaatc cttgcgcttt
     2581 atgtaaccgt tttatcaaac ttggaaaact tttagaattt gctaaaagtt taggttgtga
     2641 aaaacttgcc acagggcatt atgcaagact tgaaaacaac ttaataaaaa ccgcagtaga
     2701 tgaaagcaag gatcaaagct attttttggc cagtgcagat aaagaagctt taaaatatct
     2761 tatttttccg ctaggcgaaa tgaaaaaaga agatgtgaaa aaatttgctt ccactataga
     2821 ggttttaaaa tcttttgcca cccaaaagga aagttctgaa atttgctttg ttgaagatac
     2881 ttatgtgcaa gttttagatc agtttatgga tacaaaaatt cctggagaag tattagatag
     2941 tagcggaaaa gtagtaggca aacatgaggg ctatatgcac tataccatag gcaaaagaag
     3001 aggctttgaa gtgcgtggag cgcatgagcc gcattttgtt ttaaaaatca atcctaagca
     3061 aaaccaaatc atcgtaggaa ccaaagaaga acttaaaatc agtgaattta acctaaaaaa
     3121 tatcaatctt tttatagacg ctaaagagct tgattgcgaa gtaaaaatcc gctatcgttc
     3181 aaaatccaca ccttgcaagg tagaaattta tgaagataaa agtgcaaaaa tcatcctaaa
     3241 agatcctgtt tatgggcttg ctagcggaca aatggcagtc ttttatgatc atgataaagt
     3301 catagcaagt ggttttatag aataatttct aggaattaat tcctagaaat tattaataaa
     3361 atcctaaaat tttccaccaa aaaagcccaa cagctatcat caccactata tcaactatgg
     3421 aaatcacaaa acctatactc caccattttt taagagttac acagcctgtt ccaaaaataa
     3481 caggagctgt tcctattgca tagtgagtta atgccatcat aacattacct gaagctatca
     3541 taataaaagc ataaaaaagt ggtggtgctc ctaaggcaag ctgcactata aaaaacaaaa
     3601 aacattgctg atatatgagc tgtaatggaa gcaaagaaat agtgtgtata taaaaaaagc
     3661 aaggcttaaa aatatcataa tagaaatttc cccaagtccc atagcagaag caaattcacc
     3721 ttaagcttca gctaaaaact gtgtaacgcc aagtttgcca aataaagttg ccatcattac
     3781 aagagctgaa aaccatacta aagtattcca agcagctttt tcagccaaaa cttccccaaa
     3841 agttaaaact ccactaatca acaccaaaga caacccaagc aaagccacac tagtcgcatc
     3901 aagagaaatt ccaaaaaaac aagcccaaag ctccagccca taaaagtaaa agcgagacaa
     3961 aaacactgag tatgattttt tcactatttt tcatttttac aagttctttt aatttatctt
     4021 tagcaaaagt agaagcatta ggcgtggatt taatttctag cggagagaga aaataaagca
     4081 tcaaaggcat caaaagcata gcagctatac caggtaaaaa catccctaaa gcctattacc
     4141 cccaagttaa atacacttct aaatttgtag cttgtgctat aagatcaacc accaaaggat
     4201 ttggagctgt agctgtaata aacatagctg atgaaatagg attggctctt gataatttac
     4261 caaagaaaga taagtgccta ttttattttg tgttccatct tcaggagtgg atttaaaact
     4321 tcttgcaata acttgaacta taggatttat gatagcccct gctcttgcag tatttgaagg
     4381 agtaactgga gctaaaatag tttcacaaaa agctatagaa taagcaatac ctaaggtttt
     4441 tttaccaaga atactgataa aatgataagc caaatgctct ccaagtcctg ttttaataac
     4501 tccacgagcc acaataatag aaatcactat aaaccaaata agagaatttg aaaaaccact
     4561 taaagcatct tttatgcccg ttttagattt taaatttgat atagcagtat ttaccttttc
     4621 atcttatgct cttttgatat aaaaaatcaa gtgctgaagt atttaaagga aattttagtc
     4681 tcatcaataa gttgttgcgt agaagttttc gaagtagctt tggtgtaaat tttacttaga
     4741 ttttcaattg ggtagtggta atacccacta agagctacta tggcaatagc tataaaaggc
     4801 attacttgta aaatcactgc cataatcaca gcaataaaaa gcccaagaaa atgccaagaa
     4861 ttatcttcca aacctacagg agtaggtaca agccaaaaca cagctgcaat taaaatacac
     4921 agcaccaaca agggaatttt ctttctatcc attgtttatc ctttgatatt ggtaatgtaa
     4981 tttacaatgc ttaaattcta g
//
LOCUS       DAPIWQ010000118         4990 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.119, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000118 DAPIWQ010000000
VERSION     DAPIWQ010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4990)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4990)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4990
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.119"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            42..356
                     /locus_tag="RJ267_001450"
     CDS             42..356
                     /locus_tag="RJ267_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389293.1"
                     /translation="MKKILTSALALGAMTLIVDCGDGDLVELKNNGNDQAMFDLGNQE
                     IMKKYPNYKLYDYTSVRTISDINNPEGKIKEMKRDLEIDKTPYSNYVFLLNPNDKKTI
                     KL"
     gene            complement(514..1611)
                     /gene="prfB"
                     /locus_tag="RJ267_001451"
     CDS             complement(514..1611)
                     /gene="prfB"
                     /locus_tag="RJ267_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HDV7389294.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASILYRMYLRFCEREGF
                     KVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWGHQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKAE"
     gene            1685..3004
                     /gene="rimO"
                     /locus_tag="RJ267_001452"
     CDS             1685..3004
                     /gene="rimO"
                     /locus_tag="RJ267_001452"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HDV7389295.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGHLSAYELCDEPSKADVLIVNT
                     CGFIDSAKKESINAILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQSENSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGI
                     RAARILYLYPTSASEALIKRIIASEIFINYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSAPNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFD
                     MEQVPFKVINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGKSSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEILQNLDKKLLAKALRKVDAN"
     gene            2994..3959
                     /gene="tilS"
                     /locus_tag="RJ267_001453"
     CDS             2994..3959
                     /gene="tilS"
                     /locus_tag="RJ267_001453"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HDV7389296.1"
                     /translation="MQIKDEILSLLKRGKNLLAFSYGSDSSVLFYLLMQEKIDFDLVM
                     INYKTRKNSDLEELKAKELALKFHKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQ
                     GYDHLILAHHLNDQFEWFLMQLSRGAGLAEILGMQECEKRSNYTLLRPLLFISKDEIS
                     SFLKEKDIFYFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKRSFSYLDEDRKKLYD
                     FENIKEIQGLLICPKNESLIARAVKMKGLLLSTAQRKELLKGDCVLGGKIALAYKNEQ
                     AIVFEYETCQKLPKNFKEECRIAKIPRLLRAYLYNHKIDISSLSF"
     gene            complement(3942..4202)
                     /locus_tag="RJ267_001454"
                     /pseudo
     CDS             complement(3942..4202)
                     /locus_tag="RJ267_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            4184..4810
                     /locus_tag="RJ267_001455"
                     /pseudo
     CDS             4184..4810
                     /locus_tag="RJ267_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516652.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
     gene            4807..>4990
                     /locus_tag="RJ267_001456"
     CDS             4807..>4990
                     /locus_tag="RJ267_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389297.1"
                     /translation="MKLKLNLENCYGIGKLQKEFDFSDKNVLLFYAQNGTFKTSFAKT
                     FKNIKDDKQIKDEIFPE"
BASE COUNT         1784 a          676 c          860 g         1670 t
ORIGIN      
        1 atagttatat taatttaatt ttaaaactag gagcaaaaat aatgaaaaag attttaacaa
       61 gtgctttggc tttaggagct atgactttga ttgtagattg tggcgatggc gatttagtcg
      121 agttaaaaaa caatggcaac gatcaagcta tgtttgattt aggtaatcaa gagattatga
      181 aaaaatatcc aaattataaa ctttatgatt atacttcagt cagaacaatt agtgatatta
      241 acaatccaga aggcaaaatt aaagaaatga agcgtgattt agaaatagat aaaactccat
      301 actcaaacta tgttttctta ttaaatccaa acgataaaaa gactataaag ttgtgagtgt
      361 ttattgcgat aaagatttta agaaaagagt ttattattct gtgaatgatg ctcttaggtt
      421 ttatgcaaga taataaaaca agcgggaaaa tcccgctatc tttctaattt ttttataccg
      481 acattttgca gaaattactt atttttaagc ctgttactcc gcttttaaag caatcaaaac
      541 gccttctatc atttttttga tatccccatc aaggatatta tccacttgag aaaaagcttc
      601 tccgctgcga ttgtctttga cttgctgata agggaaaagc acataagaac ggatttgatg
      661 cccccaacct atctcgcttt tttctccagt attagcacta tcttgttgtt tcatgagttc
      721 aagttcataa aggcgagatt ttagcatttt aaaagcggtg gctttgtttt tgtgctgact
      781 tctgtcattt tggcattgta cgactatgcc ggttggaaaa tgcgtgattc tcacagccga
      841 ttctgtttta ttgacatgtt gtccgcctgc accgcttgct ctgtaataat ctattcttat
      901 gtctttttct tcgatttcaa tttctatatc atcatcaagt tcagggctta ccataacact
      961 tgaaaagctt gtatgacggc gtcctgcact atcaaaagga gaagttctta ccaaacgatg
     1021 gataccattt tcagctttta aataaccata agcattttct cctttaacta aaaagctcac
     1081 atctttaagt cctgcttctt cgccttcttg aaagtctaaa gtttcgactt taaaaccttc
     1141 tctttcacaa aatcttaaat acattctata aagtatgctt gcccagtcat tactttccgt
     1201 tccacctgca cctgggtgaa tggaaacaat ggcattttta ccatcatttt ccccgcttaa
     1261 aagcatggaa atttcaagac ttgtgatggt atcttcaagt tttggtgcgt cattaaataa
     1321 agcttcaagt gtttctgtat cgttttcgct attggccaga tcgaaaagtt cgcttgcgtc
     1381 atttagagca ttaaaagcat tttcatagtt tttaagtaga ttggtgattt tagttttttc
     1441 tttacctatg attcctgctt gtttaacatc actccaaaaa gaaggagaat tttcaagctc
     1501 ttcgatttct ttaagccttg tttggatatt ttcaggcttg atgatggagg ctatgttgcc
     1561 gactttgttt tttaaagttt ttaaaagttc gctaaattcg taattatcca taaaatttct
     1621 ttgctataat tatattttta aagtcaaaaa ttatatcaaa agaaaacttt aatataggaa
     1681 aaaaatgtca aaactttatc ttatgtcttt aggttgtaat aaaaatttag tcgatagtga
     1741 gatcatgcta gggcacctta gtgcttatga actttgcgat gaaccaagca aagctgatgt
     1801 tttaatcgta aatacttgtg gttttatcga tagtgcaaaa aaagaaagta ttaatgcgat
     1861 tttggatttg cacgaacaaa gaaaaaaaga ttctcttttg gtggttacgg gttgtttgat
     1921 gcagcgttac cgcgaagaac ttatgaaaga acttcctgag gttgatcttt tcacaggtgt
     1981 gggtgattat gaaagaatcg atgaaatgat acttaaaaaa acaaatttat tttcaaattc
     2041 gacttatttg caaagtgaaa attctaaacg tattatcaca ggttcaaatt cccatgcttt
     2101 tataaaaatc gccgaaggtt gtaatcaaaa atgctctttt tgtgccatcc caagttttaa
     2161 aggcaagtta aaatctcgtg agataagtag cattatagct gagcttaaag atttggtagc
     2221 tagaggttat aaggactttt cttttattgc acaagatacg agttcttatt tgtttgataa
     2281 gggtgaaaaa gatgggctta tacgcttaat cgatgaggtg gaaaaaatca aaggcataag
     2341 agcggctaga attttatatc tttatcctac gagtgcgagt gaagctttga ttaaacgcat
     2401 tatagcttct gaaattttta taaattattt tgatatgcct ttacaacaca taagtgataa
     2461 tatgcttaaa atcatgaagc gtggggcaaa tagcacaaga cttaaagaaa tgctaaattt
     2521 aatgaaaagt gcgccaaata gttttttacg cacgggcttt atcgtaggac atccaggtga
     2581 gagtgaggcg gattttgaag agctttgtga gtttgttaaa gattttggtt ttgataggat
     2641 aagcgttttt gcgtattcta aggaagaaga tacggctgct tttgatatgg agcaagtgcc
     2701 ttttaaagtg atcaataaaa ggcttaaaat catagaaaaa attgttgatg aagtcataga
     2761 aaaaagtttt gaaaaagaag tagggcaaaa gcgtttagta gtttgcacag gaaaaagtag
     2821 cgagggagag tttttcatcg cagctaaaga tttaagatgg gatagagaga ttgatgggga
     2881 aattcttatc aatgaaagtg aatgtggaaa tttagaaatg gggcaaattt atgaatgtga
     2941 aattttacaa aaccttgata aaaagctcct tgctaaggct ttaagaaaag tagatgcaaa
     3001 ttaaagatga aattttatcc cttttaaaaa ggggtaaaaa tttactcgct ttttcttatg
     3061 gaagtgattc tagtgtgctt ttttatcttt taatgcaaga aaagatcgac tttgatcttg
     3121 tgatgataaa ttacaaaact agaaaaaata gtgatttaga agagttaaaa gccaaagaac
     3181 ttgctttaaa atttcataaa aaaattttca taaaacacgc tcctaaattt caaagtaact
     3241 ttgaaaaaaa agccagagat tttcgctatg atttttttga aaaaatttgt cttgagcaag
     3301 gttatgacca tcttatctta gcccatcatt taaacgatca atttgaatgg tttttgatgc
     3361 aactttcacg aggcgcaggt ttggctgaaa ttttaggtat gcaagagtgt gaaaaacgct
     3421 caaattatac acttttacgc cctttactct ttataagtaa agatgaaatt tcatcttttt
     3481 taaaagaaaa agatattttt tatttccatg atgaaagtaa tgaaaatgaa aaatatttta
     3541 gaaattatat aagaaaaaat ttctctaatg cctttgtgag tgaatttcat cagggtttaa
     3601 aaagaagttt ttcttatctt gatgaagaca ggaaaaaact ttatgatttt gaaaatatca
     3661 aagaaattca aggacttctt atttgcccta aaaatgaaag cttgattgct agagcggtga
     3721 aaatgaaagg tttgctttta agcacggcac aaagaaaaga gcttttaaag ggtgattgtg
     3781 ttttaggtgg taaaatagca cttgcatata aaaacgaaca agctattgtt tttgagtatg
     3841 aaacttgtca aaaattacct aaaaatttca aagaagagtg tagaatagct aaaattccaa
     3901 gacttttaag agcttattta tataatcata aaatcgatat ttcaagcctt agcttttagt
     3961 tttaaaattc tttgatagct taaatgtgtg agaaaaatca caaaaaatac ttgcaaaaaa
     4021 agtcctaaaa gtggtactga tgagagtaga taaaaacaaa gagtgctaaa tttaaactct
     4081 aaaggcgaaa aatcggaatg aaaattttta aaactttctt tgtctaaaat cgtgcttgta
     4141 acatcaatca ttaaaagttt gtgaaagaga taataaaaag caagataata tacaaaaata
     4201 ttttgtaaaa agatataatt atttttgggt tatttataca aattcatctt ttaaaaatcc
     4261 aaattctatg gataattatc caaatttgaa aaaacattta gataaatttc aaaatgttat
     4321 cacttctgat aataaacctt atggtttgca ccgagcaaga gatgaaaaat tttttacagg
     4381 aagtcctaga atagtagcac ttagaaaatg cgtaggtgag cctaaattta gctatgttga
     4441 ttttgattgt tatgtgtcag cgacttttta tgtgattaaa actcaaagaa ttaatgttaa
     4501 atatttaact gctattttaa attcaaagct tatagcattt tggttgaaac ataaaggaaa
     4561 aatgcaaggc aataattatc aaattgacaa agagccttta ctaaatatcc ctatagtaac
     4621 tataaattcc aaaaatcaaa aaatagctga tgagcttata aatttagtcg atgagatttt
     4681 aaaagtcaaa gaacaagaca aaaacgcaaa cacccaagaa ctagaaaaca aaatcaattc
     4741 tttggtttat aaactttacg atctcaccga agaagaaata aaaatcattg aaaataagga
     4801 gcaaaaatga aattaaaact taatttagaa aattgttatg gcatagggaa gttgcaaaaa
     4861 gagtttgatt tttcagataa aaatgtttta ttattttatg ctcaaaatgg tacttttaaa
     4921 acttcttttg caaaaacatt taaaaatatt aaagatgata aacaaattaa agacgaaata
     4981 tttccagaaa
//
LOCUS       DAPIWQ010000119         4963 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.120, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000119 DAPIWQ010000000
VERSION     DAPIWQ010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4963)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4963)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4963
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.120"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            80..1075
                     /locus_tag="RJ267_001457"
     CDS             80..1075
                     /locus_tag="RJ267_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDV7389298.1"
                     /translation="MKKILSLSVASLALCGALNAADLKIAGSSTVYPFTSFVAEEYAS
                     IKNTKTPIVESLGTGGGFKVFCEGTTDISNASRPMKLSEFETCKKAGVTDIVGIMIGY
                     DGIVLAQNKTNAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTIEELVMSDVSKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGIFGYSFLVSNSDKINAANIDGVTPSEESIADEKYELARSLFIYINAKKNPKEAF
                     EFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVEDRKILNDELVKAGKVF"
     gene            1085..1999
                     /gene="pstC"
                     /locus_tag="RJ267_001458"
     CDS             1085..1999
                     /gene="pstC"
                     /locus_tag="RJ267_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HDV7389299.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVVT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIEAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GLSRALGETMIVVMAASLRPNLTLNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFVITLIINMFSVYLINRFHKRKNL"
     gene            1996..3084
                     /gene="pstA"
                     /locus_tag="RJ267_001459"
     CDS             1996..3084
                     /gene="pstA"
                     /locus_tag="RJ267_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HDV7389300.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQIAEKSWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLVQKGEIELKFNSNFFLNGDSKSPENSGILSSVIGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAGAIGETAPLMIIGMIAFIPDVASSIFDPTSVLPAQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVVLNLSAILLRKYFQGKLK"
     gene            3081..3821
                     /locus_tag="RJ267_001460"
     CDS             3081..3821
                     /locus_tag="RJ267_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HDV7389301.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            3882..>4963
                     /locus_tag="RJ267_001461"
     CDS             3882..>4963
                     /locus_tag="RJ267_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDV7389302.1"
                     /translation="MIINQIYSIDSCDDVELNIKRGSKLEFRLTYDDSKEIEAIVCII
                     SGLGGDIDDNLYIEEYCARNYNVAVLSVNYHCIGNRPQTGASFYINELDRLILKTSLE
                     AIGIQLPVDMQNLKTYDEFYCVVDFVNKFIEKLKKEKELSEDYCLYLSVGLEPTKNEY
                     QNYGIMQAMDIINAILYININLPFKVSNMSTVSRMGGGIKTILIGVSHGGYLANLCAK
                     ISPWNIDVVLDNSSNVTLDNDLWRFIGFGREIDYVKYCSVGITYMFKNIKLAAFDKTY
                     WTTNKQSPYYFSNARKIVREPLNKEHLKIQSLYPKPKYIAYHSKFDQYVLLEKRENYF
                     NILRELGFEVDFIKITDEKEIDGKFI"
BASE COUNT         1706 a          629 c          941 g         1687 t
ORIGIN      
        1 atacaaaata aaaaatgttt ccaaaatgtt tccaagtttt tttaaacttc cattactttt
       61 ttaaagttaa ggagaaaaaa tgaaaaaaat tctatcttta agtgtggcaa gtcttgcact
      121 ttgtggtgct ttaaatgcag cagatttaaa aatcgcaggt tcatcgactg tgtatccttt
      181 tacttctttt gtagctgaag aatatgcttc gattaaaaat acaaaaactc ctatagtaga
      241 gagcttggga acagggggtg gatttaaggt attttgtgaa ggaactactg atatttctaa
      301 tgcttcaaga cctatgaaat taagcgaatt tgaaacttgc aaaaaagcag gggtaactga
      361 tatagtaggg attatgatag gttatgatgg tatagtttta gctcaaaata aaaccaatgc
      421 tccattaaat atcacaaaaa aagaactttt cttagcatta gcaaaagaaa ttccacaaaa
      481 tggaaaactt ataccaaatc cttatacaaa ctggaatcaa atcaataaaa atttaccaaa
      541 tcgtaaaatt agtgtttatg gtccaccatc aagttcagga acaagagata ctatagaaga
      601 gcttgtaatg agtgatgtgt ctaaaaaaat tcctgagtat aaaggcgagt ataaaaccat
      661 acgccaagat ggtgcttata tcccaagtgg cgaaaatgac aatctaatcg tttcaaaact
      721 tactattgat aaagatgctt ttggaatttt tggttatagc tttttggtga gcaattcaga
      781 caaaatcaat gctgctaata tcgatggtgt tacgccaagc gaagaaagca tcgcagatga
      841 aaaatacgaa cttgcaagaa gtttgtttat ttatatcaat gctaagaaaa atccaaaaga
      901 agcctttgaa tttgcaaaaa tttatatgag tgatgatttg gcaaaaagtg gtggagagct
      961 tgaaaaaata ggacttgttc ctttaagtga tgataaatta aaagcttctc aaaaacatgt
     1021 agaagataga aaaattttaa atgatgagct tgtaaaagct ggaaaagttt tttaaggaaa
     1081 aactttgcta aaagaaaaaa taatcaaatt tgcacttttt ttatgtgctt ttgtaagcgt
     1141 gatagtaagc tttgctatca tgcttacaat tttaattgaa gctttaaaat tctttcaaaa
     1201 agaaagtgtt gttacctttt tattctcaag tcagtgggca gctgatgcag cttttatgaa
     1261 tgcagatggc acgagcaaac aaggtgtttt tggagcgcta tcgctttttt ggggaacttt
     1321 ttatatttca ttgattgcta tgctaacggc tttaccttta ggggttatgt gtgctatata
     1381 tttaggtgtt tttgctggca aaaaatctaa aaattactta aaacctattt tagaaatcat
     1441 tgcagggatt cctactgttg tttttggatt ttttgcggct atagttgtag cgccttttat
     1501 agtgtggttt ttttctttat ttggcataca agcaagcttt caaagtgctt taggcgcagg
     1561 ttttatcatg gggatcatga tagtacctat agtggcttcg ttatctcaag attgcattga
     1621 agcagtaagc gagaaaagga ttaatggcgc ttatgcttta ggtatgacaa aaaaagaagt
     1681 ggtttttgcc gtgattttac ctgaggctat tcctggtata gttgcagctt gtcttttagg
     1741 actttcaaga gccttaggcg aaactatgat agtggtgatg gcagcttctt tgcgtccaaa
     1801 tttaacttta aattttttag aagatatgac aacggtaacg gtaaaaatcg tagaagcttt
     1861 aagtggagat caagcttttg atagttcttt ggctttaagt gctttttctt taggtttggt
     1921 gctttttgtc atcactttaa tcatcaatat gtttagcgtt tatcttatca atcgctttca
     1981 taaaaggaaa aatttatgaa aaaacttttt aaaaaaagac aaaaagcttc aaagtctttt
     2041 aaaagacttt gtaaaatggg gctttatatt aatttaattt ttctttgtat ctttttagga
     2101 agtgtggctt atcttggatt tcctgctttt aagcaaacct atatttttgt agaggctaat
     2161 agaaattctc ctgcttatga tcttttatct cgcgcagaac aaagaaaaat aagaacagga
     2221 caaatcgctg aaaaatcttg gcttttggca aattcagaag tagatcaata tatgaagcaa
     2281 aaatataatc gccttagtga aaaacaaaga actttagtcg atgatcttgt gcaaaaaggc
     2341 gagatagagc ttaaatttaa tagcaatttc tttttaaatg gggactcaaa atctcctgaa
     2401 aattcaggaa ttttatcttc agttataggg actttgcttg ttatgcttgt ttgtatggtt
     2461 gtgagtgttc ctataggcgt tgcagcggca atttacttag aagaatttgc accacaaaat
     2521 atccttacac attttataga agtgtgtatt aacaaccttg caagtattcc tagtatcttg
     2581 tttggacttt taggacttgg agtgtttatc aatctttttg gaatgcctcg ttcaagtgct
     2641 ttagtgggtg ggcttacttt ggcgatcatg agtttgccta ttatcattgt ttcaaccaaa
     2701 gcggccttaa aaagtgtgga tatcaatatg aaaaatgctg cttatgcctt aggtatgaca
     2761 aaggttcaaa tggtaaaagg tattatgtta cctttggcta tgcctatgat tttaacaggt
     2821 tctattttga ctttagcagg ggctataggc gagactgcac ctttgatgat tatcggtatg
     2881 atagccttta tccctgatgt agctagttcg atttttgatc caactagcgt tttacctgct
     2941 caaatttact catggtctgc tatgccagag cgtgcatttt tagaaagaac agcagcgggt
     3001 attattgtgc ttttaggact tttagttgtg ttaaatctta gtgcaatatt attaagaaaa
     3061 tattttcaag gaaaattaaa gtgatagcaa aaacaacaaa tttaaattta ttttatggaa
     3121 aaaaacaagc tttatttgat atcaatatgc aaatagagca aaacaaaatt actgcactca
     3181 tcggtgcttc aggatgtggt aaatccactt ttttgcgttg ttttaataga atgaatgata
     3241 aaattgcaaa aatcgatggt ttagtggaaa ttgaaggaaa agatgttaaa aatcaagatg
     3301 tagtagcctt gcgtaaaaat gtaggcatgg tttttcaaca acccaatgtt tttgtaaaaa
     3361 gcatttatga aaacatctct tatgcaccaa aacttcatgg tatgattaaa aacaaagatg
     3421 aagaagaagc tttggtggtg gattgcttgc aaaaagtggg gctttttgaa gaggttaaag
     3481 ataaattaaa gcaaaatgcc ctagctcttt caggcggaca acaacaacgc ctttgtatcg
     3541 caagagcttt agcgatcaaa ccgaaacttt tgcttttaga tgagccaact tctgcacttg
     3601 atcctataag ttcaggcgtg attgaagagc ttttaaaaga attaagccat aatctttcta
     3661 tgatcatggt tacgcataat atgcaacaag gcaaacgcgt agctgattat acagcatttt
     3721 ttcatcttgg agagcttata gaatttggtg aaagtaaaga attttttgaa aatccaaaac
     3781 aagaaaaaac caaggcttat ttaagcggtg cttttggata agatttattt tttggaaatt
     3841 tgatgatata attaattaaa aatttcaaaa aaaggtttaa tatgattata aaccaaattt
     3901 attctataga ttcttgtgat gatgtagaat taaatatcaa aaggggaagt aaattagaat
     3961 ttagattgac ttatgatgat agtaaagaaa tagaagctat tgtttgtatt atatccgggt
     4021 taggtggaga tatagatgat aatttatata tagaagagta ttgtgcaaga aactataatg
     4081 tggctgtttt aagtgtaaat tatcattgta taggtaatcg tcctcaaact ggagcgtcat
     4141 tttatattaa tgaacttgat agattgattt taaagacaag cttagaagca attggaatac
     4201 aacttcctgt agatatgcaa aatttaaaaa catacgatga attttattgt gtagtggatt
     4261 ttgttaataa atttatagag aaattaaaaa aagaaaaaga attgagtgaa gattattgtc
     4321 tgtatttaag cgtaggtctt gaaccaacta aaaatgaata tcaaaattat ggtattatgc
     4381 aggcaatgga tattataaat gctattttat atataaatat caaccttcct tttaaagttt
     4441 ctaatatgtc gaccgtgagt aggatggggg ggggtataaa gactatatta ataggtgttt
     4501 cgcatggagg atatttagcc aatttatgtg caaaaatctc tccttggaat attgatgttg
     4561 ttttagataa ttcttctaat gtgactttgg ataatgattt atggagattt ataggctttg
     4621 gaagggagat agattatgta aagtattgta gtgtaggtat tacatatatg tttaagaata
     4681 ttaaactagc agcttttgat aaaacttatt ggactacgaa taaacaatct ccatattatt
     4741 tttcaaatgc aagaaaaata gtaagagaac cattgaataa agaacattta aaaattcaaa
     4801 gtttatatcc aaaaccaaaa tatatcgctt atcattctaa atttgatcag tatgttttac
     4861 tagaaaaaag agaaaattat tttaatattt taagagaatt ggggtttgag gttgatttta
     4921 tcaaaataac tgatgaaaaa gaaatagatg gaaaatttat taa
//
LOCUS       DAPIWQ010000120         4940 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.121, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000120 DAPIWQ010000000
VERSION     DAPIWQ010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4940)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4940)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4940
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.121"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..459)
                     /locus_tag="RJ267_001462"
     CDS             complement(<1..459)
                     /locus_tag="RJ267_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HDV7389303.1"
                     /translation="MEKIKNYKLIIILLSLDLLALLYGTSTLSISADEADIYFGEQGK
                     SLIFSHSLLYYISHFGTFIFGQNDFGLRLPFLFFHFLSCLLLYLLALKYTKTKIDAFF
                     SLLLFVLLPGTVASALLVNAASLVIFLTLAILCAYEYEKKWLFYILLIIVL"
     gene            587..1171
                     /locus_tag="RJ267_001463"
     CDS             587..1171
                     /locus_tag="RJ267_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HDV7389304.1"
                     /translation="MQTIDQIFQTQIDIKKSTFLSFLCPFKDFKFLIETLKKEHPKAV
                     HFVYAYRVLNDFNQIVEDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKL
                     GTGGLVRAYSDAANAVINNSSLLSFELKKNTTIAIDLKNLNRFEHFLKTYSFNFTKDF
                     KDCKAILHIKLNEKEEQEFEIFCKNFAPFEIEKL"
     gene            complement(1215..1598)
                     /locus_tag="RJ267_001464"
     CDS             complement(1215..1598)
                     /locus_tag="RJ267_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389305.1"
                     /translation="MQVNYRTISSYEYDAISGQYKQVDKQIEDYSSSGDSDFMDMLNK
                     ADEKSSGDALNSSSSFQSNAQNSNSNLSNYAQMSNVYAYRFRQNEGELSMRAQSASVH
                     NDLTQQGANEQSKNNTLLNDLLNAI"
     gene            complement(1673..2008)
                     /locus_tag="RJ267_001465"
     CDS             complement(1673..2008)
                     /locus_tag="RJ267_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389306.1"
                     /translation="MMAKFRIQYSAGFGHYTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYKTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKMRDENCKKAKEEFIANNELD
                     VEHLPTHHD"
     gene            complement(1998..3575)
                     /locus_tag="RJ267_001466"
     CDS             complement(1998..3575)
                     /locus_tag="RJ267_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HDV7389307.1"
                     /translation="MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFL
                     KILSGEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKL
                     YMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADK
                     FKVLLAQVLFLGADALFLDEPTNNLDLEAISWLENELLRHEGTLVVISHDRHFLNKIC
                     TRILDVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANAS
                     KAKQATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLEIKGIGKAYDKQLFS
                     NLELKIEKNDKIALIGANGVGKSTLAKIIAHAISPDSGSIHLGATIELGYFPQDTSNL
                     ICENLKLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLML
                     ERPNFLLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGK
                     LTDFRGTYQEFLGENDG"
     gene            complement(3705..4121)
                     /locus_tag="RJ267_001467"
     CDS             complement(3705..4121)
                     /locus_tag="RJ267_001467"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389308.1"
                     /translation="MFKKVILFFLMGFALLQANSLDKCDNTAVVSNLKEKIPSEIFKN
                     LYELSGLKAQGIDYEDYAKGLKEIAKHDGMVNYTDMIEVNSISNFDLNFDSCMATINA
                     ALKGEQRKGLWSVVYKVSNINQVKITDITYINGDFQ"
     gene            complement(4134..4766)
                     /locus_tag="RJ267_001468"
     CDS             complement(4134..4766)
                     /locus_tag="RJ267_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system YwqK family antitoxin"
                     /protein_id="HDV7389309.1"
                     /translation="MTKFLSICSLIAMLLSGCGSDFPGQPSDVARVQQNKYPNGNLKE
                     EIPYNKDSRIHGLKRAFYDNGQLRAEENYKNGKKDGISREYSRNGQLLEEVHFKDNRG
                     YGDFASYYENGNMRAKGKLLGYNEDGMPEFEGNYKEYYENGTLMCDYNFDNKGKFDGV
                     QKRYDENGALEDEENYKNGLKNGVFREYKKGEIVREEEYKNGILVAKPKN"
     gene            complement(4775..4924)
                     /locus_tag="RJ267_001469"
     CDS             complement(4775..4924)
                     /locus_tag="RJ267_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002899643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superinfection immunity protein"
                     /protein_id="HDV7389310.1"
                     /translation="MSRKHSNWLIISLLNLFFGWTIIVWLVCLIWSFTGSFKQTIIIK
                     EKNEK"
BASE COUNT         1709 a          922 c          584 g         1725 t
ORIGIN      
        1 taatactata atcaataata tataaaaaag ccattttttt tcatattcgt aagcacataa
       61 tatagcaagg gttaaaaaaa tcaccaaaga tgcggcatta accagtaaag cacttgcaac
      121 agtacccggc aataaaacaa ataacaataa agaaaaaaaa gcatcaattt tagttttagt
      181 atattttaaa gctagcaaat acaaaagcaa acaacttaaa aaatgaaaaa ataaaaaagg
      241 aagccttaaa ccaaaatcat tttgcccaaa aataaaagtt ccaaaatgag atatataata
      301 aagcaaacta tgagaaaaaa taagtgattt accctgctca ccaaaataaa tatcagcttc
      361 atcagcacta atactcagtg ttgaagttcc ataaagcaaa gccaacaaat caagactaag
      421 taaaatgatg ataagtttat aatttttgat tttttccata atgaaaattt tacaaaatta
      481 aacttaaaat atcaatgcaa atcatacaaa tatcaaatat cttaaaaatt aacatcaaat
      541 tgattttagt ttttataagt ataattttaa ataaaagaag gcaaaaatgc aaactattga
      601 tcaaattttt caaacacaaa tcgatattaa aaaatctact ttcttatctt ttctttgccc
      661 ttttaaagat tttaaatttt taatagaaac actaaaaaaa gaacatccaa aagccgttca
      721 ttttgtctat gcttatcgtg ttttaaatga tttcaatcaa attgtagaag ataaaagtga
      781 tgatggagag cctaaaggaa cttctggaat gccaacttta aatgttctaa ggggctatga
      841 tcttatcaat gcggctttaa tcactgtaag atattttggc ggtataaaac ttggtacagg
      901 gggacttgta agagcttata gcgatgcagc aaatgctgtg ataaataatt cttctttact
      961 ttcattcgaa ttgaaaaaaa atacaaccat tgctattgat ttaaaaaatt taaatcgttt
     1021 tgaacatttt ttaaaaactt attcttttaa tttcacaaaa gattttaagg attgcaaagc
     1081 tatattacat atcaaattaa atgaaaaaga ggagcaagaa tttgaaattt tttgtaaaaa
     1141 ttttgcacct tttgaaatag agaaattata aattcttgca agtaaatata aaagctccaa
     1201 aatggagctt ttgattaaat tgcgttcaat aaatcattta acaaagtatt attcttactt
     1261 tgttcatttg caccttgttg tgtaagatca ttatgaacgc tagcactttg agctctcata
     1321 gacagctcgc cttcattttg tctaaaacga taagcgtaaa catttgacat ttgagcataa
     1381 ttacttaaat ttgaatttga gttttgcgca ttgctttgaa aactactgct agaatttaaa
     1441 gcatctccgc ttgacttctc atccgcctta tttaacatat ccataaaatc agaatctcca
     1501 gatgaagaat aatcttcaat ctgtttatcc acctgtttat actgaccact aatagcatcg
     1561 tattcatacg agctaatcgt tctataattt acctgcatag ttttctcctt tcaaaatatg
     1621 caaaaactat acaagcaaaa agcgttcctt tttatgtaaa aattaatgtt ttttaatcat
     1681 ggtgagtagg caaatgctcc acatcaagct cattgttggc tataaattcc tccttggctt
     1741 ttttacagtt ttcatcacgc attttgcggt attcattgcg aatggtgatt tctttatcgc
     1801 ttagaggtct atcttctaaa aaactgatat gaaaataagt atcatcgctc tttgaataag
     1861 ttttataaaa atctatatag tcaaaataat ccttgccatt atcaaactct acgacctctt
     1921 ctatataaat cgtaggtcca aaacccttgt gattttgcgt atagtgccca aaacctgcgc
     1981 tgtattgaat tctaaattta gccatcattt tctcctaaaa attcttgata agttccacga
     2041 aaatccgtaa gcttaccatt ttctaaatgc caaattctat tagcaaaagc agaaactaac
     2101 tccctatcgt ggctgataca aagcactaca cctttgaaat tatacaaagc ttcacctagt
     2161 gcaataatac tttcaagatc taaatggtta tcaggctcat ctaaaagcaa gaaatttgga
     2221 cgctctagca ttaaacgaga aagcattaaa cggtgttttt cacccccact taaacttgct
     2281 gccatctttt cttgatcact gccactaaaa agcattctac ctaaacactt acggatttca
     2341 tctagatctt taaatttttc actcatcaac cattcataaa gtttcaaatt ttcacaaatt
     2401 aaattacttg tatcttgagg aaaatatcca agctctatag ttgccccaag atgtatggat
     2461 ccactatctg gacttatagc atgggcgatg atttttgcca aagtactttt gcccacacca
     2521 tttgccccaa tcaaagcgat tttatcattt ttttctattt ttagctccaa atttgaaaac
     2581 aattgtttat cataagcctt gcctatacct ttaatttcta aaacttcatt acctatttca
     2641 cgattagttc taaatactat actaggatct ctacggcttg aaattttaat ctcttcaagc
     2701 tctagttttt caagcgcctt agcacggctt gtggcttgtt ttgctttaga agcatttgca
     2761 ctaaaacggc gaatgaaatt ttctaattct tctctttctt ttaaggtttt atcgcgttta
     2821 agctcagctt gttttgccaa aagcgttgaa gccatatacc aatcatcata atttcccgca
     2881 aaatcacgaa tttgtttaaa atccacatcc aaaatccttg tgcaaatttt atttaaaaaa
     2941 tgcctatcat gagagatgac aaccaaagtt ccttcatgtc ttaaaagttc attttcaagc
     3001 caagaaatcg cctctaaatc aaggttattt gtaggctcat ctaaaaaaag cgcatcggca
     3061 cctaaaaaca aaacttgagc taacaaaact ttaaatttat ccgcactttg taaggtgctc
     3121 attaaagcat cgaaatcttt aatctttaaa gaacttaaaa ttttttcaca acgtgtttca
     3181 caatcataat ttggatcttc ttcagccgtt attatctcaa gctcacctaa acgctcattg
     3241 atctcatcag taaattcctc gctcatataa agcttttctt tttcttttaa ggcctcatat
     3301 aaacgcttat ttgcacacat cactgcatct ttgatggtgt agttttcaaa agcaaattga
     3361 tcctgtccta aaactgcgat tttcaagcct tcatcaaata ctatttcacc actacttgac
     3421 tcaatttctc ctgaaagaat tttcaaaaaa gtcgattttc ccgcaccatt agcaccgata
     3481 agtccgtatc tttgtcctcg aacaagtttt aaattaacat tttcaaataa aagctgattt
     3541 gcaaaacgca tagtaagatt ttttacttca accatgattt tccttaaatt ttttacttat
     3601 aaaaattttt aagaaattgt atcaaaaaaa gacttgaaat taattgagta taaaatatta
     3661 gtaagtcatg aaattaattc tattgactta ctttaataaa aatattattg gaaatctcca
     3721 ttgatataag ttatatctgt aattttcact tgatttatgt tagaaacctt ataaacaaca
     3781 ctccaaagac cttttctctg ttcccctttt aatgcagcat taatcgtagc catacaagaa
     3841 tcaaaattaa gatcaaaatt tgaaatggaa ttaacttcga tcatatcagt gtaatttacc
     3901 attccatcat gcttggctat ttccttgagg ccttttgcat aatcttcata atcaatccct
     3961 tgggctttaa gtccggataa ttcataaaga tttttaaaaa tttcactagg aattttttct
     4021 ttaagatttg aaacaactgc cgtattatca catttgtcta atgagttggc ctgaagcaag
     4081 gcaaacccca ttaagaaaaa taaaattact tttttaaaca tatctaaact cctctaattt
     4141 ttaggttttg ctactaaaat accattttta tattcttctt ctcttacaat ctcccctttt
     4201 ttatattctc taaagactcc atttttaagt ccatttttat aattttcttc gtcttctaag
     4261 gcgccatttt catcataacg cttttgtact ccatcaaatt tacctttatt atcaaaatta
     4321 taatcacaca ttaaagttcc attttcataa tattccttgt aattaccttc aaattctggc
     4381 ataccatctt cattatagcc aagtagtttt ccctttgctc tcatatttcc attctcataa
     4441 tagcttgcaa aatcaccata tccgcgatta tctttaaaat gcacctcctc aagtaattgc
     4501 ccatttctag aatattccct gctaattcca tctttttttc catttttata attttcttca
     4561 gctcttagct gaccattgtc ataaaaagct ctttttaacc catgtattct tgaatcttta
     4621 ttatagggaa tttcttcttt taaatttcca tttggatatt tgttttgctg aactctagcc
     4681 acatcgctag gttgtccagg aaaatcactt ccacaaccac ttaacaacat cgcaattaaa
     4741 ctacaaatgc ttaaaaattt tgtcattttt tctcctattt ctcatttttt tctttaataa
     4801 taatagtttg cttaaaactt cccgtaaaag accatattaa acaaacaagc caaacaataa
     4861 tagtccaacc aaaaaacaaa tttagcaaag aaattatcag ccaattagaa tgctttctgc
     4921 tcaaaccaat aatagcgggc
//
LOCUS       DAPIWQ010000121         4886 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.122, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000121 DAPIWQ010000000
VERSION     DAPIWQ010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4886)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4886)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4886
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.122"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..296
                     /locus_tag="RJ267_001470"
     CDS             <1..296
                     /locus_tag="RJ267_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389311.1"
                     /translation="PIELQNKIVLSIGIRLKAEEFMLSKVNLQNEITRNQTRNLYNLT
                     KEQNAINDKQDFIIRKVLAITSDNIHINSFMYEPILDTSIEHLVKLYRDIKKI"
     gene            complement(371..1072)
                     /locus_tag="RJ267_001471"
     CDS             complement(371..1072)
                     /locus_tag="RJ267_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HDV7389312.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEIEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLEKQGIKEDEISYNSPNIID
                     RLSDPYSNDTQAAYRYIGTANLLIYTQNVKLGKSILENISSLAKFGIVTKIDDYDIEY
                     LYTKLNDIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSISNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(1069..2271)
                     /locus_tag="RJ267_001472"
     CDS             complement(1069..2271)
                     /locus_tag="RJ267_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HDV7389313.1"
                     /translation="MQKHTKIHGFAKFKLIVILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCVIIDDI
                     YAFIALRFFEALGGCAGVVIARAIINDLFEIKEAAGIFALMMVFSSLAPMLSPTFGGI
                     LLEYFSWHSIFATLFALGILLFLMILFGLKESAPHLKNKKISHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFSLSEQKFALLFGANALGFVICANINARL
                     VLKYESEKILAKALMIMFISTVILLVNAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGTVQFGFAGLISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKEKK"
     gene            2374..3723
                     /locus_tag="RJ267_001473"
     CDS             2374..3723
                     /locus_tag="RJ267_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HDV7389314.1"
                     /translation="MQNLNQNEQIKCPSCGSFIDISTALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYIKALNDLKTQKIEQEKLINEQVSQKLLLEKQKFEQELLIQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQENKNLEFEREKMRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCLHIVKDNFGNICGSILYES
                     KRTKEFNKEWLDKLKLDSIAAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVL
                     AVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGIKSLENLAKDED"
     gene            complement(3747..4790)
                     /locus_tag="RJ267_001474"
     CDS             complement(3747..4790)
                     /locus_tag="RJ267_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDV7389315.1"
                     /translation="MKKHILLLGLCLSLSLSAKSMSDYKVGEELSDKEGVEYFKELSK
                     RPVQEWPNKNLSINDVPKGKQGDLIRYGIELLSKTESTLGPYSKLKKTSNEVNCISCH
                     MDNDGNGLPGTKKYVIPFLNVLNNYPKLDIETMKIISVEDRIRGMGGTDSHRFPNDSK
                     EMKAILAYFKWLKEAYGIKDGVKLEGDFFAKMNFPNRPADPVRGKKLFEENCVACHGE
                     RGLGVKNDNYEQGSGHLYPSLLIYPDGGHMAMIPFLARFLKSAMPFGASADNPILSDE
                     DALDIAAYVNTGFVRMPITTTENRAGLDTAYSKSPSLKPEYFASPQQNLDPKEYIKVK
                     YGPWKNPNHFPGE"
BASE COUNT         1801 a          792 c          786 g         1507 t
ORIGIN      
        1 atcctataga attgcaaaat aaaatagtct tatcaatcgg aattagatta aaagcagaag
       61 aatttatgtt atctaaagta aatttgcaaa atgaaattac cagaaatcaa actagaaatt
      121 tatataattt aaccaaagaa caaaatgcaa taaatgataa acaagacttt ataattagaa
      181 aagttttagc aataacttca gataatattc atataaattc ttttatgtat gagcctatct
      241 tagatacatc tatcgaacat ctagtaaaat tatatcgtga tataaaaaag atttaaataa
      301 gcataaaaac cgcacgaaaa aattccatag tgccaagcta agccttaaag cttagcttga
      361 aattttatca tcagtctttt aagtagtatt ctatagtaga aaccactctt atggttttga
      421 tataaggggt gtttttatct ctgttgctga tgctaaattg tccttgagaa gcctttttta
      481 tcttgcctag atggctgttt gagtcttgtg cgaattttat cgctgcattt ctagcattga
      541 gcgttgcttc ttctatcatt tgtggtttta tatcatttag cttggtgtaa aggtattcta
      601 tatcataatc atcgattttt gttactatac caaattttgc aagacttgaa atgttttcta
      661 gtatgctttt tccaagcttt acattttgag tatagatgag taaattcgca gtgcctatgt
      721 atcggtatgc agcttgagtg tcgttgctat aaggatcgct taaacgatct atgatatttg
      781 gcgagttgta gctgatctca tcttctttta tgccttgttt ttctaaaaat ttgatgatat
      841 tttctttatc ttgttctagt tcttcgtata aatttgtaag attattgttt gatcttgtga
      901 attttatagg aagtatcaaa gtatccgctt cgatttcttt ttgacttaaa ccctttacac
      961 ttacacttct ttcaagtgtt ttaaaatcac ttaaagcctt gttaaatcca aaagctagaa
     1021 tcaaacttgc caaaactatg gctaaagcca taaagatatt atttgttttc attttttctc
     1081 ctttattttg attagaaaat atatcatatt tgcaaccaat acgcaagcac acattacaaa
     1141 agcaaggatt atcggcgtat ttgcgttaat agccccaacc acaaaagaaa taagccctgc
     1201 aaaaccaaat tgcaccgttc caagcaccgc agaagcagtt ccgctatgtt ctttaaacct
     1261 tgccatagcc aaagtcgtgg tattgggtgc gatgaaacca agcatagcga tacttgtaaa
     1321 aatactaagt tcaaaaagca agaaatttgg atgaaaaaag gcatttacaa gtaaaatcac
     1381 ggtcgatata aacattatca tcaaagcttt tgccaaaatt ttttcgcttt cgtattttaa
     1441 aaccaatctc gcattgatat ttgcacagat gacaaaacct aaagcatttg ccccaaaaag
     1501 caaggcaaat ttttgctcac ttaagctaaa aaactgcgta aaaacaaagc ttgatcctgt
     1561 gatataagca aacatcgccg ccaaagcaaa agaagcacat agtatataaa ccaaaaagcg
     1621 tttatcgctt aaaacaaatt tgtagctttt catcgcttca tgatgggaaa tttttttgtt
     1681 tttaagatga ggtgcggatt cttttaaacc aaaaagtatc atcaaaaaaa gtaaaattcc
     1741 taaagcaaac aaagtcgcaa aaatactatg ccatgaaaaa tactctagta aaattccccc
     1801 aaaggttggt gaaagcatag gagcaagaga actaaaaacc atcatcaaag caaaaatccc
     1861 tgcagcttct ttgatctcaa acaagtcatt gataatagcc cttgcgataa ccacacctgc
     1921 acaaccccca agtgcttcaa aaaatctcaa agcgataaaa gcataaatat catcgataat
     1981 cacacaaaac aaactcgaaa cgatgaagaa aaatatcccc accaaagctg gaattttacg
     2041 cccaaaaata tcacttaaag gcccatatat aagctgtcct aaagcaaaag cgataaaaaa
     2101 acttgcgata ctaagttggg ttaaaaaaga attagtttga aaactttgct ccacatgaga
     2161 aagtgcaggc aaatacatat ctgtagaaag tggtgctatg cttgacatca aagcaaggat
     2221 aacgatgagt ttaaatttag caaagccgtg aattttggtg tgtttttgca tttgtaatcc
     2281 taattattct aaaagaatga ttttaacaag tcaatcttag aataatcttt gtttttctat
     2341 gttaaattta gggaaaaatt ctaaggaaat tttatgcaaa atttaaacca aaatgaacaa
     2401 atcaaatgcc caagttgtgg aagttttatc gatatcagca ctgctttata tgctcaaatt
     2461 ttagataaag ctaagcaaga aatgctaaaa caaaaaaaag aatttgatga tgaggtaaat
     2521 gctaaaagag ctgaatatat caaagcttta aatgatttaa aaactcaaaa gatagaacaa
     2581 gaaaaactca taaacgagca agtaagccaa aagcttcttt tagaaaagca aaaatttgaa
     2641 caagaacttc ttatacaaaa gcaaaatttc caaaaagaat tcagcgagaa atttaacaaa
     2701 gagcatgaaa atgaaatgaa aatcatgcaa gaagaactcg agaaaaaaag caaagagctt
     2761 agcgagtttt taagcataaa ggctgaaaat gaaagactta aaagagaaca aaaagaaaat
     2821 gaagaaagac tgaaatttca agccaaagaa gaggctttta aagaatttaa agaacaagaa
     2881 aacaaaaatt tggaatttga aagagaaaaa atgcgtcttg aatttcaaaa aagcactcaa
     2941 gagcaagatc ttaaatacaa agaactagaa acgaatttta aaagcgtagc ccaaaagcta
     3001 gaagacgcac aacgcaggat agaacaaggc tcacagcaac tccaaggcga agcagctgaa
     3061 ctactcatag aagaatacat acaaagtgag tatttaagcg atgaagtaaa agaagtgcca
     3121 aagggcgtaa atggagctga ttgtctgcat atagtaaagg ataattttgg aaatatttgt
     3181 ggaagtattt tatatgagag caaacgcact aaagaattta ataaagaatg gcttgataaa
     3241 cttaaactag acagtatagc cgcaaaaagt gatatagcgg ttttgatcac aaaaactatg
     3301 ccaaaagata aagaaaaaac gcattttaaa gaaggaattt tgatttgtac ttttaatgaa
     3361 ttcaaaggcg ttttagcagt gcttagagaa agcattataa acgcttataa actcaaaaat
     3421 gccttacaaa acaaagatga aaaaaatcac attttatacg aatacttaaa ttccaaggaa
     3481 tttaacacgc aaattacttt tatactcaaa acttaccaaa atatgaaaga agaattagaa
     3541 gctgaaaaaa gagctttgca aaatatatgg aaaaaaagag aaagagctat agaaaatcta
     3601 agttttaatt ccactgccat agtgagttct ttaaatgcga tatttagtga cttacaaggt
     3661 ggaaatttga taggcgaaga agggattaaa agtcttgaaa atttagccaa agatgaggat
     3721 taattttggg ctaagcccaa aattaatcat tctcctggga agtgatttgg atttttccaa
     3781 ggtccgtatt ttacttttat gtattcttta gggtctaaat tttgttgtgg tgaagcaaaa
     3841 tactcaggtt ttaatgatgg ggatttgcta taagctgtat caagtcctgc acgattttct
     3901 gtagtggtta taggcattct tacaaaacct gtattgacat aagctgctat atccagtgca
     3961 tcttcatcgc ttaatatagg attatctgca ctcgcaccaa aaggcatggc tgattttaaa
     4021 aatcttgcta aaaatggtat catagccatg tgtccaccat caggatagat aagtaaagat
     4081 ggatataaat gtccgctacc ttgttcgtaa ttatcatttt ttaccccaag tcctctttcg
     4141 ccatggcaag caacgcaatt ttcttcaaag agtttttttc cacgcacagg gtcagctggg
     4201 cgatttggaa aattcatctt agcgaaaaaa tctccttcaa gctttacgcc gtctttgatg
     4261 ccataagctt cttttagcca tttaaaataa gctaaaattg ctttcatttc tttagaatca
     4321 ttaggaaatc tatgagagtc agttccaccc attccgcgaa ttctatcttc aacagagatg
     4381 attttcatcg tttctatatc aagttttgga taattgttta ggacatttaa aaatggaata
     4441 acatattttt ttgtccctgg taaaccattg ccgtcattgt ccatgtgaca ggaaatacag
     4501 tttacttcgt tgcttgtctt ttttagcttg ctatagggtc ctagagtact ttctgtcttg
     4561 cttaaaagct ctatgccata acggattaaa tccccttgct taccttttgg aacatcattg
     4621 atgcttaaat ttttatttgg ccattcttgc acaggtcttt tggaaagttc cttaaaatac
     4681 tctactcctt ccttgtcgct taattcttct cctactttgt aatcactcat gcttttagca
     4741 ctaagactca aactaagaca taaaccaagc aataaaatgt gttttttcat gattttcctc
     4801 ctttttattt gcagttcaaa ttgattttag tgtatttttt cttaaatatt aagcataata
     4861 agaataattt aaataaaatt aaattt
//
LOCUS       DAPIWQ010000122         4753 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.123, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000122 DAPIWQ010000000
VERSION     DAPIWQ010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4753
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.123"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..751)
                     /gene="map"
                     /locus_tag="RJ267_001475"
     CDS             complement(<1..751)
                     /gene="map"
                     /locus_tag="RJ267_001475"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HDV7389316.1"
                     /translation="MIELKKPDEIEKLRIANQIVAKTLNFLENEIKIGMSLKQIDKMA
                     EDYILSLGAKPSFKGLYGFPGAICTSLNQVCIHGIPDDKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGEVSPADKALISCAKDALYHAIDIIRDGMRFKELSAALGEFIHVRGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHY
                     NGKWDAGSIDGLNAAHYEHCVAVINGRAEILS"
     gene            complement(753..1505)
                     /locus_tag="RJ267_001476"
     CDS             complement(753..1505)
                     /locus_tag="RJ267_001476"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HDV7389317.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIK
                     ALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
                     SAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENID
                     LKNHKAKLHFYASSDVESLKNTAKIWLNLLRK"
     gene            complement(1507..1965)
                     /locus_tag="RJ267_001477"
     CDS             complement(1507..1965)
                     /locus_tag="RJ267_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDV7389318.1"
                     /translation="MRHIFFIITIIFFISGCSFYQNLNYRPSYNTNKEARLKVIANEW
                     KKTPYVLGGTSKKGADCSGFTQSALAQLNIRIPRTTKTQLGSGRKVSKSKLQTGDLVF
                     FKTGRGPNGMHVGIYMSKGKFIHLSTKDGVKEVELNSSYWKARYIGARRY"
     gene            complement(1974..3143)
                     /gene="nhaA"
                     /locus_tag="RJ267_001478"
     CDS             complement(1974..3143)
                     /gene="nhaA"
                     /locus_tag="RJ267_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HDV7389319.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     AALGGILIPAMLFALVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSIAAFVIAGLAILVMLILNLLGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIVTAFFIPMQTKNGEAFLEEIYESLKFWIAFIILPLFAFANAG
                     VNLSNIDIGAIFSGVSIGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFTTRS"
     gene            complement(3140..4288)
                     /gene="nhaA"
                     /locus_tag="RJ267_001479"
     CDS             complement(3140..4288)
                     /gene="nhaA"
                     /locus_tag="RJ267_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HDV7389320.1"
                     /translation="MQMIKKMVLSETFPGILLIFFTFLALLCKNSSLSVIYTDFFHAN
                     FTVGFDHFQISKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRAVSLPIFGALG
                     GMITPALIFIAINYSHDFAMKGWAIPTATDIAFAVGILMLLGNKIPTSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIISLFIPLDTKNKKPYLHEVLKDLNPWVVYFILPLFAFANAGIDIR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFTFCFIAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEYADKLAILVASFLSAIVGFIYLKIVK"
     gene            complement(4431..4613)
                     /locus_tag="RJ267_001480"
     CDS             complement(4431..4613)
                     /locus_tag="RJ267_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HDV7389321.1"
                     /translation="MVSDVSMGNVNLMTAVNTSVLKKSMDTNEALMNELIEGMEGVSQ
                     ASAPQASSSSGLDIYA"
BASE COUNT         1789 a          903 c          583 g         1478 t
ORIGIN      
        1 tagaaagaat ttcagcacgc ccattaatca cggcaacaca atgttcataa tgagccgcat
       61 tcagcccatc aatacttcca gcatcccatt ttccattata atgctttggt gttccatctt
      121 tttggcatat cataggctct atgcaaaaca ccattccatt tttaatttta gggccacttt
      181 ttgcactcgc acctttttct aaatagttta aaatttcagg ctctccatgg ggctttcgtc
      241 ctataccatg cccgcaatat ccacgaagcg ggacaaaacc tcttacatgg ataaattcgc
      301 ctaaagcagc tgaaagttcc ttaaaacgca ttccatcacg aataatatct atagcatgat
      361 ataacgcgtc tttagcacaa gagattaaag ctttatcagc gggtgaaact tctcctatag
      421 caatagttct tgctgcatcc ccataatacc catcaatcaa acttcccaca tcaagaccta
      481 aaatatcacc ctctttgata attttatcat ctggaattcc atggatacaa acttgattta
      541 aagatgtgca aatggcacct ggaaaaccat aaagtccctt aaatgatggc ttggcgccaa
      601 ggcttaaaat ataatcttct gccattttat cgatttgttt taagctcatt cctattttaa
      661 tttcattctc taaaaaattt aaagtttttg ctacaatttg atttgctatt cttaattttt
      721 ctatttcatc tggttttttc aattctatca ttttatttcc ttaataaatt tagccaaatt
      781 ttagcagtat tttttaaaga ttcaacatcg cttgaagcat aaaaatgtaa ttttgcttta
      841 tgatttttca aatctatatt ttctctttct ttaagaaatt caactatagc atctcctgaa
      901 tgaattaatt ttgttttatc accaaaatac ttacttaaag aacgtcctag taaagggaaa
      961 tgagtgcaag cgagtatcaa agcatctgga gttgtgatat ttttaaaata atattccata
     1021 gcactttgca aaaaatctcc ttcaaaaata ccttcttcaa ccataggcac aaaaagccct
     1081 gtagctaaag catttatatt tgtatatcct tgagataaca aacgcttttg atattcttct
     1141 gatttaatgg ttgcttttgt cgcaatgact aaaatttctt tatttttatc atgcaaagct
     1201 tttatcgttg cttcaacccc tgcatcaatt acgccatata ctggaaaatg tgcttttgct
     1261 cttaaagcat ctaaagcata agcactagca gtattacatg caatgataag catatcaatt
     1321 tgaaattgtt caaaaaaatc caatgcttca agacagaact ttataatagt atctttatct
     1381 ttcactccat aaggaactct tgcggtatct ccataataga taatttcatc aaaaagccta
     1441 gcttcataga gagattttaa aacactaagc cctcctactc cgctatcaaa tacacctatt
     1501 ttcactttaa taccttcttg ctcctatata acgagccttc caataagaac tatttagctc
     1561 gacttctttt actccatctt tagtagataa atgtataaat tttcccttgc tcatataaat
     1621 accaacatgc ataccatttg gccctctacc tgtcttaaaa aataccaaat ctcctgtttg
     1681 caattttgat ttagaaactt ttcttccaga acctaattga gtttttgtag tgcgaggtat
     1741 gcgtatatta agctgagcta atgcgctctg tgtaaatcct gaacaatcag cacctttttt
     1801 actagttcca cctaaaacat aaggggtttt tttccattca tttgcaataa ccttgagcct
     1861 tgcttcttta tttgtgttgt aactaggacg atagtttaga ttctgataaa aactacatcc
     1921 acttataaaa aatataatcg tgatgatgaa aaaaatatgc ctcatcaatc cccttaagat
     1981 cgagtagtaa agaatttaag ataaataaaa ccccaaatcc cagaacaaaa tgaggctatg
     2041 agaatagcta agttatctgc ataattaaaa atatcactaa cttcatacgc caatccatca
     2101 ataaacaaac tcattgtaaa accaattcct gtaagtatgc aaaccccata aagttgtttc
     2161 aaatttgaac cttggggcaa agctgcaaat ttaaagcgga ttgccaaata agaaaataaa
     2221 aatacaccca cttgtttacc cacaaaaagc cctaagaaaa tacctatact tacacctgaa
     2281 aaaattgctc ctatatcgat attggataaa tttactccag cgttagcaaa agcaaataaa
     2341 ggtaaaataa taaaagcaat ccaaaatttt aagctttcat aaatttcttc taaaaatgct
     2401 tccccatttt tagtttgcat cggtataaaa aatgctgtta caattccagc taaagttgca
     2461 tgtactccac tttttaaaac actaatccaa agaataactg agcaaataaa ataaaaagac
     2521 tttcttgtta tccctaaaag atttaaaata agcattacca aaatagcaag tcctgcaatt
     2581 acaaaagcag ctattgataa ttttgtcgta taaaaaatag ctataattaa aatagcaccc
     2641 acatcatcaa aaatagccaa agaaagtaag aaaattttta aacttgatgg aatgtgcttg
     2701 ccgcacatca ttaaaatcgc taaggcaaac gctgtatctg tagctgtagg tattgcccaa
     2761 ccttttaaag tataagcatc tcctatattc accaaagcaa acaacattgc tggtataagt
     2821 atacccccta acgcagccat aaaaggcaaa acaatatttt taggattttt aaaatctccg
     2881 tgcaaaaatt ccttcttaag ctcaagccct atagcaaaga aaaatataga tataagccca
     2941 tcatttatcc aaagtaaaaa aggcttgtta agctcaaatt cacctacact aaatccgact
     3001 tttaaattta gaaattctcg ataatgttcg ctaaaagacc cgttttgcac aagcaaagca
     3061 agcaaagtgc aaactataag taaaacgccg ccaaaagcct catttaaaac taaagttttt
     3121 aatttatgta ctatattatt catttaacaa tcttaagata aataaaacca acaatggcac
     3181 ttaaaaaact agctactaaa atagcaagtt tatccgcata ttcaaaaata tcactatttt
     3241 tataagccaa accatcaata aacaagctca tcgtaaaacc gatgcctgtt aaaatacata
     3301 taccataaaa ttttccatat ttaatatttt caggtaattt tgcaagttta agtttgatag
     3361 caataaaaca aaaagtgaaa acacctaatt gttttcctaa aaatagtcct aaaataatcc
     3421 caagacttac aggagaaaat actgaaccaa gatgcatatc tctaatatca attccagcat
     3481 tggcaaaagc aaataaaggt aaaataaaat aaactaccca aggatttaaa tccttaagaa
     3541 cttcatgtaa ataaggtttt ttattttttg tatcaagagg tataaacaaa gaaatgatca
     3601 caccagccaa agttgcatgc actccacttt taagcatagc tatccacaac acaacaccta
     3661 ccaacacgta caaagaaaga tgggtgatgt gataataatt taacaaaagc agagcaaata
     3721 tacaaaacaa acaaataata attgctaaag ctgaaagctg atctgtataa aacaaagcaa
     3781 taataacaat agcacccaaa tcatcaaaaa tagctaaaga gagtaaaaaa agttttaaac
     3841 ttgtaggaat tttatttccc aaaagcatta aaatacccac tgcaaaagct atatcagttg
     3901 ctgtaggtat tgcccaacct ttcatagcaa aatcatgaga ataattaata gcaataaaaa
     3961 ttaaagccgg agtaatcata ccccctaaag ctccaaatat aggtaaagat acagctctta
     4021 tatttttaag ttgcccacgt aaaatttcat attttaactc aagccctata catagaaaaa
     4081 atatagctat caaaccatca tttatccata aatccaacga ttttgaaatt tgaaaatgat
     4141 caaatcctac tgtaaaatta gcatgaaaaa aatctgtata aataacactt aaagaagaat
     4201 ttttacataa taaagctaaa aatgtaaaaa atataagcaa aataccaggg aaagtttcac
     4261 ttaaaaccat cttctttatc atttgcatcc ttgctcctaa gtaaatattt gtaaaaattt
     4321 aatacgataa ataaaatggt aaaattataa cgaaaaaata ctaaagaaat aattatttaa
     4381 aaaaacaagc ccaagatacc aaaaagttct taagcttgtt cttaagatat ttaagcgtaa
     4441 atatccaaac cactagagct agaagcttgt ggagcggagg cttgagagac accttccata
     4501 ccttcgatga gttcattcat caatgcctcg tttgtgtcca tagatttttt caaaactgaa
     4561 gtattaacag cagtcattaa attaacatta cccatagaaa catctgaaac catacatcct
     4621 ccttttagat tgagtcttaa gactttattt aaattcggat gatattttta aaacttaata
     4681 ttttttacta aactttttaa aatttttcaa gggaaccaat atctgaaatt aaaaatcata
     4741 aattttttaa gat
//
LOCUS       DAPIWQ010000123         4519 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.125, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000123 DAPIWQ010000000
VERSION     DAPIWQ010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4519
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.125"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            98..1080
                     /locus_tag="RJ267_001481"
                     /pseudo
     CDS             98..1080
                     /locus_tag="RJ267_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881065.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
     gene            complement(1115..1756)
                     /locus_tag="RJ267_001482"
     CDS             complement(1115..1756)
                     /locus_tag="RJ267_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HDV7389322.1"
                     /translation="MRNFFCKFVLALVFYSSFALANNSFITLNPSLPSSENSVIEAFS
                     YKCIHCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEFSKEMNELFTFAQYKDEQNG
                     KDASYSDSLSHKLADVYFVSYFLNKQRNFSNLDEFYDIGLKAMNVNKNEVLNFLNTPK
                     AKEILSEFQRANDIAKTYGTPAFVVNGKYQINPSAINSMQDLEDLVKKLSNMK"
     gene            complement(1840..3276)
                     /locus_tag="RJ267_001483"
                     /pseudo
     CDS             complement(1840..3276)
                     /locus_tag="RJ267_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315485.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
     gene            complement(3312..4112)
                     /gene="dsbI"
                     /locus_tag="RJ267_001484"
     CDS             complement(3312..4112)
                     /gene="dsbI"
                     /locus_tag="RJ267_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HDV7389323.1"
                     /translation="MSCIKMKDKCRNFSLSKWQDTRKPWLILIIVTIGLTCIAHFLFQ
                     EYLFMKPCEQCVYIRFDMLVMAIGGMIALINPANNIIKIFSYSLAFYGIWLGLEHCLT
                     LNHIHEVVHSENPFAGVDGCREIPIYPFNLPLYKWASSWFLPTGECGMDTPVVPENAY
                     NHLNAFQKFFIGTPPDFENGLYSNGWYLIPSLKFMNMAICCLIAFLCCFVVLFAMFIA
                     YVLDKNKPNAKIFALVIVALVLVLKFIGESKNPNQNIASLNQVVLRYS"
     gene            complement(4109..4468)
                     /locus_tag="RJ267_001485"
     CDS             complement(4109..4468)
                     /locus_tag="RJ267_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide isomerase"
                     /protein_id="HDV7389324.1"
                     /translation="MKFPVKLARSIVVCAFLAGISASALSEGKEYVILKNPIANADNY
                     SVGLKAMNVSKADFENFLKTPEAAELLKSYEIANPISQNYGTPAFVVNGKYQIVPSAI
                     NSPEALIEITKELSKQK"
BASE COUNT         1570 a          772 c          658 g         1519 t
ORIGIN      
        1 gcttttttct taaaatgtaa ttaggtttta ttgacttttt ctaaataaag tcttatactg
       61 aatttaaatt acgcaaaata aggaggaaaa ttgatgaata aatttttcta tagttttaac
      121 tttgttgtta tatggaagtt gtgctttagc cttagatcca aatttggaaa aaaccaagag
      181 tgcaacaggt attgacctgc ctactgctaa atggaatttg cctaaggcat taaatgaaga
      241 tggcactata gatgaaacta agatgccaaa aaattcagaa tatagcaaaa tggttatttt
      301 aggaaataaa attcttaatg aaacaagcaa atatgtgggt ccacaggcca aagatcctaa
      361 aaaaagattt gcgggaaata atctttcttg ttcaagctgt catgctaatg gtggaagtgt
      421 gcaaaatcaa tcgggttttg taggaatttg ggcaagattt ccacaatata atgccagagg
      481 agataaagta attaccttag cagataggat caatggctgt tttgaacgct ctatgaatgg
      541 caaaagaatg cctagtgatg cgcctgaaat gaaagccatg ctaacttata tgcaatggtt
      601 atctcaagga gttccagtag gagctaagat agaagggtag ggacttaaga aaatagattt
      661 catctcaaga gcagctgatc ctaaaaaagg caaggcaatt tatatggata aatgtgccgt
      721 ttgtcatcaa gaaaatggat taaggcttaa aaatgaggat agcacagggg cgtattatct
      781 ttatccacca ctttggggtg atgatagtta taatacagga gctggaatgt atcgtctatc
      841 aaagctgctt cttatattaa agaaaatatg cctcaaggtg cgcctgactt aagtcttgaa
      901 gatgcttatg atgtagcagc ttacatgaat tcacaagctc gtcctattaa agcaaataga
      961 aataaagact ttccagatag aaagattaag cctttagata tggatgtagg accttatgat
     1021 gatatctttt ctacaaccca acatcgctat ggaccttata caaatatgat caaaaaataa
     1081 tttttaaggc aatttttatt gccttaaaaa tttattattt catattactt aattttttaa
     1141 ctagatcttc taaatcttgc atcgaattga ttgcgcttgg gttaatttga tattttccat
     1201 taacaacaaa agcaggggta ccataggttt tagctatatc attagctctt tgaaactcgc
     1261 ttaaaatttc tttagctttt ggggtattta aaaaatttaa tacttcattt ttatttacat
     1321 tcatagcctt taaacctatg tcgtaaaatt catctaaatt tgaaaaattt ctttgcttgt
     1381 ttaaaaaata agaaacaaaa taaacatcag caagtttatg agataaacta tcagaataac
     1441 tcgcatcttt accattttgc tcatctttgt attgagcaaa ggtaaaaagc tcattcattt
     1501 ctttggaaaa ttccccattc attaaactta caggatagag tttaaaatgt aaatttggaa
     1561 aagcttctct cagtttttca agagttccaa atttatgatg attataacaa tgtatacatt
     1621 tataagaaaa tgcttctatt acactatttt cagagctagg taaacttgga ttaagggtaa
     1681 taaaactatt gtttgctaat gcaaaacttg aataaaatac aagagctaaa acaaatttgc
     1741 aaaaaaaatt acgcatatta tatccttggt taaataaaat tttcaaagat aattttattt
     1801 aaaaaaaata aataaaccca aaaataaatt tgggcttatt tattttttag gattgaatgc
     1861 ttgatcaaca ctaaaaggca ttgcttgata atccgtgcct gaaccgctga attgaatttg
     1921 aaccgaaggc tccttagcgc cccagttaaa ttcatcaatt ttaggttttg gttctccaag
     1981 acttacacct ttactaagat taaaagccat tccagcgttg cactataaac cataatagaa
     2041 tctttatctg gttcatattg agttaaagaa gttacaggat aaaaccattc attgccattt
     2101 ttatctacag gttgcaataa atatttttga aattctttat tccacccttt atatgcgccc
     2161 aattcctacc tatacctgct atatctccaa atttgtcgct ttcatccatt ttggcaagct
     2221 cttcatcgct taaagtttta cccactttac ttgcatctat atttaaacac actgcacttt
     2281 gatctaaagt tttgataata gtacttctat aaggatctaa aatcttatac aatctccaat
     2341 catcaacaac attaccattc tcatctactt ctataatagt atcacacact gtgcgtacat
     2401 gcttactatc ttggacgcaa agtatttgtt gaagaaataa tgcccatttt ttgcatattg
     2461 tccatagcat gagaaaaaat ctatatagac agcaggtaat ttgcgattga aaatttctct
     2521 tcccagacat cgtattttac atatctttga ccaaatcccc aagttaaagc tccatctttg
     2581 ttttgacgaa aacttatcat aattccacga ttgtaaatat taccccagtt cattagttta
     2641 ttgttatcat aataccatct gatttcaccc ttggtatctt ataataaaga catttgaatt
     2701 ttcatcccat tccatagcac cacctacaag attattccat acagattatg agtctttgcc
     2761 agattatttt ccaggagcat tatttactaa atatagccta tctgaaaatt ttggatccat
     2821 ttttaatact ttcacatttt caaaaagagt tcctctttga tcagtgcctt ccgcttggct
     2881 ctatgctagc ccatggagtt gtaattttat aaatctcatc aatgactttt tgacttttac
     2941 catttgcggt tttagtataa cttaccttta ctataagaag gataaagtcc aaaaatagga
     3001 attccaccat acgtcttagc cattttagaa ttcacattat taagaaatag tttgaccatt
     3061 tgattttttt atatcgctta agacataacc attattcatg ataatagcgg tcaaaggaga
     3121 caatccataa ggattcattt taatcatacc catttgtcct tgaatttgcc aatctatttt
     3181 cactctacta ggaccaccca tggccattaa agcattaggt gcaagtaggg tagaacccgc
     3241 caaaattgcc atgcaaagag ttttgctaag tctcatgatc aatcctttaa aattatttaa
     3301 gacatcctat tttaagagta tcttaaaacg acttgattta aactagctat attttgattc
     3361 ggattttttg attcgcctat aaatttaagc accaaaacca aagcaacaat caccaatgca
     3421 aaaattttag cattaggttt atttttatct aaaacatagg ctataaacat tgcaaaaagc
     3481 acgacaaaac aacataaaaa tgctataaga cagcaaattg ccatattcat aaactttaaa
     3541 ctaggaatca aataccaacc attactataa agcccatttt caaaatcagg tggagttcct
     3601 ataaaaaatt tttgaaaagc attgagatga ttataagcat tttctggaac tacaggggta
     3661 tccatcccgc attctcctgt tggcaaaaac caactagaag cccatttata caaaggtaaa
     3721 ttaaatggat aaataggaat ttcacgacat ccatctacgc ctgcaaaagg attttcagaa
     3781 tgaaccactt catggatatg atttaaagtt agacaatgct ccaagccaag ccaaattcca
     3841 taaaaagcta agctataaga aaaaattttt ataatattat ttgcagggtt gattaatgca
     3901 atcataccac ctatagccat aacaagcata tcaaatctta tatacacaca ttgttcacaa
     3961 ggtttcataa aaagatattc ttgaaataaa aaatgtgcta tacaagtaag tcctatagta
     4021 actataatca aaatcaacca aggtttgcgc gtatcttgcc atttggaaag tgaaaaattt
     4081 ctgcatttat ctttcatttt tatacaactc atttttgctt gctaagttct ttagtaattt
     4141 caatcaaagc ctctggagag ttgattgcac ttggaacgat ttgatatttt ccattaacaa
     4201 caaaagcagg ggtgccataa ttttgcgaaa taggattggc aatttcataa ctttttaaaa
     4261 gctctgcagc ctctggagtt tttaagaaat tttcaaaatc agctttactt acattcattg
     4321 cttttaaacc gacactataa ttatcagcgt tagcaatagg atttttaaga attacatatt
     4381 ctttaccttc acttaatgcg ctagcactta tacctgctaa aaaagcacat acaacaatag
     4441 atcttgctaa ttttactgga aatttcatta ccctctcctt gaaatttggt tttgataaaa
     4501 ctttttatta agtttttat
//
LOCUS       DAPIWQ010000124         4492 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.126, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000124 DAPIWQ010000000
VERSION     DAPIWQ010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4492)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4492)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4492
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.126"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            18..752
                     /gene="blaOXA"
                     /locus_tag="RJ267_001486"
     CDS             18..752
                     /gene="blaOXA"
                     /locus_tag="RJ267_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase"
                     /protein_id="HDV7389325.1"
                     /translation="MFGQDKILNNWFKEYNTSGTFVFYDGKTWASNDFSRAMETFSPA
                     STFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSSAIKYSNVLAFKEV
                     ARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAILLFRLSQNSLPFSQ
                     EAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDENKYKAFALNLDIDK
                     FEDLYKREKILEKYLDELVKKVKNDG"
     gene            complement(837..1721)
                     /locus_tag="RJ267_001487"
     CDS             complement(837..1721)
                     /locus_tag="RJ267_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HDV7389326.1"
                     /translation="MIRIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(1718..2392)
                     /gene="modB"
                     /locus_tag="RJ267_001488"
     CDS             complement(1718..2392)
                     /gene="modB"
                     /locus_tag="RJ267_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDV7389327.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKSKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYSLAHQYAFILFIFSFLVLFSLYFIN
                     KKMSFQ"
     gene            complement(2385..2786)
                     /locus_tag="RJ267_001489"
     CDS             complement(2385..2786)
                     /locus_tag="RJ267_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HDV7389328.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSVLMLELKSLENLKI
                     GVSVELLFKEHELCFSASKTLLSVENSFLAKITKIKKGKLLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(2783..3532)
                     /gene="modA"
                     /locus_tag="RJ267_001490"
     CDS             complement(2783..3532)
                     /gene="modA"
                     /locus_tag="RJ267_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDV7389329.1"
                     /translation="MKKFVVFFGILLFVSCLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGVENLKEKANKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAVIIDAKYFSPLEQSYVITKY
                     AKDKKLAFEFNEFIGSSKAKEIFKKYGFSTP"
     gene            complement(3583..4269)
                     /gene="bioC"
                     /locus_tag="RJ267_001491"
     CDS             complement(3583..4269)
                     /gene="bioC"
                     /locus_tag="RJ267_001491"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HDV7389330.1"
                     /translation="MNFLKAKDYEKHAKVQDFMGLKLCEILKNLRISHFEKVFEFGCG
                     RGELSKKLQNFITFDEYLKNDILDFKENSSILIFDMNEIAKQDLSKEKFDLIVSNATL
                     QWLDLKRIIPSLRDMLNQNGILLLSTFAEQNLKEIKQSTGFGLNYFSLNELEQIFKVY
                     FNEVKITQELIKLSFDNALDVFRHLKLSGVNSLGFYPLNKGFLKEFEEKFQNKLTYHP
                     VFILCKNDIK"
     gene            complement(4266..>4492)
                     /locus_tag="RJ267_001492"
     CDS             complement(4266..>4492)
                     /locus_tag="RJ267_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF452 domain-containing protein"
                     /protein_id="HDV7389331.1"
                     /translation="DFIFKDEKALKIELEKLFDFALVKQEENLLWDKVYSSKKDEIFP
                     PNALKNAFSKLIFLNEPHFAFFHFKTWDEL"
BASE COUNT         1666 a          683 c          570 g         1573 t
ORIGIN      
        1 tacttttctt aaatttagtg tttgggcaag ataagatatt aaataattgg tttaaagagt
       61 ataatacaag cggcactttt gttttttatg atggaaaaac ttgggcgagt aacgactttt
      121 caagggctat ggagactttc tctcccgctt ccacttttaa aatttttaat gctctaattg
      181 cacttgatag tggtgtgata aaaactaaaa aagaaatttt ttatcactat agaggtgaaa
      241 aagtattttt atcttcttgg gcgcaagata tgaatttaag ttcagctata aaatattcta
      301 atgttcttgc ttttaaagaa gtggcaagaa gaattggtat caaaactatg caagaatatt
      361 taaacaagct tcattatggt aatgctaaaa tttccaagat cgatactttt tggcttgaca
      421 actcactaaa aataagcgct aaagaacaag caattttgct ttttagactt tcacaaaata
      481 gcttaccttt ttctcaagaa gcaatgaata gtgttaagga aatgatttat ttaaaaaata
      541 tggaaaattt agagcttttt ggaaaaacag gttttaatga tgagcaaaaa attgcttgga
      601 ttgtaggttt tgtgtattta aaagatgaaa ataaatataa ggctttcgcg ctaaatttag
      661 atattgataa atttgaagat ttatataaaa gagaaaaaat tttagaaaaa tatttagatg
      721 aacttgtaaa aaaagttaaa aatgatggct agtgagtatt tcgtaaaatg caaaaatact
      781 taattgtatg atttgcgtac acttaaagta ctcattaaaa aattaaattt ttgctcttat
      841 ttatcaagtt ttcctacgat gatagggtta aaggctttta tggatagcaa aagcgtatcg
      901 ccgattttta catcttgata agcttttaga aattcctctt cactaagagt gattttaata
      961 atatcttgat ttaaaagcaa ggttaaaacc actaaaatat cacttttttt aatttctagc
     1021 aaagttgcac ttaagcgtaa ttttgcgctg atatttgaat gagtaaaaaa ttcattttta
     1081 ggaaaatctt taataatttt tccgttttta agctctaaaa ttctatgact taacttataa
     1141 atttcagcta gatcatgact taccaataaa gtacttattt taaaatactc taaaatcttg
     1201 gttaattcat cttgtaaatt ggcacgcatt ttaaaatcca aagcactcaa aggttcatct
     1261 aaaagcaaga tttttggttc tcttgctaaa gctcttgcta aagctactct ttgtgcctgc
     1321 cccccactta aatgtttagg ataaatttta gctaaatttt caagcttcat taaggctaaa
     1381 agctcgctaa cctttgcttt agaactagcg gcataggcga tgttttcttt tatattcata
     1441 tttggaaaaa gcgcataatc ttgaaaaaca aaaccaattt ttcttttttg taaagctaaa
     1501 ctaaaatttt ttgaagaatc aaaccaaagt tcattatcta cttctatacg ccccaattta
     1561 ggctttataa gtcccgctat gatttttaaa agagtggttt ttcctgctcc actttcgcca
     1621 aaaagtgcag taatttttcc tgattctata tcttttttaa aatttaaatc cagtcttcct
     1681 ttagcggtat tcataggatg attgatatca attcttatca ttgaaaactc atttttttat
     1741 tgataaaata aagactaaaa agtactaaaa aagaaaaaat aaacaatata aaagcatatt
     1801 gatgggctaa gctatagttt aagatttcaa gttcatcata aatagctata ctagccacta
     1861 aagtttcacc ttgtttatgt cctcctatca tcatcacgac tccaaattca cccacagtat
     1921 gggcaaaact catcgcacaa gcactaaaaa ttcctgcttt agaattaggt aaaatcactc
     1981 taaaaagagt ataaatttta cttttaccta aactataaga agcatcgagc aaatttggat
     2041 tgatcgatga aaaggcactt tgcaaaggat ttaccataaa aggcaaagaa aaaatcaaag
     2101 aagcaaaaac aagaccttca aaactaaaaa ccaaagaaag attaaaatat tcttttaaaa
     2161 cttgccctaa aaaactatta gccgaaaaag ttacaagcaa ataaaatccc aaaacactag
     2221 gaggtaaaat caaaggcaag gaaataaagc tttgaaggat tgttttaaaa ggaaaacgca
     2281 caaaacttaa caaataagct aaaaaaacac cgataaaaaa aaggataaaa gtcgtgataa
     2341 aagcaagttt aaaagtaaga taaagggttt gtaaaaaagc tggatcaagc actatgactc
     2401 cttaatacaa tatcatttgc ttttacaaaa caaagccatt cttgattttc acaaatttca
     2461 agttctaaag ctttttcttt ggtgataata ctagaaagtt cattaccttt aaaatcaaaa
     2521 aatacctgat ataaaagttt gcctttttta atttttgtaa ttttagctaa aaaagaattt
     2581 tcaacactta aaagagtttt gcttgcgcta aaacaaagct catgctcttt aaaaagaagt
     2641 tctacactca caccaatttt taaattttct aaagatttta attcaagcat taaaacacta
     2701 aaaatcactt ctttagaaag tattttaaca ataactatat cctcttgatt taaaagctca
     2761 caaatttgtc cttttataag gttcatggtg tgctaaatcc gtatttttta aaaatttctt
     2821 ttgcttttga agagccaata aattcgttaa attcaaaggc taatttttta tccttagcgt
     2881 attttgtgat gacataactt tgctctaaag ggctaaaata ctttgcatca attataacag
     2941 ccttaccctt aggatgattg atagaagaaa ctaaagaata agccactata gctatatctg
     3001 aatttttgct atctacatgt aaaacaggca ctgagatatt ttcgcctaaa acgattttat
     3061 ccttaagaag ctcatttaaa cccaaatttt caagcacttc tttagctgct actccataag
     3121 gagctacttt aggattggct atgcttagat gcgtgatttt gtttgccttt tcttttaaat
     3181 tttcaacgcc tccttggagt aaattttcat ccaagctata caaagccaaa actcccaaaa
     3241 cataaacttt tggttttatt aaagcatttt tatcatcata aatagcctta gcatatttag
     3301 tatccgctga aaaaaagaga tcaaattctc ttccttgttt taaaagctca taatattttc
     3361 cagaagcacc aaaaaccaat tctattttat cttctggatg tgttttcaaa aactcatctt
     3421 taacttcact catcgccttt gaagctgaag aagctacaaa aatacttaaa ttttgcgcat
     3481 ttaaacacga aacaaaaagc aaaatcccaa aaaatactac aaactttttc atttagtttt
     3541 ccttgtgtaa aaatttaatt tttggattat aacacaaaaa attcatttta tatcattttt
     3601 gcataaaata aatacaggat gataagtgag tttgttttga aatttttctt caaattcttt
     3661 taaaaaacct ttatttaaag gataaaatcc taaagaattt actccgctta attttaaatg
     3721 tctaaaaaca tctaaagcat tatcaaagct taattttatg agttcttgag taatttttac
     3781 ttcattaaaa tagactttaa aaatttgctc taattcattt aagctaaaat aatttaaacc
     3841 aaaacccgtg ctttgcttga tttcttttaa attttgctct gcaaaagtag aaagaagtaa
     3901 aatcccattt tgatttagca tatctctaag acttggtata atgcgtttta aatcaagcca
     3961 ttgcaaagtt gcatttgaaa caataagatc aaatttctct ttacttaaat cctgttttgc
     4021 aatttcgttc atatcaaaaa ttaaaatact agaattttct ttaaaatcta aaatatcgtt
     4081 ttttaaatac tcatcaaaag taataaaatt ttgaagtttt ttgctcaatt cacccctgcc
     4141 acaaccaaat tcaaatactt tttcaaaatg tgaaattctt aaatttttta aaatttcaca
     4201 aagttttaaa cccataaaat cttgcacttt tgcatgtttt tcataatctt ttgcttttaa
     4261 aaaattcaaa gctcatccca agttttaaaa tgaaaaaaag caaaatgcgg ttcatttaaa
     4321 aaaataagtt ttgaaaaagc attttttaaa gcatttggtg gaaaaatttc atctttttta
     4381 cttgaataaa ccttatccca aagcaaattt tcttcttgtt ttactaaagc aaagtcaaaa
     4441 agtttttcaa gctctatttt taaagctttt tcatctttaa aaataaaatc tt
//
LOCUS       DAPIWQ010000125         4490 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.127, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000125 DAPIWQ010000000
VERSION     DAPIWQ010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4490)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4490)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4490
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.127"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            27..992
                     /locus_tag="RJ267_001493"
     CDS             27..992
                     /locus_tag="RJ267_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HDV7389332.1"
                     /translation="MINDVSLEIKKGEIYAIVGHSGAGKSTLLRCINGLENYQEGSLK
                     VFDQEIKDLSQKKSKELRMLRKDIGMIFQNFALMERKNVFENVAMPLRTHYTQCKFHA
                     KLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQRVAIARALALNPKIL
                     LSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVKDIAQKALLLEHGQII
                     GSGAIDELFLRPNAKMKEFLGESDFLPEHGLNIKLYFPKEVAQNSVITHMARTLNIDF
                     NIVWGKIEKLNGKALGNLVININEKDKDKVLDYIEKSGVLWEVAS"
     gene            989..1900
                     /locus_tag="RJ267_001494"
     CDS             989..1900
                     /locus_tag="RJ267_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7389333.1"
                     /translation="MNEENISIVSAFFSRISQFFNEFSWQDIKEVSLSSITSFNENYE
                     NILKPALNETIYMSLMAVLFGFLLAIIPGILLAIWDKNGIKENKIAYSILDFITNILR
                     AFPFLILIVVLLPLSKIIVGTSIGTNAAIVPLAIGIAPYLAKMLESAFKEIDKGIIEA
                     AKSYGASNIQIIFKVIFSEALPAIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYG
                     YERFNKEVMIQTVVILLILVQLVQILGNLFYTWAKNSKTTYIIATLLILLGVSIVINI
                     NNDENFFWQVIVFILFLGSLLYKGFKK"
     gene            2090..2863
                     /locus_tag="RJ267_001495"
     CDS             2090..2863
                     /locus_tag="RJ267_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7389334.1"
                     /translation="MKIKSLFIASILTLSLNANALETITVAATPVPHAEILEQVKPDL
                     EKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAIHIE
                     PMAVYSKKYKSLDDIKEGVKIAIPNDPTNESRALDIIAKKGLVKFKDKALKTPLDIID
                     NPKKIKFVELKPAQLPRALNDVDFAVINSNYALSANLNPAKDSVFIEDKESPYANILV
                     VRVGHENDPKIKALIQALQSDKIKQFIIEKYNGSVLPAF"
     gene            2912..3682
                     /locus_tag="RJ267_001496"
     CDS             2912..3682
                     /locus_tag="RJ267_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7389335.1"
                     /translation="MNLFKIIILACILNLSSLFAQNITIGATPNPFGSLLELMKDDFK
                     NKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAP
                     VGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKN
                     PKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKNSPYVNYVVV
                     RSEGKNSEKTKVIDEILRSDKFKAIINEHYKDILIPAF"
     gene            3692..4468
                     /locus_tag="RJ267_001497"
     CDS             3692..4468
                     /locus_tag="RJ267_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7389336.1"
                     /translation="MNIKKIFLSVLFTISLSFGADKTIIIGATPTPYAEILNFSKPLF
                     QEKGWKLIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTKLSSLGAIVLV
                     PMAIYSNSIKDIKDIPNGAKIAIPNDATNESRALDLLAKANLIEFKSQSTLKTPIDIS
                     KNPKKLKFIELKAAQLPRALNDTDLAIITTNYALGAGLNPLKDGIFMEDKDSLYAIVL
                     ATRKGEETSQKSLVIKEILTSDKIKNFIIEKYKGSVIPTF"
BASE COUNT         1710 a          655 c          711 g         1414 t
ORIGIN      
        1 taaaaaaata ttatggcaag gaactcgtga taaacgatgt ttctttggag attaaaaagg
       61 gtgaaattta cgccatagta ggtcatagtg gagctggaaa atccactctt ttaagatgta
      121 ttaatggact tgagaattat caagaaggaa gtttaaaagt ctttgatcaa gaaattaaag
      181 atttaagtca aaaaaaatca aaagagttaa gaatgcttag aaaagatata gggatgattt
      241 ttcaaaattt tgccctaatg gagcgcaaaa atgtatttga aaatgttgct atgcctttaa
      301 gaacacacta tactcagtgt aaatttcatg ccaagctttt taataaagaa tacatgagcg
      361 aaaaagaaat tgcccaaaaa gtcaattcct tacttgaaat cgtagggctt gatcataaaa
      421 acaaatccta cccaagagaa ctgagcggag ggcaaaaaca acgtgttgct attgctagag
      481 ccttagcttt aaacccaaaa attttactta gtgacgaagc tacttcggct cttgatccaa
      541 acactacaaa aaatatttta gagcttatat ctaaaatcaa tgctgaattt gggattactg
      601 ttgttttagt aactcacgaa atggatgtgg taaaagacat agctcaaaaa gctttattac
      661 ttgaacatgg acaaatcata ggaagtggag caattgatga gcttttttta aggcctaatg
      721 ccaaaatgaa agaattttta ggagaaagcg acttcttgcc tgagcacgga cttaatatca
      781 aactttactt tccaaaagaa gttgcccaaa atagcgtcat cactcatatg gcaagaactc
      841 taaatataga ctttaacata gtttggggta aaatagaaaa actgaatgga aaagccttgg
      901 gaaatttagt tataaatata aatgaaaagg ataaagacaa ggttcttgat tacatagaaa
      961 aaagtggagt attatgggag gtggcatcat gaatgaagaa aacatctcta ttgtcagtgc
     1021 tttttttagt agaatttctc aattttttaa tgaattttct tggcaggata ttaaagaagt
     1081 gagtttaagt tctatcacga gtttcaatga aaattatgaa aacattttaa aacctgcact
     1141 taatgaaaca atttatatga gtttaatggc tgtactattt ggatttttat tggctatcat
     1201 tcctggaatt ttacttgcta tttgggataa aaatggaatt aaagaaaata aaatcgctta
     1261 tagtatttta gattttatta ccaatatatt acgcgccttt ccatttttaa ttcttatagt
     1321 tgttctttta ccactttcta aaatcatagt aggcacaagc ataggtacaa atgctgccat
     1381 agttccttta gctatcggaa tagctcctta tttggcaaag atgcttgaaa gcgcttttaa
     1441 agaaatagac aaaggaatta tagaagcagc aaaaagttat ggtgctagca atattcaaat
     1501 tatcttcaag gttatcttta gtgaagccct tcctgctata attagcggaa ttaccctaac
     1561 tttgatcttt accattggtt tttctgctct tgctggaact gtcggtggtg gaggattagg
     1621 agatgtagct attcgctatg gttatgaaag atttaacaaa gaagttatga ttcaaactgt
     1681 agttatttta cttatattag ttcaattagt tcaaattcta ggtaatttat tttatacttg
     1741 ggctaaaaat agtaaaacta catatatcat tgccactcta ttgattttac ttggagttag
     1801 tatagttatc aatataaaca atgatgaaaa tttcttttgg caagtaattg tttttatctt
     1861 atttttagga agtttgcttt ataaaggttt caaaaaataa ggagattata tctcctttta
     1921 agataaatat aagttttttt aagtaaaatt taaaaaaaat taaaggaatt aaaatgatgt
     1981 atcagatgcg ttaatctgac tatcaacaag tttttatatg cttcttcctg atagtcagag
     2041 tgaatttatt aagattaaag caagcacaaa atgactaaaa aggaaaaaaa tgaaaatcaa
     2101 atctttattt atagcaagta ttttaacatt aagtcttaat gcaaatgcat tagaaaccat
     2161 cacagttgca gcaactcccg tccctcatgc tgaaatccta gaacaagtaa aacctgattt
     2221 agaaaaacaa ggctataaac ttgaaatcaa agaatttacg gattatgttt tgcctaatct
     2281 agctgttgat aacggagaag ccgatgcaaa ttttttccaa catactcctt atttggaaga
     2341 atttaataaa aacaaaggca ccaaacttat caaagtagct gccatacaca tagaacctat
     2401 ggctgtttac tccaaaaaat acaaaagtct agatgatatt aaagaagggg ttaaaatcgc
     2461 cattccaaat gatccaacca atgaaagtag agctttagat attattgcaa aaaaaggttt
     2521 ggtaaaattt aaagataagg ctttaaaaac acctcttgat attatagaca atcctaaaaa
     2581 aattaaattt gtagaattaa agcccgcaca acttccaaga gctttgaatg atgttgattt
     2641 tgctgtaatt aattccaact acgctctctc tgcaaatcta aatcctgcaa aagatagcgt
     2701 atttatcgaa gataaagaaa gcccgtatgc aaacattctt gttgtaagag tgggacatga
     2761 aaacgatcca aaaatcaaag ccttaatcca agctctacaa agtgataaaa tcaaacaatt
     2821 tatcatagaa aaatacaacg gatctgtttt acctgctttt taattttgtc ccttacctag
     2881 ggactttttt cttaagtaca aaggagtttt tatgaattta tttaaaatta ttatactcgc
     2941 ttgcattcta aatttatcta gcctatttgc acaaaacatt actataggag ccactccaaa
     3001 tccttttggt agcttactag aactaatgaa agatgatttt aaaaacaaag ggtatgagct
     3061 taaaatagta gaattttcag actatatttt gcccaatcgt gcattagagg aaaaagaact
     3121 tgatgcaaat ttatatcaac acaaaccttt tttagaagaa tacaacctaa aaaaaggttc
     3181 aaatttaatt gcaacaacgc ctgtacttat agctccagta ggagtttata gtaaaaaaat
     3241 caaaaattta gaaaatctta aagaaggtgc tagagttgct atacctaatg atgcgaccaa
     3301 tgaaagcaga gctttagagc ttttagagaa agcaaaatta atagagctta acaaaaatac
     3361 tctaaaaacc ccattggaca taaacaaaaa tccaaaaaaa cttaaattta tagaacttaa
     3421 agccgcacaa cttccaagag ctttagatga tgttgatatt gctataatta attctaattt
     3481 cgcacttgga gccggtctga atccaagtaa agatactatt tttagggaag ataaaaatag
     3541 cccttatgta aattatgttg tggtacgctc agaaggtaaa aatagcgaaa aaaccaaagt
     3601 aattgatgaa attttaagaa gcgataaatt taaagccatc attaatgaac attataaaga
     3661 tatattaatc ccagcttttt aggagtataa tatgaatatt aaaaaaatat ttttaagtgt
     3721 tttatttaca attagcctta gttttggggc agataaaacc ataatcatag gtgcaacacc
     3781 aacgccttat gctgaaattt taaatttctc taaaccctta tttcaagaaa aaggttggaa
     3841 gttaatagtt aaggaattta atgactataa tatacctaac atcgctttaa atgaaaaaga
     3901 tttagatgca aatttatatc agcataaacc ttttttagat gattttaata cccacaaagg
     3961 aacaaaatta agttctttag gtgctattgt tttagttcct atggctatat attctaactc
     4021 cataaaagat ataaaagaca ttcctaatgg tgctaaaatc gctataccta atgatgctac
     4081 caatgaaagc agagctcttg atttactagc taaagcaaat ttaatagagt ttaaaagtca
     4141 aagcaccctt aaaaccccta ttgacataag taaaaatcca aaaaaactta aatttataga
     4201 gcttaaagcc gcacaacttc caagagccct aaatgatact gatttggcta ttattaccac
     4261 aaactatgct cttggagcag gcttaaaccc tttaaaagat ggtattttta tggaagataa
     4321 agatagttta tatgctattg ttttagctac aagaaaaggt gaagaaacaa gtcaaaaaag
     4381 tcttgttatt aaagaaattt taacaagcga taaaattaaa aattttatca tagaaaaata
     4441 caaaggctct gttatcccta ctttttaact ctatacaaag ccttctaaag
//
LOCUS       DAPIWQ010000126         4285 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.128, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000126 DAPIWQ010000000
VERSION     DAPIWQ010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4285
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.128"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(38..787)
                     /gene="mreC"
                     /locus_tag="RJ267_001498"
     CDS             complement(38..787)
                     /gene="mreC"
                     /locus_tag="RJ267_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HDV7389337.1"
                     /translation="MKNKIFYVLVLAFLVFISFYYGGLIKQNVLRVNDFVIGNFYNIK
                     DYLGEKISEHFNQANQIQQLKARNKELEDIAVKVTSFANQLNRILEDQNSTKYLPQVS
                     LTRVISYVQLNDYKKLWLDWSKIPVGKNRGLIYQGYTAGIAINKNGRAMALLQGDDQC
                     VFSVYIGKSKAPGLIQGEDGRIVVKFIPKWAKINTGDEILTSGLDNIFFSDIPVGIVN
                     RVNDEDMYQSVEVKPYVKISIPAYLYVVDNL"
     gene            complement(777..1817)
                     /locus_tag="RJ267_001499"
     CDS             complement(777..1817)
                     /locus_tag="RJ267_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HDV7389338.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSKAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVRESALSAGAREVFLIEEPMAAAIGASLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNLIIGERTGEEI
                     KITIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGLDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            complement(1829..3052)
                     /gene="clpX"
                     /locus_tag="RJ267_001500"
     CDS             complement(1829..3052)
                     /gene="clpX"
                     /locus_tag="RJ267_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HDV7389339.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQD
                     DDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPRGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA
                     LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAI
                     DGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKDYDIVITKEV
                     VKDNAKALLIKRKIS"
     gene            complement(3045..3836)
                     /gene="lpxA"
                     /locus_tag="RJ267_001501"
     CDS             complement(3045..3836)
                     /gene="lpxA"
                     /locus_tag="RJ267_001501"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HDV7389340.1"
                     /translation="MKKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGIRRRFDKDEVDRLSRAFKTL
                     FRQGDLKENAKNLLENQESENVKKMCHFILETKRGIPVYRGKNNA"
     gene            complement(3836..4276)
                     /gene="fabZ"
                     /locus_tag="RJ267_001502"
     CDS             complement(3836..4276)
                     /gene="fabZ"
                     /locus_tag="RJ267_001502"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HDV7389341.1"
                     /translation="MIDVMQIQEILPHRYPFLLVDKITELKVKEVVLGYKNISISDHV
                     FMGHFPGHPIYPGVLILEGMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVR
                     PGDRLDYEMSVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
BASE COUNT         1372 a          914 c          482 g         1517 t
ORIGIN      
        1 aaaatataga aaatttttaa aaagtctaat ccttgactta taaattatca actacatata
       61 aataagcagg aatactaatc ttaacataag gctttacttc tacactttga tacatatctt
      121 catcattaac tctattcaca ataccgacag gtatatctga aaagaaaata ttatcaagtc
      181 cacttgttaa aatttcatct ccggtattaa tttttgccca ttttggaata aatttaacca
      241 caatcctgcc atcttcaccc tggattaaac ctggagcttt ggattttcct atataaacag
      301 aaaaaacaca ctgatcatca ccttgtaaaa gagccattgc tctaccattt ttattaatag
      361 ctatacctgc agtatatcct tgatatatca aaccacggtt tttaccaacg ggaattttgc
      421 tccaatctaa ccataatttt ttataatcat tcaattgaac ataagaaata actctagtta
      481 aagaaacttg aggtaaatat tttgtagaat tttgatcctc taaaatacga tttaattgat
      541 ttgcaaaact agttaccttt acagcaatat cttctaattc tttatttcta gcttttagtt
      601 gctgaatttg atttgcttga ttaaagtgtt ctgaaatttt ttctcccaaa taatctttaa
      661 tattataaaa attacctata acaaaatcat taacacggag aacattttgc ttaataagtc
      721 ctccataata aaaagatata aaaaccaaaa aggctaagac aagaacataa aaaatcttat
      781 tcttcattgg ttaattgttg caataatgaa atttcctcta aagctttacc tgttcctttt
      841 gctacagcta aaagcggttc atctgcgata taaactggca aacgtacaat ttcacttaag
      901 tatttatcaa gaccacgaat caatgctccg ccacctgtta aaactacacc attttctact
      961 atatcacttg ctaaatcagg cggcatcatt tcaagaacca tttttaaagc atcagcaatt
     1021 tcttttaaat actcacgcat cgcttctctt acatcttcgc ttgtaagttc aatacgactt
     1081 aaaagtccac ttacttgatc gcgtcctttt accaccatag aaagctcttt tggaagttgt
     1141 attgctgaac ctatagtgat tttgatctct tcgcctgttc tttcacctat gataagattg
     1201 tatttttctt ttacataatt aactatactc atatcaagct tatctccagc cgtacgaata
     1261 gactttgaaa tcacaagtcc acccaaagaa atcactccaa tctcagtagt tccaccccct
     1321 atatctacta ccaaatttcc tttaggctct tgtataggta aacttgcacc aatagctgct
     1381 gccataggct cttcaatcaa aaatacctct cttgcacctg cgcttaaagc actttctctt
     1441 accgcttttc tttctacttg agttaaacca taaggaacag aaatgataat tctagggcgt
     1501 aaaaaacttt ttctacggtg tgttttttct ataaaatagc ggatcatttt ttcagtcata
     1561 tcaaaatctg caatcacgcc atctttcata ggacgaatag cttcgatatt gcctggagtt
     1621 tttcccacca tatctttagc ttctttacct acggctaaaa tttttgcttt ggaaccatac
     1681 ctttctcttt caactgccac aacagaaggc tcatttatca ctataccctt atcttttacc
     1741 aaaactagcg tattagctgt tcctaaatca atccccatat cactagaaaa aaatcctata
     1801 agttgatcta atatcatttc tatccttttt aacttatttt tctttttatt aataatgcct
     1861 ttgcattgtc tttaacaact tctttggtta ttacaatatc atagtcttta tactctggta
     1921 actcaaacat taaatctacc atcatttctt ctataatact tctaagcccc ctagcccctg
     1981 tttttctctc caatgcaagt tgtgcgatag ctcttagagc atcttcttca aattttaaat
     2041 ttaccccatc aatagcaaaa agcttttgat attgcttaat aatggcattt ttaggttcag
     2101 ttaaaattct taccatatct tcttcattaa gctcatttaa agatgcaatc acatgcaaac
     2161 gacctataag ctcaggaatc aaaccaaaat gaaccaaatc atcaggttca attttctcaa
     2221 gtaaagcttt attttcttct tttgcatcat caaaaaaacc tacaacttta tctccaagtt
     2281 ttctttttaa gatagtttcc aaaccatcaa aagctccacc acaaacaaat aaaatatttg
     2341 aagtgtcaat ttgtataaac tcttgatttg gatgttttct cccccccctt ggtggaatat
     2401 ttaccaaact tccttcgata atcttaagta aagcttgttg cacaccctct ccacttacat
     2461 cacgagtaat agaacgattt tcactcattc tggcaatttt atcaatctca tcaataaaaa
     2521 ctataccttt ttgagctctt tgcacatctc catctgcagc ttgtaaaaga cgtgttaaaa
     2581 tattttccac atcctcacct acatatcctg cttcagttaa agaagttgca tcacaaattg
     2641 ctataggtac atctaaaaat ttagctaaag tttgcgccaa taaagttttt ccacttcctg
     2701 ttggcccaac aagtaaaata tttgacttaa aaagctctgt atcatcatct tgaagttcag
     2761 ctttaaaaag tcttttataa tgattgtata ctccaacact aaaaactttt ttagctctat
     2821 cttgtcctat gacataacga tctaaataag cttttaattc ttttggagtg atatctttaa
     2881 attctgtatt atgactttgt ttaggttctt taaattcttt ttcttctcca taaataatac
     2941 tataagcacc ttcaacgcaa tattcacaaa taaaagcatc atcattttca tttgctaaaa
     3001 ttcttctttg tggattctcc acttcattgc aaaaactaca ttttctaggc attattttta
     3061 cccctataga caggaattcc acgctttgtt tctaatataa aatgacacat ttttttaaca
     3121 ttttcacttt cttgattttc aagcaaattt ttagcatttt cttttaagtc tccttgtcta
     3181 aataaagttt taaaagctct gctaagtcta tctacttcat ctttatcaaa acgacgacga
     3241 atacctacta aatttaaact tctaatactt gcacgatttc cttctgctaa acaaaacggt
     3301 actatatcct gagaaagtgc acttgctcct gctatcatac aaccctcacc tactttgaca
     3361 aattgatgaa taggtgtaag cccgcctaca actgtaaaat ctccaagctc tacatgtcct
     3421 gctaaagttg cattattagc taaaataata ttattaccta aaagacaatc atgagcaata
     3481 tgacaataag ccataataaa agcattatcg cctatacgag taaaaccatc tcctttagct
     3541 gtacctgaat ttatcgttgc aaattctcta atagttgcat tttttcctat aacaacaccg
     3601 cttttttgct cttctttata agatatgtcc tgaggaatat cgcctactat agcataagaa
     3661 aatacacgag aatgatcacc tatagttgta tctgaaagaa ttcgagcacc ttgtttgatg
     3721 acaacattat tacctatttt agcatctttg cttacatagg cataagcttc tattacaaca
     3781 tcgtcaccaa gttgtgcacc ctcttcaatc accgcacttg gatgaatttt tttcattatt
     3841 tatccactat catagcttta agctcggcct ctgcaactaa atttccatct acaaaagctt
     3901 gccctttaaa aatccacata ttaccacgat ttttaaccac gctcatttca taatcaagcc
     3961 tatctccagg acgcacagga tttctaaatt ttgctccatc tatgcctgtg aaataaacta
     4021 ctttactttt tggatccact ttatcttcca tactttcaaa agctaaaact ccacctgttt
     4081 gagccatacc ttctaaaatc aaaactccag gataaatagg atgccctgga aaatgtccca
     4141 taaaaacatg gtcacttata ctgatgtttt tatatcctag caccacttct ttaactttta
     4201 attctgtaat tttatctact agtaaaaaag gataacggtg tggtaagatt tcttgaattt
     4261 gcattacatc tatcattatt aaatt
//
LOCUS       DAPIWQ010000127         4255 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.129, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000127 DAPIWQ010000000
VERSION     DAPIWQ010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4255)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4255)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4255
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.129"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            65..760
                     /locus_tag="RJ267_001503"
     CDS             65..760
                     /locus_tag="RJ267_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HDV7389342.1"
                     /translation="MTQEELDALMNGDVDLDSETEAEVKTEESNTEEDALMLEDVKIA
                     DYKPNPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSESLLK
                     EINKAIEKNIDIFSKLNEKFPNVESFSEVLELNNQAKKSSKEIVGNLQSGQDEVMMAM
                     DAMQYQDIHRQKIERVINVMRALSRYMSSLFEGKIDDKKRVSSAVHIEGDSTADVVSN
                     DDIEALIASLGQK"
     gene            757..2010
                     /locus_tag="RJ267_001504"
     CDS             757..2010
                     /locus_tag="RJ267_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HDV7389343.1"
                     /translation="MIIPEIVAPAGNFTKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIKYTHERGKKIYVTLNGFHLSSQIEGLKRHILKLREMKPDAFIVASVGAM
                     RLVKELAPEISLHVSTQANILNYLDAQVYKDMGAKRVVIARELGLKDAKALKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGTLFRLEE
                     DENGTHIFNSKDLNLCSYIEKIMQENCISAFKIEGRTKSEYYVALTTRTYKMAIQDAL
                     EGKFESSKYEKEIATLKNRGFTDGYLVSRPLEKTDTQNHNTSIEEGSHQVHAISEDGR
                     FFKCKGKIVLNTPYEILTPLGDVIQTCDNELGKIYQKEGKYFIEFKKLIAKNNKEFSE
                     IHSGNEHEIQLPNKISALSFLRKEI"
     gene            2011..2505
                     /gene="purE"
                     /locus_tag="RJ267_001505"
     CDS             2011..2505
                     /gene="purE"
                     /locus_tag="RJ267_001505"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HDV7389344.1"
                     /translation="MNFVSILMGSKSDYETMKEAAKTLESFGVKYELIISSAHRSPKR
                     TKEYIANAEEKGVKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMSGSNLASMDSLFSTV
                     QMPSGIPVGTLAIGKAGAINAAYLAMQILAIYDVDLAQKLKEDRLEKEKKLVSDSKEV
                     EVLL"
     gene            2515..3051
                     /locus_tag="RJ267_001506"
     CDS             2515..3051
                     /locus_tag="RJ267_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HDV7389345.1"
                     /translation="MQTYLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAH
                     QGTFSVVPSSAKSQTAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNNELKHAREEIEFLKRKYKLMWSKTAEIFGAKTE
                     PDLEMNKNLEKPIENMEQ"
     gene            3063..3926
                     /gene="glyQ"
                     /locus_tag="RJ267_001507"
     CDS             3063..3926
                     /gene="glyQ"
                     /locus_tag="RJ267_001507"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HDV7389346.1"
                     /translation="MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFD
                     LKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFE
                     NSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCA
                     EIYKKNLNEAE"
     gene            3913..>4255
                     /locus_tag="RJ267_001508"
     CDS             3913..>4255
                     /locus_tag="RJ267_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HDV7389347.1"
                     /translation="MKLSEIYNFLDQLSPFNIQESWDNSGILLGDRDSEISTVYLSLD
                     IDENIIKEASENSLIITHHPLIFKGLKDLYDKTYPRAFIKEMIYKNISLISMHTNYDL
                     SHLNTYFTEEIL"
BASE COUNT         1563 a          507 c          833 g         1352 t
ORIGIN      
        1 ttagataaaa ttgattataa ttttgagcaa ttattgaaaa tctagattta aaaaagggaa
       61 aaaaatgact caagaagagc ttgatgcttt gatgaatggt gatgttgatc ttgattcaga
      121 gacagaagca gaggtaaaaa ccgaagaatc gaataccgaa gaagatgctt tgatgttaga
      181 agatgtcaaa atagctgatt acaaacctaa tcctagtgta gtatggccac cacccccacc
      241 aaatcaggag cataaagttg tacatcagtt agatgatgtt acaaaagata gcgagcttaa
      301 agcaacggaa atgatggata agcttgaaag tattaataat ttttttgcgg attctgaaag
      361 tttactcaaa gaaataaata aagcaataga aaaaaatatt gatatttttt ctaaacttaa
      421 tgaaaaattt cctaatgtgg aaagtttcag tgaagtttta gaattaaaca atcaagctaa
      481 aaaaagttct aaggagattg tcggaaatct tcaaagcgga caagatgaag tgatgatggc
      541 aatggatgca atgcagtatc aagatataca tcgtcaaaaa atcgaacgtg ttattaatgt
      601 aatgcgtgct ttaagccgtt atatgagttc cttatttgaa ggtaaaattg atgataaaaa
      661 acgtgtaagt tctgcagtgc atattgaagg tgatagtact gctgatgttg taagtaatga
      721 tgatatagaa gctttaattg caagtttagg gcaaaaatga tcattcctga aatagtagct
      781 cctgcaggaa atttcacaaa attaaaaatt gctttagctt atggcgcaga tgcggtttat
      841 gcgggtgtga ataatttttc tttaagatca cgcactgcaa gagaatttaa ttatgaaagt
      901 tttgaagaag ctatcaaata tactcatgag cgtggtaaga aaatttatgt tactttaaat
      961 ggttttcatt tgagttctca aattgaaggt ttaaaaagac atattttaaa attgcgtgag
     1021 atgaaacctg atgcttttat tgtagcttct gttggagcta tgcgtcttgt taaagaactt
     1081 gcacctgaaa tttctttaca tgtttctact caggcaaata ttttaaatta tttagatgct
     1141 caagtttata aggatatggg tgctaaaagg gttgtaattg ccagagaatt agggcttaaa
     1201 gacgctaaag ctttaaagga aaattgcgat attgaacttg aagcttttgt gcatggttct
     1261 atgtgttttg cttattcagg gcgttgttta ataagctctg tgcaaagtgg aagaatgagc
     1321 aatcgtggat cttgtgcaaa tgattgtaga tttaattatg agctttatgc taaaaatcca
     1381 gaaaatggca ctttatttcg cttagaagaa gatgaaaatg gtactcatat ttttaattct
     1441 aaagatttaa atctttgttc ttatatagaa aaaatcatgc aagaaaattg tatcagtgct
     1501 tttaaaatag aagggcgtac taaaagcgaa tattatgttg cgcttacaac aaggacttat
     1561 aaaatggcca tacaagatgc tttagagggt aaatttgagt caagtaagta tgaaaaagag
     1621 attgctacac ttaaaaatcg tggttttaca gatggctatc ttgtttcgcg tcctttagaa
     1681 aaaaccgaca cacaaaatca taatacaagc atagaagaag gttctcatca agtgcatgct
     1741 ataagcgaag atggaagatt ttttaaatgt aaagggaaaa tcgttttaaa cacgccttat
     1801 gaaattttaa cccctttagg cgatgtgatt caaacttgcg ataatgaact aggtaaaatt
     1861 tatcaaaaag agggtaaata ttttatagag tttaaaaaac ttattgctaa aaacaataaa
     1921 gaatttagcg aaattcatag cggtaatgaa catgaaatcc aattaccaaa taaaatcagt
     1981 gcattaagtt ttttaagaaa ggaaatatag atgaattttg tttctatttt aatgggaagc
     2041 aagagtgatt atgagactat gaaagaggct gctaaaactt tagaaagttt tggtgtaaag
     2101 tatgaactta tcatctcatc agctcatcgt agtccaaaaa gaacaaaaga gtatattgca
     2161 aatgctgaag aaaaaggtgt gaaggttttt atagcagcag ctggaatggc agcgcattta
     2221 gctggagctg ttgcagctta tacaacaaaa cctgttttag gagtgcctat gtcaggaagc
     2281 aatcttgcaa gtatggattc tttgttttct acggtgcaaa tgcctagtgg aattcctgta
     2341 ggaactttag ctattggtaa ggctggagca atcaatgctg cttatttggc tatgcaaatt
     2401 ttagctattt atgatgttga tttagcacaa aagcttaaag aagatcgtct tgaaaaagaa
     2461 aaaaaacttg tatctgattc aaaagaagta gaagttttat tataagggat aaaaatgcaa
     2521 acctatcttg aacttgaaga attttgtaaa cttgtgcatt taaatgaaga tgtggttaag
     2581 ggtatgatgg ccaatggggc tttaaatttt aaagaagaag agggtaaaat ttacatcgaa
     2641 gcccatcaag gtacttttag tgtagtgcct agttctgcaa aatctcaaac tgcaatggta
     2701 aattcaatga ctttagcagg agaaagtttt gttgaaaaaa caataggaac tattttaaat
     2761 ttacatgaaa aagttttaga tgctaaagat gaaacacttg aagcattaaa aaatgaaaat
     2821 aaatttttaa aagatgccct ttattctatg caagagcttt atgatgaaga tagaaaaact
     2881 atagaaacct taaacaatga gttaaaacat gcgcgtgaag agatagaatt tctcaagcgt
     2941 aaatataaat taatgtggag taaaactgca gaaatttttg gagctaagac agagcctgat
     3001 ttggaaatga ataaaaattt agaaaaacct attgaaaata tggaacaata aagagagata
     3061 caatgacttt ttcacaaatg atacttaatt tacaaaatta ttggcaagag caaggttgtg
     3121 cgattatgca accttatgat atgccagcag gtgcaggaac ctttcatcca gcaacttttt
     3181 taagaagttt aggaaaaaaa ccttgggcag ctgcttatgt ggctccaagt agaaggccta
     3241 ctgatggacg ttatggtgaa aatcctaatc gcttaggtgc ttattatcaa tttcaagttt
     3301 taattaaacc tagtcctgat aatattcaag aattatatct taaaagtctt gaaaatttgg
     3361 gttttgattt aaaaagtcat gatattcgtt ttgttgaaga taattgggag agtccaagtt
     3421 tgggtgcttg gggtttaggc tgggaagtat ggcttgatgg tatggaagtt actcaattta
     3481 cttattttca gcaagttggc ggtatagcag tagatttagt aagtgctgaa attacctatg
     3541 gtcttgaaag aatagccatg tatcttcaaa atgttgataa tgtttatgat atagtttgga
     3601 gtgaatttaa tggagaaaaa attaaatacg cagatgtgca taagcaaagt gaatatgaat
     3661 ttagtaaata caattttgaa gtaagtgatg ttaaaatctt aaatgagcag tttgaaaatt
     3721 cttacaaaga atgtaaaaat attttagaac aaggactagc tttacctgct tatgattatt
     3781 gtatgcttgc tgcacatact tttaatcttt tagatgcaag aggagcaatt tctgtagcac
     3841 aaagacaaga ttatatgtta aaaattcgtg aactttcaaa aaattgtgct gaaatttata
     3901 agaaaaattt aaatgaagct gagtgaaatt tataattttt tagatcaatt aagtcccttt
     3961 aatatccaag aatcatggga taatagtgga attttgcttg gagataggga tagtgaaatt
     4021 tcaactgttt atttaagctt agatattgat gaaaatatca ttaaagaagc gagtgaaaat
     4081 tctttaatta tcacacacca tcctttgata tttaaaggtt taaaagattt atatgacaag
     4141 acttatccta gggcttttat caaagaaatg atttataaaa atatttcttt aatcagtatg
     4201 catacaaatt acgatttaag tcatttaaat acttatttta cggaagaaat tttag
//
LOCUS       DAPIWQ010000128         4236 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.130, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000128 DAPIWQ010000000
VERSION     DAPIWQ010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4236)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4236)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4236
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.130"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            60..836
                     /gene="surE"
                     /locus_tag="RJ267_001509"
     CDS             60..836
                     /gene="surE"
                     /locus_tag="RJ267_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HDV7389348.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYERMKKVKKWLKANDE"
     gene            826..1485
                     /locus_tag="RJ267_001510"
     CDS             826..1485
                     /locus_tag="RJ267_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HDV7389349.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFKNLTLIDADKFEITNQNRQIHSENIGEEKAKVFERIYKVKGIVSKIDENFLKNFD
                     LSEFDLIIDAIDDIPAKVALAHLIDFKKQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAKK
                     S"
     gene            1469..1927
                     /locus_tag="RJ267_001511"
     CDS             1469..1927
                     /locus_tag="RJ267_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7389350.1"
                     /translation="MLRKADIKDLNACLSLFEQSVKTLCAKDYTKDQICAWIKIDRQQ
                     WEEKFKYDEIFVYEKRGKIASFISVKQEQKLLDLLFTHPDFVRQGLAQNLLDFILKTY
                     LHNEIYTFASLSAKDFFLKNGFELIRENKVIKEGQNLKKILMKKDVIYKN"
     gene            complement(2037..2417)
                     /locus_tag="RJ267_001512"
     CDS             complement(2037..2417)
                     /locus_tag="RJ267_001512"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HDV7389351.1"
                     /translation="MNITLLKSKIHRASVTEARLDYIGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTATKITNYEKHGAIF"
     gene            complement(2414..3262)
                     /locus_tag="RJ267_001513"
     CDS             complement(2414..3262)
                     /locus_tag="RJ267_001513"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HDV7389352.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNTITDKLCGAKRPGHFRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVREGEKN
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIENITDNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            complement(3273..4097)
                     /gene="panB"
                     /locus_tag="RJ267_001514"
     CDS             complement(3273..4097)
                     /gene="panB"
                     /locus_tag="RJ267_001514"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HDV7389353.1"
                     /translation="MRKSILSFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSQEHSFDYLDDELLDKLY"
BASE COUNT         1451 a          677 c          671 g         1437 t
ORIGIN      
        1 ctatgaagct ttaaaaaaat atgttaaaat ccagattttt atcttttgca aggaagacaa
       61 tgaaagaaat tcttatcact aatgacgatg gttatgaaag cgaaggactt aaaaaactca
      121 ttaagatgtt aacaaaagaa tttaaagcca agatcaccat agtagctcct gctagtgaaa
      181 aatcagcttg ttcgcactct ataaccctaa ccaaaccttt gcgttttgtt aaagtgggaa
      241 aaagatttta caaacttgat gatggcactc cagcagattg tgtttatctt gctttgcatg
      301 ctttatacaa aaagcgtttg cctgatcttg taataagtgg gattaataaa ggtgctaatg
      361 taggcgagga tattacctac tcaggaactt gcgcaggagc tatggaggcg gttttacaag
      421 gaattcctgc tatcgctctt tctcaatttt ataaaaaaag cgaaaaagaa ctagactata
      481 aaaatgcttt acaaattacc aaaaaaatca ttcaaaatat ttttgataaa ggttttcctt
      541 tggaaaaaaa agaattttta aatatcaatt ttcctgcaaa atcaaaaatc aaaggcatta
      601 aaatttgtaa agcaggcaaa agggtttata attttgaagc ccattcaaat gtcaatccga
      661 gaggagtaga gtactattgg cttgcagcgg cgaatttaga ctttgaagat gagaaaaata
      721 gcgatattgc cttacttaaa aaaggctacg ctacaataac acctataatg ctggatctta
      781 cagcttatga aagaatgaaa aaagttaaaa aatggttaaa ggcaaatgat gaatgataga
      841 tttacacgta taaaatggct agttggagaa gaaaaatttc aaaaaatttc acaaacaaaa
      901 gttttggttt gcggacttgg tggagtgggt ggaatttgcg ttgatgcgct ttatcgtagt
      961 ggttttaaaa accttacttt aatcgatgcg gataaatttg aaatcactaa tcaaaatcgc
     1021 caaattcata gcgaaaatat aggcgaagaa aaggctaaag tatttgaaag aatttataag
     1081 gttaaaggta tagtcagtaa aatcgatgaa aattttttaa aaaattttga tttaagcgag
     1141 tttgatctta tcatagatgc cattgatgat attcctgcaa aagtagcttt ggctcatctt
     1201 atagatttta aaaaacaaat ttttatctcc tcaacaggtg gagctagaaa gcttgatcca
     1261 acacgcatta aaactacaag tatttttaaa actcacggcg atgctttagc gaaaaaattt
     1321 cgttatgagc ttagaaaatc aggctttaag ggaaattttg atgtggtatt ttcagatgag
     1381 gaagcgcatt gtaaagatct tggatctttt atgggtgtga ctgcatcttt tggtttagcc
     1441 ctagccagct tggcattaag aaaagttctt gctaagaaaa gctgatatta aagatttaaa
     1501 tgcttgtttg tcgctttttg agcaaagcgt aaaaacactt tgtgctaagg attatacaaa
     1561 agatcaaatt tgtgcttgga ttaaaattga tagacaacaa tgggaagaaa aatttaaata
     1621 tgatgagatc tttgtctatg aaaaaagagg aaaaatcgca agttttataa gtgttaaaca
     1681 agagcagaaa ttgcttgatt tgctttttac tcatcctgat tttgttagac aaggtttagc
     1741 acaaaattta cttgatttta ttttaaaaac ttatttgcat aatgaaattt acactttcgc
     1801 atccttaagt gctaaagatt ttttcttaaa aaatggtttt gaacttataa gggaaaacaa
     1861 ggttatcaaa gagggacaaa atttaaaaaa aattttaatg aaaaaagatg tgatttataa
     1921 aaactagaag ttaagataag caaaaataat ggattaaaag atataaaaat catttttttc
     1981 tatcttagat aaatgaattt atctaagata gaaaaaatta caaaaatagc tagatgttag
     2041 aaaatagctc cgtgtttttc ataatttgtt atttttgtag cagtgttatt ttcatccaca
     2101 aaaacaactt ttggtttaaa tgtttttgct tcttcttcat taaaatcagc ataagacatg
     2161 atgatcacct tatctcccac ttctgcaaga cgagccgcag caccatttaa gcatacaact
     2221 ccttcttctt gcgtggctat ggtataggtt tcaaatctag cgccattatt gacattgact
     2281 acttggactt tttcgtattc taaaattcca ctcgcttgca ataatttttc atctatactt
     2341 atacttccta tataatcaag cctagcttct gttacgcttg cgcgatgtat ttttgatttg
     2401 agtaaagtga tattcatttt aatccttgta ctaaaaaatt atcaatgagt cttgtttttc
     2461 caacaaaagc agccaccgct cctaaaacat tatcagtgat attttcgata ttttccatgg
     2521 tgttaaaatc gactaattct atataatcga ttttgattag tttttctttt tctaaaatat
     2581 ctttcatagc ttggatgatc ttagaagtat ttttttctcc ctctcggact aatttttcag
     2641 ccaaaaaaat gctttgagat atagctagtg acgcttttct ttcttctttg ctaagatata
     2701 catttctaga gcttttagct aagccatctt cttctctaat gataggacaa atttgaattt
     2761 ttaaatcaaa atttaaatca tcaaccatat gcctaacgac tacgcattgc tgcgcgtctt
     2821 tttgccccat atagactata tcagggttta ggatattaaa aaatttagtt aaaaccgtgc
     2881 aaacgcctct aaaatgcccc ggtcttttag ccccgcaaag tttatcagtg atcgtattca
     2941 tatctacata ggtgctaaaa ttcttaagat acatttgagt tgcatcgggg ataaaaacca
     3001 tatcaacgcc attatcttga cacattttaa tgtcgcgttc taaatctctt ggataactag
     3061 aaaaatcttc attaggccca aattgcatag gatttacaaa gatacttact ataaccttat
     3121 cttgtgtttt ggcatgtttg actaaactta aatgtccatc gtgtaaaaaa cccatggttg
     3181 gaacatagcc tatactaagt tgatgtgatt tccaatcttt tacaatttgt tttgcttctt
     3241 tgacagaagt aatgacttgc atatttgtat ccttagtata atttatctaa taattcatca
     3301 tctaaataat caaagctgtg ctcttgggaa ggaaaaatac cgcttttaac ttcatctcta
     3361 tatttttcaa ctcctacttg aggatcaatt ttatcaaaat gctttacaaa ttttgcttta
     3421 aaatctttat ttaaacccaa aagatcgtga taaactaaaa cttgtccatc gcagtatttg
     3481 cctgaaccta tgccgattgt tggaatttct aaaatagagc ttattttttg tgctagtttt
     3541 acaggcacac attctaaaac caacatacaa gcacccgcat cttgcacagc ttttgcatca
     3601 tctataattt tttgggccga ttgtaaatct ttaccttgaa ccctatagcc acctagcata
     3661 tttacagctt gtggggttag tcctaggtga gcaacgacgg gtattcctga ttgggaaatc
     3721 aatttaatct tacttgcgat ttctataccc ccttccactt ttaccccatt tgcgtggctt
     3781 tctttgataa atcttgaggc atttaagata gcgtcacgat ctgaactttg ataagacata
     3841 aaaggcatat cagcaagtac gaaagacttt ttagctccgc gagaaacagc tttggtaaaa
     3901 atcaacattt catccatagt aacacttaaa gtatcttgca tgccaagcac tgtcatagct
     3961 aatgaatctc caaccaatat aatatctata tcgctattgt ctaaaattct tgcactatga
     4021 taatcatacg cacttaccat ggttattttt tcatttttgg cctttttttc caaaaaacta
     4081 agaatacttt ttctcattta aaatacctcg tttagctata aaatagtaag caaaaaacta
     4141 gcatataaat tttcataaat agtaaataaa cgataaaaca aaatatattt aattaatgga
     4201 ttgttttaat ggttacaatt ttagaaaatt tcagtt
//
LOCUS       DAPIWQ010000129         4226 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.131, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000129 DAPIWQ010000000
VERSION     DAPIWQ010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4226
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.131"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..2528)
                     /locus_tag="RJ267_001515"
     CDS             complement(<1..2528)
                     /locus_tag="RJ267_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HDV7389354.1"
                     /translation="MSQFEPFLALEASAGSGKTFALSVRFVALILKGARINEILALTF
                     TKKAANEMQKRIIETFLNLEKENKTSECNELCKLLGKDKEELISLRDAKKEEFLRTEL
                     KISTFDAFFGKILRVFALNLGLSSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLV
                     DEKENFFNELEKFYENAYFQNRPKILNPTKAYINKAYSELRSYCLGLTHVKNYKNLCD
                     NFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAKRMELINALNTYAIELENY
                     KIANLMNLLNHYSEAKNIFHKDKNTLNFQDVSKKVYELITSEFKDMIYFRLDGFISHL
                     LIDEFQDTSVIQYQILRPLIAELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDL
                     LKQEFSQIKSDNLNTNYRSKELLVDFVNETFKEKIKDYKEQFALESKKGGFVRIVESK
                     EQKVKNQAQEIKEKTLETLFEQINFLRSKNISYDDICILCWKNSDADMVLDFLREQNI
                     PAFTQSNVLLENKASVRLVLEYAKYCIFGDEFYLVFLKELLGFEPRKITLDFSKNAME
                     NVLFLIKELKLDLNDIALIQFIEYAKTKENFLKLLFEPCALKIVSEQNMGISIMSVHK
                     SKGLEFDHVILLDSLSKNNSNNEDIMLEYDINQGWQLHIKDKIRELTKEPIYTLFKEN
                     ITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQERGFLE
                     SKEQILSVKKESIQTLQKFEKITLQEIQSEERLDSKELYFGNAFHFFMQNLKLPKGEN
                     FQILTQRCKSKFRHFLDESDFEKLFKRIEILLKNIQFQNLIGDG"
     gene            complement(2525..>4226)
                     /locus_tag="RJ267_001516"
     CDS             complement(2525..>4226)
                     /locus_tag="RJ267_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HDV7389355.1"
                     /translation="ILKEEIFKTKNSKMKLKSFELRALQCAFVMDEISHFVRKGLKPE
                     NIAVITPDESFCEFLRLFDKDNMLNFASGISIKESLFYQKFQALYESASSASFIYKNQ
                     EDYFEDTQMIFDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFEKLLALFLENEKQELIY
                     LIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSLSDVGGGKVTVMGLLESRGLCFD
                     GVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNALEVSI
                     CFVENEEKSKSRFLDELDFDFFYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHN
                     PFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHKMLEIYYKN
                     YANNNFDIKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEHFSKGFYVAHTEL
                     ELNNILKLGTDSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSYQLAFYQALYDENAS
                     VGFYDLNSMQILHQKAKSLDELRERLKDLVLMSKEEIEFENEQDEYCPYKLIYKKELK
                     "
BASE COUNT         1480 a          706 c          422 g         1618 t
ORIGIN      
        1 tttccatcac caatcaaatt ttgaaattga atatttttaa gtaaaatttc aattctttta
       61 aaaagctttt caaaatcact ctcatctaaa aaatgtctaa atttactctt gcatctttga
      121 gtaagtattt gaaaattttc acccttagga agttttaaat tttgcataaa aaagtgaaaa
      181 gcatttccaa aatatagttc tttactatca agcctttctt cactttgaat ttcttgcaag
      241 gtaatttttt caaatttttg caaagtttga atgctttctt ttttaacgct taaaatttgt
      301 tctttgcttt ctaaaaaacc tctctcttga gaatgtatat ttaaaaatcc ccccttaaaa
      361 taacttggat aatttccatt tacactttct tcatttcttt ttatgatgat caaactttcc
      421 ttagctcttg taaaagccac ataaagttta ttaatatcat cttcataatt tgctcttgta
      481 atattttctt taaaaagagt ataaataggc tctttagtaa gctctcgaat tttatcttta
      541 atatggagtt gccaaccttg attgatatca tattcaagca tgatatcttc attgtttgaa
      601 ttgtttttag ataaactatc aagtaaaatc acatgatcaa attccaaacc cttagattta
      661 tgcacactca taatactaat tcccatattt tgttcgctta ctattttcaa agcacaaggc
      721 tcaaataaaa gctttaaaaa attctcctta gttttagcat attcgataaa ttgtattaaa
      781 gcgatatcat ttaaatcaag ttttaattct tttattaaaa aaagtacatt ttccatagca
      841 ttttttgaaa aatcaagggt aatttttctc ggctcaaaac ctaaaagttc ctttaaaaat
      901 accaagtaaa actcatcacc aaaaatacaa tatttagcat attctaaaac aagtcttaca
      961 cttgctttat tttcaagtaa aacattgctt tgagtaaatg caggaatatt ttgctctctt
     1021 aaaaaatcca aaaccatatc tgcatcacta tttttccaac acaaaataca aatatcatca
     1081 taagaaatat ttttagatct taaaaaatta atttgctcaa ataaagtttc taaagtcttt
     1141 tccttaattt cttgggcttg gtttttaacc ttttgttcct tagactccac aatacgcaca
     1201 aaaccgcctt ttttactttc taaggcaaat tgttctttat aatctttgat tttttcttta
     1261 aaagtttcat taacaaaatc aaccaaaagc tctttagaac gataattagt atttaaatta
     1321 tcacttttaa tttgactaaa ttcttgtttt aacaaatcaa ataattcttt ttttccttta
     1381 cgaaagcgat aaatactttg ttttttatct cctacataaa aaaaagtgcg atttttctta
     1441 accccttctc ctgaaacaag ctcagcgatc aaagggcgta aaatttgata ttggatcacg
     1501 cttgtatctt gaaattcatc aataagcaaa tgcgaaataa aaccatctaa acgaaaataa
     1561 atcatatcct taaattcact ggttattaac tcataaactt ttttactcac atcttggaaa
     1621 tttaaggtat ttttatcttt atgaaatata tttttagctt cactataatg atttaaaaga
     1681 ttcattaaat tagcaatttt ataattttca agctctatgg cataggtatt taaagcattt
     1741 ataagctcca ttctttttgc actaaaatgc aggttagtac tttctaaatc ttgtaaatat
     1801 tttgtacttt caaattttgt cataaaactt gattgcataa acacggataa atctaaaact
     1861 tcacttttga aattgtcaca caaattttta taatttttta catgagtaag acccaaacaa
     1921 taacttctta actcactata agctttattg atataagctt tagttggatt tagaatttta
     1981 ggacgatttt gaaaataagc attctcataa aatttttcaa gctcgttaaa aaaattttct
     2041 ttctcatcaa ctaaattaat ataataagcc aaatctttta attcatcttt tttaagaagt
     2101 tttaaaaaaa tctctcttac atcaagcctc tcttcactca ttgtaaaatc actacttaag
     2161 cccaaattta aagcaaaaac acgcaaaatt tttccgaaaa aagcatcaaa agtactgatt
     2221 tttaactctg ttcttaaaaa ttcttctttt ttagcatctc ttaaagaaat aagctcttct
     2281 ttatctttac ctaaaagctt gcaaagttca ttgcattcac tggttttatt ttctttttct
     2341 aagtttaaaa aagtctcaat aattcttttt tgcatttcat tagcagcttt tttggtaaaa
     2401 gtcaaagcta aaatttcatt aatcctagct ccttttaaaa taagtgctac aaaacgcaca
     2461 ctcagggcaa aggtttttcc gcttcctgca ctcgcttcta atgctaaaaa aggctcaaat
     2521 tgactcattt taattccttt ttataaatga gtttataagg acaatactca tcttgttcat
     2581 tttcaaactc tatttcttcc ttactcataa gaactaaatc tttaagtctt tctcttagct
     2641 catctaaact tttggctttt tgatgcaata tttgcatact atttaaatca taaaaaccca
     2701 cgcttgcatt ttcatcatat aaagcttggt aaaaagcaag ttgataagaa ttacttggca
     2761 cttttccact tttataatca ataatcaaat taccttcttt tgaactatcg atacgatcta
     2821 tagtaccctt aagttttata ctatctgttc cgagctttaa aatattgttt aactcaagct
     2881 ctgtatgtgc gacataaaag ccttttgaaa aatgctcttt ttcattttta gcaaattgta
     2941 taaattttaa tttaaatact tcaagatcaa gttcactgat attgtatttt tgatattctt
     3001 tatccaataa atttgcaaaa acttttatat caaaattatt atttgcataa tttttataat
     3061 aaatttcaag cattttatgg ataaaatttc cttgattttt cgctttgctt tcctcgctta
     3121 aaaccctagg ttctgctaaa tttaaaatat aacgataata ataagttctt ttttgatttt
     3181 ccaataaatt aaaacgacta aaagaaagcg gaaactcgaa aggattatgc tttaaaatag
     3241 gagcttttat aggagttaga ttaggtttta tgccttcata gtctaatttt aaagcattaa
     3301 gataagcttt ttggtggata tgagtttcat aaaaaaagtc aaaatcaagt tcatctaaaa
     3361 aacgtgattt gcttttttct tcattttcca caaagcaaat acttacttct aaagcattct
     3421 tcatcaagct ttcataataa aatctttgta aattttctct tctatcatag ctaatcaatc
     3481 ctgctttttt acgcacttca ttgtttaaaa aaagctcatt aacacttctt ttaggaataa
     3541 attcttcatt aaaatcaacc aaaatcactc catcaaaaca aagcccacga ctttctaaaa
     3601 gtcccattac cgtaacctta cctccaccta catcactaag ggaaagttgt gaaatttgca
     3661 tgaaaaaaag atggatcaac tctttaagag ttaaagactg atttttcaat aaatctttaa
     3721 taaaataaag ttcttttcgt atcaaataaa taagctcttg cttttcattt tctaaaaaca
     3781 aagcaagtaa tttttcaaaa tattcaaaat cacatttctc atcaaaatac tttttaaact
     3841 ctataaaatc aagttttaaa gaatgtaaaa gcgtattgtg ataatcaaaa atcatctgcg
     3901 tgtcttcaaa ataatcctct tgatttttat aaataaaaga agcactacta gcactttcat
     3961 aaagtgcttg aaatttttga taaaacaaac tctctttaat actaattcca cttgcaaagt
     4021 taagcatatt gtctttatca aaaagtctta aaaactcaca aaaactttca tctggagtta
     4081 taactgcaat attttcaggc tttaaacctt tgcgtacaaa atgtgaaatt tcatccataa
     4141 caaaagcaca ttgcaaagcc cttaattcaa aagatttgag tttcattttt gaattttttg
     4201 ttttaaaaat ttcttctttt aagatc
//
LOCUS       DAPIWQ010000130         4211 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.132, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000130 DAPIWQ010000000
VERSION     DAPIWQ010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4211)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4211)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4211
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.132"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            158..760
                     /locus_tag="RJ267_001517"
     CDS             158..760
                     /locus_tag="RJ267_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDV7389356.1"
                     /translation="MKRNEHNIVLIKNPNFNALIDTGFLDTIDTLKEKLHIHKTDFKD
                     ITHIILTHAHPDHIGALMSEENLFPKAQILIDKKEYDFWIKSDRQEIKNTLLKLKNIE
                     FIDHSKDLIFQNSGIKAIPAYGHTPGQNAIIIDDKIVFWGDLLHLYDIQIPKPKIAIK
                     FDIDQNEAIQTREKLLKEFKERKLKVIGTHVPFIKPKFLD"
     gene            848..1066
                     /gene="infA"
                     /locus_tag="RJ267_001518"
     CDS             848..1066
                     /gene="infA"
                     /locus_tag="RJ267_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HDV7389357.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            1238..1351
                     /gene="rpmJ"
                     /locus_tag="RJ267_001519"
     CDS             1238..1351
                     /gene="rpmJ"
                     /locus_tag="RJ267_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HDV7389358.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            1354..1719
                     /gene="rpsM"
                     /locus_tag="RJ267_001520"
     CDS             1354..1719
                     /gene="rpsM"
                     /locus_tag="RJ267_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HDV7389359.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            1729..2121
                     /gene="rpsK"
                     /locus_tag="RJ267_001521"
     CDS             1729..2121
                     /gene="rpsK"
                     /locus_tag="RJ267_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HDV7389360.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            2149..2775
                     /gene="rpsD"
                     /locus_tag="RJ267_001522"
     CDS             2149..2775
                     /gene="rpsD"
                     /locus_tag="RJ267_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HDV7389361.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDN
                     IVYRMGFATTRRFARQLVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVVIPVEERFIVELYSK"
     gene            2788..3801
                     /locus_tag="RJ267_001523"
     CDS             2788..3801
                     /locus_tag="RJ267_001523"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HDV7389362.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGDSNKEIVE
                     FSFKGSKEIYGKDLNNDQVEVVNKDAYLATINEDAELKFTLIVEKGIGYVPSEEIKEL
                     INDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSVIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYI
                     GELALMSVSELAGLKNLGKKSLDEIKNIMESIGFPVGTSKLSDNKEILKNKIAELKAQ
                     NEG"
     gene            3805..4158
                     /gene="rplQ"
                     /locus_tag="RJ267_001524"
     CDS             3805..4158
                     /gene="rplQ"
                     /locus_tag="RJ267_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HDV7389363.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFASLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
BASE COUNT         1690 a          596 c          752 g         1173 t
ORIGIN      
        1 ttatttttta gaagaaaaaa ccacaagcaa aaattcaaat caaacccata taatctcact
       61 taaacagtct gatgatgaat ttttaaattt attattttct tttttagtgc cacaaagcga
      121 tgaagataag aattttatag aaaaaactcg cacaaaaatc aaaagaaatg agcataatat
      181 tgttctgata aaaaatccaa attttaatgc tttaatagac acagggtttt tagatactat
      241 tgacacatta aaagaaaaat tacatatcca taaaaccgat tttaaagata tcactcatat
      301 tatcttaaca cacgcacatc ctgatcatat aggtgcttta atgagcgaag aaaatctttt
      361 tccaaaagct caaattttaa ttgataaaaa agaatatgat ttttggatca aaagcgatag
      421 acaagaaatt aaaaacacct tgcttaaact taaaaatata gaatttatcg atcattccaa
      481 agatttgatc tttcaaaatt caggcattaa agccatacct gcttacgggc ataccccagg
      541 tcaaaatgct atcataattg atgataaaat agtcttttgg ggagatttac ttcatcttta
      601 tgatatacaa atcccaaaac ctaaaatcgc tataaaattt gatatagatc aaaatgaggc
      661 tatacaaaca agggaaaaac tacttaaaga atttaaagaa agaaaactca aagttatagg
      721 gactcatgtg ccttttatca aacctaaatt tttagattaa ttacttaaaa attactaaaa
      781 attaagtaaa aattttaata atttttgcta aaattatagc ctttttattt catgaaagga
      841 gaaaattttg gcaaaagatg atgtaattga aattgatggc accgtacttg aagcattgcc
      901 taatgcaaat ttcaaggttg aacttgacaa caaacatgta attttatgtc atattgcagg
      961 aaaaatgcgt atgcattata taagaataat gccaggtgat aaagtaaaag tagaacttac
     1021 accttatagt cttgataaag ggcgtataac ttttagatat aaataatcta agttatttaa
     1081 aagctaattt tagataaaat tagagttttt gcgacaaatt acatcgaact atatgaagaa
     1141 gtatttttaa aatccaccac ttattttgaa aatagttggt tattcataaa acctgatgta
     1201 gtcgtaaatc aagtggaatt cattcaagga gacgctcatg aaagtgagac catcggttaa
     1261 aaagatgtgc gacaaatgca aagtagttcg ccgtaaaggc gtggttcgca ttatttgcga
     1321 aaatccaaaa cataaacaaa gacaaggata aacatggctc gtattgcagg tgtggattta
     1381 ccaaagaaaa aaagaattga gtatggacta acctatattt atggtatagg acttttcact
     1441 tcaagaaaaa ttctagataa agtaggaatt tcttatgata aaagagttca tgagttaagt
     1501 gaagatgaag cagcagctat ccgtaaagaa attcaagaaa actatatggt tgaaggggat
     1561 ttgagaaaac aagttgctat ggatattaaa gcacttatgg atttaggaag ctttagaggt
     1621 ttaagacaca gaaaaggctt accagttcgc ggacaaaaaa caaaaacaaa cgcaagaact
     1681 agaaaaggta agagaaaaac tgttggtgca aaatcataag gataaatcat ggcaaaaaga
     1741 aaaatcgtaa agaaaaaagt agttaaaaaa aatatagcaa aaggtattgt ttatatcagt
     1801 gcgactttta acaatactat ggttacagta actgatgaaa tgggaaatgc tatcgcttgg
     1861 agtagtgcag gtggtttagg atttaaaggt tctaaaaaat caactcctta tgcagcacaa
     1921 caagcagtag aagacgcttt aaataaagca aaagaacacg gaattaaaga agtaggcatt
     1981 aaagtacaag gaccaggaag cggtagagaa actgctgtta agagtgtagg tgctatggaa
     2041 ggaatcaaag taactttctt aaaagatatc actccattag ctcacaatgg ttgcagaccg
     2101 cctaagcgtc gtcgtgtcta agatataaga aaaatttagg agaatattat ggcaagatat
     2161 agaggaccag tagaaaaatt agaaagacgc tttggtgtta gcttagcatt aaaaggagaa
     2221 agaagactag ctggcaaaag tgcactagat aaacgccctt atgcaccagg acaacacgga
     2281 gcaagaaaag gtaaaattag tgagtatgga cttcaattaa gagaaaaaca aaaagctaaa
     2341 tttatgtatg gagtaagcga aaagcaattc cgtcgtttat ttgctgaagc agcaagaaga
     2401 gaaggaaata caggggtatt acttatccaa cttttagaac aaagattaga caatatagta
     2461 tatagaatgg gttttgctac aacacgtcgt tttgcaagac aacttgtaac acatggacat
     2521 gttttagtaa atggtaaaag agtggatatt cctagcttta gagtagaagc aggtgctaaa
     2581 atcgaaatta tcgaaaaaag caaaaacaat cctcaaatta caagagctat cgaacttaca
     2641 gcacaaactg gaatcgttgc ttgggttgat gttgaaaaag ataagagatt tggaattttc
     2701 acaagaaaac ctgaaagaga agaagttgtc attccggttg aggaaagatt tatcgttgag
     2761 ctttactcta aataataggg gctaaatatg agaaatatta caacatctgc ttatacgcca
     2821 acagaattta caatagaaaa cattagtgat actgtggcta aaatcagtgc ttggcctttt
     2881 gagatcggct atggaatcac cctagcccat cctttacgcc gtttacttta cactagcacc
     2941 ataggatatg ctccaactgc gattcatatt gatggcgtag ctcatgaatt tgatagcatg
     3001 cgtggtatgc ttgaagatgt agcacttttt atcattaatc taaaaaaact acgctttaaa
     3061 attaaaggcg actcaaataa agaaatagta gaatttagct ttaaaggctc aaaagaaatt
     3121 tacggcaaag atctaaataa tgatcaagta gaagtagtaa ataaagacgc ctatctagca
     3181 acaatcaacg aagatgctga actcaaattc acattgatcg ttgaaaaagg tattggctat
     3241 gtaccaagcg aagaaattaa agagcttata aatgatccta aatttatagc tttagatgct
     3301 ttctttacac ctgtaagaga agcaacctat gatattgaaa aagttttatt tgaagataat
     3361 cctgattatg aaaaagtggt tttaaccgta acaactgatg gacaaatcac tccaaatgaa
     3421 gcttttcaaa atgctctaga agctatgtat aaacaattat cagtatttga taaaattacc
     3481 aatgttagaa gtgtaattaa aaatcaagca acaagcaatg aactagaaaa tactaaatta
     3541 ttgcaaaaca ttacagattt aaatttaagt gctagaagtt ataattgtct tgaaaaagca
     3601 ggagtggttt acataggcga gcttgctttg atgagtgtaa gtgaacttgc agggcttaaa
     3661 aatttaggta aaaaatctct tgatgaaatt aaaaacatca tggaaagcat aggttttcct
     3721 gtgggaactt ctaagcttag cgataataaa gaaatactta aaaataaaat cgcagaatta
     3781 aaagcacaaa acgaaggata aagaatgaga cataaacatg gatatagaaa acttggcaga
     3841 acttcatctc atcgtgctgc cttattaaaa aatttaacta tagctttagt aaatagcgga
     3901 aaaatcgaaa ccactctacc aaaagctaaa gaattaagag gttatgtaga aagattgatt
     3961 actagagcaa gacttggaga ttttaacgct catagagcag tttttgcttc attacaagat
     4021 aaaaacgcta ccaataaact agtaactgaa attgctccaa aattcaaaga tcgcaatggc
     4081 ggatatacaa gaatcatcaa aacaagaatt cgccgtggtg atgccgctga aatggctttc
     4141 atcgaatttg tagcttaatc aaatcctagc ttttgctagg attaatactt caattaaata
     4201 tcctaaaaat a
//
LOCUS       DAPIWQ010000131         4200 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.133, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000131 DAPIWQ010000000
VERSION     DAPIWQ010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4200)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4200)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4200
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.133"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            75..884
                     /locus_tag="RJ267_001525"
                     /pseudo
     CDS             75..884
                     /locus_tag="RJ267_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343599.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
     gene            877..2208
                     /locus_tag="RJ267_001526"
     CDS             877..2208
                     /locus_tag="RJ267_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="McrC family protein"
                     /protein_id="HDV7389364.1"
                     /translation="MNSIFSIIEYQAFSKEDLKEIFKEKAEGFYKELEDFAKNNENLL
                     GFKNKNSLKAKNYVGIIQTKSGVLEILPKCTNLDSYKKEDSSSNHDKEKLRRCYELDN
                     ISKNNDFYEKDFKFNPKNLLINMLKTLKNSPFKKSQISSLQSSKIPLFEVFITMFLDE
                     FDSVYKKGLMRSYLSCEENRAFLKGKLLFNEHIKRNLIHKERFFTSNDEFVLDIAPNR
                     LIKSTLNFLKSKTSLNKFRLIKSMQILDEVEFSKNYEKDFSYKISRHFDYYENLLLWC
                     KIFLKNESFMPYHGKNEAFALLFPMEKIFEDYVAYMLKKVNPAQDIKVQNNGKYLISK
                     NDENCFMLKPDLYIENKMILDTKWKIPNDSEDEKKQGIEQSDLYQMFAYACKFKIYDI
                     KLVYPLCEKTQDLQRKIAEKFFVFKASEHLYFKEQGQKDIKVQVCFAPLPF"
     gene            complement(2197..3000)
                     /locus_tag="RJ267_001527"
     CDS             complement(2197..3000)
                     /locus_tag="RJ267_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDV7389365.1"
                     /translation="MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGIT
                     HGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKRYEHRSDSIIAVIWAFGMAVG
                     IILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLIFLFYRQFEALSFDA
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKKLGFI
                     MVLASFLSMIFCVLGLILSYYLNLSSGACIIAVACFGFLMHLIGKFLKR"
     gene            complement(2993..3847)
                     /locus_tag="RJ267_001528"
     CDS             complement(2993..3847)
                     /locus_tag="RJ267_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HDV7389366.1"
                     /translation="MLFFEISNLNYAYDNEIILKNINLSYDNKDFLSIIGPNGAGKST
                     LVKLILGLLKSKNEIHFKALQRKEIGYVPQHTLANPNFCPRVLEIVLMGLVSKKIFGF
                     YGKKDKEKAMQALKSVGMEKFWNKTIDSLSGGQRQRVFIARALASECKMLILDEPTAS
                     VDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEK
                     SSFLKHLYENHSHFCDVEMSLNTCFCDEKNCDSKKLCEQEFTRRNLKKTEFKKENFCL
                     KFSKENNA"
     gene            complement(3860..>4200)
                     /locus_tag="RJ267_001529"
     CDS             complement(3860..>4200)
                     /locus_tag="RJ267_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HDV7389367.1"
                     /translation="LNLQIASKLEKLKNREFVVYHPSWTYFAKRYNLTQIPVEILGKE
                     PKSKDLQKLITLMKDKNLKVIFVQNGFPENAAKTLAKECDAKIYKIDHLSYDWENELL
                     KTADAFSHNL"
BASE COUNT         1626 a          554 c          627 g         1393 t
ORIGIN      
        1 aagctatctt aaactatttg aaatcacaag gtttaaaaga ttataaagaa aaagatgaaa
       61 aaataaattt accttatata atcattatag atgaaatcaa tcgtggtaat gtaagtaaga
      121 tttttggtga gcttataacc ttgatagagc ctagtaagag attaggaaat gaagaagcat
      181 tagaattaac tttgccttat agtggtgaaa aattcggagt gcctaaaaat gtttatatca
      241 taggcactat gaatacagcc gatagaagca taacttctct tgatacagct ttaagaagaa
      301 gatttgaatt tgttgagatg atgcctaatt ctgatttact taataatgtt tttatttgta
      361 aagatgtaga aaatccaaat gaagacgaag attatttagg agatgatgct aaaacagagg
      421 gttatgcaga gatacttcaa aatattttaa taagtataaa taaaagaatt gaatttttat
      481 tagatagaga aaaaactata gggcatgcat tttttatgag tgaagctgtt aaatttaata
      541 aaaataattg gattaagcca gatgaatatg aagaagattg gtatgtttta agtatctcaa
      601 agttaaaaaa agtttttcaa aacaaaatta tcccgctttt gcaagagtat ttttataatg
      661 attatgcttt gattaatgcg gttttaaatg ataatggtat gatttttgaa gataaaaaag
      721 acgataaata tcttcaaaaa ataaaaaatc tagatagtgt taatagcgag agaagtattt
      781 ataatattgc ttcatttgat gataaaattt gggataaaat agaaatatat caagcaattt
      841 ataatgatga aatagcaaat aaattaaaaa acgaaaatga atagtatttt ttccatcatc
      901 gaataccaag ctttttctaa agaagattta aaagaaattt tcaaagaaaa ggccgaaggg
      961 ttttataaag agctagaaga ctttgcaaaa aataatgaaa atcttctagg ctttaaaaac
     1021 aaaaattcct taaaagctaa aaattatgtc ggcattatac agactaaaag cggggttttg
     1081 gagattttgc caaaatgcac gaatttagat agttataaaa aagaagatag ttcttcaaat
     1141 catgacaaag aaaaactaag aagatgttat gaattagaca atatttctaa aaataatgat
     1201 ttttatgaaa aagattttaa atttaatcct aaaaatcttt tgataaatat gctaaaaacc
     1261 ttaaaaaact ccccctttaa aaaatcgcaa atttcatctt tgcaaagttc taaaattcct
     1321 ttatttgaag tgtttatcac tatgttttta gatgaatttg atagcgtata taaaaaaggc
     1381 ttgatgagat cttatctaag ttgcgaagaa aatagggctt ttttaaaggg aaaattacta
     1441 tttaacgagc atatcaagcg aaatttgata cacaaagaaa gattttttac aagcaatgat
     1501 gagtttgttt tagatatagc acccaatcgt ttgataaaat caacgctaaa ttttttaaaa
     1561 tcaaaaacaa gtttgaataa atttagactt ataaaatcta tgcaaattct cgatgaggta
     1621 gaattttcta aaaattatga aaaagatttt agttataaaa tttcaagaca ttttgattat
     1681 tatgaaaact tgcttttgtg gtgtaaaatt ttcttaaaaa atgaaagttt tatgccttat
     1741 catggtaaaa atgaagcttt tgctttgctt tttcctatgg agaaaatttt tgaagattat
     1801 gtagcttata tgctaaaaaa agtaaatcca gctcaagata ttaaagttca aaacaatgga
     1861 aagtatttaa tctcaaaaaa tgatgaaaat tgtttcatgt taaagcctga tttatatata
     1921 gaaaataaaa tgatcctaga taccaaatgg aaaattccaa atgatagtga agatgagaaa
     1981 aaacagggta tagaacaaag cgatttgtat caaatgtttg cttatgcttg caaatttaaa
     2041 atttatgata ttaaacttgt gtatccttta tgtgaaaaaa ctcaagattt acaaagaaaa
     2101 atcgcagaaa aattttttgt ttttaaggca agcgaacatt tgtattttaa agaacaaggg
     2161 caaaaagata taaaagtgca agtgtgtttt gcacctttac ctttttaaaa atttgcctat
     2221 caaatgcatt aaaaaaccaa aacaagctac agctatgata caagcaccgc ttgagaggtt
     2281 aagataatag ctaagtataa gtcctaaaac acaaaaaatc atacttaaaa aacttgctaa
     2341 aaccatgata aagccaagtt ttttggtgaa attttcagca ataaagcttg ggatgctaag
     2401 taaagccata accaaaataa gccctacaag gcgtatagaa ataactatac aaaaagccat
     2461 aagggcgatt aaaagataat gaaaaaaact tgtattgata ccacgaactt ttgcaaattc
     2521 cgcatcaaag cttaatgctt caaattgtct ataaaataaa aagatcaaaa gcaccaccac
     2581 gctatcaacc aaagccataa gccataaatc ttgcgtccct acagctaaaa tgctcccaaa
     2641 aagataagcc attaaatctg tgttataact agggcttaaa tcgattaaaa taatcccaac
     2701 agccattcca aaagcccaga ttacagcgat aatactatca cttctgtgtt catagcgttt
     2761 agctaaaaaa gctactaaaa aagccaaaaa taaagtaaat attcccgtgc ttaataaaat
     2821 aggcaaagag aaataaaaag ctatacctat accaccaaaa gccccatgtg ttatacctcc
     2881 agccatagaa aaaaggcgat ttatcatcac caaagtacct atgatcccac aagctatact
     2941 gactaaaatc gctcctagta aagcgttttg aaaaaaggtg aaatttaaaa tttcaagcat
     3001 tattttcctt tgaaaatttt aaacaaaaat tttctttttt aaattctgtt tttttcaaat
     3061 ttcttcttgt aaattcttgt tcgcatagtt ttttgctatc gcaatttttt tcatcgcaaa
     3121 aacaagtatt taaactcatt tctacatcac aaaaatgaga gtgattttcg tataaatgtt
     3181 ttaaaaatga acttttttct ttttctttag tgttagtatg caagaaaagt tctttgttta
     3241 aatgtgcaat tttatcgcta taagctaata caaggttgat atcgtgacaa atgagtaaaa
     3301 ttcccatgcc tttttggtgc aaagagctta gaagttcaaa aatttgtata gcagacttgt
     3361 tatcaacgct tgcggtaggt tcatctaaaa taagcatctt acattcacta gctaaggctc
     3421 ttgcgataaa aacacgttgt ctttgtcctc cgcttaaaga atcaatggtt ttgttccaaa
     3481 atttttccat tcctacactt tttaaagctt gcatagcttt ttctttatct tttttcccat
     3541 aaaaaccaaa aattttttta cttacaagtc ccataagaac gatttcaagt actcttgggc
     3601 aaaaattagg attggctaga gtgtgttgag gaacatagcc tatttctttt ctttgaagag
     3661 ctttgaaatg gatttcattt ttggatttta aaagtcctaa gataagtttt acgagtgttg
     3721 attttcctgc gccatttgga cctatgatag agagaaagtc tttattgtca tagctaagat
     3781 tgatgttttt taagatgatt tcattatcat aagcgtagtt tagattagaa atttcaaaaa
     3841 aaagcatcaa aaaacctgat tataaattat gagaaaaggc atcagcagtt tttaaaagct
     3901 cattttccca atcataagat aaatgatcta ttttgtaaat ttttgcatca cattctttag
     3961 caagtgtttt tgctgcattt tcagggaaac cattttgaac aaaaatgact tttaaatttt
     4021 tatctttcat tagagtgata agtttttgca aatctttgct ttttggttcc ttacctaaaa
     4081 tttctacagg aatttgcgta agattatagc gttttgcaaa atatgtccaa gaaggatgat
     4141 aaactacaaa ttctctattt tttaattttt ctaattttga ggcaatttgt aaatttaaac
//
LOCUS       DAPIWQ010000132         4198 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.134, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000132 DAPIWQ010000000
VERSION     DAPIWQ010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4198
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.134"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            12..1175
                     /gene="ftsW"
                     /locus_tag="RJ267_001530"
     CDS             12..1175
                     /gene="ftsW"
                     /locus_tag="RJ267_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HDV7389368.1"
                     /translation="MVADKRLFYLSCILITIGIVFSYSLTAFTVLFLDYSEFHFFIRQ
                     LFFGISGILIMFFISRLDPDKALSKKIILAILIVSFIFIIILPFLPSVLATASGGAKR
                     WIRLGPLSISPVEFFKIGLIYFLAWSYTRRIDDSKKAIRHEALILLPYCILASIVIGY
                     IYITQNDLGQSVISFFLILALAFFAGASKRLFAFGTLIIMMIGIMVIFSNQRRIQRIA
                     SWWGNIQDAFLPMLPDWLANALRVSSNSEPYQISHSLNAIAHGGMFGEGLGLGTFKLG
                     FLSEVHTDFVLSGITEEIGLLGLGVICYIYLWMILRIFRIAGRCEAKQDFIFCSGIAL
                     LLLFSFFMNAFGIISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            1172..2200
                     /gene="murG"
                     /locus_tag="RJ267_001531"
     CDS             1172..2200
                     /gene="murG"
                     /locus_tag="RJ267_001531"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HDV7389369.1"
                     /translation="MTIALTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDKAW
                     FENEVRFKEKFFLSSKGVVNQSKFDKISSLLHTLKLSKDCREIFKKYHIQAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNMLLKPFATKFFSAFEKKISPYPVADKFFD
                     NARIRKELKNIIFLGGSQGAQFINELALNLAPKLQEQNIKIIHQCGKNDFEKCKKHYQ
                     SLNIQADIFDFSLNLEEKMKNADLAISRAGASTLFELCANTLPTIFIPYPYAAKNHQY
                     FNAKFLQDQALCQIFMQNSINLDEFFKSILKLNLENISTRLQNITQKNGADMLIQKAL
                     FDNLTFIR"
     gene            complement(2171..3334)
                     /locus_tag="RJ267_001532"
     CDS             complement(2171..3334)
                     /locus_tag="RJ267_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
                     /protein_id="HDV7389370.1"
                     /translation="MASFKKIFWINVTIVIIVAFNLRAPITAVGPIIDIIKDKYYLNS
                     TVAGILTSLPLIAFGSISFIVGYFSPIRAIVFGIFLIFLGEIIRSYFGVYGLFLGMLA
                     MGCGIAIANVLLPSFIKEKFPKKMASIMGIYSLVLSISSIMGIALAIPLLSVFDLAGA
                     MFFWAIFSFVALVVYYPQAKNGRFFRIKKKTHKKINLFTNLTTWKITLFMGFQSFLAY
                     SLFFWYVQIVVEKGFDKEFSTSMVLFAQLVAAPVSLFGPLLLGKLRQNLHTFYIAGLC
                     SMYVIAFGMLFIFDSKISIIISAFIMGFPWGGVFGIALLFIAQKSSNAQIAARLSALA
                     QGFGYLIAAQGQWIIGFLHDKFENFSFAILMLVFVGILVNIFGYLSYKSQIIK"
     gene            complement(3342..4193)
                     /locus_tag="RJ267_001533"
     CDS             complement(3342..4193)
                     /locus_tag="RJ267_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7389371.1"
                     /translation="MKKYVLSLALLGSLLGASELKYQEFDGFKSPESIFVDKNYVYVS
                     NVGEKLEPLAKDNDGFISKLDKNGKVLEYKFLTHLNAPKGMMEIGKTLYVVDIDVLRG
                     FDLKTKKEIFNLPIKGAIFLNDIEKLDDNTLLVSDTGTGLILKVDLKTKQYDELLKLD
                     LAKFGGPNGLYLDRKKHKLFIAGYHPDGVSGGVVMAYDLNTKELSIIKNEKESYDGIV
                     PYKDGLLVSSWGNNLNGYIYNLDNVKSVKLELPLMKGPADIFIEGNILWIPKMVEGKI
                     FKVELNK"
BASE COUNT         1507 a          685 c          577 g         1429 t
ORIGIN      
        1 ttataattat aatggttgct gataaaagat tattttattt aagttgtatt ttaatcacca
       61 taggaatagt attttcatac tctcttacag cttttactgt tctttttctt gactatagcg
      121 aatttcattt ttttattcgt cagctttttt ttggaattag tggcatactt ataatgtttt
      181 ttatttctcg attggatcct gataaagcac tttctaaaaa aattatttta gctattttga
      241 ttgtttcttt tatctttatc atcattttac catttttacc ttctgtatta gcaacagcta
      301 gcggaggagc taaacgctgg atacgcttag gcccactctc tatctctcct gtggaatttt
      361 ttaaaatagg attgatttat tttttagcat ggagctatac aaggcgtatt gatgatagca
      421 aaaaagctat cagacacgag gctttaattc ttctgcctta ttgcatctta gcttctatag
      481 ttataggata tatttatatc actcaaaacg atttaggaca aagtgtaatt tctttctttt
      541 tgattctagc tttagctttt tttgcaggag ctagtaaaag actttttgct tttggaactt
      601 taatcattat gatgataggt ataatggtaa tttttagtaa ccaaagaaga attcaaagaa
      661 tcgcttcttg gtgggggaat atacaagatg cttttttacc tatgcttcct gattggctgg
      721 caaatgcttt aagagtaagt agcaacagcg agccttatca aatttcacac tctttaaatg
      781 ctatagccca tggaggaatg tttggcgaag gcctaggact tggaactttt aaattaggct
      841 ttttaagtga agtgcatact gactttgttc tttcaggaat tactgaagaa ataggacttt
      901 taggtcttgg ggttatttgc tatatttatc tttggatgat tttaagaatt tttagaattg
      961 caggaagatg tgaagctaaa caagatttta ttttttgttc aggcatagcc ttacttttac
     1021 ttttttcttt ctttatgaat gcttttggta ttatttctct tactccacta aaaggtgtag
     1081 cggttccact tttaagctat ggaggaagtt caatgtgggc aatttgcata ggcataggat
     1141 atgtattaat gatttcaaaa aaggttaaat tatgacaata gctttaacag gtggtggaac
     1201 tggaggacat ttggccatag tgcgttgctt attagaaagt gcgattaaaa aaaatataga
     1261 atgtgtatac ataggcagtc aaaatggtca agataaagct tggtttgaaa atgaagtacg
     1321 ctttaaggaa aaattttttt taagctctaa aggagtggtt aatcaaagca aatttgacaa
     1381 aatcagttct ttactccaca ccttaaaact ctccaaagat tgtagagaaa tttttaaaaa
     1441 ataccacatc caagccgttt ttagtgtagg tggatacagt gcagctcctg catcttttgc
     1501 ggctttattc tcacatttgc ctctttttat acatgaacaa aattcaaaaa gcggctcttt
     1561 aaatatgctt ttaaaacctt tcgctacaaa attttttagc gcctttgaaa aaaaaattag
     1621 cccttatcct gtagcagata aattttttga taatgctagg attcgcaaag aattaaaaaa
     1681 tattattttc ttaggaggat cacaaggagc tcaatttatc aacgaactag ctttaaattt
     1741 agcaccaaaa cttcaagaac aaaatatcaa aatcatccat caatgtggaa aaaatgattt
     1801 tgaaaagtgc aaaaaacatt atcaaagctt aaatatccaa gctgatattt ttgattttag
     1861 tttaaatttg gaagaaaaaa tgaaaaatgc agatctagct atatcaagag caggtgcaag
     1921 tactcttttt gaactttgtg ctaatacttt gcccactatt tttatacctt atccttatgc
     1981 agctaaaaat catcaatact ttaatgctaa atttttacaa gatcaagctt tatgtcaaat
     2041 ttttatgcaa aactctatta atcttgatga attttttaag tcaatattaa aactaaatct
     2101 agaaaatatt tctacaagat tgcaaaatat aacccaaaaa aatggcgcag atatgctaat
     2161 ccaaaaagct ttatttgata atttgacttt tataagataa atatccaaag atatttacta
     2221 aaattccaac aaaaactaac atcaaaatag caaatgaaaa attttcaaat ttgtcatgca
     2281 aaaaacctat aatccattgt ccttgtgctg caattaaata tccaaaaccc tgagctaaag
     2341 cagaaagtct cgctgctatt tgagcattag agcttttttg tgcaataaaa agcaacgcaa
     2401 tgccaaaaac tccaccccat ggaaaaccca tgataaaagc actgataata atagaaattt
     2461 tactatcaaa aataaagagc ataccaaaag cgatcacata catactgcac aaacctgcta
     2521 tgtaaaaagt atgtaaattt tgtcttaatt ttcctaaaag taaagggcca aaaagagaca
     2581 ctggagctgc aacaagttga gcaaataaaa ccatacttgt agaaaattct ttatcaaatc
     2641 ctttttctac aacaatttga acataccaaa aaaacaaaga ataagctaaa aaactttgaa
     2701 atcccataaa aagagtaatt ttccaagttg ttaaatttgt aaaaagattg atttttttat
     2761 gagttttttt cttaatacga aaaaatctac catttttagc ttgaggatag taaactacta
     2821 aagctacaaa agaaaaaata gcccagaaaa acatagctcc agctaaatca aatacactaa
     2881 gcaaaggtat agctaaagca atacccataa tcgaagaaat actcaaaaca agactataaa
     2941 ttcccattat acttgccatt ttttttggaa atttttcttt aataaaacta ggaagtaaaa
     3001 catttgcaat tgctatacca cagcccattg ctaacattcc taaaaataag ccatatacac
     3061 caaaataaga acgaataatt tcgcctaaaa aaattaaaaa aattccaaaa acaatagcac
     3121 gaataggaga aaaatacccc acaataaaag aaatacttcc aaaagctatc aaaggaagac
     3181 ttgtaagtat gcccgctacg gttgagttta aataatactt atctttaata atatcaataa
     3241 taggccccac tgcagtaatt ggggctctaa gattaaaagc tacaataata acaatagtaa
     3301 cattaatcca aaatatcttt ttaaaagaag ccataaaagc cttatttgtt aagttctact
     3361 ttgaatattt taccttctac catcttagga atccataaaa tattaccttc aataaatata
     3421 tctgcaggac ctttcatcaa aggaagttca agttttacag atttaacatt atctaaatta
     3481 taaatatatc catttagatt atttccccaa gaacttacca ataaaccatc tttataagga
     3541 actattccat cataagattc tttttcattt ttaattatac tgagttcttt tgtatttaaa
     3601 tcataagcca ttacaacacc gccacttaca ccatcaggat gataaccagc tataaaaagc
     3661 ttatgttttt ttctatctag atataaccca tttggaccgc caaattttgc taaatcaagt
     3721 tttaataatt catcatattg cttagttttt aaatcaacct ttaaaataag ccctgtgcca
     3781 gtatcgctaa ccaaaagcgt attgtcgtct aatttttcta tgtcatttaa aaagattgca
     3841 cctttaatag gtaaattaaa aatttctttt ttagttttaa gatcaaaacc gcgtaaaaca
     3901 tcgatatcta ccacataaag agtttttcca atctccatca tgccttttgg tgcattaaga
     3961 tgggttaaaa atttatattc tagcactttg ccatttttat caagcttaga aataaatcca
     4021 tcattatctt tcgccaaagg ttcaagtttt tcccctacat tagatacata aacatagttt
     4081 ttatctacaa aaatactttc agggctttta aaaccatcaa attcttgata ttttaattca
     4141 cttgcaccaa gcaaacttcc aagaagcgct aaacttaaaa catatttttt catatttt
//
LOCUS       DAPIWQ010000133         4162 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.135, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000133 DAPIWQ010000000
VERSION     DAPIWQ010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4162)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4162)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4162
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.135"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            1..411
                     /locus_tag="RJ267_001534"
     CDS             1..411
                     /locus_tag="RJ267_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HDV7389372.1"
                     /translation="MKFLNIITILSLSLNADIIISADNLPNVSKEFLQHNFKAPIGIV
                     QKDKNSYEVYLSDGTELEFDIDGAWKEIENKAFPFDLDFLPQNLANIIKNEFPNTKAR
                     EIERKINHYKIKLDNDIKILIDFNGTILYKEFDD"
     gene            complement(420..2036)
                     /locus_tag="RJ267_001535"
     CDS             complement(420..2036)
                     /locus_tag="RJ267_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HDV7389373.1"
                     /translation="MKNKKIILASFMVLCMLLGILYFKNEPKYIDENLYQSLLSQNLI
                     QKAVIDKDEIWLKAEGENYVIIKDGIDIKTLLSKVPVEVKKDNTLWVFFVLLIFIIAL
                     FISLGYFARKKELAKYPISNKNQNHTQAQNSNINLESSHIKPVISNITFNDVAGVDEV
                     KMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG
                     SSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLNQLL
                     TQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKD
                     KNNNINLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFYAVLNKVLLGKK
                     KILSFNNEEKKIQATYQAAKALSAYYFDIGFEKITLIEDRFKEYEHNIRSKSELINRI
                     KVYLAGSRAMRLIYNESYTNSQDDFLKIKELLDYMLSFDMLKESNLSEQKKEMDEFLN
                     SMKDKILKLSELLLEKEKIEYDDVKDIMQV"
     gene            complement(2040..3290)
                     /gene="mtaB"
                     /locus_tag="RJ267_001536"
     CDS             complement(2040..3290)
                     /gene="mtaB"
                     /locus_tag="RJ267_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HDV7389374.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVN
                     SCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTTLGKLLQKMGQILGIKRIRL
                     GSLEPAQLDESFLEILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVING
                     TLAKERLNTLKSIVEKNNYEFRKKNQVSLEVLVENQKDGFFEGYDQFFNKIKIKSDKD
                     IAKEWIVISEYEVQEKSNFTNLKG"
     gene            complement(3287..>4162)
                     /locus_tag="RJ267_001537"
     CDS             complement(3287..>4162)
                     /locus_tag="RJ267_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HDV7389375.1"
                     /translation="IAIAFMLKFIAKKYIKDSERYYTATKIINFININIIFLILLFAY
                     IENITYLVTILGFASAGLAIAMKDMFMSMLGWCVIIFGGSFRVGDRVKVFQNDTTYIG
                     DIIDISFLRITLYEELTLETYNKNRRSGRIIFIPNNYVFTNLLANYTHHGMKTVLDGI
                     DISVTFDSNLDKAQEIVENIVTRHAKGYTELARKNIARLQHEYSIKNPKVEPRFFMFF
                     EHWGMRISAWYMTNAYAALVLRSTISKEIIKEFNKHKDIKIAYPSQNLYLGNLNQNHF
                     EQHHENMYFHARNKD"
BASE COUNT         1411 a          761 c          461 g         1529 t
ORIGIN      
        1 attaaatttt taaatattat tactatttta agcttatctt taaatgctga tataataatt
       61 tctgctgata atttaccgaa tgtttctaaa gaatttttac aacataattt caaagcgcct
      121 atagggatcg tgcaaaaaga caaaaattcc tatgaagtct atcttagcga tggaacagag
      181 cttgaatttg atatagatgg agcttggaag gaaattgaaa ataaagcctt tccttttgat
      241 ctagattttt tacctcaaaa tttagccaat atcatcaaaa acgaatttcc aaatacaaaa
      301 gctagagaaa ttgaaagaaa aatcaaccat tataagatta aacttgataa cgatataaaa
      361 attcttatag attttaatgg aactatctta tataaagaat ttgatgatta aacatatcat
      421 caaacctgca ttatatcttt aacatcgtca tattctatct tttctttttc aagcaaaagc
      481 tctgataatt ttaaaatttt atccttcata gaatttaaaa attcatccat ttcttttttt
      541 tgttcactta aatttgactc tttcaacata tcaaaactca acatataatc aagcaattct
      601 ttaatcttta aaaaatcatc ttgcgagtta gtataacttt cattgtaaat caatctcatg
      661 gctctagaac cagccaaata aacttttata cgattgataa gctctgattt tgatcttata
      721 ttatgctcat attctttaaa acgatcttca atgagagtga ttttttcaaa tcctatgtca
      781 aaataatacg cactcaaagc ttttgcagct tgataagtgg cttgaatttt cttctcttca
      841 ttattaaaac ttaaaatctt tttcttacct aaaagaactt tatttaatac agcataaaaa
      901 tcgctttcct caactaaagc actatttctt cttaaagcat taattgctgc ttcattgacc
      961 aaagtttcaa gccctgctcc actaaaacct acgcttgctt tagcgatttt atttaaattg
     1021 atattattgt ttttatcttt catataaatt tctaaaattt taagtctatc cttaaaatca
     1081 ggcaaagata aaaaaattct cctatcaaaa cgccccgaac gcaataaagc aggatccata
     1141 agttcgattt tatttgtcgc agctataact ataaccccgc tattgtcctc aaaaccatcc
     1201 atttgagtta aaagttgatt taaagtgcta tctctttcaa catttgacat ttctcctctt
     1261 gccttaccta cggcatctat ttcatcaata aaaactatgc taggcgccat cattttagct
     1321 tttgaaaaaa gctctctaac tctttttgca cccataccta cataaatttc aacaaaactt
     1381 gaaccacttt gataaaaaaa tggcacccct gcttctcctg caactgcttt tgctatcaat
     1441 gtttttccta caccaggtgg gcctaccatt aaaacacctt ttggcatttt tacaccaaat
     1501 tctttatatt ttttaggatt ttgtaaaaaa tccacaagtt cgcttagctc cattttaact
     1561 tcatcaacac ctgctacatc attaaaagta atatttgaaa tcacaggttt tatatgggaa
     1621 ctttctaaat ttatatttga attttgagct tgagtgtgat tttgattctt atttgatatt
     1681 ggatatttag ccaactcttt tttacgagca aaataaccaa gacttataaa aagtgcgata
     1741 ataaaaataa gtaaaacaaa aaacacccaa agcgtattat cttttttaac ctctacggga
     1801 acttttgata aaagtgtttt tatatctatg ccatctttta taattacgta attttcacct
     1861 tctgccttaa gccaaatttc gtctttatca atcacagctt tttggattaa attttggctt
     1921 aatagacttt gataaagatt ttcatctata tatttaggtt catttttaaa atataaaatt
     1981 cccaaaagca tacataaaac cataaaagat gctaaaatta tctttttatt tttcattatc
     2041 tagcctttta aatttgtaaa gttagacttt tcttgtactt catattcaga tataacgatc
     2101 cattctttag ctatatcttt atcactttta attttgatct tattaaaaaa ctgatcataa
     2161 ccctcaaaaa aaccatcttt ttgattttct accaaaactt caagtgaaac ttgatttttt
     2221 ttcctaaatt cataattatt tttttctact atggatttta aagtgtttag cctttcttta
     2281 gctaaagttc catttatcac atctttcatg gtagcagaat gcgtgttgtt tctagggcta
     2341 aaaataaaag catggatatg agtgagtgga aattctttaa aatttcttaa agcttcttgc
     2401 catagctctt cactctcgcc tggatgagct actataaaat ccgtccctaa agcatatcct
     2461 ttgcttgcta tagtattaaa aagctttaaa tcattatccg tatgtgatct tcttctcatt
     2521 atacgaagca ttttttcact tgtatgttgc aatgcaatat gcaaatgcct ttcaagccaa
     2581 gcttcatcta agatttctaa aaaactttca tcaagctgtg caggttctaa actacctagc
     2641 cttatgcgtt ttatacctaa aatttgtccc attttttgca aaagcttgcc tagggttgtg
     2701 ccatttttaa gcccatatga acctatatta gtccctgtta aaacaatttc actataacca
     2761 ttagctccca aaatttcaac ctgttttaaa agagcttttt catccacact tcttgatttt
     2821 cccctcacgc taggaataat acaataagaa caagcaaaat cacaaccttc ttgaattttc
     2881 acaaaagctt tggtatgatt ttcatactca caaactatat ctttatcaat aaaatttaaa
     2941 tttccaagtt cataaaaact tgtctttgct cctaaaaatt cattgatttt atctttattt
     3001 gacgctccaa gcactccaaa aacttgcttt ttatctaaaa gctccttacc tttgcttaca
     3061 gcaccacaac ctgtaagtat aactttaatg cctttttttt gcatggtatt tacataagac
     3121 tttatcccgc tatcagctcc atttgtaacc gtgcaagaat ttacaacgat aatttgtgct
     3181 ttattctcat catttataat ctcataatct tttacataac tttttaaaag ctctgtatca
     3241 taaatatttg tgcgacaccc aaaggtttta aaaaaaactt tttctttcaa tccttattcc
     3301 ttgcatgaaa atacatattt tcatgatgtt gttcaaaatg attttgattt aaatttccta
     3361 aatataaatt ttgcgatgga taagcaattt ttatatcttt atgcttatta aattctttta
     3421 taatctcttt gctaatcgta cttcttaata ccaaagccgc ataagcatta gtcatatacc
     3481 atgcagaaat tctcattccc caatgttcaa aaaacataaa aaaccttggc tccactttag
     3541 gatttttaat actatattca tgttgtaaac gagctatatt ttttctagca agctcagtat
     3601 aacctttggc atggcgtgta acaatatttt ccacaatttc ttgagctttg tcaagattgc
     3661 tatcaaaagt aacacttata tcaatgccat caagcacggt tttcatacca tgatgggtat
     3721 aattagcaag caaatttgta aaaacatagt tattaggaat aaatataata cgcccactac
     3781 gacgattttt attataagtt tcaagcgtaa gctcttcata aagagtaatg cgtaaaaaag
     3841 aaatgtctat aatatctcct atataggtag tatcattttg aaaaactttt acacgatccc
     3901 ctactctaaa acttccgcca aaaataatca cacaccatcc aagcatagac ataaacatat
     3961 ctttcatagc aatagctaag cccgcagagg caaaaccaag tatagttaca agataagtaa
     4021 tattttctat ataagcaaag agcaaaataa gaaaaataat atttatatta ataaaattaa
     4081 taatcttcgt agcagtataa tatctttcac tatccttaat gtatttttta gcaataaatt
     4141 tcaacataaa agctatagct at
//
LOCUS       DAPIWQ010000134         4139 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.136, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000134 DAPIWQ010000000
VERSION     DAPIWQ010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4139)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4139)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4139
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.136"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1197)
                     /locus_tag="RJ267_001538"
     CDS             complement(<1..1197)
                     /locus_tag="RJ267_001538"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HDV7389376.1"
                     /translation="MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNL
                     IDESLQFIQDKEYVKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFN
                     KTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLH
                     QEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKK
                     DEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELL
                     NAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPG
                     VEVGKLI"
     gene            complement(1191..2015)
                     /gene="galU"
                     /locus_tag="RJ267_001539"
     CDS             complement(1191..2015)
                     /gene="galU"
                     /locus_tag="RJ267_001539"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HDV7389377.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEAL
                     EAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQ
                     NQMKGLGDAVLKGRPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSNYGVISGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEIQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            complement(2097..4070)
                     /gene="acs"
                     /locus_tag="RJ267_001540"
     CDS             complement(2097..4070)
                     /gene="acs"
                     /locus_tag="RJ267_001540"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HDV7389378.1"
                     /translation="MLNQNNQELFKPSKEFSRNARIKNLCEYYDLCDEAKEDFEGFWK
                     RQAFEKIEWFSPFSRVLNEDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAALIFEGE
                     MGDYEVYTYRRLLHETCKAANLLKKFGVKKGDRVVIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYIKGRDYVYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQISKFYTSPTAIRMLHADAPNEPRKYDLSTLEVLGTVGEPINP
                     SAWKWFYDEIGGTKSPIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNKKDEGEDGLLCITKPWPSMIRGIWGNDERYIESYFSQAKKDGKAVYFSGDGAFY
                     DKNGYITITGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSILDTIKGESLFAF
                     VVLSPASSCDLGGAIETLKELNDILRVEIGPIAKIEKILYTPGLPKTRSGKIMRRILR
                     TIARGEEIKQDISTLEDSKVVETIVKLAKAEFE"
BASE COUNT         1314 a          857 c          551 g         1417 t
ORIGIN      
        1 gatcaacttt ccaacttcca caccaggttg atcataagtg ttaatcccta gcataacacc
       61 gcaagttgaa gtaaaaagtt cataataata catcaaatat cccgcatgcc aagcgtcaag
      121 tttttcaagt tctatcacat caacactcaa attttcagcg attaaagcgt gcatagttgc
      181 atcacattga gcgtttaaaa gttcgtgaag attgacttta ttacttaaag aatctaaaaa
      241 tttaaaatga atatcaggga taataggtgc tttttgagcg tctttgattt ttaaaaaagt
      301 tacagtttta tttttaggtc catccatgat gagttgtaaa aaactatgtt gatctcttgc
      361 gccaatgagt gcaataggag ttaaacctat gcgtttatag ccttgctttt tacctaaact
      421 ttcagcaata agctggatat accattcatt aaagccttta aaagcatcgc tatatgaaaa
      481 aagtacattg atattggcat ttttgtgtgt acaataatga taggcttttt gtaaaatttc
      541 atcttttttg tgagtaaaaa aatcttcaaa acaagcttta gctccttcta aaagagcttt
      601 ggcattatag ccacaaaaac aaagtggaac tatacctacg gctgaaagta tgctaaaacg
      661 acctcctaca tttgcaggga taaaaaagca tttaatacct aaattttcac cttcttgatg
      721 aagttttgaa tccttatcgg taataaaaac aaagtatttt tttaattctt gcatatcaag
      781 tttaaaatgt tcaataagaa gtttaaaaag cgatacaact tctatagtac tacctgtttt
      841 gctgatgatt aaaaacaaac tttcttcaag cttgattttt tctaaagtct tattaaaaga
      901 atgcgagctt gtgttatcga gtataaaaag ctctctttgg ttgctttttt cattaaaaag
      961 catatcacgc aaggctttta caccacaact tgaacctccc attcccacta aaacgatatt
     1021 ttttacatac tctttatctt gaataaattg caagctctca tcgattaaat tcaaacttgt
     1081 gtcaataaga tgataatacc ctatatctcc actttttacc tcatcattaa tacgatttgc
     1141 ataagaactt atagtgtgaa tttcactttg tttaaaaaaa agcgtattgt ttaacattta
     1201 cttttctcgt aaaaataatt tgtcgcctct acaaagcctt ctacacttcc acaatcaaag
     1261 cgtttccctt gaaatttata agctaaaacc ataccattgg ttgcttgagt taaaagcgcg
     1321 tcggtaagtt gaatttcacc attttttcct gctttagtat tttctaaaat tccaaaaata
     1381 tcaggagtta aaatatatct tcctatgata gcaagattac ttggagcttc atcaggactt
     1441 ggtttttcta tcatagaatt aaccatgata agattttctt ctacaaaatt tccagaaatt
     1501 actccatagt ttgaaacttg ctcttttggt acttccatca cagctatgat ggtgcagcga
     1561 tatttttcat aaatttttac catttgagcc ataacattta agccttcttc attaacacac
     1621 aaatcatcag ccaaaattac gccaaaagct tcatcgccaa ccaaaggtct accttttaaa
     1681 accgcatcac ctaagccttt catttgattt tgtcttgtaa aagtaaaggt acaacgattg
     1741 atcaaagagc gaatttcatc aagtaagtat tctttttttg tacctgaaat ttgatgttca
     1801 agttcataag aaatatcaaa ataatcctcc aaagctcttt ttccacgccc tgtgacaaat
     1861 cccatatttt ccattcctgc ttctaaagct tcatcaactc cataatggat caaaggcttg
     1921 gttaagatag gtaacatctc tttaggtaaa gtttttgttg caggtaaaaa tctcgtccca
     1981 taacctgccg cagggaaaat acaagtttga agcataaaaa tttcctttta tttttttatc
     2041 attatagctt atttttatga attttcatgc aacaaggcaa agttcttttt gccttgttat
     2101 tcaaactctg ccttagctaa tttaacaatg gtttctacta ctttagaatc ttcaagtgtt
     2161 gaaatatcct gtttgatttc ttcgcctctt gctatagttc ttaaaattct tctcattatt
     2221 ttaccacttc tagtttttgg caaacctgga gtataaagaa ttttttctat tttagctata
     2281 ggtcctattt ctactcttaa aatgtcatta agttctttta aagtttctat agctccgcca
     2341 agatcacaac tggatgcagg acttaaaacc acaaaagcaa acaatgactc gcccttaatc
     2401 gtatccaaaa tactcactac agctgattct gctacacttg gatgtttagc aatagcgctt
     2461 tcaatttcag ccgttcctat acgatgtcct gcaacattaa ccacatcatc tgttcttcct
     2521 gtgatggtaa tataaccatt tttatcataa aaagcaccat cgccactaaa atatacagct
     2581 tttccatctt ttttagcttg agaaaaataa ctttctatat agcgttcatc attgccccaa
     2641 attccacgaa tcatcgaagg ccaaggttta gttatacaaa gcaacccatc ttcaccttca
     2701 tcttttttat tgccttcttc atcaataact tccgcaaaaa tccctggcaa aggcaaggtg
     2761 gcacaacctg gttttaaagg agtggcgcct ggtaaaggcg tgatcatatg cccacctgtt
     2821 tctgtttgcc accaagtatc gactatagga cttttagttc cccctatttc atcataaaac
     2881 cacttccaag cactaggatt gataggctct ccaaccgttc caagcacttc aagcgtactt
     2941 aaatcatatt ttcttggctc attaggtgca tcagcatgaa gcattcttat ggcagttggc
     3001 gaagtgtaga atttgcttat ttgatactct tctatcattc tccaccaacg cccagaattt
     3061 ggataagtag gagttccttc atgcattata gtcgttgccc cacatgctaa aggcccataa
     3121 actacataag tatgtcctgt aatccaaccc acatcagcac tacaccaata attatcataa
     3181 tctttaatat caaaaaccca ttccatagtc atttgtgccc aaagtatata tcctgcactt
     3241 gcatgcataa ctccttttgg cttgcccgtt gatcctgaag tgtaaagcaa aaacaacaaa
     3301 tcctcactat ccataatttc gggttcacac ttataagact catttttcac aagttcgtta
     3361 taaacatagt cccttccttt aatatattct ataggctcat tattgcgtat aactataagt
     3421 actttttcta cactttcaca cccttcactt aaagccttat ctactgcagg ttttaacata
     3481 taaggtttgc cacgacgaaa agcaccatca gccgttacta caagtttagc tcctgcatct
     3541 ataattctat ctcttaaggc ttcaggagaa aaccctccaa atactacact atgaatagcc
     3601 ccaatccttg cacaagctaa cattactata gctgtttctg gaatcatagg catataaatt
     3661 acaaccctat cgcctttttt tactccgaat tttttaagca aattggccgc cttgcaagtt
     3721 tcatgcaata atcttctata agtataaact tcataatccc ccatttcacc ttcaaaaatc
     3781 aaagcagctt tattgcgtct tgttttcata tgacgatcaa gacattgata acttacattt
     3841 aaagttccac cttcaaacca tttataaaat ggagctttat cctcatttag cactcttgaa
     3901 aaaggcgaaa accactcaat cttctcaaat gcttgtcttt tccaaaaacc ttcaaaatct
     3961 tccttggctt catcgcataa atcatagtat tcacataaat tttttatacg agcattacga
     4021 gaaaattctt tacttggctt aaaaagctct tgattatttt gattaagcat aaaaactcct
     4081 ttatggttgt ttttaaacat tatataagag tttatttgta ttaaatacaa atttaaaaa
//
LOCUS       DAPIWQ010000135         4130 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.137, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000135 DAPIWQ010000000
VERSION     DAPIWQ010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4130
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.137"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            128..703
                     /locus_tag="RJ267_001541"
     CDS             128..703
                     /locus_tag="RJ267_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HDV7389379.1"
                     /translation="MKKIFISFVVLATCLWAKNTAYTDEVVSLYLNKDDTKVIGRLLP
                     TNPFEVLKSENNRVLLKIDGYVNPKAPSVIYFNDSQRIIVAAFSKNTKLNFSQRITGK
                     NGKWDKVSLEIWADKKEFVKDNKEMLNRAKELFVNNCGICHAIHKEKEFTANAWPAIF
                     RSMADRTGIDKKDRWLVIEYLQKNAKDFKTK"
     gene            714..3230
                     /locus_tag="RJ267_001542"
     CDS             714..3230
                     /locus_tag="RJ267_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HDV7389380.1"
                     /translation="MLDRRKFLKIGASLSALPLIPSLSAGKTVEASKVSLGLVKNGEV
                     ITAAHWGILKLTIKDGKIVKSEPWEKVTKMDNPLQHYTADMVYKSRVKYPYVRKSYLE
                     NPDNPKPELRGKDEFVRVSYDEAIKLIAKELKKTRDSKGASAIFGGSYGWKSSGNMQN
                     SRILLHRFLNVTGGFVGATGDYSTGASQVIMPYVVGSIEVYEQQTSWENILSDSKYVV
                     IWGADPLSTLRIAWTSNEQRGLAYFEKLKNSKIKVICIDPVKTTTAKFLNAKWIAPRP
                     NTDVALMMGMASHLIAKKKVNYEFLDTYTTGFDKFKDYLEGKEDGVKKDTKWASKICG
                     IDEKTIKNLAETFYDNPTMIMSGWGMQRAHHGEQPHWMLVTLCAMLGQIGTKGGGFGL
                     SYHYSNGGVPTCKGGVIGGMTAGSLGIWKNGKFKGLSKAEASSEGAEWLQNAASYSFP
                     VARIADALLHPGKTIDHNGAKITYPDIDFIYWVGGNPLVHHQDTNTNVKAWRKPRTVV
                     VNEIYWTPTAKMADIIMPVTSSYERDDITMTGDYSNMHIAPMKQAVEPVGESKDDYVI
                     FSDICKIYGKDVFNAYTENGKKAKDFIKEYYNSALKQTQSFGEAFATPMPSFEEFWAK
                     NKPITFEPTAESLEWTRFSEFIEDPILNALGTDSGLIEIYSETIKNYNYDDCKAHPTW
                     FEPIEWLGNASKEAPFHLLTNHPRDRLHSQLCHTSLRDTYAIKDREPILINSKDAKKL
                     GIKNGDVVRVFNKRGEVLAGAVVNDEIMQGVVRLCEGAWYDPNENGLCKCGNANVLTM
                     DIPTSKLANGNISHTGLVNIEKFKGELPKLTAFSVPKGAN"
     gene            complement(3254..4129)
                     /gene="zupT"
                     /locus_tag="RJ267_001543"
     CDS             complement(3254..4129)
                     /gene="zupT"
                     /locus_tag="RJ267_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HDV7389381.1"
                     /translation="MQFTFEQIFIAILLTLFAGFSTAIGSTIAFFSRKDDLRVLSLGL
                     GFSAGVMIYISFMEILPTALKDFKNHYDSHWAELLGLACFFGGILISLLIDKLIPEDV
                     NPHEPKEDLSELKICPLPQKGQNPPKFHPGEKLHQINTKALKRTGIFTALAIAIHNFP
                     EGFATFISSLDNLTLGIAIAIAVAIHNIPEGLAVSLPIYHATGDKKKAFIYSALSGLA
                     EPLGAFVGALILLPFIGDLTLAISFAVIAGIMVFISLDELLPAAKTYDKAHDSLYGLI
                     AGMAIMALSLNLLGQ"
BASE COUNT         1518 a          676 c          772 g         1164 t
ORIGIN      
        1 tatcaataaa gaataatatt aaagcaccaa aaataagtaa tcttagtaaa aattatacaa
       61 ttaagtaata attaaattgc atagtattaa aatacattta catcaaattt atattaagga
      121 attagtaatg aaaaaaattt tcatttcttt tgttgtccta gcgacatgtt tatgggcaaa
      181 aaataccgcc tataccgatg aagttgtatc gctttatctt aataaagatg atactaaagt
      241 cataggaaga cttttaccta caaatccttt tgaagtatta aaaagcgaaa ataacagggt
      301 tttgctaaaa attgatggtt atgtaaatcc taaagcacct tctgtgattt atttcaatga
      361 ctctcaaaga attattgttg cagctttttc taaaaataca aaattaaatt tctctcaaag
      421 aataactgga aaaaatggca aatgggataa ggtaagcctt gaaatttggg cagataaaaa
      481 agaatttgtc aaagacaata aagaaatgtt aaatcgagcc aaagagcttt ttgtaaataa
      541 ctgcggaatt tgccacgcta tccacaaaga aaaagaattt acagctaatg cttggcctgc
      601 aattttccgt tctatggctg atagaacagg tattgataaa aaagacagat ggctagttat
      661 agaatactta caaaaaaacg caaaagattt taaaacaaaa taaggagaaa agcatgctag
      721 atagaagaaa atttttaaaa attggagcga gcttaagtgc tttacctctc attccaagct
      781 taagtgcagg aaaaaccgta gaagcttcaa aagttagcct cggacttgta aaaaatggag
      841 aagtgatcac cgcagcacac tgggggattt taaaacttac tataaaagat ggcaaaatag
      901 taaaaagtga accttgggaa aaagttacaa aaatggataa tcctttacag cactataccg
      961 ccgatatggt ttataaatct cgtgtgaagt acccttatgt gcgtaaatcc taccttgaaa
     1021 atcctgacaa tcctaaacct gaacttcgcg gaaaagatga gtttgttcgc gtaagttatg
     1081 atgaagcgat caaactcatc gccaaagaac ttaaaaaaac aagagatagt aaaggcgcaa
     1141 gtgcgatttt tggtggaagt tatggctgga aatcaagtgg aaatatgcaa aactcacgta
     1201 tcttgcttca tagattttta aatgtaacag gtggatttgt aggagctaca ggggactatt
     1261 ctacaggagc ttctcaagtg attatgcctt atgttgtagg atcgattgaa gtttatgagc
     1321 aacaaacctc atgggaaaat atcttaagcg attctaaata tgttgtgatt tggggtgctg
     1381 atccgctttc tactttacgc atagcttgga cttcaaacga acaaagaggg ttggcgtatt
     1441 ttgaaaaact taaaaacagt aaaatcaaag tgatttgtat agatcctgta aaaaccacta
     1501 cagcgaaatt tttaaatgcc aaatggatag ctccacgccc aaataccgat gtggctttaa
     1561 tgatgggtat ggcaagccat ttaatcgcta agaaaaaagt caattacgag tttttagaca
     1621 cttacaccac tggctttgat aaatttaaag actatttaga aggcaaagaa gatggagtta
     1681 aaaaagatac caaatgggca agtaaaattt gtggtatcga tgaaaaaact atcaaaaatt
     1741 tagctgaaac tttttatgat aatcctacta tgattatgag tggttggggt atgcaaagag
     1801 cacatcatgg agaacagcct cactggatgc tagttactct ttgtgcgatg ttaggacaaa
     1861 tcggcacaaa aggaggtggt tttggactaa gctaccatta tagcaatggc ggtgttccaa
     1921 cttgcaaagg cggagtgatc ggtggtatga cagcaggtag cttaggaatt tggaaaaatg
     1981 gtaaatttaa aggcttaagc aaagcagaag cttcaagcga aggtgcagaa tggcttcaaa
     2041 atgcagcgag ttattctttc cctgtagcaa gaatcgctga tgctttactt catcctggaa
     2101 aaaccataga tcataatggt gctaaaatca cttatcctga tattgatttt atctactggg
     2161 taggtggaaa tcctttagtg catcatcaag ataccaacac taatgtaaaa gcatggagaa
     2221 aaccacgcac cgttgtggta aatgaaattt actggactcc aacagctaaa atggcagata
     2281 ttatcatgcc tgtaacttca tcttacgaaa gagatgatat taccatgaca ggagattatt
     2341 caaatatgca tatagctcct atgaaacaag ccgttgagcc tgtgggtgag agcaaagatg
     2401 attatgtaat tttctctgat atttgtaaaa tttatggaaa agatgtcttt aatgcctaca
     2461 cagaaaatgg caaaaaagct aaagatttca tcaaagaata ctacaacagt gccctaaaac
     2521 aaactcaaag ttttggcgaa gcttttgcca ctcctatgcc aagttttgaa gaattttggg
     2581 ctaaaaataa accaatcact tttgaaccaa cagctgaaag tttagaatgg actcgttttt
     2641 cagaatttat agaagatcct atcttaaatg ctctgggtac agattcagga ctcattgaaa
     2701 tttactcaga aacgattaaa aattataatt atgatgattg taaggcacat cctacttggt
     2761 ttgagcctat tgaatggctt ggaaatgcaa gcaaagaagc acctttccac ttacttacaa
     2821 atcacccaag agatcgcttg cactctcaac tttgccacac aagcttaaga gatacttatg
     2881 caataaaaga tagagagccg attttaatca attccaaaga tgcaaaaaaa cttggtataa
     2941 aaaatggcga tgtagtgcgt gtgtttaaca aacgcggtga agttttagca ggggcggttg
     3001 taaatgatga aatcatgcaa ggggttgtaa gactttgcga aggtgcttgg tatgatccta
     3061 atgaaaacgg actttgcaaa tgtggaaatg caaatgtttt aaccatggat ataccaactt
     3121 caaaacttgc caatggcaat atctctcaca cagggctcgt aaacatagaa aaatttaaag
     3181 gtgaactacc aaaacttact gccttcagcg tgccaaaagg tgcgaattaa atttaagaaa
     3241 gccgcaaggc tttctattgt ccaagcaaat ttaaacttaa agccattatt gccattcctg
     3301 cgataagtcc atataaacta tcatgagcct tatcataagt ttttgcagcg ggcaaaagct
     3361 catcaaggga tataaaaacc ataattcctg caatcacagc aaaacttata gctaaagtaa
     3421 gatcgcctat aaaaggcaat aaaatcaaag ctccaacaaa agcacccaaa ggctctgcta
     3481 aacccgaaag agctgaataa ataaaagctt ttttcttatc tcctgtagca tggtaaattg
     3541 gcaaactcac agccaaacct tcagggatat tgtgtatagc cacagctata gctatagcaa
     3601 ttcctaaagt aagattatca agacttgaaa taaaagtagc aaaaccttct gggaaattat
     3661 gtatagcaat agctaaagct gtaaaaatcc ctgtgcgttt taaagcttta gtattgatct
     3721 gatgcaactt ttctccagga tgaaatttcg gaggattttg tcctttttga ggtaaaggac
     3781 aaatttttaa ctcgcttaaa tcttctttag gttcatgagg attaacatct tcggggatta
     3841 atttatcaat caataaagat attaaaattc caccaaaaaa acaagctagt cccaagagct
     3901 cagcccaatg tgaatcatag tgatttttaa aatctttaag tgcagtaggt aaaatttcca
     3961 tgaaagaaat atatatcatt actccagctg aaaaaccaag tcctaaagaa agcactctta
     4021 aatcatcttt tctggaaaaa aaggctattg tagaacctat agctgtagaa aaacctgcaa
     4081 aaagagtcag tagtattgct ataaaaattt gttcaaatgt aaattgcatt
//
LOCUS       DAPIWQ010000136         4109 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.138, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000136 DAPIWQ010000000
VERSION     DAPIWQ010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4109)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4109)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4109
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.138"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(78..647)
                     /gene="efp"
                     /locus_tag="RJ267_001544"
     CDS             complement(78..647)
                     /gene="efp"
                     /locus_tag="RJ267_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HDV7389382.1"
                     /translation="MASYSMGDLKKGLKIEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDDDVGE
                     AKKWMLDGMMVDVLFHNGKAIGVEVPQVVELKIIETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            761..1081
                     /gene="rnpB"
                     /locus_tag="RJ267_001545"
     ncRNA           761..1081
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="RJ267_001545"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(1079..1354)
                     /locus_tag="RJ267_001546"
     CDS             complement(1079..1354)
                     /locus_tag="RJ267_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389383.1"
                     /translation="MKQWLSDFKLALIQEDVNKLENLLDELDMKAFIKNLAKESPSED
                     FLKENANDVFYQVQALLQEAVILIEQKKKTKAVEIQKFQKALTYFKS"
     gene            complement(1335..1721)
                     /gene="fliS"
                     /locus_tag="RJ267_001547"
     CDS             complement(1335..1721)
                     /gene="fliS"
                     /locus_tag="RJ267_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HDV7389384.1"
                     /translation="MQNNLAYNAYSQNQVGIESPQKLIEMLYEGILRFCARAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLNYEKGGEVAHYLSGLYTREIQLLSLANLENNEDR
                     INEVINVTKGLLEAWREVHNNETVAQ"
     gene            complement(1733..3664)
                     /gene="fliD"
                     /locus_tag="RJ267_001548"
     CDS             complement(1733..3664)
                     /gene="fliD"
                     /locus_tag="RJ267_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HDV7389385.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSQGLANDSGFINANLAGTTDLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDAQGQYQSDPEA
                     EKIFSNLGWELDKTTQTIDPAKDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTV
                     TDLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGT
                     KGTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAG
                     TLSFDSSKFEQKVKEDPDSTESFFSNITKYEDINHTGEVIKTGSLSKYLNSNGGNTNG
                     LEFKPGDFTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQNLANHINSKGIEGLKVKV
                     ESYNQNNVTGFRLNFSGDGSSDFSIKGDANILKELGLSDVNITSKPIEGKGIFSKLKA
                     TLQEMTGKDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKL
                     NQQLNTVTNMINAANNSNN"
     gene            complement(3667..4032)
                     /gene="flaG"
                     /locus_tag="RJ267_001549"
     CDS             complement(3667..4032)
                     /gene="flaG"
                     /locus_tag="RJ267_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella length regulator FlaG"
                     /protein_id="HDV7389386.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASLNIQTDRSQSQGGDDGQ
                     QRGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
BASE COUNT         1253 a          789 c          551 g         1516 t
ORIGIN      
        1 aatgagaaat taagtaacaa aataaatttt atataaattt aaaaaagcct tggaatagtc
       61 caaaagcttt ttttgtatta tttgttcgct ctttctatat actcaccacg cacagtatca
      121 acgcgtataa cttcaccttc taacacatga aaaggaattt gcactactgc gcctgtttcc
      181 aatgtagccg gttttttatt tgatccttga gtatcaccct taaaatttgg agctgtttcg
      241 atgattttga gttcaacaac ttgtggaact tctacgccga tagctttacc attatggaaa
      301 agcacatcta ccatcatacc atcaagcatc cattttttcg cctcacctac atcatcatca
      361 ctaatagcta cttgttcata tgtttgcgta tccataaatt ggcaattttc accatcatca
      421 taaagatact gcatagtttt atcttctaaa tttggagctt cacatttatc acctgcatgg
      481 aaagtttttt caagtacttt accatcaata aaagatttga ttttaatacg cacaaaagca
      541 ggacctttgc ctggttttac atgctgatac tcaactattt taaaaggaat tccatcgatt
      601 tctattttaa gtcccttttt taaatcaccc attgaataag atgccataaa tttcctttgt
      661 taaaaaataa aaaacaattt tatcaaattt tgattgatat cacaataaaa ttattttatt
      721 tgatgaaaaa ataagtaaaa ttacgttaaa atccaaattt aaagcatagt aaatgctcgc
      781 ttctttttag gagaggaaag tccgagctgc taaagacaaa cattccatct aacagatggc
      841 tagggtaacc taagggatag tgcaacagaa agaaaactac cacgcaagtg gaaaaggtga
      901 aacggcgggg taaaagccca ccagcgattt tggtaacaat ttcggctatg taaacccaat
      961 gtgcagcaag aagggatggt tagcgtcttt gttttaaccc ttcgcttgat tttgtttgca
     1021 aaaacaaaac tagataaatg agcattcaag acagaactcg gcttatcgct atgctttttt
     1081 aagatttaaa atatgtcaac gctttttgaa atttttgaat ttcaacagct tttgtttttt
     1141 tcttttgttc aatcagtata acagcttctt gcaaaagagc ttgaacttga taaaatacat
     1201 catttgcatt ttcttttaaa aaatcttctg aaggcgattc tttggctaaa tttttaataa
     1261 aagctttcat atcaagttca tcaagtaaat tttcaagttt attgacatct tcttggatta
     1321 atgcaagttt aaaatcactg agccactgtt tcattgttat gcacttctct ccaagcttct
     1381 agcaaacctt tggttacatt tataacttca ttgattctat cttcgttatt ttctaaattt
     1441 gccaaagata aaagttgaat ttctcttgta taaagcccgc ttaaataatg tgccacttct
     1501 ccgccttttt catagtttaa agtattaata agctctataa aaatagccgt ggttcttttt
     1561 acaaaataca ctctttgttc tatatcttca tttcttatgg ctactttagc tcttgcacaa
     1621 aaacgcaaaa ttccctcata aagcatttca ataagttttt gcggggactc tatccccact
     1681 tgattttgag aataagcatt ataggctaaa ttattttgca tcttttttat ccttaattat
     1741 tagaattgtt tgccgcatta atcatattag tcacagtatt tagctgttga ttgagtttat
     1801 ttaaaatact ctcatattgc aaccattgat tcgccattgt atcatatctt gtatcaatca
     1861 tagcctgagt cgagtcttta gaggtattta atgatttaat atcatttgtc aaactctcat
     1921 catattttgt aattgaacca tcttttccag tcatctcttg caacgtggct tttaattttg
     1981 aaaaaatacc tttaccttct ataggcttag aggttatatt tacgtcagac aaacctaatt
     2041 ccttgagaat gttagcatct cctttgattg aaaaatccga gctaccatct ccactaaaat
     2101 tcaacctaaa ccctgtaaca ttgttttgat tataggattc aaccttaact tttaagcctt
     2161 caataccttt actgtttata tgattagcta aattttgaag caattcttcc tctgttttcc
     2221 ctgttaattt aaaattagta ccatcagaat ttttagacaa atcatatgtt tgattattaa
     2281 aaactatagt aaaatctcct ggtttaaatt ctaaaccatt agtattacct ccattggaat
     2341 taagatattt acttaaactt cctgtcttaa ttacctctcc tgtgtgatta atgtcttcgt
     2401 atttagtaat atttgaaaaa aaactttcag tagagtctgg atcttcttta actttttgtt
     2461 caaatttaga agaatcaaaa ctcaaagtgc ctgcatcatt taaacttaag ccaaaatcct
     2521 gcatagaaag cataacctta gtgtttactt tattaccatt tgcatcttca gtagttccat
     2581 caacaacttg agaatcaaac aaatcagcaa gaatgcttga gcgtattgaa tttacttcac
     2641 tgatgccttg taaagttcct tttgttccag tttcactatt atagtcagtt gcagcattaa
     2701 gattggttac taaatcatta taagcatcca ccaaatcttg catggctttt gtcacacctt
     2761 caaaatcttg ctgtacatca aaattaattt cacctgtttt atttaaagtt aaagtcattc
     2821 ctacaccaag atcggtaaca gtattacttg atctaaacat cttaatacca tcaagtgtga
     2881 attctgcatt ttgcgcagtt tggatatgca aagaagcatc cttaatacca taaccttttt
     2941 tatccttagc tggatcaata gtctgagtcg ttttatctaa ttcccatcca agatttgaaa
     3001 atattttttc tgcctctgga tcactttgat actgaccctg cgcatctttt tttccagcat
     3061 agaaacttat cgcactgtct tcgcctgttt ctttactggt taaagttaag cggtaaggag
     3121 tgcctttctc tcctgtgttt acaatcttag cgacaatctc tcctccacta gcttcattaa
     3181 ttttatcagc taaatctcta taggttgtgt ttttatctac cgtaacagta tattctttgc
     3241 catttgaaaa aaaagtaaga tcggtggttc cagctaaatt tgcattaata aaaccactgt
     3301 catttgccaa tccttgactt tgatatacat ctttttgtgc aagttgagta acattgatat
     3361 tcatgctttg taaagcaaca cccgaattaa ctgtaagact tgctggagga ttatcgctaa
     3421 tacttcctac aacttttctt ttcgcaaaaa ccgtagcatc agctaatgat gaaacagccg
     3481 tctgaaaact tagtaattta gttttgattt ctgttaaatc tttttgtttg gttgtatttt
     3541 cttcaatttt tttagtataa ggatcaatac gagctttttg ctctgcttct tttaatttat
     3601 ctatagtatc ttgagttaaa accccagaac caaatcctaa actagataga ctaccaaatg
     3661 ccatttttaa ctctccttat caaatatcat tcctatcaca tccctaaaat actcagctaa
     3721 tctcatagct tcttcgctag gaatttgacg gatttccctt ccagtacttt tttcagtcac
     3781 gctaatatac atagaaccga ttttatcact ataaccaaaa cgaacattgg tatctagaga
     3841 atccatttgc tcatttaact tttttgtaat atcagctaac ttttcactca cacctcgttg
     3901 ctgtccatca tcgcctcctt ggctttgact tctatcggtt tgaatgttta aactagcctg
     3961 tgtctcactt gttctttggc taatgtttgc caaagctgta tccatttgcc catttgcctt
     4021 cgatatttcc attttaaaat cctttttaaa atttcctatt gctagttaaa agcttatatc
     4081 gacaaattta taaatttatg aacacctat
//
LOCUS       DAPIWQ010000137         4066 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.139, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000137 DAPIWQ010000000
VERSION     DAPIWQ010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4066)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4066)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4066
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.139"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            32..806
                     /locus_tag="RJ267_001550"
                     /pseudo
     CDS             32..806
                     /locus_tag="RJ267_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344803.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
     gene            859..1620
                     /locus_tag="RJ267_001551"
     CDS             859..1620
                     /locus_tag="RJ267_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HDV7389387.1"
                     /translation="MQKLVEQVWDYTKHAKFYSYRPNYAPKTIDMLISLVGKKDIKVA
                     DIGAGTGNLSIMLLERGCKVVSVEPNDAMREIGIERTKDQKIDWVRATGLNSTLQNSE
                     FDWVTFGSSFNVMDRNEALEEAHRLLKSEGYFSCMWNHRDLNDPVQKIAEDTIVEFVP
                     NYTRGTRREDQRPIIESRKDLFDNIVYIEEDFYFHQSIENYINAWKSVKNPYWDLETD
                     EGNELFNKISNKISQRLPKEFSIKYTTRCWSAKKI"
     gene            1635..3974
                     /locus_tag="RJ267_001552"
     CDS             1635..3974
                     /locus_tag="RJ267_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389388.1"
                     /translation="MAELKFKTKAQNLKNLQTKLKKAKVLPLVLTSLEELISNEDKVL
                     QDIQTLKANRLIIRSSSLSEDSMKNSNAGAFLSLANIKADSKDELLKALYEVANSMPS
                     KSDEILVQPMLENITLCGVGFSVDKDNFSPYFCLQYDENGSNSSITDGSSKSAKTYYH
                     YRNYLEFKDIRLQKIIELIKELEVLYDCHFLDVEFAFAIQDDKEELFCLQVRPLVMHE
                     KNNLFHSLPKEALYRFYKRFESLKESRSRVLGDKAIFGVMPDWNPAEIIGLRPKRLAF
                     SLYKEIITDNIWAYQRDNYGYRDLRSHPLIHSFLGIPYVDVRLSFNSFIPKKLDENIA
                     QKLVNFYLDKLNKNHELHDKIEFNIVYSCYDFNSSKKLEELLNHGFNENEIKRLEFSL
                     LELTNKIINPRSGFYLKDIQKAYKLKERYDGIINSNFSLIDKIYWLIEECKRYGTLPF
                     AGVARAAFVAMQLLNSLVEIDFITKEEKDDFLNSLNTVSKNLSKQTNHLNFHNKDQFL
                     KDFGHLRAGTYNILSPRYDEDFELYFDADQKDSKVYLQDKAFVFSEEKTRALNALLKE
                     HGLEINACEFFDFLKQAIEGRELVKFEFTRLLSKAIVYIEELGKYYDIEKEDLAHLDI
                     KSILNLYSSLYSINPKEQFIEEINRNKKEYELTQAIKLPSLLCNADEIFSFYNHSIIP
                     NFITQKSIAAFTAKENDKDLEGKIVLIYAADPGYDYLFTKNIAGLITCYGGANSHMAI
                     RASELGMPAVIGVGEENFEKYLKAKKINIECESEQIFCL"
     gene            3965..>4066
                     /locus_tag="RJ267_001553"
     CDS             3965..>4066
                     /locus_tag="RJ267_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HDV7389389.1"
                     /translation="MFIGITQRLICNDSYHEKRECLALDWGKLFNKDL"
BASE COUNT         1529 a          474 c          734 g         1329 t
ORIGIN      
        1 attatgtttt aatttagaaa aaggaatgaa tatgaaacaa ggggatttta caaaagttgc
       61 aaaacattat cacaatagac ctgcttatag tccgttttta cttgaaaaac ttgtagcttg
      121 tatcaatgat aaaaataaaa atttaaaaga tttaaatatt gttgaagtag gagctggaac
      181 tggaaaactt actaagatgt tgggagaaat gtttggatgc caaattagtg ctgtggaacc
      241 aaacgataat atgcgtgaag aagggcaaaa atttacacaa aatttatcaa atatttcttg
      301 gcataaaggg agtggcgaag aaacctgcat gagcaataat caagctgatt gggtcatcat
      361 ggctagttct ttccattgga cagatcctaa aaaatctctc ccagaattta atcgtatatt
      421 gacagggggg ggggtatttt actgcgattt ggaatcctcg ccacattgta gagggttcgg
      481 tttttgatga aattgaaaag gagattaaac atattgttcc agatcttgct cgtgtaagca
      541 gtggcactca aaatgttaaa aaatgggaag aaattcttgt ttcaacagga gatttcatag
      601 actgcttttt tatggagtgt gactataaag agttttggga taaagagcgt tatcttggag
      661 cttggcattc tgtaaatgat atacaagcac aagcaggtga aaaaagatgg aaggaaattt
      721 tagagatgat agaagctaaa atttctcata tgcaaagtat agagattcct tataaaataa
      781 gagcatggac agctagaaaa gcataaaata cctccttttt ttcatcaagc ttgtcaaaga
      841 tgaaaaaaag gaaataaaat gcaaaaacta gtagaacaag tgtgggatta taccaagcat
      901 gctaaatttt atagctatag accaaattat gctccaaaaa ctatagatat gcttattagc
      961 ttagttggaa aaaaagatat taaagtcgct gatatcggtg caggaactgg aaatttaagc
     1021 attatgcttt tagaaagagg atgtaaggta gtatctgtag aaccaaatga tgcgatgcgt
     1081 gagatcggga tagaaagaac caaggatcaa aagattgact gggttagagc aacaggctta
     1141 aactcaacac tccaaaatag tgaatttgat tgggtgactt ttggtagtag ttttaatgta
     1201 atggatagaa atgaagcctt agaggaagcg catcgcttat taaaatcaga gggatatttt
     1261 tcttgtatgt ggaatcacag ggatttaaac gatcctgtgc aaaaaatagc tgaagatact
     1321 attgtagaat ttgtaccaaa ttatacaagg ggaacaagaa gagaagatca aagaccaatt
     1381 atagagagtc gaaaggatct ttttgataat attgtttata ttgaagagga tttttatttt
     1441 catcaaagca ttgaaaatta tattaatgca tggaagagtg ttaaaaatcc ttactgggat
     1501 ttggagactg atgaaggaaa tgaacttttt aataaaatta gtaataaaat ttcacaaaga
     1561 cttcctaagg aatttagcat aaaatatacc actcgttgtt ggagtgctaa aaaaatataa
     1621 aactaaggaa aaacatggcg gagttaaaat ttaaaaccaa agcacaaaat ttaaaaaatt
     1681 tacaaacaaa attaaaaaaa gcaaaagttc tacctttggt tttaacttcg cttgaagaat
     1741 taatatcaaa tgaagataaa gttttacagg acattcaaac cttaaaggct aatagactca
     1801 ttataagaag ttcttcttta agtgaagata gcatgaaaaa ctccaatgca ggtgcttttc
     1861 tttctttggc aaatattaaa gctgattcta aagatgagtt attaaaagct ttatatgaag
     1921 ttgccaattc tatgccatca aaaagtgatg aaattttagt tcaacctatg cttgaaaaca
     1981 ttactctttg tggagttggt tttagtgttg ataaggataa tttttcccct tatttttgtc
     2041 ttcaatatga tgaaaatggt tcaaatagct ctattacaga tggaagcagt aagagtgcaa
     2101 aaacttacta tcattacaga aattatttag aatttaaaga tattagactt caaaaaatta
     2161 tagaacttat aaaagaatta gaagttttat atgattgtca ttttttagat gttgaatttg
     2221 catttgctat tcaagatgat aaggaagaac ttttttgctt acaagtgcgt cctttggtta
     2281 tgcatgaaaa aaataattta tttcattctt taccaaaaga agctttatat agattttata
     2341 aacgttttga gtctttaaaa gaatcaagat ctagagtttt gggagataaa gctatttttg
     2401 gggtaatgcc tgattggaat ccagctgaaa tcatagggtt aagacctaag cgtttagctt
     2461 ttagtttata taaagaaatc attacggata atatctgggc gtatcaaaga gataattatg
     2521 gttatagaga tctaagatcc catcctttaa tccattcttt tttaggcatt ccttatgtgg
     2581 atgtaagatt atcttttaat tcttttatac caaaaaaatt agatgaaaat attgcacaaa
     2641 aacttgtcaa tttttactta gataagctta ataaaaatca tgaattgcac gataagattg
     2701 aatttaatat tgtttattct tgttatgact ttaatagttc taaaaaatta gaagaacttt
     2761 taaatcatgg ttttaatgaa aatgaaatca aaagattaga attttcatta ttagaactta
     2821 caaataagat tattaatcct agatcagggt tttatttaaa agacatacaa aaagcttata
     2881 agctaaaaga aagatatgat ggcattatta attctaattt ttctttaatt gataaaattt
     2941 attggcttat tgaagaatgc aagcgttatg gaaccttgcc ttttgctggg gtggctaggg
     3001 ctgcatttgt agcaatgcaa cttttaaatt ctttagttga gattgatttt ataaccaaag
     3061 aggaaaaaga tgatttttta aattcactca atacagtgag caaaaattta agcaaacaaa
     3121 caaaccatct taattttcac aacaaagatc aatttttaaa agattttgga catttaagag
     3181 caggaactta taatatttta tcgccaaggt atgatgaaga ttttgagctt tattttgatg
     3241 cagatcaaaa agatagtaaa gtttatttac aagataaagc ttttgttttt tcagaagaaa
     3301 agacaagagc tttaaatgct ttacttaaag aacatggact agaaattaat gcttgtgaat
     3361 tttttgattt tttaaaacag gctatcgagg gtagagagct cgttaaattt gaatttacta
     3421 gattgctttc taaagccata gtttatatag aagaattagg caaatattat gatattgaaa
     3481 aagaagattt ggctcatctt gatataaaaa gcattttaaa tctttattct agtctttatt
     3541 ctataaatcc aaaagagcag tttatagaag aaattaatcg caataaaaaa gaatatgaac
     3601 ttacacaagc tataaaactt ccttctttac tttgtaatgc tgatgaaatt ttttcttttt
     3661 ataatcatag cattattcca aattttatta cacaaaagag cattgctgca tttacggcga
     3721 aggaaaatga taaagattta gaaggaaaga ttgttttaat ttatgcagca gatcctggat
     3781 atgattattt atttacaaaa aatatagcag gacttattac atgttatggg ggtgctaatt
     3841 cacatatggc cattcgtgcc tcagaacttg gaatgcctgc tgttatagga gttggagaag
     3901 aaaattttga aaaatattta aaagctaaaa aaataaatat agaatgtgaa agtgagcaaa
     3961 tattttgttt ataggtatta ctcaaaggct tatttgcaac gatagttatc atgaaaaaag
     4021 agaatgtttg gctttggatt ggggaaaatt atttaataaa gattta
//
LOCUS       DAPIWQ010000138         3976 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.140, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000138 DAPIWQ010000000
VERSION     DAPIWQ010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3976)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3976)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3976
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.140"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..91
                     /locus_tag="RJ267_001554"
     CDS             <1..91
                     /locus_tag="RJ267_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HDV7389390.1"
                     /translation="PNLTNLNIKIFKPHIIKNATVGVKLKKKY"
     gene            170..841
                     /gene="hsrA"
                     /locus_tag="RJ267_001555"
     CDS             170..841
                     /gene="hsrA"
                     /locus_tag="RJ267_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HDV7389391.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLANWTLPDGDGAELVNTIKHKSPRTSVMIMSSKTDKETEIKALKAGADDFVTKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKDQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            954..1199
                     /locus_tag="RJ267_001556"
     CDS             954..1199
                     /locus_tag="RJ267_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HDV7389392.1"
                     /translation="MSLLITKDCVCCDACREECPDEAIYENSPIYVIDPDLCSECVND
                     FSEPACIVACPYECIIPDPDNVETIEELKLKHRDREF"
     gene            1199..2659
                     /locus_tag="RJ267_001557"
     CDS             1199..2659
                     /locus_tag="RJ267_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HDV7389393.1"
                     /translation="MAKKTAVVDLGSNSIRMVIFEKTSRYGFYTTCEYKRKVRLGENA
                     YNNGKILQEEAMQRAEDALAFFKQCALKHKCKKIFIVGTSALRDAPNSKNFIKRIKDN
                     LSLNIRCIDGKSESYLGGLAALNLLSPFKDGTTLDIGGGSSELCLIKNNRIISCISLD
                     IGTVRLKELFYDTGKMDSLEEFIKPILEQIPKEFYNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNLHDFRYMLDEEKGHILKIFNSNLDSLINFGIKKDRFDTIKEGIFIFLKIAEKI
                     KAKQVITSGVGIREGVYLQDLLRPKITFPPNFNPSLKCLQDKFLQSKQKNKTPHFALQ
                     IFTTLKNLHKLNDNYKHTLLNAAKLCHIGEYLNFYFANEHSAHFVLGGLNYGFSHKEK
                     ALIASIIKLNGKKVNPYNLEPYKQLLPNIHTISWLNFILCLAKTLSTNEDKIDFAFAN
                     NTLYIYQENKILNLPKDELKKIAKPATIALAINQKI"
     gene            complement(2656..3453)
                     /locus_tag="RJ267_001558"
     CDS             complement(2656..3453)
                     /locus_tag="RJ267_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389394.1"
                     /translation="MRLLVLFFLILPLYSVELISFNIYDRNDRVDLMLSFDNAYNGKI
                     SQKKEKNLTLLTFSDLTYSKDELKELNSQLVDKISISSKNNNTYIMLQNKQNINLELS
                     SINDKFGVRIRAIEQGKANIESVPTTTVNNSQELMPKPKSTSLEGYDYTNYILVMLIL
                     VILLIVLWWFKKTMVYKNNNVSRDFTMIFQRFLDKNNQLVIFDHANKRYTMIIGNSNV
                     LLESVEIPEEQTIKHTEKTEKNFDSFFEENKKRIQNLIEQRQKGKKS"
     gene            complement(3454..3762)
                     /gene="fliN"
                     /locus_tag="RJ267_001559"
     CDS             complement(3454..3762)
                     /gene="fliN"
                     /locus_tag="RJ267_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HDV7389395.1"
                     /translation="MSDDIEFNIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(3762..>3976)
                     /locus_tag="RJ267_001560"
     CDS             complement(3762..>3976)
                     /locus_tag="RJ267_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389396.1"
                     /translation="KEDDWCDLTKECANQIIGYAKNLLNDAKGDDEYKLGIPEYLGKV
                     DFSEIVLDEALTYKFENCYFRIGYCK"
BASE COUNT         1457 a          602 c          531 g         1386 t
ORIGIN      
        1 tcctaattta accaatctta acataaaaat tttcaaaccc catataataa aaaatgctac
       61 agttggggtt aaattgaaaa aaaaatatta attttttttt aaagatatct aaacatttac
      121 ttaagctatg atataattct ttaaattttt cttaataagg atagaacaaa tgagaatttt
      181 agttatagaa gatgagatta gcctaaataa aacaattata gacaatctta atgaatttgg
      241 ttatcaaact gattcttctg aaaattttaa agatggagaa tactttatcg gcattagaca
      301 ttatgattta gttttagcaa actggacttt acctgatgga gatggagcgg aacttgttaa
      361 cactattaag cataaatctc caagaacttc agttatgatt atgtcttcaa aaacagacaa
      421 agaaacagaa atcaaagctt tgaaagctgg agctgatgat tttgttacaa aacctttaga
      481 ttttgatatt ctactcgcaa gaattgaagc aagactaaga cttggcggaa ccaatgttat
      541 taaaattgaa gacttagtta ttgatccaga tgaggaaaaa attacttata aagatcaaga
      601 tatagaactt aaaggaaaac cttttgaagt tttaacgcac ttagcaagac attcggatca
      661 aattgtatcc aaagaacaac ttttagatgc catctgggaa gaacctgagc tagtaactcc
      721 aaatgttatc gaagtagcta tcaatcaaat tcgtcaaaaa atggataaac cattaaatat
      781 atctaccata gaaacagttc gtcgtagagg ataccgtttc tgcttcccta aaaaatctta
      841 acaattttgc accttcggtg caaaaaattt atctttattt ctatttttat attttattta
      901 agtttggtta ttgtataaac taaaattatt ttttaaattt ttgaaaggtt atgatgtctc
      961 ttttaattac aaaagactgc gtatgttgtg atgcttgcag agaagaatgt cctgatgaag
     1021 ctatttatga aaatagtcca atttatgtaa tagaccctga tctttgttca gagtgcgtta
     1081 atgatttttc agagcctgcc tgtattgttg cttgcccata tgaatgtatc attcctgatc
     1141 ctgataatgt agaaactata gaagaattaa aactcaaaca tagagataga gaattttaat
     1201 ggcaaaaaaa acagccgttg ttgatcttgg ctcaaactcc attagaatgg tgatttttga
     1261 aaaaacttct agatatggtt tttatacaac ttgcgaatac aaacgcaaag taagacttgg
     1321 agaaaatgct tataataatg gcaaaattct ccaagaagaa gccatgcaaa gagccgaaga
     1381 tgccttagct tttttcaaac aatgcgcttt aaagcataag tgcaaaaaaa tatttatagt
     1441 aggcacatca gccttaagag atgccccaaa ttcaaaaaat ttcattaaaa gaatcaaaga
     1501 taatctgtct ttaaatatac gctgtataga tggaaaaagc gaaagttact taggtggtct
     1561 tgcggctcta aatttattaa gtccttttaa ggatggaacc actttagaca taggtggtgg
     1621 ttctagtgaa ttgtgtttaa taaaaaataa tagaattatt tcttgcatat ctcttgatat
     1681 tggcactgtt aggctaaaag aattgttcta tgatactgga aaaatggatt ctttagaaga
     1741 atttataaaa ccaattttag aacaaattcc taaagaattt tacaatcaaa accttattgc
     1801 aataggtgga agcttaagag caatatctaa ttccatcatg caaaaaaatt cctatccact
     1861 gaaaaattta catgattttc gctatatgct agatgaagaa aaaggacata ttttaaaaat
     1921 ttttaattca aacttagact ctttaatcaa ttttggcata aaaaaggatc gttttgatac
     1981 cattaaagag ggtatattta tttttttaaa gattgcggaa aaaataaaag ccaaacaagt
     2041 tatcacgagt ggggttggaa tcagagaagg agtttatttg caagatttac ttcgtcctaa
     2101 aatcacattt ccaccaaatt tcaatcccag tttaaaatgt ttgcaagata aatttttaca
     2161 atcaaaacaa aaaaataaaa ctccacattt tgctctgcaa atttttacaa cccttaaaaa
     2221 tcttcataaa cttaacgata actataagca tactttacta aatgctgcca aattatgcca
     2281 tattggagaa tatttaaatt tctattttgc taatgaacac tctgctcatt ttgtactagg
     2341 tggattaaat tatggatttt cgcataaaga aaaagcttta attgctagta ttattaagct
     2401 taatggaaaa aaagttaatc cttataatct tgaaccctat aaacaacttt tacccaatat
     2461 tcataccatt tcatggctta attttatttt gtgcttagct aaaactttaa gcacaaatga
     2521 agataagatt gattttgctt ttgcaaacaa tactctttat atatatcaag aaaacaaaat
     2581 tcttaattta cccaaagatg agctcaaaaa aattgcaaaa ccagctacca tagcattagc
     2641 aatcaatcaa aaaatttaag attttttacc tttttgacgc tgctctataa gattttgaat
     2701 tcttttttta ttctcttcaa aaaaagaatc aaaatttttc tctgtttttt ctgtatgttt
     2761 tattgtttgt tcctctggaa tttcaacact ttctaaaagt acattggaat tacctattat
     2821 cattgtataa cgtttattag cgtgatcaaa aataacaagt tgattatttt tatctaaaaa
     2881 tctttggaaa atcatagtaa aatctctaga aacattgtta tttttataaa ccatagtctt
     2941 tttaaaccac caaagcacta ttaacaaaat aactaaaatt agcattacta agatataatt
     3001 tgtataatca tacccttcta aacttgtact ttttggttta ggcattaatt cttgagaatt
     3061 attcacagta gttgtaggta cagattcgat atttgctttt ccttgctcta tagctcgtat
     3121 ccttactcca aatttatcat tgatagagct aagttctaaa ttaatatttt gtttgttttg
     3181 tagcataata taggtattat tatttttaga actaatacta attttatcta caagttgaga
     3241 gttaagttct tttaattcat ctttagaata cgttaaatca ctaaaagtta aaagagttaa
     3301 atttttttct tttttttgag aaatcttgcc attataggca ttatcaaaag aaagcattaa
     3361 atctactcga tcatttctat cgtagatatt aaaactaatc agctcaacac tatataaagg
     3421 taaaattaaa aaaaataata ctagcaatct catttaaatt tcttttttaa agtattgaag
     3481 cacagtctta gaatccaaaa tttcattaat tcttatagcg agattttttt cataaaccat
     3541 aacctcgcct ttgccaaaaa ttcttttatt gatataaagc tcaacgcttt ctccagcagg
     3601 cttttcaaga tcaataaccg aacctacttc aagttttaaa agctccgcta cactcatatt
     3661 tgtagttcca agctcgctta caaaatctac tgtaatatct aagatatctt cataagattg
     3721 taaaagccca tgatgaatgt taaactctat atcatcgctc attatttgca atatcctatt
     3781 ctaaaataac aattttcaaa tttataagtt aaagcttcat ctagaactat ttcagaaaaa
     3841 tcaacttttc ctaaatattc cggaattccg agtttatact cgtcatcacc cttggcatca
     3901 tttaacaaat ttttagcata acctataatc tgattggcac attctttagt taaatcgcac
     3961 cagtcatctt ctttaa
//
LOCUS       DAPIWQ010000139         3952 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.141, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000139 DAPIWQ010000000
VERSION     DAPIWQ010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3952)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3952)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3952
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.141"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..442
                     /locus_tag="RJ267_001561"
     CDS             <1..442
                     /locus_tag="RJ267_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HDV7389397.1"
                     /translation="LIKAVILSGGNDLSFYSPNVLSKKRDLYEKQVIEICLEEKIPLL
                     GICRGAQMIAHYFNSHISPCENHIGKHEVFFSKEKFISNSFHNFAIEKLGEDLVELCL
                     AKDNTIEAFKHKYENIFGIMWHIERENGLNNIQILKEWFSLIKE"
     gene            444..1205
                     /locus_tag="RJ267_001562"
     CDS             444..1205
                     /locus_tag="RJ267_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP:phosphoglutamine cytidylyltransferase"
                     /protein_id="HDV7389398.1"
                     /translation="MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSA
                     GINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFMLKCIEEKQ
                     DLIISYADIVYFQDCVQKLINAKEELAIVVDKSWCKLWSKRFANPLEDAETLKMTNGY
                     IIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSF
                     LQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIEK"
     gene            1195..1707
                     /locus_tag="RJ267_001563"
     CDS             1195..1707
                     /locus_tag="RJ267_001563"
                     /EC_number="2.7.1.224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine diphosphoramidate kinase"
                     /protein_id="HDV7389399.1"
                     /translation="MKNNPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDEL
                     REILGHYAYDRQGRIDMALKRAKFAKFLNDQGMMVIVTTISMFNEIYDYNRKQLKNYY
                     EIYIECDMHELIQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVINNSCRNNLEEK
                     VELIIKKLAL"
     gene            1704..3773
                     /locus_tag="RJ267_001564"
     CDS             1704..3773
                     /locus_tag="RJ267_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HDV7389400.1"
                     /translation="MKYYSISKKLIANVRNFYTISLYKKNLKIKKDDLFFGWGRKKSG
                     LKAMNLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATMPSKLENLL
                     NTCEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDNYFQKDEKRVLIITQTANDASL
                     EFGLAKDFKTLDMIKDAIKENPKSTIYIKIHPDVLSGKKQSDLDLNSLPKECILITEN
                     FNPIALLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKR
                     SLEEVFYAAYILYAEYFNPYLNQKSNIFDTIQTLAKYKDIEKVNSNKLFMLGFTLWKR
                     HFIKPFFKAKDNEIIFLNSLKSLARYKLKENDKFFIWGKRIDYNALKTTLIKKAQDEN
                     LLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFD
                     ENMLNRAKNIIKILLENRFSKYNGLKHEDLKINVKTGQKIILIPAQVEDDASMILGGF
                     GLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSA
                     IKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRTRKLSLEELV
                     AGALIAYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRF
                     YEFLAKK"
     gene            3770..>3952
                     /locus_tag="RJ267_001565"
     CDS             3770..>3952
                     /locus_tag="RJ267_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDV7389401.1"
                     /translation="MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKL
                     NFNGGDFFFYPSGTRCK"
BASE COUNT         1511 a          447 c          666 g         1328 t
ORIGIN      
        1 tctaataaaa gctgtgatat taagtggtgg caatgattta agtttttata gtcctaatgt
       61 tttatccaaa aagagagatt tatatgaaaa gcaagttata gaaatttgtt tagaagaaaa
      121 aataccactt ttaggaattt gcagaggggc tcagatgata gctcattatt ttaacagcca
      181 tataagtcct tgtgaaaatc atataggcaa acatgaagta tttttctcaa aagaaaaatt
      241 tataagcaat tcttttcata attttgctat tgaaaaatta ggcgaagatc ttgtagaact
      301 ttgcttagca aaagataata ccatagaagc ttttaaacat aagtatgaaa atatttttgg
      361 tataatgtgg catattgaaa gagaaaatgg acttaataat attcaaattt taaaagagtg
      421 gtttagttta atcaaggaat aatatgaatg caattatctt agcagcaggt tttggatcaa
      481 ggctgatgcc tttaacaaaa gatcaaccaa agtgtatggt tgagtataag aataaaaaaa
      541 taatagatta tgaaatcgaa gctttaaaat cagcaggtat aaatgaaata gctgttgtgg
      601 gtggatattt aaacgatgtg ctaaaaaatt atcttaataa atatgatatt gagcattttt
      661 ttattaattc aaaatatgat aaaaccaata tggttcatac ttttttttgc gctaaagatt
      721 ttatgttaaa atgcatcgaa gaaaaacaag atttgattat ttcttatgcg gatattgttt
      781 attttcaaga ttgcgtgcaa aagcttataa atgccaaaga agaacttgct atagtagttg
      841 ataagtcttg gtgtaagctt tggagcaaac gctttgcaaa tcctttagaa gatgctgaaa
      901 cattaaagat gacaaatggt tatattatag aacttggaaa aaaagctaat gcctatgatg
      961 agatagaagc tcaatatata ggacttttta aattttctta tcaatttctt tccgaagtta
     1021 ttgcttttta tgaaatgctt gatcgagata ttttatatga taataaaaat tttgaaaata
     1081 tgtacatgac aagttttttg caagctttaa ttgaaaaata caacaacgca aaagcagtgg
     1141 aaattgatgg caattggtgt gaaattgatt ttatgagtga tttagaggtg caaattgaaa
     1201 aataatcctt atattatttg gcttactggt ttagctggaa gtggaaaaac aactataggt
     1261 caagctttgt atgaaaaatt aaaattaaaa tataaaaacc ttatttatct cgatggagat
     1321 gagttaagag aaatattagg acattatgca tacgatagac aaggtcgcat agatatggct
     1381 ttgaaaagag ctaaatttgc aaaattttta aacgatcaag gtatgatggt tattgtcact
     1441 acgatttcaa tgtttaatga gatttatgat tacaatagaa agcaattaaa aaattattat
     1501 gaaatttata tagaatgcga tatgcatgaa ttaatacaaa gagatcaaaa agggctttat
     1561 actaaggctt taaataaaga aattgataat gtagttggtg ttgatataga atttgataaa
     1621 ccagaggctg atttagtgat caataattct tgtcgaaata atttagaaga aaaagttgaa
     1681 cttataataa agaaattggc attgtgaagt attactcaat atcaaaaaaa cttattgcta
     1741 atgttagaaa tttttacacc atttctttgt ataagaaaaa tttaaaaatc aaaaaagatg
     1801 atcttttctt tggttgggga cgcaaaaaat caggtttaaa agctatgaat ttagctaaaa
     1861 aatataaggc taaattcata cttttagaag atggatttat ccgctcatta aacttagggg
     1921 ttgaaaatag cccaagtttt tctatggtta aagatgatat aggcatttat tatgatgcaa
     1981 caatgccttc aaagcttgaa aatcttttaa atacttgtga atttaaagat gaagaaatca
     2041 agcaagctaa aaaagctata gagcttatca aaaaatataa aattagcaag tataataaca
     2101 atctcgatat tccagataat tattttcaaa aagatgaaaa acgcgtttta atcatcactc
     2161 aaacggccaa tgatgcctct cttgaatttg ggcttgctaa agattttaaa actcttgata
     2221 tgataaaaga tgccataaaa gaaaatccta aatctacaat ttatataaaa atccatccag
     2281 atgttttaag tggtaaaaaa caaagtgatt tagatttaaa ttccttacct aaagaatgta
     2341 ttttaatcac tgaaaatttt aatcccatag ccttgcttga gttttttgat aaggtttata
     2401 ccaaaacttc tggtatgggt tttgaagctt tgatgcaaga atgtgagtgt atttgttatg
     2461 gcatgccttt ttatgcgggc tggggtctaa caaaagataa attagagtgt aaaagaagga
     2521 tgcaaaaaag aagtttagaa gaagttttct atgctgctta tatactttat gctgagtatt
     2581 ttaatcctta tttaaatcaa aaaagtaata tttttgatac tattcaaact ttagcaaaat
     2641 ataaagatat agaaaaggta aattctaaca agctttttat gctaggcttt accctatgga
     2701 aaaggcattt tatcaagcct ttttttaagg ctaaagataa tgaaattatt tttttaaatt
     2761 ctttaaaatc tttagctaga tataaactta aagaaaatga taaatttttc atttggggta
     2821 aaaggataga ttataacgct cttaaaacta ctcttataaa aaaagcgcaa gatgagaatt
     2881 tgctccattt tactcccaaa atttctttag ttgaagatgg atttattcgc tcaatctctt
     2941 taggttctga tcttacgcgc cctttttctt taattgttga tgataaagga ctttacatag
     3001 atccaaataa agcaagtaaa ttagaagagc ttttgcaaaa cgaaattttt gatgaaaata
     3061 tgctaaatag ggcaaaaaat attataaaaa tcttacttga gaaccgcttt tcaaaatata
     3121 atggcttaaa gcatgaagac ttaaaaatca atgtcaaaac agggcaaaaa attattttaa
     3181 tccctgctca agttgaagat gatgcttcga tgattttagg gggttttggc ttatctactc
     3241 ttgatttgct taaggaggtg cgttctaaaa atcaagatgc ttatatcatc tttaagcctc
     3301 atcctgatgt gttaagtggc aaccgtgtag gtttaaaaga tgaaacactc atcttggaat
     3361 tttgtgatga gattgtaaaa gattgcagta tcgatagtgc tataaaaatt gctgatgaaa
     3421 ttcacactat tacttctaca agtggttttg atgctctttt aagagctaaa aaagttttta
     3481 cttatggtat gcctttttat gcgggctggg gtttaacaaa agataaatat agatgcgaaa
     3541 gaagaacaag aaaactaagc ctagaagagc ttgtagcagg tgctttgata gcatatccaa
     3601 gatatataaa tcctaaaaca aaaactttat gtgaaattga agtttgttta gatataatgc
     3661 taaatttaca aaaagcttat ttttcaaaaa aatatataaa attggcaata gattttaaaa
     3721 cttttatgct tagaaaaata agaagatttt atgaattttt agcaaagaaa tgagatttag
     3781 cactaaaatt aaaaaagaat ttagcggtaa aaatgtttta ctcttgcaag ggcctgtggg
     3841 aaattttttt catcatcttg caataaaaat gaaaaaaaaa caaaccaaag tttttaaact
     3901 caattttaac ggtggagatt tttttttcta tcctagtgga acgaggtgta ag
//
LOCUS       DAPIWQ010000140         3877 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.142, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000140 DAPIWQ010000000
VERSION     DAPIWQ010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3877)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3877)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3877
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.142"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            20..199
                     /locus_tag="RJ267_001566"
     CDS             20..199
                     /locus_tag="RJ267_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389402.1"
                     /translation="MLEFPKNKVVFMEILDFILIVIFVFLMIVLVIGFNHQMMQKNKE
                     REERFKKYKKGEQNE"
     gene            192..761
                     /locus_tag="RJ267_001567"
     CDS             192..761
                     /locus_tag="RJ267_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HDV7389403.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRAKELNPDLEVVIASLNS
                     ELLVKGANSISIKADCSIEDVDIENLDAIALAGGFEGMMNLKNSNVILNIIKQLHSKN
                     KIVAAICASPIVLNEAGVLEGEFACYPSCEVGLNGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKKLCGDEIYQKLYEGMLLPLTK"
     gene            complement(791..1156)
                     /locus_tag="RJ267_001568"
     CDS             complement(791..1156)
                     /locus_tag="RJ267_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HDV7389404.1"
                     /translation="MQEKTIFELIVEGKLPCNKVLESDDFLAFHDIAPKAPIHILIIP
                     KKYFKDFQEFDPELMAKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFELPKEKTKKENPQALF"
     gene            1279..2271
                     /gene="pheS"
                     /locus_tag="RJ267_001569"
     CDS             1279..2271
                     /gene="pheS"
                     /locus_tag="RJ267_001569"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HDV7389405.1"
                     /translation="MQNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDE
                     AKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPV
                     MSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQKVSFANL
                     KSVLEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLG
                     CGIVDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            2268..>3877
                     /gene="pheT"
                     /locus_tag="RJ267_001570"
     CDS             2268..>3877
                     /gene="pheT"
                     /locus_tag="RJ267_001570"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HDV7389406.1"
                     /translation="MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDK
                     VVVGYVKEKIKHENSDKLSICQVDIGSETLQIVCGAANVDAGQFVAVATKGAIMSNGM
                     EIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELI
                     EVELTPNRGDCLSIYGIARDLAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNG
                     LYNYRAIGLKEEIQTNLLLSLRLAQIEGLGKNSIENLLNYATHSTGVLFNAYDLSSFS
                     EKDEEFTINLSKQVHGETKVSYKDKLLSFSGIFQNNESRCKDDSKIIIIEANYTDPLV
                     IADAKIYHKDQDEKMLYRSFRGSEPKLNLGMDFLLGIFEQIPNLVIYSSSQQILTDKE
                     LPIIPISIEGISDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLS
                     DICEEVVRIIGIDNIASKGLEFIEKNRLNSAYKNYIEFLNLRKRAVASGYFESLHYVL
                     DNGEELKRLGFDSVKLKLINPITAELNT"
BASE COUNT         1375 a          430 c          736 g         1336 t
ORIGIN      
        1 tctaaagatt taaaaaaatg tgttagaatt tcccaaaaat aaggttgtat ttatggaaat
       61 tttagatttc attctaatag ttatttttgt gtttttaatg attgttttgg ttataggttt
      121 caatcatcaa atgatgcaaa aaaacaaaga aagagaagaa agatttaaaa aatataaaaa
      181 aggagaacaa aatgagtaaa aaagtattaa ttccattggc tcaaggtttt gaagaagctg
      241 aatttatagg aattgcggat gttttaaaac gagcaaaaga attaaatcca gatttggaag
      301 ttgttatagc ttcgttaaac agtgagttat tggtaaaagg tgctaatagc attagtataa
      361 aagcagattg ttctatagag gatgttgata tagaaaattt agatgctatt gctttggcgg
      421 gtggctttga aggtatgatg aatcttaaga attcaaatgt tattttaaat atcattaaac
      481 aacttcatag caaaaataaa attgttgccg caatctgtgc ttctcctata gttttaaatg
      541 aagcaggtgt tttagagggc gagtttgctt gttatcctag ttgtgaagtt ggacttaatg
      601 gaaatcgtgt taacaaggct gtagttgtaa ataaaaatgt tataacttca gcaggtccag
      661 ctacggcaat tctttttggt ttagaactag ctaaaaagtt atgcggtgat gaaatttatc
      721 aaaaattata cgagggaatg ttgctacctt tgacaaaata gtttaaatgg tagtttttct
      781 accatttaaa ttaaaataaa gcttgaggat tttctttttt agttttttcc ttaggcagtt
      841 caaaacctcc aagcatatga aaatgcaaat gaaaaacttc ttgtccacta ttttttccac
      901 agtttgttac caagcgatat ccacttttat ctacacctaa aagaacagct aattcttgta
      961 tgaaacttgt cattttggcc ataagttcag gatcaaattc ttgaaagtct ttaaaatatt
     1021 ttttagggat tataagtata tgtatgggtg ctttgggtgc aatatcatga aatgctagaa
     1081 aatcgtcact ttcaagcact ttattgcatg gaagtttacc ttcaactatg agttcaaaaa
     1141 ttgttttttc ttgcattatt tatccttttt tattgttggt ttgatacaat tatatcttta
     1201 aagtttggtt tttatgctga atttaaaata gtttttaata gaattagaac ttgaaatatt
     1261 ttatttaagg taagaaaatt gcaaaatttt atagaacaga ttcaaaaatg tgagaattta
     1321 aatgatttgg aagccattag gatttccgtt cttggaaaaa aaggtatttt aacagaaggc
     1381 tttacaaagc ttaaagagtt agaagatgag gcgaaaaaag aatttgctgc taaattaaat
     1441 gcacaaaaag aaatatttaa tgaggcttat ttagccaaat ttaaagattt ggaaaatctt
     1501 gctttagaag aaagaatgaa acaagatgct ttaaatttta actattttga tgaaagtatt
     1561 acaacaggtg ccttgcatcc tgttatgagc accatggata aaatcataga atattttata
     1621 gctttgaatt ttagcataga aaaagggcct ttaatagaag atgactttca taattttgaa
     1681 gcgttaaatt tacctaaatc tcaccccgca agagatatgc aagatacctt ttattttgat
     1741 gataaaaggc ttttaagaac acaaacttcg ccagtgcaaa tacggacaat gcttgcacaa
     1801 aaacctccta ttaggatgat agcccctggt gctgtattta gaagagattt tgatattacg
     1861 catactccta tgtttcatca agttgaaggc cttgtggtgg aagaagggca aaaggttagc
     1921 tttgcaaatt taaaaagtgt attggaagat tttttgcgtt atatgtttgg agatgtgaaa
     1981 gttcgttttc gtccaagttt tttcccattt acagaacctt ctgctgaagt tgatatttct
     2041 tgtgtatttt gcaaaggaaa gggttgtaga gtttgcaaac atacaggttg gcttgaagtt
     2101 ttaggatgtg gaatagttga tcctaatgtt tataattttg ttggttatga aaatgtaagt
     2161 ggttatgctt ttggattggg agtagaacgt tttgcaatgc ttttgcatca aattccagat
     2221 ttaagatctt tatttgaagg tgatttgaga ttattggagc agtttagatg ataattacta
     2281 aaagttggtt gaatgattgg ttagaacttg aagaaataag ttcagataaa atagctaaaa
     2341 ctttaaactc tataggtata gaagttgata gggttggcgc tttaaaggct ccagataaag
     2401 ttgttgtagg ctatgttaag gaaaaaatta aacatgaaaa ttcagataaa ttaagcattt
     2461 gtcaagttga tatcggaagt gaaaccttgc aaattgtctg cggtgctgcg aatgttgatg
     2521 caggacaatt tgtagctgtt gcaactaaag gtgctatcat gtcaaacggt atggaaataa
     2581 aagaagcaaa attgcgagga gtggattctt gtggtatgct ttgttctagt ttagaactgg
     2641 gttttgaaaa aatcaatgaa ggaattatgc ttttagatga gagtataggg aaattagaac
     2701 ttgggagacc tttaaatact tatgaaattt ttaatgatga gctaatagaa gtggaactta
     2761 ctcctaatag gggtgattgt ttaagtattt atggtatagc tcgtgattta gccgcagctt
     2821 taaatttaaa tttaaaagaa ccaaaaccat ttaaagaaag tgaaaatgtt ttaggtatcg
     2881 gtagaatttt gcgcttagca gctgagaaag aacttaatgg actttataat tatcgagcca
     2941 tagggctaaa agaagaaatt caaacaaatt tattgcttag tttaagactt gctcaaattg
     3001 aaggtttggg aaaaaattcc atagaaaatt tattaaatta tgcaacgcat tcaactggtg
     3061 ttctttttaa tgcttatgat ttaagtagtt tttctgaaaa agatgaagaa tttaccatta
     3121 atttaagcaa gcaagtgcat ggagaaacaa aagtatctta caaagataaa cttttaagct
     3181 ttagcggaat tttccaaaat aatgaaagta gatgtaaaga tgattctaaa ataattatta
     3241 ttgaggctaa ttataccgat ccattggtaa ttgcagatgc taaaatatat cataaagatc
     3301 aagatgaaaa aatgctttat agaagtttta ggggaagtga acctaaatta aatttaggaa
     3361 tggatttttt gcttggtatt tttgagcaga ttccaaatct tgttatttat agttcttctc
     3421 aacaaatttt aactgacaaa gaattaccaa tcataccaat aagtattgaa ggtattagcg
     3481 atataatagg acaaaatgtt gataaagatg aagtattaaa aatattaaag aaattaggtt
     3541 ttgagctcat actttcaggt gaagggctta taaatgttaa agcaccttta catcgtcctg
     3601 atattaaaaa tttatcagat atttgcgagg aagttgtaag aattataggt attgataata
     3661 ttgcttccaa gggtttagaa tttatagaaa aaaatcgttt aaattctgca tataaaaatt
     3721 atattgagtt tttaaattta agaaaaagag cagtagctag tggttatttt gaaagcttac
     3781 attatgtttt ggataatgga gaagaactta aaagattagg ttttgactct gttaaattaa
     3841 aactaatcaa tccaattaca gcagaactta atacttt
//
LOCUS       DAPIWQ010000141         3832 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.143, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000141 DAPIWQ010000000
VERSION     DAPIWQ010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3832)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3832)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3832
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.143"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            33..728
                     /locus_tag="RJ267_001571"
     CDS             33..728
                     /locus_tag="RJ267_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HDV7389407.1"
                     /translation="MKTIGIIGGMSFESTITYYKTINQAINDKLKSLNSAKILLYSVN
                     FEEIENLQSQDKWQEAAQILTQCAKKLELAGANFIIIATNTMHKVFDEIQQNINIPIL
                     HIAKSSAKALKQENIQKIGLLGTKYTMTQDFYKKMLIEENISVITPSDEDIKIVNDII
                     FNELCKGEIKQDSKEKYLNIIKKLQEKGAKGVLLACTEIGLLISKNDTNIKIFDTSLI
                     HALDAANEALKDL"
     gene            complement(922..2046)
                     /gene="cydB"
                     /locus_tag="RJ267_001572"
     CDS             complement(922..2046)
                     /gene="cydB"
                     /locus_tag="RJ267_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HDV7389408.1"
                     /translation="MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
                     NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFMNNINDENIKIRAMKKLMINSILFL
                     PFFLGFLAWIFLKDGFSVDTNGVVSMSANLYLYNFLNQMIFAVLLVIGVILVLLGMVQ
                     GTKGCSKAIFTLGLGTVLTVFALLSSIGLGQSAFYPSLSDLQSSLTLKNASSSYYTLS
                     VMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY"
     gene            complement(2046..3608)
                     /locus_tag="RJ267_001573"
     CDS             complement(2046..3608)
                     /locus_tag="RJ267_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HDV7389409.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVK
                     TKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKGFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
                     FNPDTARNEMQSFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFMLKGRHIIEA
                     KKSLVVGASFGLVCSIFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRID
                     RGKIAIQTLKDYKLAKENNDTIAMANHKSILETHFKDFGYGYLEKPSDTIPPVALTFY
                     SFHIMVALGSFFFLLFIVTLYLTMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLLPVHIAATQLGKVNVQISFWIFAVLFTALLIAEVKIMLTQIKKGFDAH
                     AGHTPLMGKGEK"
     gene            complement(3609..3815)
                     /locus_tag="RJ267_001574"
     CDS             complement(3609..3815)
                     /locus_tag="RJ267_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004275344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HDV7389410.1"
                     /translation="MSQIFNFYKEGFKNLTLGKTLWKIIFIKLFVMFVILKLFVFDVN
                     FNSIFKSDKEKSTFVLKNLTLEGK"
BASE COUNT         1484 a          659 c          527 g         1162 t
ORIGIN      
        1 aacgactcaa aaattaattc ttaaggagaa aaatgaaaac cattggtatt ataggcggaa
       61 tgagttttga aagcactatt acttattata aaacaataaa tcaagctata aatgataaat
      121 taaaatcttt aaattctgca aaaattttac tttacagtgt taattttgaa gaaatagaaa
      181 atttacaaag ccaagataaa tggcaagaag ctgcacaaat tttgactcaa tgtgctaaaa
      241 aattagaact tgcaggggct aattttataa taattgcaac taatactatg cataaggttt
      301 ttgatgaaat tcaacaaaat ataaatatcc ctattttaca tattgcaaaa agttctgcta
      361 aggctttaaa acaagaaaac atacaaaaaa ttggtttatt gggtactaaa tacacaatga
      421 cgcaggattt ttataaaaaa atgctgattg aagaaaatat tagcgttatt actcctagtg
      481 atgaagatat aaaaatcgtt aatgatatta tttttaatga gctttgcaaa ggtgaaatca
      541 agcaagattc taaagaaaaa tatttaaata ttataaaaaa actacaagaa aaaggggcaa
      601 aaggagtgct tttagcttgc actgaaattg gtttattaat atccaaaaat gatacaaata
      661 tcaaaatttt tgacacaagc cttattcacg cccttgatgc tgctaatgaa gctttaaaag
      721 atttatgatt aaaagatacc caaaaatggg caaattgcaa tattttgaaa agatttatac
      781 ttatatcggt ttaaatctta tcttgcttta tagtttgcta tctttttcta attgattgat
      841 atttagcatt ataaatttat agctcagata aattactaaa ggccaagcca ataaaaacaa
      901 agcatgtaac attttttctc cttaatatgc gtgatcatcg tttgcgattt cttcgcgtgt
      961 gatttttact ttatccattg cattccaaac atagataata taagctaaaa caaaaggtac
     1021 aagtaaagat acataagcca tgacgcttag agtataatag cttgaacttg cattttttaa
     1081 agttaaagaa ctttgtaaat cacttaaaga tgggtaaaaa gcactttgac ctaaaccaat
     1141 gcttgataat aaagcaaaaa ctgttaaaac cgttccaagt cctagggtaa aaatagcttt
     1201 agagcaacct tttgttcctt gaaccatacc taaaagcact aaaatcacac caataacaag
     1261 caaaacagca aaaatcattt gatttaagaa attatataaa tataaattcg cactcatgct
     1321 tacaactcca tttgtatcta cactaaaacc atcttttaag aaaatccacg ctaaaaaacc
     1381 taagaaaaaa ggtaaaaata aaatactatt gatcatgagt tttttcatag ctcttatttt
     1441 gatattctca tcattgatat tgttcataaa atacgctgcg cctaaaagcc ttgctaaaaa
     1501 tactaaagct aagcctaaga gataattaaa aggattaagt aaaagttcta agccgtgcaa
     1561 aggattttgc caagaaacaa aattatgctc atttaagata aattcagaac cgctaaaaaa
     1621 actacttact gcaactccga ttaaaaacac acctaaataa ccattaattt taagaaaaat
     1681 ttcataggtt ttagagccat aaacattatt ttcttttttg cgatattcat aagccacagc
     1741 ctgtaaaata aaacaaaata aaatacaaag ccaagcccaa taagctccgc caaaacttgt
     1801 actataaaaa agtggaaaag ctgcaaaagc tgctccgcca aaaagtacga gagttgtaaa
     1861 accaagctcc catttacgcc ctaaagaatt aactagcata gttttttcaa gctcatcctt
     1921 gctaagctca tcgattaaag tctgtccacc ttgaacaaaa aacataaaaa ctaaaagtcc
     1981 accaagtaaa cttaaaatca accaccaata aatttgcaaa ccttcaagtt ctaaaccaaa
     2041 aaacattatt tttctccttt gcccataagt ggagtatgtc ctgcatgtgc gtcaaaacct
     2101 tttttaatct gagtaagcat gattttaact tctgcaatca ataatgctgt aaaaagtact
     2161 gcaaaaatcc aaaatgaaat ttgaacattg acttttccaa gttgtgttgc tgcgatatgt
     2221 acaggaagca agtcttgaat tgcccaaggt tgtctgccta cttcagcaac aatccaacct
     2281 gcttcagcgg caatataacc caatggaatg gataacaaac acacccaaag tacttttcta
     2341 aatttctcaa tatcatttgc catggtaaga taaagcgtaa cgatgaaaag taaaaagaaa
     2401 aaacttccta aagcaaccat gatatgaaag ctataaaaag ttaaagccac aggtggaata
     2461 gtatcgcttg gtttttctaa atatccataa ccaaaatctt taaaatgagt ttctaaaatg
     2521 gatttgtgat ttgccatagc tattgtatca ttgttttctt tagcaagttt atagtctttt
     2581 agagtttgta tagcgatttt tcctctatcg atacgatttt gcataggttc tatacctttg
     2641 ctttcatttc catagatcaa atcttcaatt cctggaacaa aagaatttgg atcacggttt
     2701 cctaatatag aaagagcgta aggtatagta atgtcaaata aaaacacact ttcgttatta
     2761 tctatggttt ttttaggatt taaaattcca aaaggtacaa gtcctgcacg atgttcacct
     2821 tgataaaccc cttccatagc tgcaagtttc ataggttgag tttgagttac acggtaagcg
     2881 ctttcatctc cgctgaaaaa caaaaagatt gaacaaacca aaccaaaact agctcctaca
     2941 actaagcttt ttttagcctc gataatatgg cgtcctttta acataaacca agctgaaatt
     3001 cccattacaa ataaagctga aattacataa ccactgccta tggtatgtaa aaattttgaa
     3061 atagctacag gagaaagtgc tacttcaaaa aagctttgca tttcatttct tgctgtgtca
     3121 gggttaaagc tcattcctac aggatattgc atccaaccat ttgccactaa aatccaaaaa
     3181 gcagaaagat tacttcctat agccacacac caagttgaaa gtaagtgaaa acccttgctt
     3241 actttatccc agccaaaaaa cataactgca aaaaaagtag cctctaaaaa aaatgccata
     3301 ataccttcaa ccgccaaagg tgcaccaaaa atatcaccca caaaccagct ataatttgcc
     3361 cagtttgttc caaattcaaa ttccattata atgcctgtag ctacaccgat agcaaaattt
     3421 atagcaaata atgaaagcca aaatttggtg atttttttcc atctttcatt tttagttttt
     3481 acatagatgg tttccatgat agcgatcata aaagacaagc ctaaggttaa aggcacaaac
     3541 aaaaaatgat aaagtgcagt taaagcaaac tgcgctcttg accaatcaac gctactaagt
     3601 tcgttcattt attttccttc gagtgtaaga tttttgagta caaaagtgct tttttctttg
     3661 tcgcttttaa aaatagaatt aaaatttaca tcaaaaacaa aaagttttaa aatcacaaac
     3721 ataacaaaaa gtttgataaa aataattttc caaagggtct ttccaagagt taaattttta
     3781 aaaccttctt tgtaaaaatt aaaaatttga gagatgctaa aatataagtg tt
//
LOCUS       DAPIWQ010000142         3806 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.144, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000142 DAPIWQ010000000
VERSION     DAPIWQ010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3806)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3806)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3806
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.144"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..866
                     /locus_tag="RJ267_001575"
     CDS             <1..866
                     /locus_tag="RJ267_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDV7389411.1"
                     /translation="EIFLDLLNTQSPTHTANNFSITQPNVSIVIKNLENKFDGILFER
                     LGKKLLPTPKALELGKNWLKIIQAYYQSLEKLNDESMLLGEIKIASTQSISEHFLAPI
                     LFDFKAEFKNIEIRSQTQNSKECLNLLKNGNIEFAIIEAELDPALVEYENLEINFWQD
                     DELIVATSDKKLNEKEFYIDELLEQKWILREVGSGLRDKFLNEIGASSKKLNIFLELD
                     RMAAIKELVLQKKAISIFSKKSIEKELKNSTLYEIKLKNIDLKRKFYTLKRKNYNFNR
                     ALEKFEKIFKS"
     gene            946..2814
                     /gene="rpoD"
                     /locus_tag="RJ267_001576"
     CDS             946..2814
                     /gene="rpoD"
                     /locus_tag="RJ267_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HDV7389412.1"
                     /translation="MNAKTQEAELEELFQENAKDYITYEKLVKYLTKQPSASTTKKVQ
                     ALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLI
                     NRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKEDERTLK
                     VIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEI
                     VKSMETALKSDEEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET
                     TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRL
                     VVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA
                     DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITK
                     EPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR
                     MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
     gene            complement(2830..3342)
                     /locus_tag="RJ267_001577"
     CDS             complement(2830..3342)
                     /locus_tag="RJ267_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HDV7389413.1"
                     /translation="MKKIYIIRHAKASKSEDIDDFERKLTKSGKEDLKKLFKNLASHE
                     IHPDLVLSSPAVRTAKTAKKIAKFYNFDKNRICFDERLYLCNVENLLKILQDIDDEFN
                     EVFLVGHNPSLMELGELLSSLCLASFPTSSILCLEFDIKEFKNLKKHSGKLVFFEHVR
                     KLKEEKDLGF"
     gene            complement(3339..>3806)
                     /locus_tag="RJ267_001578"
     CDS             complement(3339..>3806)
                     /locus_tag="RJ267_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HDV7389414.1"
                     /translation="SYDYYNILGLNILFFNGAYWQLLSSMFLHGNLTHLILNMIVLFQ
                     FGRMLETYLGALCFIFIYFIGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLMG
                     FYAVIDKNSTKGLIVAILLMSFVPLLMGVNVAWYGHIFGFMCGYILAKIKEVK"
BASE COUNT         1634 a          554 c          545 g         1073 t
ORIGIN      
        1 tagaaatatt tttagatctt ttaaacactc aaagtccaac tcatacagcc aacaattttt
       61 ccataactca acctaatgtt tcaatagtaa ttaaaaattt agaaaataaa tttgatggca
      121 ttttatttga aagacttgga aaaaaactct tacctacacc aaaagcttta gaactaggaa
      181 aaaattggtt aaaaattata caagcctact accaaagctt agaaaaatta aacgacgaaa
      241 gtatgctctt aggggaaata aaaatagcct caactcaaag catttctgaa cattttttag
      301 ctcctatttt atttgatttt aaggcagaat ttaaaaacat agaaattcgc tctcaaacgc
      361 agaattcaaa agaatgttta aatttactaa aaaacggaaa tatagaattt gcaatcattg
      421 aagcagaact tgatccagct ttagtggagt atgaaaattt agaaataaat ttttggcaag
      481 atgatgaact tatagtagct acaagtgata aaaaactcaa tgaaaaagaa ttttatatcg
      541 atgaactttt ggaacaaaag tggattttaa gagaagtagg ctcaggctta agggataaat
      601 ttttaaacga aattggtgca agctcaaaaa aacttaatat ttttcttgaa cttgatagaa
      661 tggctgcgat taaagaactt gttttacaaa aaaaagcaat ctctattttt tccaaaaaaa
      721 gcatagaaaa agaattaaaa aattcaacac tttatgaaat taaattaaaa aatatcgacc
      781 taaagcgtaa attttatacc ttaaaaagaa aaaattataa ttttaacaga gctttagaaa
      841 aatttgaaaa aatattcaaa tcataaacat aataaccgat ttatatagaa agttaagcaa
      901 tttttagata aaatccaaag cttatataaa tttcaaggat aatcaatgaa cgccaaaact
      961 caagaagctg aattagaaga attatttcaa gaaaatgcaa aagattatat cacatatgaa
     1021 aaattggtaa aatatcttac aaaacaacca agtgcatcaa ccactaaaaa agtgcaagca
     1081 ttaatgaaaa aacacaaagt gcaacttttt tcagcagctg aaattgcaca aatgaaaaac
     1141 atagaagatg caaaaagact tcaagaagaa aaacaaaaac tccaagatac aagccttgag
     1201 aacgaatttg atttagccaa tgaaaacgat ttattagaat ggagcagatc agactctcct
     1261 gttcgtatgt atttaagaga aatgggacaa attgctttat taaacaaaga tgaagaaatt
     1321 gaaatttcca aaaaaataga acttggcgaa gatattatca ttgatgcttt ttgttctgta
     1381 ccttatttga tagattttat tttagattat aaagaacctt taataaacag agaaagaagg
     1441 gtaaaagaac tatttaaaag ctttgacgat gaagaaaaaa gtgatgacaa acttgatgaa
     1501 cttgatatag atgaagatga agaaaacgaa acagaattag aatcagatga agaaaatact
     1561 aaaaaaaaca gcaaaaaaga agatgaaaga actttaaaag ttatagaaaa atttaaagct
     1621 ctagaaaaag ctaaaaaaga ttggctaaaa acatccaaag acaaagaaag cggagatgaa
     1681 cttttagata aattaagcat tgcgttcaaa aaaaatattt taaaagaaaa attaatggat
     1741 ctaggcccta cttcaaaact tattagcgaa atcgtaaaat caatggaaac tgcactaaaa
     1801 agtgatgaag aatttgacaa agaacttaag cgtttagaat accgcttacc tatgttttct
     1861 gatgaactta aaaaacgcca tgcagatatt ttaaaagata ttacaaaatt gagcaaagaa
     1921 gaaatcacag agcgagcttt agaaacaacc atggtaagca cttatatgga aattaaaaaa
     1981 ctatttcaaa ctaaagaagc cagtgaaaaa agctttgatc ttgaaaaatc acgcttaaaa
     2041 gaaattttgg agcaaattaa acgcggtaaa aaaatctctg atgaagcaaa aggaagaatg
     2101 gcaaaatcaa acttgcgcct tgttgtaagc atagctaaac gctacacaaa tcgtggtctg
     2161 cctttcttag accttatcca agaaggaaat ataggtttga tgaaagctgt ggataaattt
     2221 gaatacaaaa ggggttataa attttccact tatgcaactt ggtggatcag gcaagctatt
     2281 tcaagggcta tagctgatca agcaagaacc ataagaattc caatccatat gatagaaacc
     2341 atcaatcaaa ttaacaaaat tatccgcgaa catctacaaa aagatggaaa agaacctgat
     2401 gtcagtgtta tagctaaaga agtaggttta agcgtagata aggttaaaca agttattaaa
     2461 atcacaaaag aaccaatttc tcttgaagct ccaataggaa atgaagatga tggtaaattt
     2521 ggagattttg ttgaagatag aaattcactt tctccaatgg atcatatctt aaaggatgat
     2581 ttaaaagaac aaattgatga agttttagat caattaaacg atagagaaaa agcggtaatt
     2641 cgtatgcgtt ttggtttaat ggatgatgaa agtgatagaa ctttagagga aattggaaag
     2701 gaacttaatg tcactcgaga aagagtgaga caaatagaaa gctcagctat aaaaaaactc
     2761 aaacacccta aagtaggaag aaaactaaaa aattatatag aaggttggaa gtaagagtca
     2821 atctccttac taaaaaccca gatctttttc ttcttttaac ttgcgtacat gttcaaaaaa
     2881 aactaatttt ccgctatgtt tttttaaatt tttaaattcc ttaatatcaa attctaaaca
     2941 caagatagaa gaagttggaa aagaagctaa acatagcgaa cttaataact ctccaagctc
     3001 cattaaacta ggattatgac ccactaaaaa tacttcatta aactcatcat caatatcttg
     3061 cagaattttt agcaaatttt caacattgca aagatacaat ctttcatcaa aacaaattct
     3121 atttttatca aaattataaa atttggctat ttttttcgct gttttagcgg ttctaacagc
     3181 aggacttgat agcaccaaat caggatgaat ttcatgcgaa gcaagatttt taaaaagttt
     3241 ttttaaatct tcctttccac tcttagtaag ttttctttca aaatcatcga tgtcttcact
     3301 cttacttgct tttgcatgtc ttataatata aatttttttc attttacctc ttttatttta
     3361 gctaaaatat aaccacacat aaacccgaaa atatgaccat accaagcaac atttaccccc
     3421 ataagcaatg gcacaaaact cataagtaaa attgccacta taagtccttt tgtgctattt
     3481 ttatcaataa cagcataaaa gcccattaaa acacaaattg caccactagc gcctatgaca
     3541 tttatatttt ctccaaaata tttaaaatca aaatacacat aaaaaacact taaaagtgag
     3601 cacaacaatc cgccaataaa ataaataaaa ataaaacaca aagcacccaa ataagtttct
     3661 aacatacgcc caaattgaaa caaaactatc atatttaata taagatgagt taaatttcca
     3721 tgtaaaaaca ttgaacttaa aagctgccaa taagctccat taaaaaataa aatattcaaa
     3781 ccaaggatat tgtaataatc ataaga
//
LOCUS       DAPIWQ010000143         3775 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.145, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000143 DAPIWQ010000000
VERSION     DAPIWQ010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3775)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3775)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3775
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.145"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..429
                     /locus_tag="RJ267_001579"
     CDS             <1..429
                     /locus_tag="RJ267_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389415.1"
                     /translation="AFAFVIAILYIIFDFYVIKDSQKITKTDFSTPLTCDLNVKDCTY
                     SFNNKKVLISLNPKPLQSLDVTNLKIVNLGNYNNLGIKIYGLNMYMGEIKPKIHRLNS
                     TDYESKIVLAACVLDTMRFRVEFMDNNKPIGFYFDFELKK"
     gene            426..986
                     /locus_tag="RJ267_001580"
     CDS             426..986
                     /locus_tag="RJ267_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HDV7389416.1"
                     /translation="MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLK
                     DFKGDKLIIYFGYTYCPDVCPATLSLVGKALKQINNPKAHLLFISLDPNRDNNLSNTN
                     EWLRYFYPKADALIAKDEKTLQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEK
                     GHFYKEINDLNPQEILRELRIFLNSQ"
     gene            complement(993..1892)
                     /gene="cysM"
                     /locus_tag="RJ267_001581"
     CDS             complement(993..1892)
                     /gene="cysM"
                     /locus_tag="RJ267_001581"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HDV7389417.1"
                     /translation="MKVHEKVSELIGNTPIIHLKKFGINVFAKCEFLNPSHSIKDRAA
                     FEMIKDALDSKKINQDTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMI
                     TLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILR
                     DLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQG
                     IGANFIPAILNKEVIDEVITVSNEDAINTAKELAKSGLMVGISSGANVFAASMLAKKF
                     PDKRILTMLNDTAERYLSTDLFA"
     gene            complement(2019..2315)
                     /locus_tag="RJ267_001582"
     CDS             complement(2019..2315)
                     /locus_tag="RJ267_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HDV7389418.1"
                     /translation="MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISF
                     IGFGTFSTQERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKKK"
     gene            complement(2417..>3775)
                     /gene="ciaB"
                     /locus_tag="RJ267_001583"
     CDS             complement(2417..>3775)
                     /gene="ciaB"
                     /locus_tag="RJ267_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HDV7389419.1"
                     /translation="MEFLRKNHLYQKTPEGEICERSYGVLVRIGNLWKFVPYARFFEN
                     EILKLEFAFENMIDQLKIFASSEEEKAYIEYFEKLKLAFCEKDEDRVIKAWQEAEFAW
                     MKVKSPLQVGHPLEYYEDNYTHAVALEWDIRIEDENDFDVLKFGNEIKESFEHVYKNI
                     GLEDCELEKEVLSNIEKTQLYICTPMIFYGAELKGLFSAQVVPNDEFVSSKAGKKIFA
                     FINFVYENAKTKPFMKISSEVFDKEFLDFGRNILFYQEKIWKRVYEVSTIGHEFGHIF
                     FIANDTEKTMNQSGFFKNIEEYKATTGGLINFFYHEQDDLIMPVFHELIKRAIGLISW
                     QRVDEVRPYYTEGLIHLSLLFESEVLIFENNNLKINFDLGYYEKFKELTLKNYHELAK
                     HYALRLDAKEFLSRFCEIEDNIFLPIMPKCKEFVKFYYDLYEKIGNEIDNSGEFERYK
                     KK"
BASE COUNT         1315 a          637 c          417 g         1406 t
ORIGIN      
        1 gcttttgctt ttgttattgc tattttatat attatttttg atttttatgt aataaaagat
       61 tctcaaaaaa taacaaaaac tgatttttct accccattga cttgcgatct taatgttaaa
      121 gactgcacat atagttttaa caataaaaaa gtcttaattt ccctaaatcc caaaccctta
      181 caatctttag atgttacaaa tctaaagatt gtaaatctag gaaattataa caacttagga
      241 attaaaattt atggattaaa tatgtatatg ggcgaaatta aacctaaaat acatcgatta
      301 aattcaacag actatgaaag taaaatagtt cttgctgctt gcgttttaga tactatgcgt
      361 ttcagggtag aatttatgga taataataaa cccatagggt tttattttga ttttgagcta
      421 aaaaaatgaa aaaaaatatt attttgttta tagttatagt tgccattatt ttaggtgtaa
      481 tattttttat taaaaatcat caaaattctt atgattttat cttaaaatca gacttaaaag
      541 aggaaaccac cctaaaagat tttaaaggag ataagcttat tatctatttt ggatatactt
      601 attgccctga tgtttgtccg gcaactctta gtttagtagg caaagcctta aagcaaatca
      661 ataatcctaa ggctcacctt ctttttattt ctttagatcc aaatagagat aataacttaa
      721 gcaatacaaa cgaatggtta cgatactttt acccaaaagc agatgcctta attgcaaaag
      781 atgaaaaaac tcttcaaaaa ataacaaaac aatataatgt tcaatatcaa aaaatagatc
      841 taaatgattc ttttatgggt tattctatag cacatagcaa tatgctttat cttattgatg
      901 aaaaaggtca tttttataaa gaaattaacg atttaaatcc acaagaaatt ttaagagaac
      961 ttagaatttt tctaaattct caataattat acttaagcaa aaagatcggt tgagaggtat
     1021 ctttcagccg tatcgtttag catagttaaa attcttttat ctggaaattt ctttgctagc
     1081 atacttgcgg caaatacatt tgctccactt gatataccta ccattaaacc acttttggca
     1141 agttctttgg ctgtatttat agcatcttca ttacttactg tgatcacttc atctataact
     1201 tctttattta aaatagcagg tataaaattc gcccctattc cttgtatttt atggcttccc
     1261 gcttcacctt tgctaagcaa tggagaattt agaggctcga ctccaacaat atgcactttt
     1321 tctaattttt cttttagtat ttccccaact ccactaatag taccgccagt tccaaaacca
     1381 gctacaaaaa tatcaagttc attatccaaa tctcttaaaa tttctaaagc cgtattctta
     1441 cgatgcgcat ttttatttga aatattttca aattgagaaa ccataaaaga atttggagta
     1501 tttaataata tttcatttgc tttatcaacc gctcctttca ttcctaaatt tgcaggagtt
     1561 aattctaacc tagcgccaaa gagtgttatc atttttcttc tttctaaact catagattcg
     1621 ggcattacag caataaattt aagtcccaaa tctgcacaaa tcatagccaa agaaattcca
     1681 gtatttccac tagttgcttc aactattgta gtatcttgat taattttttt actatctaaa
     1741 gcatctttaa tcatttcaaa agctgctcta tcttttatag aatgactagg atttaaaaat
     1801 tcacatttag caaaaacatt gataccaaat tttttcaaat gtataatagg agtatttcct
     1861 ataagctcac ttactttttc atgtactttc ataattttaa tatccttttt tgtttaataa
     1921 tgatagtttt ataaaagttt aaaaaaataa agtaaataaa agatacaaaa tatctgaatt
     1981 aattaagaaa gaaggctaga atttatctag ccgaagtttt attttttctt tttgccgctt
     2041 gcttttgcaa cagcttcttt aaggttttta cctaccttaa attttgcaac tcttgtagca
     2101 ggaactttga ttgtttttcc tgtgcttggt actctagctt ctctagcagc tctttcttga
     2161 gttgaaaaag taccaaaacc aataaaactg atgctatcac ctttagctaa aacatcagta
     2221 atagtagaaa taactgcatc agtagcagta gtagcgtctt tttttgttag cccagctgtt
     2281 tgagcaacta atgaaatgaa atctgcttta gtcataaaag ctcctttgtt ttaattgaaa
     2341 cgcctaattt tagcatattt aaaaaacaat atcaagtaaa aaacagcttt ttttaagttt
     2401 ttttcaaaaa actttattat tttttcttat atctttcaaa ttctccacta ttatcaattt
     2461 cattaccaat tttctcgtat aaatcataat aaaatttaac aaattcttta cacttaggca
     2521 taataggaag aaaaatatta tcttcaattt cacaaaatct acttaaaaac tcttttgcat
     2581 caagtcttaa agcatagtgt tttgccaatt catgataatt ttttaaagtt agctctttaa
     2641 atttttcata ataccctaaa tcaaaattta tcttcaaatt attattttca aaaatcaata
     2701 cttcgctttc aaaaagcaag ctaagatgaa taagtccttc cgtataataa ggtctaactt
     2761 catcaaccct ttgccaagaa ataagtccaa tagctctttt tataagttca tgaaaaacag
     2821 gcattatcaa gtcatcttgt tcatgataaa agaaatttat aagtccacct gtagtagctt
     2881 tatattcttc tatattttta aaaaaaccac tctgattcat tgttttttcg gtatcattag
     2941 caataaaaaa tatatgacca aattcatggc ctatagttga tacttcataa acccttttcc
     3001 aaattttttc ctgataaaat aaaatatttc ttccaaaatc caaaaattct ttatcaaaaa
     3061 cctcgctaga aattttcata aaaggctttg ttttagcatt ttcatataca aaatttataa
     3121 aggcaaatat ttttttgccc gccttagaac ttacaaactc atcatttgga acgacttgag
     3181 ctgagaataa acctttaagt tcagcaccat aaaatatcat cggagtgcaa atataaagtt
     3241 gagttttttc tatattagat aaaacttctt tttctaattc acaatcttca agtcctatat
     3301 ttttataaac atgttcaaaa ctttccttaa tttcattacc aaatttcaaa acatcaaaat
     3361 cattttcatc ttctattctt atatcccatt ctaatgccac cgcatgagta taattatctt
     3421 cataatattc taaaggatgt cccacttgta aaggtgattt tactttcatc caagcaaatt
     3481 cagcttcttg ccaagctttt ataaccctat cttcatcttt ttcacaaaac gctaatttta
     3541 atttttcaaa atattctata taagcttttt cctcttcgct gctagcaaat attttaagct
     3601 gatcaatcat attttcaaaa gcaaattcta attttaaaat ttcattctcg aaaaatctcg
     3661 cataaggaac aaatttccat aaatttccta ttctaactaa aacaccatag cttcgctcac
     3721 aaatttctcc ttctggagtt ttttgatata aatgattttt acgtaaaaat tccat
//
LOCUS       DAPIWQ010000144         3770 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.146, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000144 DAPIWQ010000000
VERSION     DAPIWQ010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3770)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3770)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3770
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.146"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            21..2141
                     /locus_tag="RJ267_001584"
     CDS             21..2141
                     /locus_tag="RJ267_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDV7389420.1"
                     /translation="MHPNKKAFKLSLFALLLITNLNAQESNKAINLQKVVVSTTGFEQ
                     DADSNLRNVISIEGKDLQNKGYVSLEQALERISGISFVNFGLGRNIDMRGQGDKSNIA
                     VKVMIDGRAINVLDNSHGVTPLDSINLDNVERIEIIPGGGSVLYGSGTRGGVINIITK
                     KQKSDAFAINLKSSAYDHGGLGGNLGINGAKQINENLAFSFDIQSFNLDGYQEGYNEK
                     GYFINTKTYININDNSDLTLGYNYFKSKNTSSGYLTKAQAQSDPTQKGNSDNITQINR
                     PEISLDYHYYFDDIWEFNLEAFWQNQKINYLKDVSTMSYGSMSLPVYQNGSGFEDTLT
                     GISLKNKLNYANNSYFIFGYEFANHDAKRTSIIHYDVNAGRFQMSHTMTTLMDMDKQS
                     HSIFALDSHEFNDIFSISGGARYEYSLYDTNRNYTSNMIIPGRPNIKTELFSTDDTSH
                     NFAFEITPNFKYSDTGKLYIKYERGFVSPSPAQFVNKDKNLQKYYSANLNPEIFDTFE
                     LGIDDFWWDFYGFNLTLFYTLSKDEISYLGNPHSTSGSWWKYYNIDQTRRLGVELSLS
                     QNFLDDDLIFRESLTYLDAKISKGVNDGMRIPYVSKIKATAGFEYAWNKNFSNFIDLT
                     YFSRAKDGGTIDENTGKMSKNSWIRDYFLTDIGMKYNYKKLQILAGIRNLFDKRYYTY
                     QDSINDQYLVGNGRNYYVEFKYAF"
     gene            2116..3102
                     /locus_tag="RJ267_001585"
     CDS             2116..3102
                     /locus_tag="RJ267_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDV7389421.1"
                     /translation="MLNLNTHSKILVIIGLLVAYIIASFTALCLGDENLNPKELFSYI
                     FSQDEILRQIIIDGRLPRIIMAILIGMLLASSGAITQNVFSNPIADPYIIGIASAATF
                     GAVLAYLLKLNDYYYGILGFVCSAFFALGVFKISSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGNASWFRVGILILPLIFCLFYFYAHKNELNILLSGDD
                     EARNLGVNAQKLKINLLIVSSLAVSFAVAFSGLIGFVGLIIPHTIRLLLKNYDNALVI
                     PLCTAFGGLFLLICDTLARTLLAPVQIPIGILTAFFGAPIFLYLALSARRFL"
     gene            3102..>3770
                     /locus_tag="RJ267_001586"
     CDS             3102..>3770
                     /locus_tag="RJ267_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7389422.1"
                     /translation="MLKIHDLSFAYHQKDLLKNIHLELKNQAFIGILGPNGSGKSTLL
                     KLILKNLSPNKGVISLFNTNIKDFSLKEFAKICGFVPQKSELNTPLKVIDVLLMSKYA
                     NLKHAFSSYSKEDILEIQEFAKDLRLENFLERSILSLSGGEFQRMLLARALLKKPKIL
                     FLDEPTSALDLNYAIELLSLCEKLVKEKNIAIVAILHDLNLASMFCDKILFLKEGEIK
                     YFGTI"
BASE COUNT         1298 a          549 c          624 g         1299 t
ORIGIN      
        1 ttttatttaa ggagtaaaat ttgcacccaa ataaaaaagc ttttaaatta tctttatttg
       61 cattattgct aataactaat ttaaatgcac aagaatcaaa taaagctatc aatctacaaa
      121 aagttgttgt tagtacaaca ggttttgaac aagatgcgga ttcaaattta cgcaatgtaa
      181 tcagcataga aggcaaagat ctacaaaata aaggttatgt ttccttagaa caagccttag
      241 aaagaatttc aggcattagt tttgtaaatt ttggacttgg acgcaatata gacatgcgtg
      301 gacaaggaga taagtccaat atagctgtaa aagttatgat cgatgggcgt gctattaatg
      361 ttcttgataa ttcccatggt gtaaccccgc tagatagtat caatttagat aatgtagaac
      421 gcatagaaat catacctggg ggtggatctg tgctttatgg aagtggtact agagggggcg
      481 tgattaatat cattacaaaa aaacaaaaat cagatgcttt tgctataaat ttaaaaagca
      541 gtgcctatga tcatggtgga ctaggtggaa atttaggtat caatggcgcc aaacaaataa
      601 atgaaaattt agcttttagc tttgatatac aaagttttaa ccttgatgga tatcaagaag
      661 gttataatga aaaaggttat tttatcaaca caaaaaccta tattaatatc aatgataata
      721 gcgatttaac tttgggttat aattatttta aaagcaaaaa taccagcagt ggctatctaa
      781 caaaagcaca agctcaaagc gatccaaccc aaaaaggcaa tagtgacaat atcacacaaa
      841 tcaatcgccc tgaaatttct ttggattatc attactattt tgatgatata tgggaattta
      901 acctagaagc tttttggcaa aatcaaaaga tcaattatct aaaagatgtt tctacaatga
      961 gttatggaag tatgagtctt cctgtatatc aaaatggaag tggttttgaa gacacactta
     1021 cagggataag tttaaaaaac aagctaaatt atgcaaataa ttcttatttt atttttggtt
     1081 atgaatttgc aaaccatgat gcaaaaagaa caagcattat tcattatgat gtaaatgccg
     1141 gcagatttca aatgagtcac accatgacaa cgcttatgga tatggataaa caaagccatt
     1201 ctattttcgc tcttgattct catgaattta acgatatttt tagtatttca ggtggagcaa
     1261 gatatgaata tagtctttat gacacaaata gaaattacac tagcaatatg ataatacctg
     1321 gaagacctaa tattaaaact gaactttttt cgaccgatga tacaagtcat aacttcgcct
     1381 ttgaaatcac tccaaatttt aaatactcag acacaggaaa gctttatatc aaatacgaaa
     1441 gaggttttgt ctctccaagt ccagcacaat ttgtcaataa ggataaaaat ttacaaaagt
     1501 attattctgc aaatttaaat cctgagatct ttgatacctt tgaactagga attgatgatt
     1561 tttggtggga tttttacggc tttaatctaa ctttatttta caccctaagc aaagatgaaa
     1621 tttcttatct tggaaaccct cattctacta gtggatcttg gtggaaatat tataatatag
     1681 atcaaactcg ccgtctagga gtagaattaa gtctgagtca aaatttctta gatgatgatt
     1741 taatctttag agaaagtcta acttatcttg atgctaaaat ttctaaaggc gttaatgacg
     1801 gcatgagaat tccttatgtt tcaaaaatca aagccacagc tgggttcgaa tacgcttgga
     1861 ataaaaattt ctcaaatttt attgatttaa cctatttttc tagagcaaaa gatggtggaa
     1921 ctatagatga aaatacagga aaaatgtcta aaaattcttg gataagggat tattttttaa
     1981 cagatattgg tatgaaatat aattataaaa aattacaaat tttagcagga attcgcaatc
     2041 ttttcgataa aagatactac acctatcaag acagtataaa tgatcaatac ctagttggga
     2101 atggcagaaa ctactatgtt gaatttaaat acgcattcta aaattttagt gattataggg
     2161 cttttggtag cttatataat cgcttctttt acagcacttt gtttaggaga tgagaattta
     2221 aacccaaaag aacttttttc atatatcttt agccaagatg aaattttaag acaaatcatc
     2281 atagatggac gcttgccacg cattataatg gcgattttaa tcggtatgct tctagctagt
     2341 agtggggcta tcactcaaaa tgtattttca aatcctatag ccgatcctta tatcataggt
     2401 atagcttctg cggcaacctt tggagcggtt ttagcgtatt tgttaaaatt gaatgattat
     2461 tattatggaa ttttaggttt tgtttgctct gccttttttg ccctaggagt ttttaaaatt
     2521 tcttctaaag cttctatagc gactttactc attatcggca tagcagcttc atctttttta
     2581 ggagctttta cttctttttt cacttatctt ataggcgagg attcttttaa aatagtcgct
     2641 tggctcatgg gaaatatagg caatgcttct tggtttcgtg tgggtatttt aatcttgcct
     2701 ttaatttttt gtttgtttta tttttacgct cataaaaacg aattaaacat acttttaagc
     2761 ggagatgatg aagctagaaa tctaggggta aatgctcaaa aattaaagat aaatttactc
     2821 attgtctcat ccttagctgt atcttttgcg gttgctttta gtggacttat aggctttgtt
     2881 ggactcatca ttcctcatac tataagactt ttgcttaaaa actatgataa tgccttggtt
     2941 atccctttat gtacagcatt tggaggatta tttttactta tttgtgatac tttagcaaga
     3001 actcttttag ctcctgtgca aattccgatt ggaattttaa ctgcattttt tggagctcct
     3061 atttttttat acttggcttt aagcgctagg agatttttat aatgctaaaa atacatgatt
     3121 taagctttgc ttatcaccaa aaagatttac taaaaaatat tcatttagaa cttaaaaacc
     3181 aagcttttat aggaatttta gggccaaatg gctcaggcaa aagcactctt ttaaaactta
     3241 tacttaaaaa tttaagtcca aataaaggag tgataagtct ttttaacaca aatatcaagg
     3301 atttttctct taaagaattt gccaaaattt gcggatttgt gcctcaaaaa tcagaattaa
     3361 acaccccttt aaaagtcatc gatgtgcttt taatgagcaa atatgcgaat ttaaaacacg
     3421 cttttagttc ttattctaaa gaagatattt tagaaattca agaatttgct aaggatttaa
     3481 gacttgaaaa ttttctagaa agaagcatac tttctttaag tgggggtgaa tttcaaagaa
     3541 tgcttttagc aagagctttg cttaaaaagc caaaaattct ttttttagat gaacccactt
     3601 cagcccttga tttaaactat gctatagagc ttttaagtct ttgcgaaaaa ctagttaaag
     3661 aaaaaaatat tgccattgtt gctatcttac atgatttaaa tttagcttct atgttttgtg
     3721 ataaaatcct ttttttaaaa gaaggggaaa taaagtattt tggaacaatc
//
LOCUS       DAPIWQ010000145         3664 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.147, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000145 DAPIWQ010000000
VERSION     DAPIWQ010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3664)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3664)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3664
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.147"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            34..1056
                     /locus_tag="RJ267_001587"
     CDS             34..1056
                     /locus_tag="RJ267_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389423.1"
                     /translation="MNLKIFSIIVGILIAVIVILGGTYYYLFEYSKPKNYTLNTNTYT
                     EQKSYTNNYDNPYSPSIQTNNSSSNVNTNNNTIQKQETNPLLDENQSLNNDTFNISIS
                     ENNQSLNNDTNTSNNINTNENKQILDTDKEKLKQENKQAKIEALKKEISKQQKILERE
                     RAIKKELQSNKSNKNKYLNTAREYLSIGKNSRLEPELSTENMKVYILDGKFLSQYRIN
                     LLKDMLSIIQDNAKDYYLSIFVKMLPKGEMKLTIYNKEIIFSDMKKAYKYISLDRLSP
                     YLNNPKELNEHVAREEILERLKLQIKKDGKGSDFSKHIKSLKTGLNTAQYFFPFCEII
                     EISSIK"
     gene            1079..>3664
                     /locus_tag="RJ267_001588"
     CDS             1079..>3664
                     /locus_tag="RJ267_001588"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HDV7389424.1"
                     /translation="MYDKNLEKEYYQICEERGYFEIDGNKTIQEKDKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLAQGIKKE
                     ELGREEFIEKVWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLVNAVKKAFVELY
                     DKRLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYFLKDSDEFLVVATTRPET
                     FFGDTAVMVHPDDERYAKFVDKEVILPISKKAIKIIADKHVEKEFGTGVVKVTPAHDM
                     NDYEVGLRHNLDFISVFDEKGILNEHCLEFQGLERLEAREKIVAKLESLGFIEKIEEY
                     NNQIGYCYRCNNIVEPYISKQWFVKKEIAQESIEKVALGESKFYPNHWINSFNAWMKD
                     LRDWCISRQLWWGHQIPVYYCECSHEWASQHTPKTCPKCQSQNFKQDEDVLDTWFSSG
                     LWAMSTLGWGNENWGKDKIWSEKDLKDFYPNSLLITGFDILFFWVARMMFQSTNVLHQ
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNAKNYLLLNESKFEDLENITLHSELAKYIYAKFQTCVKDVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAEKSSVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSDTELKTSPSIMISKYPKFKEQDKNIEKIFSLLIESIVSIRRAKSLIDLG
                     NSKIEKAYIKFNDKKIKDEIKAYMNFIIMLAKCEQIEFSEEKLPKAICDVSENLEIFI
                     TLENVDLSGILTRLENQKNKLEKESFKLNSMLSNEKFIANAPKEVVEQNKEALENLKI
                     QLEKIS"
BASE COUNT         1490 a          501 c          597 g         1076 t
ORIGIN      
        1 attatttaac tttctatttt taagggatag caaatgaatt tgaaaatttt ttctattatt
       61 gttggcatat taattgctgt tattgtaata ttaggtggaa cctattatta tctttttgaa
      121 tattcaaaac caaagaatta caccttaaat accaacactt acaccgaaca aaaatcgtat
      181 accaataact acgataatcc ctattcaccc tcgatccaaa ccaacaatag ttcatcaaat
      241 gtaaatacta acaacaatac catccaaaag caagaaacaa acccattatt agatgaaaat
      301 caaagcttaa ataacgatac atttaatata tcaataagcg aaaacaatca aagcttaaat
      361 aatgacacca atacaagtaa taatattaat acaaatgaaa ataagcaaat tttagatacg
      421 gataaagaaa aattaaaaca agaaaataaa caagccaaaa tagaagctct taaaaaagaa
      481 atcagcaaac agcaaaagat cttagaaaga gaaagagcta taaaaaaaga acttcaatca
      541 aacaaatcaa acaaaaataa atatctaaat accgctagag agtatctaag cataggaaaa
      601 aacagtcgtt tagaacctga gcttagcaca gaaaatatga aagtttatat tttagatgga
      661 aaatttttaa gccaatacag aatcaatctg ttaaaagata tgctaagcat tatacaagat
      721 aatgcaaaag attattatct aagtattttt gttaaaatgc taccaaaagg ggaaatgaaa
      781 ttaactatct ataacaaaga aattatcttt tcagatatga aaaaagctta taaatatatt
      841 agtttagata gattaagccc atatttaaac aatccaaaag aattaaatga acatgtagca
      901 cgtgaagaaa ttttagaaag acttaaactt caaattaaaa aagatggcaa aggaagtgat
      961 ttttctaaac atatcaaaag tttgaaaact ggacttaata cagcacaata tttcttcccg
     1021 ttttgtgaaa ttatagaaat tagctctatt aaataagcta aaacaataaa ggcaaataat
     1081 gtatgataaa aatttagaaa aagagtatta tcaaatttgc gaagaacgcg gatattttga
     1141 aatcgatggc aataaaacca tacaagaaaa agataaaaat ttctgcatta tgatgcctcc
     1201 tcctaatgtc actggagttt tacacatagg acatgcttta acttttactc tacaagatat
     1261 tatgacgcgt tataaaagaa tggatggcta taaggttctt tatcaaccag ggcttgatca
     1321 cgcaggtatt gccactcaaa atgttgtaga aaaacaactc cttgctcaag gcattaaaaa
     1381 agaagaacta ggtagagagg aatttataga aaaagtctgg gagtggaaag agcaaagcgg
     1441 tggaaaaatt ttagaccaaa tgagaacact aggcatcact cctgcatgga gtcgcttgcg
     1501 ttttactatg gatgaaggtt tggttaatgc cgtaaaaaaa gcctttgtag aactttatga
     1561 taaaagactt attgtacgtg gaaactacat gataaattgg tgtactcatg atggcgcttt
     1621 aagtgatata gaagttgaat acaaagaaaa caaaggaaaa ctttatcata ttaaatactt
     1681 tttaaaagat agcgatgaat ttttagtagt agccacaacg cgtcctgaaa ctttttttgg
     1741 cgatactgca gttatggtgc atcctgatga tgaacgctat gctaaatttg tggacaaaga
     1801 agtgattttg cctataagca aaaaagccat taaaatcata gccgataaac atgtagaaaa
     1861 agaatttgga acaggagttg taaaagttac tcccgctcat gacatgaacg attatgaagt
     1921 aggacttaga cataatttag attttataag tgtttttgat gaaaaaggaa ttttaaacga
     1981 gcattgttta gagtttcaag gtttagaacg cttagaagca agagaaaaaa tcgtagccaa
     2041 acttgaaagt cttggtttta tagaaaaaat agaagagtat aacaatcaaa taggatattg
     2101 ttatcgttgc aacaatatag ttgaacctta tatctccaaa caatggtttg taaaaaaaga
     2161 aatcgcccaa gaaagtatag aaaaagttgc gcttggagaa agtaaatttt acccaaatca
     2221 ctggataaat agctttaatg cttggatgaa agatttaaga gattggtgta tttcaagaca
     2281 actttggtgg gggcatcaaa ttcctgtgta ttattgcgaa tgctctcatg aatgggcaag
     2341 ccaacatacg cctaaaactt gtccaaaatg tcaaagtcaa aatttcaaac aagatgaaga
     2401 tgtgcttgat acttggtttt cttcaggact ttgggctatg agtactctag gctggggaaa
     2461 tgaaaattgg ggtaaagata aaatttggtc tgaaaaggat ttaaaagatt tttatcccaa
     2521 ttctttactc attacaggtt ttgatatttt atttttctgg gtggctagaa tgatgtttca
     2581 aagcaccaat gtcttacatc aacttccttt taaagatatt tatttacatg ctcttgtgaa
     2641 agatgagcaa ggtagaaaaa tgagtaaaag ccttggaaat gttatcgacc caaatgaaag
     2701 cattaaagaa tatagtgctg atattttacg ctttacttta gcacttcttg ctatacaagg
     2761 acgcgatatt aaacttagca atgataaact tttacaagtt agaaatttta caaataaaat
     2821 ttataatgct aaaaattatc tgcttttaaa tgaaagtaaa tttgaagatt tggaaaatat
     2881 cacacttcat tcagaattag caaaatatat ttatgccaaa tttcaaactt gtgttaagga
     2941 tgtaagagaa aatttagaca attatcgctt taatgatgcg gctaatactc tatataaatt
     3001 cttttgggat gatttttgcg attggggtat agagcttagc aaagccgaaa aatcaagcgt
     3061 taaagaactt ggtagtattt tcaaagaagc tttaaaactt ttaaatcctt tcatgccttt
     3121 tatcagcgag tatttatacc acaaactaag cgatacagaa cttaaaacaa gcccttctat
     3181 tatgataagc aaatatccaa aatttaaaga acaagataaa aatatagaaa aaatcttttc
     3241 tttgctcata gaaagcatag ttagtatccg ccgtgctaaa agtttaatcg atcttggaaa
     3301 ttctaaaata gaaaaagctt atatcaaatt taacgataaa aaaatcaaag atgaaatcaa
     3361 agcttatatg aattttatca taatgctcgc aaagtgcgag caaatagaat ttagtgaaga
     3421 aaaattacca aaggcaatat gtgatgttag cgagaattta gaaattttta ttacgcttga
     3481 aaatgttgat ttaagtggta ttttaacaag acttgaaaat caaaaaaata agcttgaaaa
     3541 agaaagtttc aagcttaact ccatgctttc aaatgaaaaa ttcatcgcta acgcacctaa
     3601 agaggtggtg gagcaaaata aagaagctct agaaaattta aaaattcaac ttgaaaaaat
     3661 atca
//
LOCUS       DAPIWQ010000146         3657 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.148, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000146 DAPIWQ010000000
VERSION     DAPIWQ010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3657)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3657)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3657
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.148"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..1239
                     /locus_tag="RJ267_001589"
     CDS             <1..1239
                     /locus_tag="RJ267_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HDV7389425.1"
                     /translation="ILKKGILHFDFTASALALKCVEKEILKILPTYANTHSDSSLNSF
                     KTQQTYEQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIYIPPLVKERYFTQ
                     IDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFLEKTLQKNKKRKI
                     IASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISCQYYDALFISSHK
                     LIGGIGGSGLLAIKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEALEEGGTPGILQL
                     IRASLAFKIKDSIGVKNIEKKEEILKDYFFEKLKTIPNLILYAKNLKTRLPIFAFNIK
                     GISPFDIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKPGWLRISLHYTHE
                     KEDIDYFFNALNKTIVKLSH"
     gene            complement(1236..2060)
                     /gene="purU"
                     /locus_tag="RJ267_001590"
     CDS             complement(1236..2060)
                     /gene="purU"
                     /locus_tag="RJ267_001590"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HDV7389426.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEGMFFF
                     RALLEGEFDKEAFIGTLEAMLGQEALIELCEKRKKDIVVFATKESHCLGDLLIKHYSN
                     ELEANIKAVISNHNSLKDLVEKFEIPYHFISAENLDRKEQENQILKCLEQYKFDYLVL
                     AKYMRILSPDFVRHFEGKIINIHHSFLPAFIGANPYKQAFERGVKIIGATAHFVNNNL
                     DEGPIITQAVSPVNHEFTWQDMQQAGRNIEKDVLSKALDLAFEDRIFIHNNKTIIF"
     gene            complement(2057..3175)
                     /locus_tag="RJ267_001591"
     CDS             complement(2057..3175)
                     /locus_tag="RJ267_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HDV7389427.1"
                     /translation="MQISKISLKNNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKI
                     CDYDIELYDIKPKDFEKIMQKLGAQGFGKSFFVYKFKNYDLALARTENKISYGHKGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGVGFLRHIDKQSFQEDSL
                     RVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELCKFFKSPRLDVGYRYLQ
                     ELGLEKQVFGFESVFKSSEFQNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRTKL
                     KKEYLKYANQAFYLDDISDFELAKIAFEMPLKEWLGLWSKKRIEQAKRLGLYENKFES
                     KILAKDFINAGFCGKILGLKLQEARENELKEYIKGLAK"
     gene            complement(3144..3635)
                     /locus_tag="RJ267_001592"
     CDS             complement(3144..3635)
                     /locus_tag="RJ267_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HDV7389428.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQNEILKEQELNRKTEIKDELP
                     PMEFVCEELDTPQDLEDKISMAKFEEEQKIQNNIEISTQENKEFKKEEPFLQNEILNP
                     SVMTEVQTLNEDIFLKHLRERILVLFEGLNSIKKDDLENRLNLTINFLEFLLANIEDK
                     LKK"
BASE COUNT         1256 a          634 c          453 g         1314 t
ORIGIN      
        1 atcttaaaaa aaggtatttt gcattttgac ttcacagcaa gtgctttagc tctaaaatgt
       61 gtagaaaaag aaattttaaa aattctccca acctatgcaa acacacattc tgatagctct
      121 ttgaattctt ttaaaactca acaaacttac gaacaagcaa gaaaagatat aaaaaaaagt
      181 ttatcattag atgaaaattt tgcccttata gcttgcggaa caggatcaag cagtgctatt
      241 aaaaaatttc aagaattgat cggcatttac attccccctc ttgtaaaaga aagatatttt
      301 acgcaaattg ataaaaatac cttaccttta gttatcgtag ggccttatga gcatcattct
      361 aatgaacttt catttcgaga aggcttgtgc gaatgtatta gaattccctt ggataaaaat
      421 ggagaaattg attttgattt tctagaaaaa actttacaaa aaaacaaaaa aagaaaaata
      481 atcgctagct tttctttagc ttcaaatgtt actgggatat taagtgatta caaacgcatt
      541 tctgaaatgg ttcgtaaatt taaagggata gttgcttttg atgcatctag tttcattccc
      601 tataaaaaca tatcttgtca atactatgat gcgttgttta taagttctca taaattaatc
      661 ggtggtattg gcggttctgg acttttagcc atcaaaaaag atctttgtgg aaacaaacct
      721 agctttgccg caggtggaac tgtgggctat gtttctcgca cttcacaatg ctacctttgc
      781 aatgaagaag ctttagaaga aggaggaaca cctggaattt tacaactcat tcgcgctagc
      841 ttagctttta aaatcaaaga ttctataggg gttaaaaata tagaaaaaaa agaagaaatt
      901 ttaaaagatt atttttttga aaaactaaaa actataccta atttaatttt atacgcaaag
      961 aatttaaaaa cccgattgcc tatttttgct ttcaatatca aaggaatttc tccttttgat
     1021 atcgcttacg aacttagtaa aaaataccac atagaaacac gcgctggatg tgcttgtgct
     1081 gggccttatg gtcatgattt gctaggctta aaagataatc aaaaacttaa aacaaaacca
     1141 ggttggttaa gaataagctt gcattatacg catgaaaaag aggatattga ttattttttt
     1201 aatgctttaa ataaaactat agtaaaatta tcgcattaaa atattatagt tttattatta
     1261 tgtataaaaa ttctatcttc aaaagccaaa tcaagtgctt ttgaaagaac atctttttct
     1321 atatttctac ctgcttgttg catatcttgc caagtaaatt catggtttac aggcgaaaca
     1381 gcttgagtga taataggacc ttcatcaaga ttattattta caaaatgtgc cgtagctcca
     1441 attattttaa cccctctttc aaaggcttgt ttataaggat ttgctcctat aaatgcaggt
     1501 aagaaagaat ggtgaatatt tataatcttg ccttcaaaat gcctaacaaa atcaggagat
     1561 aaaattctca tatattttgc caaaaccaaa taatcaaatt tatattgttc aagacatttt
     1621 aaaatctgat tttcttgctc tttacgatct aaattttcag cgctgataaa atgataagga
     1681 atttcaaatt tctcaactaa atcctttaaa gagttgtgat ttgaaatcac agctttgata
     1741 tttgcttcaa gttcgttact ataatgcttt attagcaaat ctcccaaaca atgactttct
     1801 ttagtagcaa aaacaacaat atcttttttt ctcttctcgc aaagctctat caaggcttct
     1861 tgtccaagca tagcctcaag cgttcctata aaagcttctt tatcaaactc accttctaaa
     1921 agagcacgaa aaaaaaacat tccttcacct acaaattcat cgttttttac tatattgata
     1981 tgatatttaa aaataacatc agaaattcta taaattaaac ctttttgatc tttggtgcaa
     2041 atttttaata cagaaatcat ttagctaaac cttttatata ttcttttaat tcattctctc
     2101 ttgcttcttg aagctttaaa ccaagaattt taccacaaaa tccagcattt atgaaatctt
     2161 ttgctaaaat tttactttca aacttattct cataaagccc taatctttta gcttgctcaa
     2221 tacgcttttt actccaaagt ccaagccatt ccttcaaagg catttcaaaa gcaatttttg
     2281 ctagttcaaa atcacttata tcatcaagat aaaaagcttg atttgcgtat tttaggtatt
     2341 cttttttaag tttagttctt ttaaaaaata tatctttttc taaattaaaa aaattcaaat
     2401 acaaatacaa gaataaagca tcgcttttta caaattctct actttgtctg agtaaatttt
     2461 gaaattccga actcttaaaa acactctcaa agccgaaaac ctgtttctct aagccaagtt
     2521 cttgtaaata tctatagcca acatcaagtc taggactttt aaagaattta caaagctccg
     2581 cattgatcct atctttgcta agatcagtta tatccatact ttgcatcaat ttcaagcttt
     2641 cactagttat cttaaagtta aaccttgagg caaatactac tgctcttaat acccttaaac
     2701 tatcctcttg aaagctttgt ttatcaatat gccttaaaaa gcctactcct agatctttta
     2761 atcctccata aaaatctaaa aactcatcgt taaaaagatt aatcatcata gaatttatgg
     2821 taaaatcgcg tcttttggcg ccaagttttt catcattgca aatttgaact tcaaaacctt
     2881 tatgtccata gcttatttta ttttcggttc tagcaagagc taaatcataa tttttaaact
     2941 tatatacaaa aaaacttttt ccaaagcctt gtgcgcccaa tttttgcata atcttttcaa
     3001 aatctttagg ttttatatca taaagctcta tatcatagtc gcaaattttt aaacctaaaa
     3061 acaaatccct aacgctacct ccaaccaaat acgctcgttt ggtataaggc tttaaaaact
     3121 cagcgataaa ctgtaaatcg ggattatttt ttaagcttat cttcgatatt tgcaagcaaa
     3181 aactctaaaa aatttatggt caagtttaac ctattttcaa gatcatcttt ttttatgcta
     3241 tttaaacctt caaaaagaac taaaattctc tctctaagat gttttaaaaa aatatcctca
     3301 ttaagcgttt gaacctctgt cataacacta ggatttaaaa tttcattttg taaaaaaggc
     3361 tcttcttttt taaactcttt attttcctga gtagaaattt caatattatt ttgtattttt
     3421 tgctcttctt caaattttgc catagaaatt ttatcttcta agtcttgcgg agtatcaagc
     3481 tcttcgcata caaactccat aggtggtaat tcatctttta tttcagtttt tctatttaat
     3541 tcttgttctt ttaaaatttc attttgtctt ctttgctctt ccatgataga gctaacttcg
     3601 ctaatggttt ttttagctaa atcttccaaa ttcatatttt tatcaaccac cttttaa
//
LOCUS       DAPIWQ010000147         3649 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.149, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000147 DAPIWQ010000000
VERSION     DAPIWQ010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3649)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3649)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3649
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.149"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..252
                     /locus_tag="RJ267_001593"
     CDS             <1..252
                     /locus_tag="RJ267_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HDV7389429.1"
                     /translation="LNEKVYRNLDQIEEKIDTLILFRKGEVALEILPKLVEKNIKNLW
                     LQLDISNETAKEECKKLDINFIQNRCIMLEYPYFKTKEK"
     gene            252..1463
                     /locus_tag="RJ267_001594"
     CDS             252..1463
                     /locus_tag="RJ267_001594"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HDV7389430.1"
                     /translation="MLELNKIYKAKQQISGFVNKTPFIYSSFLSDICQSEIYLKNENL
                     QITGAYKIRGAYNKIANLSTEQKQHGVIAASAGNHAQGVAISAKKFSIKAVIVMPEST
                     PLLKVSATKALGAEVILRGDNFDEAYAFATSYAKENNLSFIHPFEDEFVMAGQGTLML
                     EMLDEISDLDMIIAPVGGGGLISGISSTAKQINPNIKIIGVGAKGAPAMYESFHAKKI
                     KNAKSVRTIADGIAVRDANPINFNIILECVDDFIQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVAALLHQKINTQNHKKIGVVLSGGNIDAQMLNIIIEKGLFKSYRKMQIYVTLV
                     DKPGALLHLTDSLKIANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL
                     TQKAFNFYESF"
     gene            complement(1460..2185)
                     /gene="truA"
                     /locus_tag="RJ267_001595"
     CDS             complement(1460..2185)
                     /gene="truA"
                     /locus_tag="RJ267_001595"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HDV7389431.1"
                     /translation="MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHLGIFSPL
                     LMASRTDKGVHASYAVASVECGDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVR
                     FDVKSREYRYIFSHASYSPFMASYVHFYPKFDLGKANELLGFFVGKKDLKFFCKSGGD
                     NKTTLREIFIARAYAYKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQI
                     EAKKQYNHFLAPPNGLYLSRICY"
     gene            complement(2182..3207)
                     /locus_tag="RJ267_001596"
     CDS             complement(2182..3207)
                     /locus_tag="RJ267_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HDV7389432.1"
                     /translation="MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEI
                     SFLDLLKLYGFMLPRILIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKF
                     FLKIASLISAFMLVVALVMIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFI
                     EKQDSDKYENIIMYRPKHKADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQS
                     IFSGEFDTLVVNTQFNTDNLQTKKFYEYWNDLNENPQRAREFVIYTTIALFPLASTLF
                     ALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFSQPPILACLGIFSLSLFVSAYCFK
                     KMILSRY"
     gene            complement(3207..>3649)
                     /locus_tag="RJ267_001597"
     CDS             complement(3207..>3649)
                     /locus_tag="RJ267_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDV7389433.1"
                     /translation="DIKLKAVPQILLWSAFLFAFFYAFRESEILHFLIFKEFSGGFLL
                     NAFSFGGFVFLLKSLVFFLMNFQKKDEILENLGDADIIIMSCIGGILGFEYGFLVLFI
                     ASILTLPFFIFFRIKAIKEQELAMIPFLNIAFVAVLFYKNLGLF"
BASE COUNT         1442 a          592 c          505 g         1110 t
ORIGIN      
        1 ttaaatgaaa aagtttatag aaatttagat caaatagaag aaaaaatcga tacacttata
       61 ctttttagaa aaggtgaagt ggcgctagaa attcttccta agcttgttga aaaaaatatt
      121 aaaaacctat ggcttcaact tgatattagt aatgaaacag ccaaagaaga atgtaaaaaa
      181 ttagatataa attttataca aaatcgttgc attatgctag aatatccgta ttttaaaaca
      241 aaggaaaaat agtgttagag cttaataaaa tttacaaagc aaaacaacaa atttcaggat
      301 ttgtaaacaa aactcctttc atatactctt cttttttaag tgatatttgt caaagtgaga
      361 tttatcttaa aaatgaaaat ttacaaatta caggtgctta taaaattcgt ggagcttaca
      421 ataaaatagc caatcttagc actgaacaaa aacaacatgg agtcattgca gcaagtgcgg
      481 gaaaccatgc tcaaggcgtg gccattagtg caaaaaaatt tagcattaaa gcagttatcg
      541 taatgccaga atccactcca ctcttaaaag tttctgctac aaaagcctta ggagcagagg
      601 tgatactcag aggagataat tttgatgaag cctatgcttt tgcaacctct tatgctaaag
      661 aaaataatct tagctttatc catccttttg aagatgaatt tgtaatggca ggacaaggaa
      721 ctttaatgct tgaaatgctt gatgaaataa gcgatcttga tatgattatt gcacctgttg
      781 gaggcggagg acttataagc ggtatctcaa gtacagctaa acaaatcaat cctaacatta
      841 aaatcatcgg agttggagcc aaaggagctc ctgcaatgta tgaaagtttt catgctaaaa
      901 aaatcaaaaa tgcaaaaagc gtacgcacta tagccgatgg tattgctgtg cgtgatgcaa
      961 atcctataaa ttttaacatt atcttagaat gtgtagatga ttttatccaa gttgatgatg
     1021 aagaaatagc taatgcggta ttgtttttac tcgaaaaaca taaaatcata gtcgaaggtg
     1081 cgggagctgc gagtgtagcc gccctgcttc atcaaaaaat aaatacacaa aatcataaaa
     1141 aaattggcgt agttttaagc ggaggcaata tcgatgcaca aatgctaaat atcatcatag
     1201 aaaaaggttt atttaaatct tacagaaaaa tgcaaattta tgttacttta gtagataaac
     1261 ctggggcatt attacacctt acagacagct taaaaatagc caatgcaaat atagtaaaaa
     1321 tcgactatga tagattttct accaagcttg attatggcga tgcgatgatt tcaattactc
     1381 tagaaaccaa aggtaaagaa catcaagaag aaataagaaa aattttaacc caaaaggctt
     1441 ttaatttcta tgaaagtttt taataacata tacggcttaa ataaagccca tttggcggtg
     1501 ctaaaaagtg attgtattgc tttttagcct caatctgttc tttgagttct ttttcactca
     1561 tttttccttc taaaactttt aaaacgcttg ctacgcttaa tctaatttgc cctcttaaaa
     1621 aaccattagc tttaaaatga aaaatgctaa aatctttata agcataagct ctagcaataa
     1681 aaatttctct taaagtcgtt ttattatccc ctccactttt gcaaaaaaac tttaaatcct
     1741 tttttcctac aaaaaaaccc aaaagttcat tagctttacc taggtcaaat ttaggataaa
     1801 aatgtacata agaagccata aaaggactat aagaagcgtg agaaaatata tagcggtatt
     1861 ctctactttt tacatcaaat cttacttcaa aatcatcttt tactttttca atttttttga
     1921 tatggataaa aggatgggaa aatttattaa gttgtttttg aagatattct aaatttgtaa
     1981 aataatctcc acactccaca ctagctacag catagcttgc atgtactcct ttatctgtac
     2041 gagaagccat caaaagaggt gaaaaaatac ccaaatgcga taaggcccca cttaaagcat
     2101 cttgaacacc ttttttatga ggctgagtag cagaacctaa aaaagcagag ccatcataag
     2161 aaaatataat ttttattttc atcaatatcg actcaaaatc attttcttaa aacaataagc
     2221 cgaaacaaat aaacttaaag aaaaaattcc aagacaagcc aaaattggag gttgagaaaa
     2281 agaacttaaa agtccaaaat atatagcaat cactccaaac atacctaaat acacatagcc
     2341 tttttcataa cgataagtaa ccaaaccaaa acaaagcgca aaaagcgtac tagcaagtgg
     2401 aaacaaggct atagttgtat aaatcacaaa ttctcttgct ctttgtggat tttcgtttaa
     2461 atcattccag tattcataaa atttctttgt ttgaagattg tctgtattaa actgagtatt
     2521 tactactaaa gtgtcaaatt ctccactaaa aatactttga ccttgctcaa aattatacat
     2581 tttgccttga tttaagctaa aagcaaagct atcatctttt ctttgcacat gcgcttcttt
     2641 ggctatgata agttgttctt tatcatctgc tttatgttta gggcgataca taattatgtt
     2701 ttcatactta tcactatctt gtttttctat aaaaatcatc cagtctaaaa atttttgtcc
     2761 aaattctcct gttttgtagt taaatttcac ttgagtgctt ttatagttta caaagttatc
     2821 ctgaagttca aatactatag gtatcattac caaagctaca acaagcataa aagcactaat
     2881 caagcttgca attttaagga aaaattttgc caaaatcatt ggtgaaaatc ccaaagtaaa
     2941 aagcactatg ctttcatttt ccttagaaag cctaaacaaa gccaaagtta aagaaataaa
     3001 aaaagatata ggcaaggtaa aaattaaaat tctaggcaac ataaacccat aaagctttaa
     3061 aagatccaaa aaactaatct ctatacttga agtaagtttt gcaagttgaa taaaaaacac
     3121 catagataca atagcaaaaa gtacgaaaaa tatagacaaa ttcgtactta aaaattgatt
     3181 taaaacatat cttaaactaa gcttcattag aataatccta agtttttata aaataaaact
     3241 gccacaaaag cgatatttaa aaagggtatc atagcaagtt cttgctcttt tattgcttta
     3301 attctaaaaa aaataaaaaa aggcaaagtc aaaatagaag ctataaataa tactaaaaat
     3361 ccatactcaa aacctaaaat tccacctata caagacataa taataatatc agcatcaccc
     3421 aaattttcta aaatttcatc ttttttttgg aaattcatta gaaaaaaaac caaacttttt
     3481 aataaaaaaa caaatcctcc aaaactaaaa gcatttagta aaaaacctcc actaaactct
     3541 ttaaaaatca aaaaatgtaa aatttcactt tccctaaagg cgtaaaaaaa agcaaataaa
     3601 aaagcactcc aaagtaaaat ttgtggtacg gctttgagtt taatatcaa
//
LOCUS       DAPIWQ010000148         3586 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.150, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000148 DAPIWQ010000000
VERSION     DAPIWQ010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3586)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3586)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3586
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.150"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            18..1394
                     /locus_tag="RJ267_001598"
     CDS             18..1394
                     /locus_tag="RJ267_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDV7389434.1"
                     /translation="MQQEYYDLDLERAILSSCIMSEEAYASIAGDISPKDFSLKAHQD
                     IFKAVIACSNNKEPISVSFLRKHKKIDEQILAEILATPSMIDLPAYVNELREKSVKRQ
                     LLSFAHLLPTRINEDRAVSEIADEIGKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ
                     KTLENKGIIGLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKVLRQKKG
                     VALFSLEMPATQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYD
                     SGYATIADVRAILRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYREQEEK
                     ERENKAKAEGKAYQRLFIPNPMQENAEIIVGKNRNGPVGTIEVVFLKEKSCFVDKPIG
                     YETTEFTG"
     gene            1457..2059
                     /locus_tag="RJ267_001599"
                     /pseudo
     CDS             1457..2059
                     /locus_tag="RJ267_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343994.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2050..2256
                     /locus_tag="RJ267_001600"
     CDS             2050..2256
                     /locus_tag="RJ267_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389435.1"
                     /translation="MGIILGILSLIAGFVAIVLMCGLYFIAFMVFVGIAILIFLSMQP
                     YPYNIIFCAIYLITILALVLWRKT"
     gene            2336..2401
                     /locus_tag="RJ267_001601"
     CDS             2336..2401
                     /locus_tag="RJ267_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001862547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3944 domain-containing protein"
                     /protein_id="HDV7389436.1"
                     /translation="MAYRYDKDLEFLKELSSPELD"
     gene            2563..3063
                     /locus_tag="RJ267_001602"
     CDS             2563..3063
                     /locus_tag="RJ267_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001964913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389437.1"
                     /translation="MSRWWSLYNEILRDVAKKFDVKFDENESTNSIETSLLCKLIEEE
                     LKNSQDENTLRELVNIFELGISNINKQTVVMGLQSLIKIGGFKSYQIAVIVANQVMKV
                     LLGRGLSLAANATLTRALSLFSGPVGWTIMTTWTALDLASPAYRVTIPAVLQIIILRL
                     KHNTKN"
     gene            3082..>3586
                     /locus_tag="RJ267_001603"
     CDS             3082..>3586
                     /locus_tag="RJ267_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389438.1"
                     /translation="MENICQFIIENIDKNSLNTKKIKLVFNMQEQEITTISKIFKVSS
                     EHIIAFYDTSTSFNYFSKTTGICFTGKEVIFKRKEDEVLMKINYEDFKEANKSLPEKT
                     TTLQDIKFPISFHNLGTSYLSFDDFKKKNYIEENDELIINFLHILTSKNNIESFKNES
                     MFPQALEK"
BASE COUNT         1356 a          464 c          626 g         1140 t
ORIGIN      
        1 atttataagg aaaattagtg cagcaagagt attatgactt ggatttagaa cgagctattt
       61 taagcagttg tatcatgagt gaagaagctt atgctagtat agcaggcgat attagcccaa
      121 aagattttag tcttaaagct caccaagata tttttaaagc ggttatagct tgtagcaata
      181 acaaagagcc catttctgta agttttttaa gaaaacataa aaaaatagat gagcaaattt
      241 tagcagaaat tcttgctact ccttctatga tagatttgcc tgcttatgta aatgaacttc
      301 gcgaaaagtc tgtaaaaaga cagctcttga gttttgcgca tcttttgcca actcgtatca
      361 atgaagatcg tgctgtaagt gaaatcgcag atgaaattgg taaagaaatt tttagtatta
      421 caaatcgtgt gaattctagg gatattaaag atgttgatat ggtaatatca gaactttttg
      481 aagaatttaa aaagcaaaaa actttagaaa ataaaggtat tatagggctt gatacaggtt
      541 ttgaaggtct aaataaaatg acaaaaggtt ttaaaggggg tgaacttata ataatcgctg
      601 cgcgtccagg tatgggaaag acaactcttt gtttaaattt cattgataag gttttaagac
      661 aaaaaaaagg cgtggcttta ttttctcttg aaatgcctgc aactcaaatc atgcaaagaa
      721 tgctatcttc taaaacttct attcctttgc aaaaaatttt aactgcagat ttaaacgatg
      781 atgaatggga gcgtttagga gatgcttgca atgattatag tcaaaagaaa ttatatattt
      841 acgatagtgg ttatgcaact attgctgatg taagggctat tttaaggcgt ttaaaatctc
      901 aagatgaaag tataggactt tgtgtgattg actatatagg gcttatgatg agtaattcaa
      961 attttaatga tagacatttg caagttagtg aaatttcaag aggacttaag cttttggcta
     1021 gggagcttga tatgcctatt atcgcacttt cacaacttaa tcgtggctta gagcaaaggg
     1081 caaataagcg tcctttgatg agtgatttgc gagaaagtgg agctatagag caagatgcgg
     1141 atgctatttt gtttgtatat cgcgatgagg tttatagaga acaagaagaa aaagaaagag
     1201 agaataaagc taaagctgaa ggcaaagctt atcaaaggct ttttatacca aatcctatgc
     1261 aagaaaatgc tgaaattatt gttggaaaaa atagaaatgg acctgttgga actatagaag
     1321 ttgtattttt aaaagaaaaa tcttgttttg tagataaacc tataggctat gaaactactg
     1381 aatttacagg ctagctttaa taaaataagt ttttaatatt ttaaagttat tttttacgac
     1441 acaacctgtc gcaagggtgt tttatacttt ctttgttatt ttaaaacaag gagagaaaat
     1501 gttaaaacaa atcgcatttg gtagtatagc tcttacagct acaggatatg gcataaaaaa
     1561 attatacgaa aaattatcca agccagaaag aaaatttgat acacatgcta ttgttccaag
     1621 ctgtaaggat gtaatcaata ccgaagaata caaactcaaa agagagcttg aaatcgaaca
     1681 aaagaaaaat taaattcaag aatttctttg cgaatgcatg gagtgttata gcggcttttc
     1741 aaaatatttt aattctaagg aatttttaga atttgagcaa aattttacct ctaaaaataa
     1801 tcacaaaaca gaatttcttt tgtcgtctta taaagatcaa atgataaaag tgatcgacta
     1861 tgctaaaaaa tttaaatgct tgagtgcttt tttggaaaca caaagcgaaa aaaatgactt
     1921 agcggttgta aaaatgataa gtgaaagtat ggagagaaaa acacagagat tttatctgca
     1981 aacaaaattt caaacttttc ctcagtatat ttttccttct gtgtggagtt ctcctatgtg
     2041 ggataaacaa tgggaataat acttggaatt ttaagcctta tagctggctt tgttgccata
     2101 gtgttgatgt gtggtttgta ttttatagcg tttatggttt ttgttggcat agcgatactt
     2161 atttttcttt ctatgcaacc ttatccttat aatataatat tttgtgctat atatttaatc
     2221 acaattttag cgctagtgct atggcgtaaa acttaaaaat ttcacttccc ccttgactgg
     2281 ggggggggga tttgataaaa tacaaagtta aaaattttaa aaacaaggag aaaatatggc
     2341 ctacagatat gataaagatt tagaattctt aaaagaatta agcagtccag aactcgatta
     2401 gcttgtaaaa attttaaccc atgataaaga cgggaaagtt cgttttactg aagagttaac
     2461 caataatgat ctttataaaa aacattatcc agatcataaa gaatatatcg aactcatttt
     2521 agaagaattt caaaaatttg gaggaaatag tattcttaat atatttcgag gtggtggagt
     2581 ttatataatg aaattctacg cgatgttgca aaaaaatttg atgtaaaatt tgatgaaaat
     2641 gaaagcacaa actccataga aacatcactt ttatgcaaat taatagaaga agagttaaaa
     2701 aattctcaag atgaaaatac attaagagaa cttgtaaata ttttcgaact tggcatttct
     2761 aatattaata aacaaacagt tgtaatggga ttgcaatctc ttattaaaat aggtggattt
     2821 aaaagctatc aaattgcagt aatagttgca aatcaagtta tgaaagtttt actaggaaga
     2881 ggtttatctc ttgcggcaaa tgcaacactt acaagagctt taagtctttt ttctggtccg
     2941 gtaggttgga caattatgac cacatggact gcattggatt tagctagccc agcctatagg
     3001 gttactatac cagcagtact tcaaattata attttaagac taaaacacaa tacaaaaaac
     3061 taaacacaag gaaatgcatt aatggaaaat atttgccaat ttatcataga aaatattgat
     3121 aaaaattcat taaatacaaa aaaaataaaa cttgttttca atatgcaaga gcaagaaatt
     3181 acaacaattt cgaagatatt taaggtatct tcggaacaca ttattgcttt ttatgatacc
     3241 tcaacatcct ttaattattt tagcaaaact accggaatat gttttactgg caaagaagtt
     3301 atctttaaaa gaaaagaaga tgaagtttta atgaaaatca actatgaaga tttcaaagag
     3361 gcaaataaat ccttacctga aaaaacaaca actcttcaag acatcaaatt tcccatatct
     3421 tttcataatc ttggaacatc ttatctttca tttgatgatt tcaaaaagaa aaactacata
     3481 gaagaaaatg atgagcttat aataaatttt ttacacatct taacttcaaa aaataacata
     3541 gaaagtttta aaaatgaaag tatgtttcca caagccttag aaaaaa
//
LOCUS       DAPIWQ010000149         3575 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.151, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000149 DAPIWQ010000000
VERSION     DAPIWQ010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3575
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.151"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            125..1906
                     /locus_tag="RJ267_001604"
     CDS             125..1906
                     /locus_tag="RJ267_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HDV7389439.1"
                     /translation="MERRLFLKGSALGSMVAFFASSNLSAAMLKDKDLLGFKAVSAST
                     QDKVIVPQGYEAKVLISWGDPLFSKAKPYDENKIIDMNAVKNAHLVFGDDNDGMSFFP
                     LSKNRGILAVNNEYINPEIMFNHHGKNLSKEDILYEQASVGVSILEIEKKGDDWTVVL
                     DSKYNRRIDANTKMQVSGAAKKEVLKNEKFVHGTFANCANGQTPWGTYITCEENFDDF
                     FGSLDENLEFNDSLKRYGFNKTSLYGWEKFDERFDLAKNMDEANRFGWIVEINPFDAQ
                     STPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFVSKHKYKKGADTSKI
                     LDEGILYVGQFNGNVGDFKGQGKWIALEYGKNSLNEKNGFKSQAQVLINTRLAASIVG
                     ATPMDRCEWIASHKQSGSKEVFATLTNNKNRQEPNAANPRTKNVYGQILKWMPKNSHK
                     DDDFTWEIFALAGNPDNQQGLYKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KDEYESMGNNCMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTTMFVGIQHPGEGLK
                     GSTFPYGKTPRSSVMMIRKLDGGVIGS"
     gene            complement(1944..2882)
                     /gene="trxB"
                     /locus_tag="RJ267_001605"
     CDS             complement(1944..2882)
                     /gene="trxB"
                     /locus_tag="RJ267_001605"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HDV7389440.1"
                     /translation="MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSS
                     EIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTE
                     LAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKIYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVAGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
     gene            complement(3016..3330)
                     /gene="trxA"
                     /locus_tag="RJ267_001606"
     CDS             complement(3016..3330)
                     /gene="trxA"
                     /locus_tag="RJ267_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HDV7389441.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELSN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
     gene            complement(3387..>3575)
                     /locus_tag="RJ267_001607"
     CDS             complement(3387..>3575)
                     /locus_tag="RJ267_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389442.1"
                     /translation="FIEVKFTQNDYEVSERLDRKKLEKILKTIEFYHLKNGISSDFQI
                     DLICIKNDVIQFCENISF"
BASE COUNT         1252 a          566 c          569 g         1188 t
ORIGIN      
        1 atacctagtg aaaaactagg tataaatttt ttcttcaatt taaatttttc atcaaagttt
       61 ctaaaaagtt tccaaatatt tttatacttc cattgtttta aatttcaata tggggtaaaa
      121 acaaatggaa agaagattgt ttttaaaagg ttcagcttta ggttctatgg tggctttttt
      181 tgcaagttca aatttaagtg ctgctatgct taaggataag gatttgctag gttttaaagc
      241 tgttagtgca agcacacaag ataaagttat agtaccacaa ggttatgaag caaaggtttt
      301 aatttcttgg ggtgatccac tttttagtaa agcaaaacct tatgatgaaa ataaaatcat
      361 cgacatgaat gcagttaaaa atgctcattt ggtttttgga gatgacaatg atggtatgag
      421 tttttttcca ctttcaaaaa acagaggaat tttagccgtt aataatgaat atataaatcc
      481 tgaaatcatg tttaatcatc atggtaaaaa tttaagcaaa gaagatattt tatatgagca
      541 agccagtgtg ggtgtgagta tcttagaaat cgaaaaaaaa ggtgatgatt ggactgtggt
      601 tttagactct aagtataacc gcagaatcga tgcaaacact aaaatgcaag taagtggagc
      661 agctaaaaaa gaagttttaa aaaatgaaaa atttgttcat ggaacttttg caaattgtgc
      721 aaatggacaa acaccttggg gaacttatat cacctgtgaa gaaaattttg atgatttttt
      781 tggaagttta gatgaaaatc tagaatttaa tgactctctt aaacgctatg gatttaacaa
      841 aactagtctt tatggatggg aaaaatttga tgaaagattt gatttagcta aaaatatgga
      901 tgaagccaat cgttttggtt ggatagtgga aatcaatcct tttgatgcac aaagcacacc
      961 tgttaaaaga acttctttag ggcgttttaa acatgaaaat gcagaaatta tcgtagaaaa
     1021 agatggttct gttatagttt atatgggtga tgatgagatg aatgaattta tttataaatt
     1081 tgttagcaaa cataaataca aaaaaggtgc tgatacaagt aaaattttag atgaaggtat
     1141 tttgtatgta ggacagttta acggcaatgt gggagatttt aaaggacagg gaaaatggat
     1201 agctttagaa tatggcaaaa acagcttaaa tgaaaaaaat ggttttaagt ctcaagctca
     1261 agtactcatc aatacgcgtc ttgctgcaag tattgtaggt gcaactccta tggatagatg
     1321 tgaatggata gcaagccata aacaaagtgg ttctaaagaa gtatttgcaa cactaacgaa
     1381 caacaaaaat cgccaagaac ctaatgcagc aaatccaagg actaaaaatg tttatggaca
     1441 aattttaaaa tggatgccaa aaaattctca taaagacgat gattttactt gggaaatttt
     1501 tgctcttgct ggaaatcctg ataaccaaca aggcttatat aaaggctcaa ataatattac
     1561 aagtgaaaat aaatttaatt ctcctgatgg acttaaattt gatagagatg gaagactttg
     1621 gatacaaaca gatggatctt attctaataa agatgaatac gaaagtatgg gaaataactg
     1681 catgctagca gcaaatccaa aaacagggga aattagacgc tttttaacag ggcctattgc
     1741 ttgtgaatta acagggattg cttttagtga ggattatact acaatgtttg taggcataca
     1801 acatccagga gaaggtttga aaggtagtac ttttccttat ggaaaaacac caagatcaag
     1861 tgtaatgatg ataagaaaac ttgatggtgg agtgatagga agctaaataa aaataaagtt
     1921 gcttttagca actttataaa atcttaatgc aagctttcta tataagccat agcacttaat
     1981 gcagctacag ctccatcacc tgcagcacaa ataacttgct taggcgcatc ttttctaagg
     2041 tcccctgcgg caaaaagtcc agcaacgcta gtttgcattt taagatcaac acttacttgc
     2101 ccaccttctt ccatattgca taaaaactta ctatcgtctt gttttaaaat ttcatttctt
     2161 acgttaagac caacaaaagt aaaaattcct ggaacattta aatctctaat actaccatct
     2221 tttaatttta cttttactcc agcaacaccc attttatcgc catatacttc atctacactt
     2281 gcgctagtaa tgagttctat tttttcgttt ttcttaactt tttctactgt agatggagct
     2341 gctctaaact catctctgcg gtggataaga taaatcttag aacaaatatt tgctagatat
     2401 aaagcttctt ctaaagccgt atctccacca cctaaaactg caacttcttt atttttataa
     2461 aaaaatccat cacaagttgc acaagtgctt acaccttttc caaaaaattc atcttcgccc
     2521 ttaaaacctg ctttttttgg agctgagcct gtacaaacta tcacagcttt agcaagttct
     2581 gttttaccac cttctaattt gatggtaaaa cttccatcac tattttttaa aatttgttct
     2641 actccaacca tttcatgttt taaaccaaaa cgcatacatt gttcactcca aggagccata
     2701 aaagaaattc catccataac ttgggctaca cctggataat tttctatctc agaacttgag
     2761 gtaatttgtc caccaggcat acctttttca aacattacta catttttaag gccacctcta
     2821 gttgcataaa gtccggcact aagtccagca ggacctccac ctatgattgc tacatctaac
     2881 atttatattt cctttatatt gaattttatt attaataatg atataaaaat tattcttaat
     2941 agtagttaat aaaaattatt atttagtata aatttgaaat ttttaagaag aaggctagtt
     3001 atactagcct ttagtttata gtaaagagtt taatttatcg ctaattgctt gtttagattg
     3061 tgcaccaacg agttgatcta caacttcacc atttttaaag aaaataagcg taggaataga
     3121 gcgaacacca aattcagctg ctaaatcacc ttgttcatct gtatttactt tgcaaatttt
     3181 agctttacca tcgaagtcat ttgaaagttc atcaataact ggagcaagca ttctacaagg
     3241 tccgcaccat ggagcccaaa aatcaactaa agctacacct tcttttgctt gagcaaaatt
     3301 atcacttgtt aattcaatat attttcccat aatttttcct ttctttaatt tttgtctaat
     3361 tgtattttat ttttttaaat atcagcttaa aaacttatat tttcgcaaaa ttgtatcaca
     3421 tcatttttaa tgcaaatcag atcaatctga aaatccgatg aaattccatt tttaagatga
     3481 taaaattcta tagtttttaa aattttttca agtttttttc tatccaaacg ctcggaaact
     3541 tcataatcat tttgagtaaa tttaacctct ataaa
//
LOCUS       DAPIWQ010000150         3520 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.152, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000150 DAPIWQ010000000
VERSION     DAPIWQ010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3520
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.152"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            75..497
                     /gene="cgb"
                     /locus_tag="RJ267_001608"
     CDS             75..497
                     /gene="cgb"
                     /locus_tag="RJ267_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HDV7389443.1"
                     /translation="MTKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRSFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYGKIAKFYIDIEKKLYDK"
     gene            complement(517..2148)
                     /locus_tag="RJ267_001609"
     CDS             complement(517..2148)
                     /locus_tag="RJ267_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HDV7389444.1"
                     /translation="MPFIMELLKQNKLKLISFLLFSFITSAVGVLTLVFINDYLLKNA
                     QNIPIFYFIVLLLIFFISSTIVELGLSIFGQNFIFKMQRRVVKQILDTPLLRVAKVGK
                     ARILASLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSPQIFALCVVWIMVIFI
                     TNNFLMMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARL
                     KKKNSTLGNLFNNLSNNWTNVTLLALVGVEFYLALKFEWASVADATTIALSILFLRTP
                     LVSMIGSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENF
                     HLNPVNIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKNLDEY
                     RSLISAVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKNKTSVKDNELTLTKLSTGQ
                     KKRLAMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAY
                     FDSADRIFLAQNGEISELKGENIKELAKNLVEKFD"
     gene            complement(2198..3493)
                     /locus_tag="RJ267_001610"
     CDS             complement(2198..3493)
                     /locus_tag="RJ267_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7389445.1"
                     /translation="MRKSKFGTKEIKILGLSSLGGTLEFYDFIIFVFFAEYIANVFFP
                     KDMSEFWALLNTYGAFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFVLA
                     FIPGYETLGFLAPVLLILIRIFQGIAIGGELPGAWVFVREYCQEKQKAFFLSCLNSAM
                     ALGILLGSIVFLIINAFFSIEEIAAYAWRIAFFVGGIFGIISIYLRRFLQETPVFKQM
                     KKESSLSSFPLKDLFKEKDIVKNLFSSMMMTWVLTGCVIVLVLLMPKFMPSILNLSGV
                     EGSYLQILGILGIALGGAFMGYLVDKFGLFKICIFFSLTFVFFSFLYFYALYELKNLV
                     LVCILYSIICFLGGINVFAPILMSEVFRAKIRFSGISFSYNISYAISGGITPQLVFWL
                     NTLASKNENPFLYGMSIYMIFLALLAICAVFIVKDKIKF"
BASE COUNT         1416 a          596 c          403 g         1105 t
ORIGIN      
        1 aattttaaca caagtcaatt tttttctcct ttttaagata taaaatatct cttttacaac
       61 aaaaaggaga aactatgaca aaagaacaaa ttcaaatcat caaagattgt gtgcctattt
      121 tgcaaaaaaa tggagaggat ttaaccaatg agttttataa aataatgttc aatgattatc
      181 ctgaggtaaa acctatgttt aatatggaaa aacaaatttc aggagaacaa ccaaaagctt
      241 tagcaatggc gattttaatg gcggctaaaa atatagaaaa tttggaaaat atgagaagct
      301 ttgttgataa agttgccata actcatgtta atttaggagt taaagaagag cattatccta
      361 tagttggagc ttgcctttta aaggctatta aaaatctttt aaatcctgat gaagccactc
      421 ttaaagcttg ggaagttgct tatggaaaaa ttgctaaatt ttatatcgat atagaaaaaa
      481 agctctatga taaataatat aagcccattt tgggctttaa tcaaattttt ctactaaatt
      541 tttagctaat tcctttatat tctcaccctt taattcgctg atttcaccat tttgagccaa
      601 gaaaattcta tcagcactat caaaatatgc atcatcatgt gtgatagcaa agattgtttt
      661 accttgctct tttagcaaag gtaaaagttt tttataaaaa aatcttctaa aaacaggatc
      721 ttgatcagcc gcccattcat caagcactaa aatatccctt tcttcaagca aggctataag
      781 catagctaaa cgcttttttt gccctgtaga aagtttggtt aaggtcagtt cattatcttt
      841 gacacttgtt ttatttttaa gttctaaaaa ctccaaccaa aaagcaattt tttcttcgct
      901 tgcaaaattt tctttattta aggttttagt aaaaagatga aaatcgctaa aaacagcaga
      961 aataagagat ctatactcat ctaaattttt atcatctata agcgtatcat caacataaat
     1021 tccgcctttg cttggcttaa aaagtcctgt caaaagcata caaaaagtgg atttaccact
     1081 tccattttta cctattaaaa ataccaattc acctttttta agttctatat ttacaggatt
     1141 taaatgaaaa ttttcttcat aagcaaattg agtatttcta aaagaaattt ttttccattc
     1201 actgatataa tgtgtttttt taaaaccttc tatataatca tctaattcca attttgcgat
     1261 cttatccaaa gcgatttttg ccaaaagcaa agtaggaaaa gatcctatca tagatactaa
     1321 aggggttcgt aaaaacaaaa tagaaagagc tatagttgta gcatctgcaa cacttgccca
     1381 ttcaaatttt aaagctaagt aaaactctac acccactaaa gccaaaagag ttacatttgt
     1441 ccagttgttt gagagattgt taaaaagatt acctaaagta ctatttttct ttttcaatct
     1501 tgcattattt tcaaattcat cttcataata aagcttggct ctatcacgat tgatcaaaag
     1561 ttctttatgt ccatctagta tattttggta attattttgc aaagcatcat cattttccct
     1621 tgcctttcta aaatactgat atactttcat catcaaaaaa ttattagtaa taaaaataac
     1681 cataatccat accacacaca aagcaaaaat ttgtggtgaa agataacata aataaacact
     1741 agtgcataaa atcaatatac ttgattgtaa aaaatcaggc aatcttaaaa gcccaaaaga
     1801 tatatttctc acatcacttc ccaaagaagc taaaattcta gccttaccta ctttagcgac
     1861 tcttaacaaa ggggtgtcta agatctgctt tactacgcgc ctttgcattt taaaaataaa
     1921 attttgtcca aaaatactaa gtccaagttc aactatggta gaacttataa aaaaaatcaa
     1981 aagcaaaaca ataaaataaa aaataggaat gttttgtgca tttttaagca aataatcatt
     2041 gataaaaaca agagttaaaa ctccaacagc gcttgtaata aaagaaaaaa gcaaaaaaga
     2101 aatcaacttt aatttatttt gcttaagtaa ttccataata aaaggcattt ataaactcca
     2161 aaatataatt ttaattataa cattttaaga gtgattatca aaattttatt ttatctttta
     2221 ctataaaaac agcacaaata gccaataacg ctaaaaaaat catatatata ctcataccat
     2281 ataaaaatgg attttcattt ttactcgcaa gtgtattaag ccaaaaaacg agttgcggag
     2341 taataccgcc tgaaattgca taagaaatat tataagaaaa agaaattcct gaaaatctta
     2401 ttttagctct aaaaacttca ctcattaaaa taggtgcgaa cacattaatc ccacctaaaa
     2461 aacaaataat cgaatacaaa atacacacca aaaccaaatt tttaagctca tataaagcat
     2521 aaaaatataa aaaagaaaaa aatacaaaag ttaaagaaaa gaaaatgcaa attttaaata
     2581 aaccaaattt atctacaaga taacccataa aagccccgcc taaagctatt cccaaaattc
     2641 ctaatatctg taaataactt ccttcaaccc cacttaaatt taaaatacta ggcataaatt
     2701 taggcatcaa taaaacaagc acaataacac aacctgttaa aacccaagtc atcatcattg
     2761 atgaaaataa attttttaca atatcctttt ctttaaataa atctttaagc ggaaaagaac
     2821 taagcgatga ttcttttttc atttgtttaa aaacaggagt ttcttgcaaa aatctacgca
     2881 aataaataga aataatccca aaaattccac ctacaaaaaa agcaatacgc caagcataag
     2941 cagcaatttc ttctatgcta aaaaaagcat taatgattaa aaatactata cttcctaaca
     3001 aaattcctaa agccatagct gaatttaaac agcttaaaaa gaaagctttt tgtttttctt
     3061 gacaatactc tcttacaaaa acccaagctc caggcaattc tccacctata gctatgcctt
     3121 gaaaaattct tataagtatc aataaaacag gagctaaaaa cccaagagtt tcataacctg
     3181 gaataaaagc taagacaaag gtaggaagaa ccattagtaa aatacttagc ataaacatat
     3241 ttttacgccc aaatttatct ccaaaatgtg ccataactat accacccaaa ggacgtgcta
     3301 aatatccagc tgcaaatgct ccataagtat ttaataaagc ccaaaattca ctcatatctt
     3361 taggaaaaaa tacattggct atatattcag caaaaaagac aaaaataata aaatcataaa
     3421 attctaaagt tcctcctagt gaagaaagtc ctaagatctt aatttccttt gttccaaatt
     3481 ttgattttct cattgattaa ttaccttaaa ttttaaaaac
//
LOCUS       DAPIWQ010000151         3520 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.153, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000151 DAPIWQ010000000
VERSION     DAPIWQ010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3520
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.153"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            5..136
                     /locus_tag="RJ267_001611"
     CDS             5..136
                     /locus_tag="RJ267_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7389446.1"
                     /translation="MSMKKIILFLLCVGFAFACSEHSHTDFKDLNKTEYNSQLKDKI"
     gene            133..1137
                     /locus_tag="RJ267_001612"
     CDS             133..1137
                     /locus_tag="RJ267_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HDV7389447.1"
                     /translation="MKKIFFMFLTAVSFLGASELNIYSARHYNADFEIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIP
                     AHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKNYEDLAKAEFKGEIVMRSATAPYS
                     KTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR
                     "
     gene            1137..2753
                     /locus_tag="RJ267_001613"
     CDS             1137..2753
                     /locus_tag="RJ267_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDV7389448.1"
                     /translation="MYKTLKYYKLGAILLALFLVLPIFGIFAELFYILFQNFNTSDLT
                     QFSSIKENLSHFFDYLFLKFIKDTFIISMGVLCLSLILGVSSAYLIANYDFYFCKILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHENFGFRIDFFNHYGVIFVLAISLYPYIYL
                     FAKTAFKSEAKEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSVLSGILMLFVFLIMYVDYYYKNKHHYSFNQNL
                     ALFIKKRKLNPIKQILSCIYCFMIAFVGFILPFIWLVYWGLKDHKLFESQFYIISFQT
                     IILALITALITTFLAYFLMFSSRIVKNHFFNLFILKISSLGYSIPAAALGISIIVLFV
                     FLDKFFHMSLLGNSLLVLVFAYIIRFLASAIYSLEGGYNKIHLNIDEASLNLRTSYFI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLFIVFLSLMVVVWMDKITRKDDVRN"
     gene            2737..>3520
                     /locus_tag="RJ267_001614"
     CDS             2737..>3520
                     /locus_tag="RJ267_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7389449.1"
                     /translation="MMLEIKNLSKNFGKIQALENINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAKLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHL
                     LKTFEIEDLRYKKIDEISGGQAQRVAFARAMARGCKLLLLDEPFSNLDQNLKQDLRRE
                     LKKMIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKELYFKPDFKSAQIL
                     PDLNIIEEKLDLEDEFFAWIASKNYIFGYAELKIGNRFEAKIL"
BASE COUNT         1181 a          409 c          573 g         1357 t
ORIGIN      
        1 attaatgtct atgaaaaaaa taattttatt tttactatgc gttggctttg cttttgcttg
       61 ctctgaacat tctcataccg attttaaaga tcttaataaa accgagtata attctcaatt
      121 aaaggataaa atatgaaaaa aatcttcttt atgtttttaa cagctgtttc atttttaggt
      181 gctagtgagc ttaatattta ctcagcaaga cattataatg ctgattttga aatcataaaa
      241 aaattcgaag aaaaaacagg tattaaggtc aatcatactc aagctaaagc ttcagaactt
      301 attaaaagac tttctcttga aggaagtaat tctcctgctg atattttcat cacagctgat
      361 atttcaaatc ttacagaagc taagaattta ggacttttat cccctgtttc atcaaaatat
      421 ttagaagaat ttatacccgc tcatttaaga gataaggata aagaatggtt tgcgattaca
      481 aaaagagcaa gaattattgc ttacaacaaa aacacaaata tcgatattag caaaatgaaa
      541 aattatgaag atttagcaaa agctgaattt aaaggagaaa ttgttatgag aagtgctaca
      601 gctccttata gcaaaactct tttagcatct attatagcta atgacggaaa taaagaggct
      661 aaagcatggg ctaaaggtgt gcttgaaaat cttgcgacaa atccaaaggg tggggataga
      721 gatcaagcca gacaagtatt tgcaggcgaa gctaaatttg cagttatgaa tacttattat
      781 atagggcttt taaagaattc taaaaatcca aaagatgtag aagtggggaa ttctttgggt
      841 attatttttc ctaatcaaga caatagagga acgcatatta acattagcgg tattgctatg
      901 acaaaatcaa gtaaaaatca agatgcggct aaaaaattta tggaatttat gttaagtcct
      961 gaaattcaaa aaattcttac tgatagtaat tatgaatttc ctataagaaa tgatgtagaa
     1021 ttaagccaaa cggtaaaaga ttttggaact ttcaaagaag atcaaatccc tgtgagtaag
     1081 atagcagaaa atattaaaga agctgttaaa atttacgatg aagtcggttt tagataatgt
     1141 ataaaaccct aaaatactat aaactcgggg caattttact tgcccttttt cttgttttgc
     1201 ctatttttgg tatttttgct gaactttttt atattttatt tcaaaatttt aatacaagtg
     1261 atttaaccca attttcatct attaaagaaa atttgagtca tttttttgat tatttatttt
     1321 taaaattcat caaagatact tttataatta gcatgggagt attgtgttta agcttgattt
     1381 tgggtgtgag ttctgcttat ttgattgcaa attatgattt ttatttctgt aaaattttag
     1441 aaaaattact cattttaccc ttagccatac ctgcttatat tttagccttt gtttatgtgg
     1501 gaattatgga ttttcaagga ttttttcacg aaaattttgg ctttaggata gattttttca
     1561 atcattatgg tgttattttt gttttggcta tttctttata tccttatatt tatttatttg
     1621 ctaaaacagc ttttaaaagt gaagctaaag aggcttatga agtagctaaa atcatgaaat
     1681 attctgaatt tagaattttt acacgcgtgg cacttttgag tgcaagacct gccatttttt
     1741 ctggagcttt attggtttta atggaaactt tgagtgatta tggtgcaagt gcttatttgg
     1801 gagtggatac tttttcggct ggaattttta aactctggta tgatttgaat gattcttatt
     1861 cttctagtgt tttatcgggt attttaatgc tttttgtatt tttgattatg tatgtggatt
     1921 attattataa aaataaacat cattatagtt ttaatcaaaa tttagctctt tttatcaaaa
     1981 aaagaaaatt aaatcctatt aaacaaattc tatcctgtat ttattgtttt atgattgctt
     2041 ttgtaggttt tattttacct tttatttggc tagtttattg ggggctaaaa gatcataagc
     2101 tttttgaatc gcaattttat attatcagtt ttcaaactat aatcttagct ttaatcactg
     2161 ctttaattac cactttttta gcttattttt tgatgtttag ctctaggata gttaaaaatc
     2221 atttttttaa tttatttatt ttaaaaataa gttctttggg ttattctata cctgctgctg
     2281 ctttagggat tagcattata gtgctttttg tatttttgga taaatttttt cacatgagtt
     2341 tattgggaaa ttctttactt gttcttgttt ttgcttatat aattcgtttt ttagcgagtg
     2401 caatttattc tttagaggga ggatataata aaattcatct aaatattgat gaagcaagtt
     2461 taaatttaag aacgagttat tttattttat tttttaaaat tcacacacct ttaatgaaac
     2521 attttttatt tttggctttt attattgttt ttattgatac gattaaagaa cttcctttaa
     2581 gtagaatttt agcgcctttt ggctttgaaa ctttaagtgt taaagctttc tggtttgcaa
     2641 gtgatgaaag aatttatgat gcagctttgc cttccttgtt tatcgttttt ctttctttaa
     2701 tggttgttgt ttggatggat aaaatcacaa ggaaagatga tgttagaaat taaaaattta
     2761 tctaaaaatt ttggaaaaat acaagcttta gaaaatatca atcttcatgt caaagaagga
     2821 gaatttttaa gcattttagg aggtagtgga agcggaaaaa gcacgctttt aaggattatt
     2881 gctaagcttg aacaagctag ttcttatgat ttgttttctt gcaaaggtga agtggctttg
     2941 atgtttcaaa attatgcttt atttcctcat ttaaatgttg agaaaaacat actttttgca
     3001 ctttatgata aaaaagataa aaatcaaatt ttaaatcatt tgcttaaaac ttttgaaatt
     3061 gaagatttaa gatataaaaa aatcgatgaa atttcaggag gacaagcgca aagagtggct
     3121 tttgctagag ctatggcaag aggatgtaag cttttgcttt tagatgaacc tttttctaat
     3181 ttggatcaaa atttaaaaca ggatttaaga agagaattga aaaaaatgat agaaaatcaa
     3241 ggcattacgg ctattatggt aactcatgat attgaagatg cttattgtat gtctgatcaa
     3301 atcgcttttt tagaaaaagg aaaaatttta gctcatgcaa atcctaaaga gctttatttt
     3361 aaacctgatt ttaaaagtgc acaaatttta cctgatttaa atatcataga agaaaaactt
     3421 gatttagaag atgaattttt tgcttggata gcttcaaaaa attatatttt tggttatgca
     3481 gagcttaaaa taggaaatcg ctttgaggct aaaattttac
//
LOCUS       DAPIWQ010000152         3510 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.154, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000152 DAPIWQ010000000
VERSION     DAPIWQ010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3510)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3510)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3510
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.154"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(104..3468)
                     /locus_tag="RJ267_001615"
                     /pseudo
     CDS             complement(104..3468)
                     /locus_tag="RJ267_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345045.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1079 a          669 c          456 g         1306 t
ORIGIN      
        1 atacaataaa aacatccatc ctaataattt taaaattatc aggatgaaat ttttaacaag
       61 taggagagta aactaattaa actaagtatt atcttttata agattaccaa agataattaa
      121 actgagcaaa tcctgtatgg gtattgccat ctttatcaaa cattccatta tagcttaaac
      181 taaaatagaa agcttcatta acaggaacga taaaagaagt gcttacaaat ttttgtactc
      241 ttggtaaatc aaactcatca cttactttta tattaccaaa tctagcctca gcttctactt
      301 taggattgat attaaactta gctccaagtt ctactgaagt ttttaaatta ggcaaccaat
      361 ctctaaacca agtaagactt gttttagtag agaaaagatt taaatagttt gcataggttc
      421 tttctccacc tttaactgtt gcttgtccta tggtgtcttt catagaaaaa gcttcagtat
      481 aacctccttc ataagcaaga cctatttcag gagagaatat atctttatta gaaataaaat
      541 tcatacctaa ggctgtattg actccataag cataagaatt aggttcagct ttagcttcat
      601 tatttcctat ttttttagtt aaatcatttt taatcaaagc agctttacct tgagctttga
      661 tataaacttc ttgacctttt tctgtagtaa ataaggtatt aaagtatttt aaacctgcat
      721 aataggttct attattaata tcaaaataag ttgaacccat ttttctatct tcataacctg
      781 catacacacc atatattcca ctgtctttta aagtagaata acctataatg gttcctttag
      841 cgtgtccttt actttcttca tttaaagaaa gttcaacatt ctgtgaagaa gtataaggaa
      901 ggatgaataa agaatgttct ttattagaac catagcttcc attatttaaa tcactcttta
      961 tataatcact tgcatctgca tataaattac ccttttcaga catagcaatg ctttgagatt
     1021 tacttgaaga agctaaagca aagctttgca tagaattacc cataacatta tctataaagg
     1081 ttgatcttct tgaagtagta gagattaaag atctaaaggt tgcacctgat atggaagcat
     1141 taagattaaa atctgtagta agctttcctg ttattggatc aaagcttaaa gatatttctc
     1201 cacctccatt ggttcctata ttgccaatat tgccttgatt aacacctgag atgatatgat
     1261 tgatattgtc taattcatca agatcaacat tgctttgatc tacggtgatg ttttctactt
     1321 ttacattatc tttaccactt ccacctataa ccacagtgtt taatttacct gtgtttttat
     1381 ctgtagaaac aagccaatct ttgattccaa cactaccact accattgtta gttactgtat
     1441 taccattttc atctttacct actgagcctt gattggagat ttcaacttgt gctgatcctg
     1501 aaacagtgat gccgttattt atggttgagc cctgtgaatt ggaaatacta gtgcttccac
     1561 ttcctgaaga actaataccg ccactaatag ttccaccatt actattgcta atcaccatat
     1621 cagcactacc tgtactttca atcttaccac cgatattacc tgaattagaa atttcaagtt
     1681 tattatcact attgttagta atagaaccac ttatacctgt agatgatgta gaagtgttag
     1741 tgatagaatc aagtttacta tttttatcta cagtaattga accagaaata gctccattac
     1801 cctcattggt aatggaatca atactactac caccacttac ttgaacactt cctgagatac
     1861 ttccattacc ttgattaaca agaccacctt ctaccttagc tccaccttct atcttgatat
     1921 cactacctat agaagcatta cctgtattga ttatatttcc ttcaagttta gtgtttttcc
     1981 cactaacagt aataccacct gttatacttc ctgagccaga gttagctatg gctcgattcg
     2041 aagtagctgt aacagttgct ccatctttta tggttataga gccttctatt tttccacttc
     2101 gattcaatat accaacacct cttccacctt ctaccctaga accttcgcca gataaaatca
     2161 tttctccact taaagaggcc gagtttatca atcttatacc atcgatctta ccttttataa
     2221 tgccgccatt tttaagttct attttttgag tttgtgagtt attctctaat aaaattccat
     2281 gttcctcact ataaattcca cttactgtgc cattatttga acgtccatct atatataaat
     2341 ctcctagagt ttgcgatcga cccactccta ttgccgtgta ttttgcataa acttgacctc
     2401 catcttttat agtaagtgtt ccaaatactc cataagctga acctatacca acattattac
     2461 tacttatggt tccagtattg attatatgct ctataaaacc accatattct aataatatac
     2521 tagaacccca ttctccttca gcatgtataa ttcctgtatt ttcaacagtt tttatatgct
     2581 gagatgttac cattatagca gaatgtcctc cttttattgt gccattgtta acaagctttt
     2641 ctatggtagc attgctactt atccatatac cattattcca ttgtccacta ccaggggaat
     2701 taataaaacc attattagta aaagtatcta tttttgtatt tatagccact cccacttctg
     2761 agccttgtat agttccgttg ttattaaaat tttttatggt tcctatgttg cctatatcta
     2821 cacccttatt tgcactaata aaaccactgt tattaaaggt ttgtatgttg gtattctttc
     2881 cttcaaaaaa actcctttat tgttgtcaat tatggttcca ctattgtcaa atttatctat
     2941 attaagagtt cctgagttgt taccccaaat tcccatgtaa atttgtccat taatttgacc
     3001 tgtattttca aaggtgttga cagcaatagt tcctgtaaaa ttaccattgt tttctatacc
     3061 aatcttacca ttaatagttc tattattagt aagatttgca agagtaagag tgttgctacc
     3121 attagcatgg gcatagatga ttttacctgt attgcctatg ctacctagag ttccacttga
     3181 tccgattgtt aaagaatttg atgttccatt tccagtaata gttacttgtt gattgtgtaa
     3241 agaatttata gtcgtattga tcttagcttg agggctataa acacttgctg atctagtttt
     3301 aacattttta ttaacttcat cataagtttt tatttcagaa tttaatttag cattagcaca
     3361 acttgccaaa aaagaaatag tagctaaaga taaaactatc tttttagaat ttaaacaggg
     3421 ttctttgccc tctcctatag gtattttagt taatgtgata tttttcataa gattttcctc
     3481 cctttataat ttgttctata tattatattt
//
LOCUS       DAPIWQ010000153         3448 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.155, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000153 DAPIWQ010000000
VERSION     DAPIWQ010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3448)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3448)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3448
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.155"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..489
                     /locus_tag="RJ267_001616"
     CDS             <1..489
                     /locus_tag="RJ267_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDV7389450.1"
                     /translation="EWNYYSVFREWHYKDIEPRVFAEELLLGENKKPADTYKFHIFDK
                     ENLSNNFIQVTTDRFDNYQRAMFDLSWNLAPFNFMYDNKNVTMIPKKPNLLDSMINIS
                     LILAKPFDYVRVDLYQFDKKIYIGELTFTHGAAGEKVIPKEWDKKLGDLWRLKRLDNA
                     SK"
     gene            476..1579
                     /locus_tag="RJ267_001617"
     CDS             476..1579
                     /locus_tag="RJ267_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate aminotransferase family
                     protein"
                     /protein_id="HDV7389451.1"
                     /translation="MQANKNIQKLTPYLSIPHKIWNSSQSNILKLDWNEATIPPSPYV
                     IESIKKFLVNGNLNWYPNTKNLYLLDKIAEYTKQINSSFVELFEGSDSAHECIIDVFL
                     DKCDKIGIVSPTYDNFRSRANGVGIETISFTLDDNFNLDFDSLEYFIHEKRIKLLYLC
                     NPNNPTGKSYNIQKIKSLIINNPNVMFIIDEAYYEFTSQSVCDLVEQCNNLIITRTFS
                     KAFALASFRIGYIISHPENIESINKLRNPKSVPMLSQIAANAALEDLQYMRDYVDEVS
                     CARMEFVKFLNTLTTGGGGIFNDSVANFVLIQNENISLFVGFLEKEGIFIRNYSHLIS
                     KNCRISIGTRNQMSYVAEKIQEFAKKQGGFHLV"
     gene            1629..2801
                     /locus_tag="RJ267_001618"
     CDS             1629..2801
                     /locus_tag="RJ267_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate aminotransferase family
                     protein"
                     /protein_id="HDV7389452.1"
                     /translation="MLIKLNDYEKNITQKIKDLKNASGSHSPSIFTMAEQIPELNIKI
                     DSCFLSNPYATALFLRYLKEELIDGQKLRSVLEFYPSQNSIIAKTVADFIGIDPKNVF
                     IGNGAIEIIQAVMHNFVGKKIIVNIPTFSSYYEFAKSETNVVYYQLSKEDNYNLNIEH
                     YLNFVKNENPDSVVLINPNNPDGGYINYEKLRYILSELKYVKNIIIDESFIHFAYENK
                     DYNGINIEYLFKEFHNTIIIKSMSKDFGVAGIRIGYAIMSEDKIRGLLKNGYLWNSSG
                     LSEYFLRLYVRKNFFDEYDKVRREYIQETQTFFRKLSGIKQFKVYPSMANFALVELLD
                     GSSSTDFVAKMLIKYGIYMRTCNDKIGLEGEFIRIASRTLEENDMVLKSICDVFKE"
     gene            2805..3440
                     /locus_tag="RJ267_001619"
     CDS             2805..3440
                     /locus_tag="RJ267_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IB family hydrolase"
                     /protein_id="HDV7389453.1"
                     /translation="MSKEILALFDFCETLTNFQTLDRYLPLAGSKNINYTQSKNLARR
                     ERFQRENLPYPRYEWLIDLDVDLAEEIAQEFVYTDVMANLNQNVMDRLFWHQDEGHTI
                     VIVSGGLTIYIKEFARIYNIENIVAVDLEIYKNKLTGNIDGIHTMQERKLYKLAQKFN
                     LKQFDLKNSYAYSDCVSDIPLLSLVGNPNVIECGKDLQWARILGFNILLKY"
BASE COUNT         1248 a          350 c          597 g         1253 t
ORIGIN      
        1 gaatggaatt attatagtgt atttagagaa tggcattata aggatataga gcctagagtc
       61 tttgcagaag aattattgtt gggagaaaat aagaaaccag cagatacata taaatttcat
      121 atttttgaca aagaaaattt atctaacaat tttatacaag ttacaacaga cagatttgat
      181 aattatcaaa gggctatgtt tgatttatca tggaatttag caccttttaa ttttatgtat
      241 gataataaaa atgttacaat gattcctaaa aaacctaatc ttttggattc tatgataaat
      301 atttctttga ttcttgcaaa accttttgat tatgttagag tcgatttata tcagtttgat
      361 aagaaaattt atattgggga attaactttt actcatggtg cagctggtga aaaagttatt
      421 cctaaagagt gggataagaa attgggggat ttgtggcgtt tgaaaaggtt ggataatgca
      481 agcaaataaa aatattcaaa aacttactcc ttatttatct attccacaca aaatatggaa
      541 ttcgagtcaa tcaaatattt tgaaacttga ttggaatgag gctacgattc cgccatctcc
      601 ttatgttata gaaagcatta aaaaattttt agttaatgga aatttaaact ggtatccgaa
      661 tacaaaaaat ttatatttat tggataaaat agcagaatat accaaacaga taaatagttc
      721 ttttgttgag ttgtttgaag gatccgattc tgctcatgaa tgcatcatcg atgtgttttt
      781 agataaatgt gataaaatcg gaattgtttc ccctacttat gataatttta gatctagagc
      841 taatggggta ggtattgaaa ctatttcatt tacacttgat gataatttta atttagattt
      901 tgatagttta gaatatttta tacatgaaaa gagaataaaa cttttatatt tatgtaatcc
      961 gaataatcca accgggaaat cttataatat tcaaaaaatt aagtctctaa ttattaataa
     1021 tcctaatgta atgtttatta ttgatgaagc ctattatgaa tttactagcc agagtgtatg
     1081 tgatttggtt gaacaatgta ataatttaat tataactcga acattttcta aggcttttgc
     1141 attggcgagt tttaggatag gatatataat ttcacatcca gaaaatatag aatcaataaa
     1201 taaattaaga aatccaaaaa gtgttcctat gctatctcaa attgcagcta atgcagcatt
     1261 ggaggattta caatatatga gagattatgt agatgaagtg agttgtgcta ggatggaatt
     1321 tgtgaaattt ttgaatacct taactactgg cggggggggg atattcaatg attctgtagc
     1381 aaatttcgtt ttgattcaaa atgagaatat atctcttttt gtagggtttt tggaaaaaga
     1441 gggtattttt attcgcaact attctcatct tatttctaaa aattgtcgta ttagtatagg
     1501 tacaagaaat caaatgagtt atgttgctga aaaaatacaa gaatttgcta aaaaacaagg
     1561 aggttttcac cttgtttgat gcaattatag taagaattat ttttactttt gtattcttca
     1621 aggatttgat gttgataaaa cttaatgatt atgaaaaaaa tattacgcaa aagataaaag
     1681 atttgaaaaa tgcttctggt agtcatagtc cgagtatttt taccatggct gagcaaatac
     1741 cggaattaaa tataaaaatt gattcttgtt ttttatctaa tccctatgcg acagctcttt
     1801 ttttaagata tttaaaagag gagttaatag atggtcaaaa actaaggtca gttttggaat
     1861 tttatccttc tcaaaatagt ataattgcca aaactgttgc agattttata ggaattgatc
     1921 ctaaaaatgt ttttattgga aatggtgcta tagagattat tcaagctgta atgcataatt
     1981 ttgtaggtaa aaagatcatt gttaatattc ctactttttc atcttattat gaatttgcta
     2041 agtctgaaac aaatgttgtt tattatcaac tttctaaaga agataattat aacttgaata
     2101 tagaacacta tcttaacttt gttaaaaatg aaaatccaga tagtgtagtt ttaataaatc
     2161 ctaataatcc ggatggagga tatattaact atgagaaatt aagatacatt ttaagtgaat
     2221 tgaaatatgt taaaaatatt attattgatg agtcctttat tcattttgct tatgaaaata
     2281 aggattataa tgggattaat attgagtatc tttttaaaga atttcataat actattatta
     2341 tcaaaagtat gtctaaagat tttggcgtag cagggattag aataggttat gcaattatgt
     2401 cagaagataa gataagaggt ttattgaaaa atggatattt gtggaattct tcgggactta
     2461 gtgaatattt tttaagatta tatgtaagaa aaaacttttt tgatgaatat gacaaggtta
     2521 gaagggaata tatacaagaa actcagactt tttttagaaa gttaagtgga attaaacaat
     2581 ttaaggttta tcctagtatg gctaattttg ctcttgtgga gcttttggat ggtagttcta
     2641 gtacagattt tgttgctaaa atgctgatta aatatggtat ttatatgaga acttgcaatg
     2701 ataagatagg tttagaagga gaatttatta gaattgcaag tcgaacttta gaggagaatg
     2761 atatggtatt aaaatcaatt tgtgatgttt ttaaggaata aaatatgtct aaggaaattt
     2821 tggccttatt tgatttttgt gaaactttaa ctaattttca aacgcttgat agatatttgc
     2881 ctttagctgg atctaaaaat attaattata cgcaaagtaa aaatttagca agaagagaaa
     2941 ggtttcaaag agaaaacctt ccttatcctc gttatgaatg gttaattgat ctcgatgttg
     3001 atttggcaga agaaattgct caagagtttg tttatactga tgtgatggca aatcttaatc
     3061 aaaatgttat ggatagactt ttttggcatc aagatgaagg ccacacaatc gttatagtat
     3121 caggtggtct tacgatttat attaaagaat ttgctagaat ttataatatt gagaatattg
     3181 tggccgtaga tcttgaaatt tataagaata aattaactgg aaatatagat ggaattcata
     3241 ccatgcaaga aagaaaactt tacaaattag ctcaaaaatt taacttaaaa caatttgatt
     3301 taaaaaattc ttatgcgtat agtgattgtg taagcgatat acctttatta tcattagttg
     3361 gaaatccaaa tgttattgaa tgtggtaaag atttacaatg ggctagaatt ttaggtttta
     3421 atattttgtt gaagtattaa attataaa
//
LOCUS       DAPIWQ010000154         3442 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.156, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000154 DAPIWQ010000000
VERSION     DAPIWQ010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3442)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3442)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3442
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.156"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..343
                     /locus_tag="RJ267_001620"
     CDS             <1..343
                     /locus_tag="RJ267_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HDV7389454.1"
                     /translation="FSKKILLLDALGELVNFYAISDVVVLGGSFIEGIGGHNPIEAAY
                     FDNVLISGKFIHNQKVLFEEVENVYFCEKLKDLNDKVHYLNLKAKISKKENLDLIIQT
                     IQKGIDARKSL"
     gene            324..1076
                     /locus_tag="RJ267_001621"
     CDS             324..1076
                     /locus_tag="RJ267_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDV7389455.1"
                     /translation="MQEKAYKLLALQEKISNREAKDLIDKGCVFSYGKKVVVARALMS
                     DKARFNVIKAKNPQIIFEDDKIIAINKPYAYVSEDLEKKFNAKLLNRLDKETSGVILL
                     CKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKVKGGALSKVSKDG
                     LSALSIITPIMMQSKKTLAKIVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISSDRMYL
                     HSYEIKIFNYHFRANLDSGFAKFGFDIKNLDF"
     gene            1144..2481
                     /gene="ffh"
                     /locus_tag="RJ267_001622"
     CDS             1144..2481
                     /gene="ffh"
                     /locus_tag="RJ267_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HDV7389456.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHK
                     VTKELLTLIEEDAKQNGIGQKQFLNAIKINLENILSVNGKNQGFVFASKPPTVVLMAG
                     LQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEK
                     DPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMDELRAVKDVLNPDEIFYVADAM
                     SGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADL
                     EVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLNQMESI
                     KKLGSMKSLIGMIPGLGGMANAVKDIDLDNSKEIIRIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESLTQMMSQARRQF"
     gene            2546..2773
                     /gene="rpsP"
                     /locus_tag="RJ267_001623"
     CDS             2546..2773
                     /gene="rpsP"
                     /locus_tag="RJ267_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HDV7389457.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVIKVDAERLAYWKSVGAKLSDKVASITSK"
     gene            2776..3018
                     /locus_tag="RJ267_001624"
     CDS             2776..3018
                     /locus_tag="RJ267_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HDV7389458.1"
                     /translation="MVENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTG
                     KLIGKNGKMINAIKTVISAYKSKDASSYRVTVKALE"
     gene            3011..>3442
                     /gene="rimM"
                     /locus_tag="RJ267_001625"
     CDS             3011..>3442
                     /gene="rimM"
                     /locus_tag="RJ267_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA processing protein RimM"
                     /protein_id="HDV7389459.1"
                     /translation="MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKN
                     TKEMLKIKHYNANNSTVLFENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFD
                     ILECEVFEEDKRLGKVVDILETGASYLFEIQSDEKWVEKKYP"
BASE COUNT         1286 a          360 c          682 g         1114 t
ORIGIN      
        1 attttctaaa aaaattttgc ttttagatgc tttaggggag cttgtaaatt tttatgcaat
       61 ttctgatgtt gttgtgcttg gaggttcttt catagaaggc ataggaggac acaatcctat
      121 agaagcggca tattttgaca atgtattaat cagtgggaaa tttattcaca atcaaaaggt
      181 tttgtttgaa gaagtggaaa atgtatattt ttgtgaaaaa ttaaaggatt taaatgataa
      241 agttcattat ttaaatttaa aagctaaaat ttccaaaaaa gaaaatttag atcttatcat
      301 acaaactata caaaagggaa ttgatgcaag aaaaagctta taaactctta gctttgcaag
      361 aaaaaatttc aaatcgtgaa gctaaagatt tgattgataa gggttgtgtt ttttcatatg
      421 gaaaaaaagt tgtggttgct agagctttga tgagcgataa ggcaagattt aatgtgataa
      481 aagctaaaaa tcctcaaatt atttttgaag atgataagat tattgctatt aataaacctt
      541 atgcttatgt gagtgaagat ttagagaaaa aatttaatgc caagctttta aatcgtttag
      601 acaaagaaac aagtggtgtg attttgcttt gtaaagatga agattttaga aagctttgta
      661 tagaagaatt taaaaaacac agggtttata aaagttatat tgcggtttta gatggggttt
      721 tggctgaaga ggttgaagtg aatgaaccta tttttactat aaaagtaaaa ggcggggcgt
      781 taagtaaagt ttcaaaagat ggtttaagtg ccttaagtat cattactcct atcatgatgc
      841 agtcaaaaaa aaccttagca aaaatagtta ttcaaacagg tagaactcat caaatcagag
      901 tgcatgctaa atttataaaa catggcgttg taggtgatga aaaatatgct aaaatttcaa
      961 gcgatagaat gtatttgcat agctatgaaa ttaaaatttt taattatcat tttagggcta
     1021 atttagatag tggttttgca aaatttggct ttgatataaa aaatttagat ttttaaagcc
     1081 atttaagaaa aaattttgta taatgcaagg tttaatttaa aaattttata gaaaggtgat
     1141 aaagtgtttg agttagtcag cgaatctttt aaatcagcga ttaataaatt acgttttgtt
     1201 gatgatgaaa aagcacttaa gaacgcttta gaaaccttaa aaaaagctct tttaaaagca
     1261 gatgttcacc ataaggtaac taaagagctt ttgactttga tagaagaaga tgcaaagcaa
     1321 aacggaatag gtcaaaaaca atttttaaat gccattaaaa taaatttaga aaatatttta
     1381 agtgtcaatg gcaaaaatca aggttttgtt tttgcttcta aacccccaac agtagttcta
     1441 atggcaggtt tgcaaggggg cggtaagact acaagcacta tcaaacttgc aaattattta
     1501 aaattacgca ataaaaaagt tttagttgca gcttgtgatt tacagcgttt agcggcagtg
     1561 gagcagctaa gacaactttg tgaagctaat gaaattgaac ttttcttcat agaaaatgaa
     1621 aaagatccta ttagggttgc taaagaggct ttaaaaaagg ctgaaagttc tatggtggat
     1681 gttttgcttg tggatactgc tggacgtttg gctatagatg aagctttgat ggatgagtta
     1741 agagcagtta aggatgtctt aaatcctgat gagatttttt atgttgctga tgcaatgagt
     1801 ggtcaagatg gggttaagac tgctgctagt tttaatgaag ttttaggtat cagtggggta
     1861 attttatcaa aatttgatgc agatactaaa ggtggagtag ccttaggtat agcaaaacaa
     1921 atcggtattc ctttaagatt tattggtgtg ggtgaaaaag tagcagattt agaagttttt
     1981 ataccagatc gtatagtaag tcgtattatg ggtgagggtg atttggcaac tttagctgaa
     2041 aaaactgctg cgattattga tgaaaaagag gctaaaaaac tcaatcaaaa aattaaaaaa
     2101 ggtgaattta attttaatga ttttcttaac caaatggaaa gtattaaaaa attaggaagt
     2161 atgaagtctt taatcggtat gataccagga cttggtggaa tggcaaatgc ggtaaaagat
     2221 atagatttgg ataattctaa agaaatcata cgcattaaag caatgatttc ttcaatgact
     2281 ccaaaagaaa gagaaaatcc tgatttatta aataatgcta gaaagcgtcg tatagcagag
     2341 ggagcaggtc tttctcaggt agaagtcaat cgttttttaa aacaatttag caatgcagca
     2401 aaacttgcaa aaagattttc aggtaaaaaa ggaatggaga gtttgacaca aatgatgagt
     2461 caagctagaa gacagtttta aattttattt ataaatactt tttatagtat ctataaataa
     2521 aatttttaat ttttaaggag tgtaaatgac agttattaga cttacaagaa tgggtagaac
     2581 caaaagacca ttttatcgta ttgtagttac ggacagtaga aaacgtcgtg atggtggttg
     2641 gatagaaagt attgggtatt ataatcctat ggtagaacct gaagtaatta aagttgatgc
     2701 agagcgttta gcttattgga aaagcgttgg tgcaaaactt agcgataaag ttgcttctat
     2761 cactagcaaa taatcatggt agagaatttt cttagagaat acgcaaaatt aattgcagat
     2821 tatcctgaac agattgatac tcaaaaaatt gaattaagtg aaaatttttt tgagattgtt
     2881 ctttttgcac ataaggttga tacaggtaag cttataggta aaaatggaaa aatgatcaat
     2941 gctataaaaa ccgtaatctc tgcttataag agcaaggatg caagttctta tagagtaacg
     3001 gtaaaagcac ttgagtgaaa aagattttgt tcaagttgca aaacttggta aaactgtggg
     3061 tcttaagggt tatgtaaaat tgcataacct gagcgacttt tcttctcaat ttaaaaaaga
     3121 tgctactttt tttataaaaa acaccaaaga aatgttaaag attaagcatt ataatgcaaa
     3181 caattctact gttttatttg aaaattatga agatatagaa aaggccaaag aattaactaa
     3241 tcttattctt tttcagagta tcgagaaaag cagacaaact tgtaaattaa aaaaagatga
     3301 gtttttttat tttgatattt tagagtgtga agtttttgaa gaagataaaa gattaggtaa
     3361 agtggttgat atcttggaaa ctggagcttc ttatttattt gaaattcaaa gtgatgaaaa
     3421 atgggttgaa aaaaaatatc ct
//
LOCUS       DAPIWQ010000155         3279 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.157, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000155 DAPIWQ010000000
VERSION     DAPIWQ010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3279)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3279)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3279
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.157"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            47..1078
                     /gene="pseI"
                     /locus_tag="RJ267_001626"
     CDS             47..1078
                     /gene="pseI"
                     /locus_tag="RJ267_001626"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HDV7389460.1"
                     /translation="MQIGNFNTDKKVFIIAELSANHAGSLEMALQSIKAAKKAGADAI
                     KIQTYTPDSMTLNSNKEDFIIKGGLWDKRKLYKLYESAKTPYEWHSQIFETAQNEGIL
                     CFSSPFAKEDLEFLKRFDPIAYKIASFEANDENFVRLIAKEKKPTIVSTGIATEEELF
                     KICEIFKEEKNPDLIFLKCTSAYPTAIEDMNLKGIASLKEKFNVEVGLSDHSFGFLAP
                     VMAVALGARVIEKHFMLDKSIESEDSKFSLDFDEFKAMIDAVRQAESALGDGKLDLDE
                     KALKNRVFARSLYASKDIKKGEMFSEENVKSVRPSFGLHPKFYQELLGKKATKDIEFG
                     DALKQGDFT"
     gene            1075..2046
                     /gene="legB"
                     /locus_tag="RJ267_001627"
     CDS             1075..2046
                     /gene="legB"
                     /locus_tag="RJ267_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,6-dehydratase LegB"
                     /protein_id="HDV7389461.1"
                     /translation="MKNILVTGADGFIGSHLCESLVKKGFKVRALSQYNSFNFWGHLE
                     KSPFLKDMEVVSGDLRDSFFCEKITKNIDAIFHLGALIAIPYSYTAPQSYVDTNVNGT
                     LNMLEAAKKNEISHFIHTSTSEVYGTAFYVPIDEKHPLQPQSPYSASKIAADMMALSY
                     YNSFNLNVNIARPFNTYGPRQSARAIIPTIITQILSGAKEIKLGDLSPKRDLNFVLDT
                     CEGFISLLNLKHFGEVYNIGSGVEYSMQEVLNLIQKILDSKVKIIQDEQRLRPKNSEV
                     FRLCCDANKLKKATNWQSKISLEEGLRQSIEYFKENLENYKSELYNV"
     gene            2039..3193
                     /gene="legC"
                     /locus_tag="RJ267_001628"
     CDS             2039..3193
                     /gene="legC"
                     /locus_tag="RJ267_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase LegC"
                     /protein_id="HDV7389462.1"
                     /translation="MFEKEISFIKSLFNKENIALHEPCFIGNEKKYLLECIDSGFVSS
                     VGEFVTRFEEALKEKTKARFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AIAYTGAKPVFLDIDENTLSLSPKALEHFLENQTYQKDNLSYNKTTHKPIKACVIMHT
                     FGLSAHIKAIKELCEKYHILLIEDAAEALGSTYENKALGTFGKCGILSFNGNKIITGG
                     CGGAILSDDENLAKLARHLSTTAKIPHPYEYDHDRIAYNYRLCNINAAILLAGLENLE
                     LFLENKRELAKIYKDFFKNHDKCKFIDEKSNEKSNFWLNTLLFKDENLRNIFLEECLK
                     NNIFVRPVWKSLPSLKAFQNCQSNELINTKKLEKRLINLPSSVRIANKKE"
BASE COUNT         1220 a          510 c          585 g          964 t
ORIGIN      
        1 aattatatat cattttagtc aggaaattta ccaaagaaag aaaagtatgc aaataggaaa
       61 ttttaacacc gataaaaagg tttttatcat agcagaactt agtgcaaatc acgcaggaag
      121 tcttgagatg gcacttcaaa gtataaaagc tgccaaaaaa gcaggtgctg atgcgataaa
      181 aattcaaact tacactccag atagcatgac tctaaatagc aacaaagaag attttattat
      241 taagggtggg ctttgggata aaagaaaact ttataagctt tacgaaagcg caaaaactcc
      301 ttatgaatgg cattctcaaa tctttgaaac cgcacaaaat gaaggcatac tttgtttttc
      361 aagtcctttt gccaaagaag atttagaatt tctaaaacgc tttgatccta tagcctataa
      421 aatcgcttct tttgaagcta atgatgaaaa tttcgtgcgt ttaatcgcca aagaaaaaaa
      481 acctactatc gtttcaacgg gcattgctac agaagaagaa ctttttaaaa tctgtgaaat
      541 ttttaaagaa gaaaaaaatc ctgatttaat ctttttaaaa tgcacttcgg cttatcctac
      601 tgccatagaa gatatgaatt taaaaggcat agcaagttta aaagaaaaat ttaatgttga
      661 agtgggacta agtgatcata gctttggttt tttagcccct gttatggcag tagcacttgg
      721 agctagagtg atagaaaagc attttatgtt agataaaagc atagaaagtg aagacagtaa
      781 atttagtctt gattttgatg aatttaaagc tatgatagat gcagtaagac aagctgaaag
      841 tgctttaggc gatggtaagt tagatctaga tgaaaaggcg cttaaaaacc gtgtttttgc
      901 aagaagctta tatgcaagta aggatatcaa aaaaggtgaa atgttcagcg aagaaaatgt
      961 aaaatccgtg cgtccttctt ttggactaca tcctaaattt tatcaagaac ttttaggaaa
     1021 aaaagctact aaagatatag aatttggtga tgctttaaaa caaggagatt ttacatgaaa
     1081 aatattttag ttacaggtgc tgatggtttt ataggctctc atctttgtga aagtttggtc
     1141 aaaaaaggtt ttaaagtcag agctttaagt cagtataatt cttttaattt ttggggacat
     1201 ttagaaaaaa gtcctttttt aaaagacatg gaagttgtaa gtggggattt aagagatagt
     1261 tttttttgcg aaaaaatcac caaaaatata gatgcgatct ttcatcttgg cgccttaatc
     1321 gccatcccct actcctacac agccccacaa agctatgtgg ataccaatgt caatggcact
     1381 ttaaatatgc tcgaagcagc taaaaaaaac gaaatttcgc attttatcca cacctcaaca
     1441 agcgaagttt atggcacggc cttttatgtg cccatcgatg aaaaacaccc tttacaacct
     1501 caaagccctt attctgcaag caaaatcgct gcagatatga tggcgctgag ttattataat
     1561 tcttttaatt taaatgtcaa tattgcacgc ccttttaaca cctatggacc aagacaaagc
     1621 gcaagggcta tcatacctac catcatcaca caaattttaa gcggagcaaa ggaaatcaaa
     1681 ctaggagatt taagccctaa aagggattta aattttgtgc tagatacttg cgagggtttt
     1741 atctctcttt taaatttaaa acattttgga gaagtttata atataggctc aggagtggaa
     1801 tactccatgc aagaagtact taatctcata caaaaaattt tagattctaa ggtaaaaatc
     1861 atccaagatg agcaaagatt gcgtcctaaa aatagcgaag tttttagact ttgttgcgat
     1921 gcaaacaagc ttaaaaaagc tacaaattgg caaagcaaaa taagtctaga agaaggttta
     1981 agacaaagca tagagtattt taaagaaaat ttagaaaatt ataaaagtga gctttataat
     2041 gtttgaaaaa gaaatttctt ttataaaaag tctttttaat aaagaaaata tcgccctaca
     2101 tgagccttgc tttataggca atgagaaaaa atatctctta gaatgtatcg atagcggttt
     2161 tgtttcaagc gtaggagaat ttgtaacgcg ttttgaagaa gctttaaaag aaaaaaccaa
     2221 agcacgcttt gtcatcgcta caaatacagg tacagcagcc cttcatatcg ctttattagc
     2281 taatggtatc gatgaaaact gcgaagtcat cactcaaagc ataagctttg tcgctacggc
     2341 caatgctatc gcttatacag gtgcaaaacc cgttttttta gatatagatg aaaacactct
     2401 aagtttaagt cctaaggctt tagagcattt tttagaaaat caaacttatc aaaaagataa
     2461 tcttagctat aacaaaacca cacacaaacc catcaaagct tgtgttatta tgcacacctt
     2521 tggtttaagc gctcatataa aagccatcaa agagctttgt gaaaaatacc acatcctttt
     2581 aattgaagat gctgcagaag ccttaggaag cacctatgaa aacaaggcct taggcacttt
     2641 tggaaagtgt ggaattttaa gctttaatgg taataaaatc atcacaggtg gatgcggtgg
     2701 ggcgatatta agcgatgatg aaaatttagc caaacttgca agacacctta gcaccacagc
     2761 taaaatcccc catccttacg aatacgatca tgataggata gcttataatt accgtctttg
     2821 caatataaac gcagcaatct tgcttgcagg acttgaaaat ttagaacttt ttttagaaaa
     2881 caaaagagaa cttgctaaaa tttacaagga tttttttaaa aatcacgata aatgtaaatt
     2941 tatcgatgaa aaaagcaatg aaaaaagcaa tttttggctc aataccttgc tttttaaaga
     3001 tgaaaattta agaaatatct ttttagaaga atgcttgaaa aataatattt tcgtccgtcc
     3061 tgtatggaaa agcttaccga gtttaaaagc ttttcaaaac tgtcaaagca atgagcttat
     3121 aaacactaaa aaattagaaa aacgcttgat taatttacct agtagcgtta gaatagcaaa
     3181 taaaaaggaa tgatgcgttg caaaatttaa ttcaaagcat taaaaaaatt taataagaaa
     3241 aaatatgaga atagcggcgg gggggggggg tttgatttt
//
LOCUS       DAPIWQ010000156         3189 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.158, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000156 DAPIWQ010000000
VERSION     DAPIWQ010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3189)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3189)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3189
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.158"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            136..834
                     /locus_tag="RJ267_001629"
     CDS             136..834
                     /locus_tag="RJ267_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDV7389463.1"
                     /translation="MKTFISNHKNQSSFITLFVFTPLFFVFLYSKDFLHIQPNEIIKE
                     NKFNMAIKHFVQNSSDMKPTQPTQTIQEPSNVQPKEPVQEIKKIKPRKEKPIAKPKKI
                     IPPANAKAISQPKKDTNMQQPIMQQQTPQASSYQSVSLTSNSELLKEIKSAIDEALIY
                     PRQARKMRMSGEVLVEFTWTKEKKLENLKILKPSKYDFLNKSALETIRIASKKFPQYE
                     KTFHIKIPLVYKLS"
     gene            complement(926..1363)
                     /locus_tag="RJ267_001630"
     CDS             complement(926..1363)
                     /locus_tag="RJ267_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDV7389464.1"
                     /translation="MKKDSYHKITSKLIQEFDLLAVEDLQIKNMCKRAKLKNIKAKSG
                     LNKSILNTSFYQFSQYLEYKAKHNGKFFIKVNPQYTSKTCSVCGNIKKNLMFKDRVYL
                     CEKCGNTLHRDINAANNILKRGLKSFGLGISLEDYKLKAFRIS"
     gene            complement(1484..1747)
                     /locus_tag="RJ267_001631"
     CDS             complement(1484..1747)
                     /locus_tag="RJ267_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDV7389465.1"
                     /translation="MNTFFKMRYHRDLPNTYKFNQITIIKNHNKYYLAFSIIYDESNV
                     SLMSSKDFDIKKAVDIDLNINEITLSSGELIATNSKLLSRAEY"
     gene            complement(2176..2268)
                     /locus_tag="RJ267_001632"
     CDS             complement(2176..2268)
                     /locus_tag="RJ267_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389466.1"
                     /translation="MLETLKKYAENQGIEDNYPKKIYNQKEKKP"
BASE COUNT         1216 a          530 c          343 g         1100 t
ORIGIN      
        1 agcttgatta tttgattgtt atttttctct gtgaaatttg tttcaaaatt tatcttttta
       61 aacaatttac catagaatgt gttttaagaa ataaagatat ttaaatcaaa aaataaaatc
      121 ataacggagt aaaagatgaa aacatttata agcaatcata aaaaccaatc ttcttttatc
      181 actttatttg tttttacacc tttatttttt gtttttcttt attctaaaga ttttttacac
      241 atacaaccca atgaaattat taaagaaaat aaatttaata tggcaatcaa acattttgta
      301 caaaattcct ccgatatgaa accgacacaa cccacacaaa ctatacaaga gccttcgaat
      361 gtgcaaccca aagaacctgt gcaagaaata aaaaaaataa aaccgagaaa agaaaaacct
      421 atcgctaaac ctaaaaaaat aatccctcca gcaaatgcaa aggcaataag tcaacccaaa
      481 aaagatacaa acatgcagca accaatcatg cagcaacaaa ctccacaagc cagctcttac
      541 caaagcgtat ctttaactag taatagtgag cttttaaaag aaataaaatc agcaatcgat
      601 gaagccctaa tctaccctag acaagctaga aaaatgcgta tgagtgggga ggttcttgta
      661 gaatttacct ggacaaaaga aaagaaatta gaaaatttaa aaatacttaa gccttcaaaa
      721 tatgattttc taaataaaag tgctttagaa actatacgca tagcttctaa aaaatttcca
      781 caatatgaaa aaacttttca tataaaaata ccattggtat ataaattaag ctaaatcttt
      841 cacaatatac tctattttta atgcaaatca ctccagcttt gctaacgctt agaagtagaa
      901 gcttcctagc taaagctaac tagtattagc taattcgaaa ggctttgagt ttatagtcct
      961 caaggctaat tcctaaccca aacgacttta atccacgctt taagatatta tttgcagcat
     1021 taatatctct atgtaaagtg ttgccacatt tttcacaaag atacactcta tctttaaaca
     1081 taagattttt tttgatattt ccacatacac tacaagtttt gcttgtatat tgtggattga
     1141 cttttataaa gaatttgcca ttatgctttg ctttatactc tagatattga gagaattgat
     1201 agaatgaagt attaagaata gatttattta aaccactttt agcttttata ttctttaatt
     1261 tagctctttt acacatattc ttaatttgca aatcttcaac tgctagcaag tcaaattctt
     1321 gtatgagttt tgaagttatc ttgtgataac tatccttttt gattttgaac ttttttcata
     1381 gattttattt aattttaatt gtgttttttt gaaattatgg cttaactttg ttttctcctt
     1441 ttttgttttt aatattctcc tgctttgttt tctttgcaat cttttaatat tcagctctac
     1501 taagtagctt tgagttagta gctattaact ctccactgct taaggtaatc tcattgatat
     1561 ttaaatcaat gtcaactgct tttttaatat caaaatcttt gctagacatt aaagaaacat
     1621 tcgattcatc ataaatgata ctaaaagcta aatagtattt attgtgattt ttgataatag
     1681 tgatttgatt aaacttataa gtatttggta aatctctgtg ataacgcatt ttaaaaaatg
     1741 tattcataag tctaaatatc ttaaacttag tagtatcact atctttgatt ttgtaggctt
     1801 gattattcca attaaagctt tgctttgcaa atttagagtt tttaaatttg agaaagcctt
     1861 tgtttttatc tctaattgct tgctctaagg cacgagaaga ttaatccttg cttgttgggt
     1921 tacaacactt ttatagctta attctcttgc ttttataagg ctagttttat tgattatcta
     1981 tcttacttgc ctttaaataa ctcctatctt ttttatctaa attcttattt ttatcccact
     2041 ctcttgctgt aaatttaaac aaatattata ggcttgatat agatgaaaca ttgatgatta
     2101 ataagctttt gttgttcttt gtttaggtag aattctatat ttaaaacctt tggttatttg
     2161 cattgctttg ttccattagg gctttttttc tttttggtta tatatttttt tagggtaatt
     2221 atcttctatg ccttgatttt ctgcatattt tttaagagtt tctagcatta ttccgcatag
     2281 gtattctata aaaaattact gattatgtca aatacctaac tagagccgta caactaacac
     2341 tgtaagcaat tcatctccca cttaagaagt gagagtttta ttgaataaaa aaagataaat
     2401 ttaaagcaag taatcttttt ttagacaaca ctaaaccctt gcatgtattt acagcaatat
     2461 ttatttcatc ataaacaacc cccaacccat aaaaccttca ataaacacta taaaataaaa
     2521 gtatttgtaa agaacaagca aacaataaat ctcaatcacc cagacaaaaa caatctcaac
     2581 cgacccataa agcaataaat caagcaagca taattaattt aattgattaa actaataaat
     2641 ttaatttata agattaacaa taaaaaacca taaattaacc aagctaatcc cacccaaacc
     2701 caaacaagcc ataaattaca cacacttttt tacaaacatc aattaaatag caagactatc
     2761 gataataaaa aatttatctc aagtataaca ttcattctcg ccaacaagaa tagacaatca
     2821 tagtctatcc accctaaccc aacattaacc cctaacccaa ctaagaagtg tataacaacc
     2881 ccaacccata aacctcaata aacactataa aataaacttg agtgattaaa aatccaaccc
     2941 aattattgaa caaacccaac ctacataata aaatataaac tagacatata aagaacaatt
     3001 gacacataaa aatagattga ataaataaac ctatacaagt aaacataaag attaattatt
     3061 gatacaaaag attcaataaa taaataaaaa gaataattga gatataaaaa catataaact
     3121 aaacaactca aacaaccatt aaatcaaccc aagctaatta aacctataaa cataaaaaaa
     3181 taattaaat
//
LOCUS       DAPIWQ010000157         3180 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.159, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000157 DAPIWQ010000000
VERSION     DAPIWQ010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3180)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3180)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3180
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.159"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..1278
                     /locus_tag="RJ267_001633"
     CDS             <1..1278
                     /locus_tag="RJ267_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine--lipid A transferase"
                     /protein_id="HDV7389467.1"
                     /translation="IDSDMMQNVVQTDIKEVKDLLNLKLILFVVLALLLVFYVVKVKI
                     DYYGSFKSHIKIKIINIISGLIVVCAVLIPLSKTFLPFFRNYNEIRMYNTPFYQIYAV
                     YRYYVRFVKAKPEFKTIANDAYRENNHTKKLLVLVVGETARAANYSLGGYTKNDTNFY
                     TKKDNVVFFDNFSSCGTATAVSLPCMFSISKRENYSSSEFQENAMDVLYKTGVDAVWF
                     DNNSGGCKGVCDRLAYKQKLSSDLDENLLAPFKEKLNHLSDQNIIVLHLQGSHGPTYY
                     KRYPSEFKKFTPTCDTNELSKCDSEALINTYDNTLLYTDYLLSEIIKLLKEQKSYESS
                     LFYLSDHGESLGENGIYLHGMPYAIAPSYQTHIPAIFWSNDKNLMNLAKEYKGLKLSQ
                     DNLFSTLLGYFDVKTSVYEPEYDLLNPKLKANP"
     gene            1275..1631
                     /locus_tag="RJ267_001634"
     CDS             1275..1631
                     /locus_tag="RJ267_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HDV7389468.1"
                     /translation="MKPKYHFLNNARYALEGLFALFKNEMAFRIELCIIIPAIVFSFF
                     LKISFLEHLLLISVLILILIVEALNSAIEACVDLITNEWHEKAKISKDCASAAVFFSV
                     LLALFVWGFILYNIYL"
     gene            1628..1873
                     /locus_tag="RJ267_001635"
     CDS             1628..1873
                     /locus_tag="RJ267_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HDV7389469.1"
                     /translation="MKFENLIREILGKKRFELLKFLCENADENGFIMIKISDLEEKLH
                     QSKPTIIATFKFLEEKKLFKRLKNGFYQLNIGDKNET"
     gene            1863..2870
                     /gene="pyrC"
                     /locus_tag="RJ267_001636"
     CDS             1863..2870
                     /gene="pyrC"
                     /locus_tag="RJ267_001636"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HDV7389470.1"
                     /translation="MKLKNPLDMHLHLRDNQMLELIAPLSARDFCAAVIMPNLIPPLC
                     NLEDLKAYKMRILKACKDENFTPLMTLFFKNYDEKFLYSAKDEIFGIKLYPAGITTNS
                     NGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVMDRESNFAKIYEKLAKHFPRLK
                     IVMEHITTKTLCELLKDYENLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDK
                     EALCELAFSGYEKVMFGSDSAPHPKDTKECCGCAAGVFSAPVILPVLAELFKQNSSEE
                     NLQKFLSDNTCKIYDLKFKEDKILTLEEKEWQVPNVYEDKYNQVVPYMAGEILKFQLK
                     H"
     gene            complement(2902..3117)
                     /locus_tag="RJ267_001637"
     CDS             complement(2902..3117)
                     /locus_tag="RJ267_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389471.1"
                     /translation="MVKNLIIKFGRLILDAIAVISFVVALLYSLFMMFSIGFLAGLLS
                     LIVSFIALFLSFFCNLSCYRYQRCSCK"
BASE COUNT         1140 a          395 c          513 g         1132 t
ORIGIN      
        1 atagattctg atatgatgca aaatgttgtt caaacagaca ttaaagaagt aaaagatttg
       61 ttaaatttaa aattgatctt atttgttgtt ttggctttat tattggtttt ttatgttgtt
      121 aaagtaaaaa ttgattatta tggtagtttt aaatcccata taaaaattaa aattatcaat
      181 ataatatcag gtttgattgt tgtttgtgca gttttaatcc ctttaagtaa aactttcttg
      241 ccttttttta gaaactataa tgaaataaga atgtataata ctccttttta tcaaatttat
      301 gccgtatatc gctattatgt tcgttttgta aaagctaagc cagaatttaa aactatagct
      361 aatgatgctt atagagaaaa caatcacact aaaaaacttt tggttttggt ggtgggtgaa
      421 accgctagag cggcaaatta ctctttgggt ggatatacta aaaatgatac caatttttat
      481 accaaaaaag ataatgtagt cttttttgat aatttttcat catgtggaac agcaacagcg
      541 gtaagtttgc cttgtatgtt ttctatttct aagcgtgaaa attattcaag ttcagagttt
      601 caagaaaatg cgatggatgt gctttataaa acaggtgtag atgctgtatg gtttgataat
      661 aattctggtg gttgtaaagg ggtttgtgat agattagctt ataagcaaaa gctttctagt
      721 gatttggatg aaaatttact cgcccctttt aaagaaaaat taaatcattt aagtgatcaa
      781 aatataatag ttcttcattt gcaaggttct catgggccaa cttattataa acgctatcca
      841 agcgaattta aaaaatttac tccaacttgt gatactaatg aactttcaaa atgtgatagc
      901 gaggctttaa tcaacactta tgataatact ttgctttata cagactatct tttaagtgag
      961 attataaaac tattaaaaga gcaaaaaagc tatgaaagtt ctttgtttta tctttcagat
     1021 catggtgaaa gtttgggtga aaatggtatt tatcttcatg gtatgcctta tgctatagca
     1081 ccaagttatc aaactcatat tcctgctatt ttttggagca atgataaaaa tttaatgaat
     1141 ttagctaaag agtataaagg tttaaaactt tctcaagata atctttttag tactctttta
     1201 ggatattttg atgtaaaaac aagtgtttat gaaccagaat atgatttatt aaatcctaaa
     1261 cttaaggcaa atccatgaag cctaaatatc attttttaaa taacgcaaga tatgctttag
     1321 aagggctttt tgctttattt aaaaatgaaa tggcgtttag aattgaactt tgcattatta
     1381 tccccgcgat agtttttagt tttttcttaa aaattagttt tttggagcat ttgttattga
     1441 taagtgtctt aatacttatc ttaattgtag aagctttaaa ttcggctatt gaagcttgtg
     1501 ttgatttgat tacaaacgaa tggcatgaaa aggcaaaaat ctctaaagat tgtgcgagtg
     1561 cggcagtgtt ttttagtgtg cttttagctc tttttgtttg gggctttatt ttatataata
     1621 tttacttatg aaatttgaaa atttaatacg agaaatttta ggaaaaaagc gttttgaatt
     1681 gttaaaattt ttatgtgaaa atgccgatga aaatggtttt attatgatta aaatcagtga
     1741 tcttgaagaa aaattacatc aaagtaaacc taccatcatc gctactttta agtttttaga
     1801 agaaaaaaaa ctttttaagc gtcttaaaaa tggattttat cagctaaata taggagataa
     1861 aaatgaaact taaaaatcct ttagatatgc atttgcattt aagagataac caaatgttag
     1921 aacttattgc acctttgagt gcaagagatt tttgtgcagc tgtgattatg ccaaatttaa
     1981 tccctccgct ttgcaattta gaagatctaa aagcttataa aatgcgtatc cttaaggctt
     2041 gtaaagatga aaatttcact cctttaatga cacttttttt taaaaattat gatgagaaat
     2101 ttctttacag tgctaaagat gaaatttttg gcattaagct ttatccagca ggaattacaa
     2161 caaattcaaa tggtggagtt tcaagttttg atatagagta tttaaaacct actttagagg
     2221 ctatgagtga tttaaatatt cctttgctag tgcatggtga aaccaatgat tttgtaatgg
     2281 acagggaaag taattttgct aaaatttatg aaaaattagc caaacatttt ccacgactta
     2341 agattgttat ggagcatatt accactaaaa ctttatgtga acttttaaaa gattatgaaa
     2401 atttatacgc gacaatcact ttacatcatt taatcatcac tttagatgat gttatcggag
     2461 gtaaaatgaa tcctcatctt ttttgtaagc ctatagccaa gcgttacgaa gataaagaag
     2521 ccctttgcga acttgctttt agtggttatg aaaaagttat gtttggaagt gatagtgcgc
     2581 ctcatccaaa agatactaaa gagtgttgcg gttgtgccgc aggtgtattt agtgccccag
     2641 tgattttacc tgttttagct gaattattta agcaaaatag ctcagaagaa aatttgcaaa
     2701 aatttttaag cgataatact tgtaaaattt atgatttaaa atttaaagaa gataaaattt
     2761 taactttaga agaaaaagaa tggcaagtac caaatgttta tgaagataaa tacaatcaag
     2821 tcgtgcctta tatggctgga gaaattttga aatttcaatt aaaacattga ttttccacct
     2881 taaaggtgga aaatttaagc tttatttaca agagcatctc tgatatctat aacaagatag
     2941 attacaaaaa aaacttaaaa ataaagcaat aaaactgact atcaatgaca ataaaccagc
     3001 taaaaatcca atgctaaaca tcataaaaag agaataaagc aaagctacaa caaaacttat
     3061 cactgcaatt gcatcaagaa tcaagcgtcc aaatttgatg attaaatttt taaccattaa
     3121 aaactccttt gaaataatga gtgaaattgt aatcaatata agcttaatat ttttataagt
//
LOCUS       DAPIWQ010000158         3149 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.160, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000158 DAPIWQ010000000
VERSION     DAPIWQ010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3149)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3149)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3149
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.160"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..558
                     /locus_tag="RJ267_001638"
     CDS             <1..558
                     /locus_tag="RJ267_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389472.1"
                     /translation="AKADEVMFFKILSDVLTDAGYIYFIPTDLILREGNIDYTIQVES
                     QYVLDPGTLYNLLKENSVYINNIKRIGVYDYEYDLNFSNAVLKTNTNVNLNTPKSLEK
                     PLKDYVLDLKNATNLIIDANDLDNWFPKIFFLDKNLNLIKAVKSENKNNHFSELIPNG
                     AIYAIVSDMYSLDNIRRGLKITLKK"
     gene            570..1772
                     /locus_tag="RJ267_001639"
     CDS             570..1772
                     /locus_tag="RJ267_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HDV7389473.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPN
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATM
                     GSKEGFVNLARAIINPGDVAIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQ
                     FFENLHKTLNESIPCPKYVVVNFPHNPTTVTCEKSFYERLIATAKKERFYIISDIAYA
                     DLTYDDYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSW
                     FDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFV
                     WAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQAAR
                     NIKKYLKE"
     gene            1776..3023
                     /locus_tag="RJ267_001640"
     CDS             1776..3023
                     /locus_tag="RJ267_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HDV7389474.1"
                     /translation="MKVAILGYGTVGSAVVKFLLENDKLIRARCGQSITPVIALARSP
                     KKNALIPITHSVAEILNADVDVFVELMGGVDEAFKIVSEILKKKKAVVTANKAMLAYH
                     RYELENLAKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQ
                     KNMSFKQALQIAQNLGYAEADPTFDIEGQDAAHKLLVLSSIAYNLKAKPEDILIEGIS
                     EIAPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISIN
                     GDLLGESLYYGAGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYKLLSKDEIYT
                     KYYLRVKVEDKIGILSKITQLMSENNISIDSFLQKPKKNDENYSTLFFTTHLTYEKSI
                     QNLLEILRKQDFIKTKPFMMRIE"
     gene            3023..>3149
                     /locus_tag="RJ267_001641"
     CDS             3023..>3149
                     /locus_tag="RJ267_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HDV7389475.1"
                     /translation="MGVKAYLDGILGEDKACKFLKKQGFEILKRNFHSKFGEIDII"
BASE COUNT         1163 a          394 c          588 g         1004 t
ORIGIN      
        1 gcaaaagctg atgaagttat gttttttaaa attttatccg atgttttaac agatgctgga
       61 tatatatatt ttatccctac agatttgatt ttaagagaag gaaatattga ctataccata
      121 caagtagaat ctcaatatgt tttagatcct ggaacgcttt acaatctctt aaaagaaaat
      181 tctgtctata taaataatat taagcgtatt ggggtatatg actatgaata tgatttaaat
      241 ttttccaatg ctgtattaaa aaccaataca aatgttaatt taaatactcc aaaatcatta
      301 gaaaagcccc ttaaagacta tgtgcttgat ttaaaaaatg ctacaaattt gattattgat
      361 gcaaatgatt tagacaattg gtttcctaaa atcttctttt tagataaaaa tctgaatcta
      421 attaaagcag taaaaagcga aaataaaaat aatcattttt cagaacttat tccaaatggt
      481 gctatatatg ctattgtaag cgatatgtat agtttagata atatacgcag gggtttaaaa
      541 atcacactta aaaaataaag gattaagaaa tgtttgatga aatccgtttt aataccatag
      601 aaagacttcc aaattatgtt ttcgcagaag taaatgcgat aaaaatggca gcaagacgtg
      661 ctggagagga tatcatcgac ttttcaatgg gaaatcccaa tggtaaaact ccacaacaca
      721 ttatagataa actttgtgaa agtgctaaca aagataaaac ctcgggatat tctacatcca
      781 tggggattta taaacttcgc ttagcaattt gtaattggta taaaagaaaa tataatgtca
      841 acctagatcc tgaaaatgaa gttgtagcta ctatgggttc aaaagagggt tttgtaaatc
      901 ttgcaagagc gattataaat cctggagatg ttgctattgt gccaactcct gcttatccta
      961 tacatactca agcttttatt atagcaggag gtaatgtagc aaaaatgcct ttagcttata
     1021 atgaaaaatt tgagcttgat gaaaatcaat tttttgaaaa tttacataaa actttaaatg
     1081 aaagcatccc gtgtccaaaa tatgtcgttg ttaatttccc gcataatcca acaacagtaa
     1141 cttgtgagaa aagtttttat gaaagattga tagcaacggc aaaaaaagaa agattttata
     1201 ttatttcaga tattgcttat gcagatttaa cttatgatga ctataaaact ccttctattt
     1261 tggaaattga aggcgcaaaa gatgtagcgg tagaaactta cactctttca aaatcttaca
     1321 atatggcagg ctggcgcgtg ggttttgtag taggaaataa acgcttagtc agtgcgctta
     1381 aaaaaataaa atcttggttt gattatggta tgtacacacc tattcaagta gcagctacca
     1441 tagctttaga tggagatcaa acttgtgtag atgaaatccg tgcaacttat gataaaagaa
     1501 tgcacatttt acttgaagct tttgaaaatg caggctggaa acttcaaaaa ccaagagcaa
     1561 gtatgtttgt ttgggcaaaa ctccctgaaa gcaaaagaca tttaaaaagt ttagaatttt
     1621 caaagcaact tttacagcgt gctagtgttg cagtaagtcc tggggtaggt tttggcgaag
     1681 caggtgatga gtatgtaaga attgctttaa ttgaaaatga aaatcgcata cgccaagctg
     1741 cacgtaatat caaaaaatat ttaaaagagt aagttatgaa agtagcgatt cttggttatg
     1801 gcactgttgg aagtgcggtg gttaaatttc ttttagaaaa tgataaactc attcgtgcaa
     1861 gatgtgggca aagcataact cctgtgatcg ctcttgctag aagtcctaaa aaaaatgctt
     1921 taattccaat tactcatagc gttgcagaaa ttttaaatgc tgatgtagat gtttttgtag
     1981 aattaatggg tggggtggat gaagctttta aaatagtgag tgaaatttta aaaaagaaaa
     2041 aagctgttgt tactgcaaat aaagctatgc ttgcttatca tcgttatgaa cttgaaaatt
     2101 tggctaaaaa tttagctttt ggttatgaag caagtgtggc tggaggaatt cctattatca
     2161 aggttttaaa agaaggttta agtgcaaata atattttggc tataaaaggg attttaaatg
     2221 gtacgagtaa ttatatttta agttctatga gtcaaaaaaa tatgagtttt aaacaagctt
     2281 tgcaaatagc tcaaaattta ggttatgcag aggctgatcc aacttttgac atagaagggc
     2341 aagatgcagc acataaactg cttgttttat caagtatcgc ttataatctt aaagctaaac
     2401 ctgaagatat tttgatcgag ggtattagtg aaattgcacc tgaagatatg tattttgcta
     2461 atgagtttga atttaccata aaacttttag gtatagctaa ggtgcgtgaa aataaagtag
     2521 aattaagggt gcatcctact atgatagata aagaaaaaat gcttgcaaaa gttgatggag
     2581 tgatgaatgc tataagcatt aatggagatt tgttgggtga aagtttgtat tatggagcag
     2641 gagcaggagg agaggccact gcaagtgctg tgatttcaga tcttatggat atagcaagag
     2701 atcaggtaaa agcaccaatg cttggttttg tgaatacttt agaatacaag cttttaagca
     2761 aagatgaaat ttatacaaaa tattatttaa gggtgaaagt tgaagataaa atagggattt
     2821 tatctaaaat cacacaattg atgagtgaaa ataatatttc tatcgatagt tttttacaaa
     2881 aacctaaaaa aaatgatgaa aattacagta ctttgttttt tactacacat ttaacttatg
     2941 aaaaaagcat acaaaatttg cttgaaattt tacgcaaaca agattttata aaaaccaagc
     3001 cttttatgat gcgtatagaa taatgggtgt aaaagcttat ttagatggaa ttttagggga
     3061 agataaggct tgtaaatttt taaaaaaaca aggctttgaa attttaaaaa gaaatttcca
     3121 ttctaaattt ggagaaatcg atataatag
//
LOCUS       DAPIWQ010000159         3108 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.161, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000159 DAPIWQ010000000
VERSION     DAPIWQ010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3108)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3108)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3108
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.161"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..1625
                     /locus_tag="RJ267_001642"
     CDS             <1..1625
                     /locus_tag="RJ267_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7389476.1"
                     /translation="ILRELCRNYVVSISSINAFTLLSTIFGNDKYLYLDALEDLKKLI
                     ERGFVNQNSSFFKSLENNKTQTLTLALLQSELSLSEYFLEFLEAKPRLNFEKQEAYAD
                     YLEYLKDEFARIQLYERLSFIQKSAYNSEIKNQIKLYERHIKERLKKSKFYNVLADIF
                     KEYNLEHKEQIIFLALLKEEYALSNESSISREMNSLLSLISENDLERHKNKKLLQENA
                     PLLNLIECDEYLNAFGDISKSFFIIDEILQRIINFEPKQSKKIKIESVLKDQDIFELI
                     EPSTDINDIIMPENTKELLENILKQQDKKVLERLHSWGIKSNKNIEAKIIFYGPAGTG
                     KTMSALAMAKSMKKSVLSFDCSKILSKWVGESEQNVRKIFDTYKNIVQTCKQSPILLL
                     NEADQFLSTRVDGSSGSDKMHNQMQNIFLEQIERFSGVIIATTNFLESLDSAFSRRFD
                     YKIEFKKPDFKDRLKIWEKFLPKKALFEKDFDINILSNYELSGAQILMVVKNTALKVA
                     VSKDGVFKMQDFIESIQKELNSSFDKSKIVGF"
     gene            complement(1590..2162)
                     /locus_tag="RJ267_001643"
     CDS             complement(1590..2162)
                     /locus_tag="RJ267_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HDV7389477.1"
                     /translation="MQTKYFKFLAYFSFIISLIYGFYHIIKAFDFVKEAYIYTGIFAL
                     IFLNLSLLFSLLKFKKTRNYPKILGIFAAFWAILHFLNYFIFDRNAQILRLFDDISHR
                     LLEASGFIAFLIIFLMLLSSFKIFKKLSKIRKLGYLCLVLASYHYFLTPKIPMFWEWS
                     ALIIALFYFIVRYTKTLKKLKSNNLTFIKT"
     gene            complement(2162..3055)
                     /gene="msrP"
                     /locus_tag="RJ267_001644"
     CDS             complement(2162..3055)
                     /gene="msrP"
                     /locus_tag="RJ267_001644"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HDV7389478.1"
                     /translation="MLITPEKLYKQRRNFLKLGAGALISSSVLASKLSALNFTSDTNP
                     NKLEISDEELATNYVNFYEFSTDKRKAVSLAQNFNTQNWKIDISGEIEKPLTLSMEDI
                     LKFPLEERIYRFRCVETWSMVVPWVGFELRRLIEMAKPTSEAKFVKFTTLLDKSQFPD
                     QDALFPTIDYPYVEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLVVPWKYGFKSI
                     KSIVKIKFTKEQPKSTWESYAPSEYGFYANVNPNVSHPRWSQANERALGDFFTKPTLM
                     FNGYEKEVASLYKNMDLKVNF"
BASE COUNT         1189 a          387 c          465 g         1067 t
ORIGIN      
        1 tgattcttag ggagctttgt agaaattatg tcgtttctat ttcttctatc aatgccttta
       61 ctttattatc gacaattttt ggaaatgata agtatcttta tcttgatgct ttggaggatt
      121 taaaaaaact tattgaaaga ggttttgtaa atcaaaattc gagttttttt aaaagtttag
      181 aaaataataa aactcaaaca ttaactcttg ccttattgca aagtgagctt agtctaagtg
      241 aatatttttt agaattttta gaagcaaaac ctcgtttaaa ctttgagaaa caagaggctt
      301 atgcagatta tttagaatat ttaaaagatg aatttgcgcg tattcaatta tatgaaagat
      361 taagttttat acaaaaaagt gcttataata gtgaaataaa aaaccaaatt aaactttatg
      421 aaagacatat caaagaaaga ctaaaaaaaa gtaaatttta taatgtattg gctgatattt
      481 ttaaagaata taatcttgaa cataaagaac aaattatttt tctagcactt ttaaaagaag
      541 aatatgcctt aagtaatgaa agttcgattt ctagagaaat gaattcttta ctttctttaa
      601 tcagtgaaaa tgatttagaa agacataaaa acaaaaaatt attacaagaa aatgctcctc
      661 ttttaaactt aatcgagtgt gatgaatatt taaatgcttt tggagatatt tctaaaagtt
      721 tttttattat tgatgaaatt ttacaaagaa ttataaattt tgaaccaaaa caaagtaaaa
      781 aaatcaaaat tgaaagtgtt ttaaaagatc aagatatttt cgagcttata gaaccaagca
      841 ctgacatcaa tgatattatt atgcctgaaa atacaaaaga gcttttagaa aatattttaa
      901 aacaacaaga taaaaaagtc ctagaaagac ttcattcttg gggtataaag agtaataaaa
      961 atatagaagc taaaattatt ttttatggtc ctgctggtac tggaaaaact atgtcagctt
     1021 tagctatggc taaatcaatg aaaaaatctg ttcttagttt tgactgttct aaaattttga
     1081 gcaaatgggt tggagagagt gagcaaaatg taagaaaaat ttttgatact tataaaaata
     1141 tcgtgcaaac ttgcaaacaa agtcctattt tacttctcaa tgaagccgat cagtttttaa
     1201 gtacgcgtgt agatggaagt agtggtagtg ataaaatgca taatcaaatg caaaatatat
     1261 ttttagagca aatcgagcgt tttagtggtg tgattatcgc tacgacaaat tttttagaaa
     1321 gcttagatag tgcattttca agaagatttg attataagat agaatttaaa aaacctgatt
     1381 ttaaagatag gcttaaaatt tgggaaaaat ttctacctaa aaaagcatta tttgaaaaag
     1441 attttgatat aaatatttta tcaaattatg aattaagtgg agcacaaatt ttaatggtgg
     1501 tgaagaatac agctttgaaa gtagctgtat caaaagatgg ggtttttaaa atgcaagatt
     1561 ttatagaaag catacaaaaa gaattaaatt caagttttga taaaagtaag attgttggat
     1621 tttaactttt ttaatgtttt tgtatagcga actataaaat aaaacaaagc tataattaaa
     1681 gcactccatt cccaaaacat aggaattttt ggggttaaaa aataatgata acttgccaaa
     1741 actaagcata aatatcctag ttttctgatt ttactaagtt ttttaaagat tttaaaagaa
     1801 cttaaaagca ttaaaaatat gattaaaaat gcgataaatc cacttgcttc taataaacga
     1861 tgtgaaatat catcgaaaag ccttaaaatt tgagcatttc tatcaaaaat aaaataattt
     1921 aaaaagtgca aaatcgccca aaaagctgca aaaataccta aaattttagg ataatttctt
     1981 gtttttttaa atttaagtaa agaaaataaa agacttaaat ttaaaaagat taaagcaaat
     2041 attccagtgt aaatataggc ttcttttaca aaatcaaagg cttttatgat atgataaaag
     2101 ccataaatta aacttatgat aaagctaaaa taagcaagaa atttaaagta ttttgtctgc
     2161 attaaaaatt cactttcaag tccatgtttt tatataaact tgccacttct ttttcatatc
     2221 cattaaacat taaagtaggt ttggtaaaga agtctcctaa agccctttcg ttagcttgag
     2281 accatctagg atgagaaaca ttaggattga cattagcata aaaaccatat tcacttggag
     2341 cgtaactttc ccaagtagat ttaggctgtt ctttggtaaa ttttatttta actatggatt
     2401 taatactttt aaagccatat ttccaaggaa caacaaggcg tattggagcg ccattttgag
     2461 gctttaaggc ttttttatac attcctactg caagcaaggt aagaggatgc atagcttcat
     2521 ccatgcgaag tccttctaca taaggatagt ctatagttgg aaataaagcg tcttgatcgg
     2581 gaaattgact cttatctaaa agagtggtga atttaacaaa ttttgcctcg cttgtaggtt
     2641 ttgccatttc aatcaaacga cgcaattcaa agcctaccca aggtaccacc atagaccaag
     2701 tttcaacaca gcgaaaacga taaattctct cttctagtgg aaattttaaa atatcttcca
     2761 tgcttaaagt taaaggtttt tctatttctc cactgatatc gattttccaa ttttgagtat
     2821 tgaaattttg tgccaatgat acagcctttc ttttatctgt tgaaaattca taaaaattga
     2881 cataatttgt agctagttct tcatcgctga tttcaagttt gtttggatta gtatcgcttg
     2941 tgaaatttaa agcagatagt ttagaagcaa gcacgcttga acttattaaa gcacccgctc
     3001 caagttttaa aaaatttctc ctttgtttat aaagtttttc aggtgttata agcataattt
     3061 ttccttatta aaaattttta ttattaaact ataacaatgt taatacag
//
LOCUS       DAPIWQ010000160         3104 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.162, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000160 DAPIWQ010000000
VERSION     DAPIWQ010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3104)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3104)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3104
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.162"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..262)
                     /locus_tag="RJ267_001645"
     CDS             complement(<1..262)
                     /locus_tag="RJ267_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HDV7389479.1"
                     /translation="MKKEQLEVLKEALNGLIYQIDNHQQARKPIADVERIISELQVLN
                     HWNKQENVYNALHLIQGAIADPQGLGRLNLLLDNARIPKQYYD"
     gene            complement(281..1222)
                     /locus_tag="RJ267_001646"
     CDS             complement(281..1222)
                     /locus_tag="RJ267_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase"
                     /protein_id="HDV7389480.1"
                     /translation="MSKKVLITGGAGYIGSVLTPILLEKGYEVCVIDNLMFDQISLLS
                     CFHNKNFTFINGDAMDENLIRQEVAKADIIIPLAALVGAPLCKRNPKLAKMINYEAVK
                     MISDFASPSQIFIYPNTNSGYGIGEKDAMCTEESPLRPISEYGIDKVHAEQYLLDKGN
                     CVTFRLATVFGISPRMRLDLLVNDFTYRAYRDKFIVLFEEHFRRNYIHVRDVVKGFIH
                     GIENYDKMKGQAYNMGLSSANLTKRQLAETIKKYIPDFYIHSANIGEDPDKRDYLVSN
                     TKLEATGWKPDNTLEDGIKELLRAFKMMKVNRFANFN"
     gene            complement(1246..2286)
                     /locus_tag="RJ267_001647"
     CDS             complement(1246..2286)
                     /locus_tag="RJ267_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HDV7389481.1"
                     /translation="MQTNSKIYIAGHKGTAGTALVENLQKRGFNNLVLKTRQELDLVN
                     QQAVAKFFKEEKPEYVFLTAVLPCGAANVAQRADFIYENLMIQNNVIHNSFLNNVKKL
                     VFFGSGYMYPENAKNPLKEEYLFQGDLEYGAYSFGAAKIAGAIMCESYNIQYGTNFIT
                     LVLNNLYGTKANFDFGKSRVLPALLRKFHLAKLLSEGNITQILQDLKMNNFEEAKEYL
                     HNFGISKKSVEIWGTGKVRREFIHSDDLADVAIYTMQNIDFKDLIKDRKSKNTHINIG
                     TGIDYSIKEVALMVKNIVGFSGELVFNTSRPDSTMDRLMDCSKIHSLGWKHKIELKDG
                     IKMMYEWYKTQN"
     gene            complement(2286..2909)
                     /locus_tag="RJ267_001648"
     CDS             complement(2286..2909)
                     /locus_tag="RJ267_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011812795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389482.1"
                     /translation="MSDINAKALSLGVSDSSPWDLEMAQRGFKVIEYDASIEKCPYDH
                     ENIVFHKKFIGNVNNENTITLVQALKDNNLDENKPNILQCDIENCEWDMLENIDISIL
                     NKYFSQVIFEFHGCNPEEQDGVEKRISLLKKLNEYFVPMHTHFHNHGKIFYSQGLFFS
                     TTLEVSYLRKNLINLDIMKYRDVAGGFKNLDFPWISNPEIPIRFRGY"
     gene            complement(2913..3104)
                     /locus_tag="RJ267_001649"
                     /pseudo
     CDS             complement(2913..3104)
                     /locus_tag="RJ267_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858116.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1038 a          593 c          343 g         1130 t
ORIGIN      
        1 tatcataata ttgttttgga attctggcat tatctaataa caaatttaat ctaccaagcc
       61 cttgtggatc ggctatagca ccctgaatta aatgcaatgc attataaaca ttttcttgct
      121 tattccaatg gtttaatact tgcaactctg aaattatcct ttctacatca gctattggtt
      181 tcctagcttg ctgatgatta tcaatttgat aaatcaagcc atttagagcc tcttttaata
      241 cttccaattg ttcttttttc attatttatc tcctttaatt ttaattaaaa tttgcaaagc
      301 gattaacttt catcatttta aacgctctta aaagctcttt aataccatct tctaaagtat
      361 tatctggttt ccaacctgta gcctctaatt tagtatttga aaccaaataa tctcttttat
      421 ctggatcttc acctatgttg gctgaatgga tataaaaatc aggaatatac tttttaattg
      481 tttcagcaag ctgtcttttg gtcaaatttg cagaacttaa tcccatgtta taagcctgac
      541 ccttcatctt atcataattc tcaattccat gaataaatcc tttaaccaca tcgcgaacat
      601 gaatataatt gcgtctaaaa tgctcttcaa aaagcactat aaatttatct ctatatgcac
      661 gataagtaaa atcattaaca agtaaatcaa gtctcattct aggtgaaatt ccaaaaacag
      721 tagctaaacg aaaagtcaca caatttcctt tatcgagcaa atattgctcc gcatgcactt
      781 tatcgatccc atattctgag ataggacgca agggagattc ttcagtacac attgcatctt
      841 tttctcctat accataaccg ctgtttgtat tgggataaat aaatatttga gaaggacttg
      901 caaaatcact tatcattttt acggcttcat aattgatcat tttagctaat tttggatttc
      961 ttttacaaag tggagctcca actaaagcag ctagaggaat aataatatca gcttttgcta
     1021 cctcttgcct aataagattt tcatccatag catcaccatt tataaaagta aaatttttat
     1081 tatgaaaaca agataaaaga gaaatttgat caaacatcaa attatcaatc acacaaactt
     1141 cataaccttt ttcaagtaaa atcggcgtta aaaccgaacc tatataacct gcaccacctg
     1201 taattaaaac tttttttgac atacttttcc tttcgtcttt gaaaatcaat tttgtgtttt
     1261 ataccattca tacatcattt taataccatc tttaagttca attttatgct tccaacctaa
     1321 agaatgaatt tttgagcaat ccataagtct atccattgtg ctatccggtc tagaagtatt
     1381 gaaaactagt tctccgctaa acccaactat attttttacc atcaaagcaa cttctttgat
     1441 tgaatagtca atacctgtcc ctatattaat atgggtattt ttactttttc tatctttaat
     1501 aagatcttta aaatcaatat tttgcatcgt atagatagct acatcggcta gatcgtcact
     1561 atgaataaat tctctcctaa cttttccagt gccccaaatt tctacacttt ttttactaat
     1621 tccaaaatta tgcaaatatt cttttgcttc ttcaaaatta ttcattttca aatcttgaag
     1681 gatttgagtt atattaccct cgcttaacaa ttttgctaaa tgaaattttc taagcaatgc
     1741 gggtaagact cttgattttc caaaatcaaa atttgcttta gttccgtaaa gattatttaa
     1801 aacaagagta atgaaattag taccatattg aatattataa ctttcacaca ttatagctcc
     1861 agctattttg gctgcaccaa aagaataagc gccatattct aaatcacctt gaaataaata
     1921 ttcctctttc aatgggtttt tagcattctc aggatacata tacccagaac caaaaaatac
     1981 caatttttta acattattaa gaaatgaatt gtgaataaca ttgttttgaa tcatcaaatt
     2041 ttcataaata aaatcagccc tttgagcgac atttgcagca ccacaaggta agactgcagt
     2101 caaaaaaaca tattctggct tttcttcttt aaaaaattta gcaaccgctt gctgattaac
     2161 caaatcaagc tcttgccttg tttttaaaac aagattatta aatcctcttt tttgtaagtt
     2221 ttctaccaat gctgtacctg cggttccttt gtgccccgct atatatattt ttgaatttgt
     2281 ttgcatcaat aacctctaaa tcgtattgga atttctggat ttgaaatcca aggaaaatct
     2341 aaatttttaa atccccctgc gacatctcta tatttcataa tatcaagatt aatcaaattt
     2401 tttcttaaat aactaacctc caaagtggta ctaaaaaata atccttgaga ataaaaaatt
     2461 ttcccatggt tgtgaaaatg tgtatgcatt ggaacaaaat attcattaag tttttttagc
     2521 aaacttattc ttttttccac cccatcttgc tcctcaggat tgcacccatg aaattcaaat
     2581 ataacttgtg agaaatattt atttaaaata cttatatcaa tattttcaag catatcccat
     2641 tcgcaatttt caatatcaca ttgcaaaata tttggcttgt tctcatctaa attattatct
     2701 tttaaagctt gtaccaaagt aattgtattc tcattattta cattacctat aaatttttta
     2761 tgaaaaacaa tattttcatg gtcataagga catttttcta tactagcatc atattctatc
     2821 accttaaatc ccctctgagc catttctaaa tcccaaggag aactatccga aacacccaaa
     2881 gaaagagctt ttgcattaat atcactcata tccccccccc cattatacat cacataacca
     2941 ccatctccat taccacctat tcttaacaaa tcacacaaag gcaattccaa aggtcgaatg
     3001 agatttaaat aatttataat attttgataa cattgttcat tattatttat acgaatataa
     3061 tttctatctc ttgcttgtaa taataaaagt aaaatttctt tatc
//
LOCUS       DAPIWQ010000161         3051 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.163, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000161 DAPIWQ010000000
VERSION     DAPIWQ010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3051
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.163"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..95
                     /locus_tag="RJ267_001650"
     CDS             <1..95
                     /locus_tag="RJ267_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HDV7389483.1"
                     /translation="VEYSLTSLGNSLESILKSLENWGNSYKNIV"
     gene            182..1128
                     /gene="arsP"
                     /locus_tag="RJ267_001651"
                     /pseudo
     CDS             182..1128
                     /gene="arsP"
                     /locus_tag="RJ267_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_129557825.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="organoarsenical efflux permease ArsP"
     gene            1138..1461
                     /locus_tag="RJ267_001652"
     CDS             1138..1461
                     /locus_tag="RJ267_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HDV7389484.1"
                     /translation="MQKFLAIISAINDESRILILYHLLRYKELCVCDLQELLNMGQSR
                     LSRHLKILKDAGFLYVRRQGTWAYYGINNELLKLHLDLFENIKNLELKNVIKKNENII
                     TQICP"
     gene            complement(1469..1900)
                     /locus_tag="RJ267_001653"
     CDS             complement(1469..1900)
                     /locus_tag="RJ267_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HDV7389485.1"
                     /translation="MAYTIKKVEKETKISAHTLRFWAKKGLFPFVQKDENSVKYFSKS
                     DIEWVKWIEWLRISGMPIEQIKHYIKLCSLGIKTAKERQEMLKQTKKKLQNQIKTLKE
                     SEKVLSKKIKIYEEMLANEVDGFNPESKDYQPCDKLHKFKG"
     gene            1980..>3051
                     /locus_tag="RJ267_001654"
     CDS             1980..>3051
                     /locus_tag="RJ267_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HDV7389486.1"
                     /translation="MLKITKIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKT
                     SLYESTLKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDIANLPYQSLITEENIINNVG
                     PILKYYHHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTND
                     IFVTPAYLDTVLKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVAKTPGNTFLFDQ
                     KNKIFAATNKELLNPSIDHSPVLNAYKLNGDNNFFSYKLNNEERLGACTKVFAYTACI
                     TESADIINKPIYKAAFIQAIVVIIVVVFSVILLYFIVSKYLSPLAAIQTGLTSFFDFI
                     NYKTKNVSTIEVKSNDEFGQISN"
BASE COUNT         1056 a          419 c          383 g         1193 t
ORIGIN      
        1 aggttgagta ctcacttaca tctttaggca atagtttaga atccatctta aaaagtcttg
       61 agaattgggg aaatagctat aaaaatatcg tttaagtaat aaattaatat atcaatatat
      121 atattaattt attaatttat acatgttata ttttttggaa atatttttaa aaggataaaa
      181 aatgcagtct tttttaaata ctttcaaaga gtttttatat ctatttactg agctttctgt
      241 actttttata gctatttctt ttttagtttc tattatcaat caaaaatacg aaggaatttt
      301 taaaaacaac ttgctggtga caaaatttca agttatttta aagctatatt tttaggtgct
      361 ttaacgccat tttgttcctg ttctaccata ccgcttttaa gagctttttt agaagcgaaa
      421 gtaaaactta gcatagcttt agcttatctt tttacttcgc ctcttattaa tcctattatt
      481 ttttccatgc tttttgtaac ttttggttta aagttaagtt tgatttatgt ggtttttttg
      541 atatttttga tatttattat ttcttttgtt ttttctaaat ttaaggaaga tagtttttta
      601 aaacatattc ctaaaaatac aaaatcaagt atttttaccc aaagcgctca caatcctagc
      661 aattttattt ttaaacaaaa atcatgctgt gcaaatactc aagataagtc taaaaatata
      721 acgataaact ataaagaatt attcaaagaa agtttgaaaa attataaaaa attattacct
      781 tatatcgttg tggcagtttt tatcggtgct tttattcatg gttttattcc tcaagaaatt
      841 ttacaaaaat acctaaatgg caatgaaatt ttaagcattg cattagcggc ttttttagga
      901 attttccttt atttaagagt agaaactatt attcctatag gcttagcact tttacaaatg
      961 ggaatttctc aaggagtgat tatgagtttt ttaatcgctg gtgctggatg ttctttacct
     1021 gagcttgttt tactcaaaca aatgtttaaa atgaaatttt tatttttatt tgttatgatt
     1081 attttaggcg tggctatatc ttttggaatt tttattaatt taatttaagg aaataaaatg
     1141 caaaaatttt tagccattat ttcagcaatc aatgatgaaa gtaggatttt gattttgtat
     1201 catcttttaa gatacaaaga actttgtgtt tgtgatctac aagagctctt aaacatgggt
     1261 caatcaagac tttcaagaca tttaaaaatt ttaaaagatg caggtttttt gtatgtaagg
     1321 cgtcaaggaa cttgggcgta ttatgggatt aataatgagc ttttaaagct gcatttagat
     1381 ctttttgaaa atatcaaaaa tttagagctt aaaaatgtta ttaaaaaaaa tgaaaatatt
     1441 attacccaaa tttgccctta atataaaatc aacccttaaa cttatgcaat ttatcacaag
     1501 gttgatagtc cttgctttct ggattaaacc catcgacttc atttgcaagc atttcttcat
     1561 aaatttttat ctttttgctt aaaacttttt cactttcttt taatgtttta atctggtttt
     1621 gtaatttttt ctttgtttgc tttaacatct cttgtctttc tttagcagtt tttataccca
     1681 aagagcaaag ttttatataa tgtttgattt gttctattgg catacctgaa attctaagcc
     1741 attctatcca ttttacccat tctatatcgc tttttgaaaa atatttcaca ctattttcat
     1801 ctttttgaac aaaaggaaac aaaccttttt tagcccaaaa tcttaaagta tgagcactaa
     1861 tttttgtttc tttttctact ttttttatag tataagccat attttctcct ttatttaaga
     1921 taaaaataaa aatttatttt atttttttgt gataaaataa tagccaaatt attagtttta
     1981 tgctaaaaat aacaaagatt aaaaggaaaa taatgaatag tattaaaatc aaactttccc
     2041 tcattgcaaa tttaattgca atttttgcct taattgttct aggtattgta agtttttatt
     2101 ttacaaaaac ctcactatat gaaagcactc ttaaaaatca aactgaccta cttaaagtca
     2161 cacaatctac cgttgaagat ttccgttcca caaatcaatc ttttactaga gctttagaaa
     2221 aagatatcgc gaacttacct tatcaatctt taatcactga agaaaatatt attaacaatg
     2281 ttggtccaat attgaaatat tatcatcata gtataaatgc actaaatgtt tatttaggtt
     2341 taaacaatgg aaaagtttta cttagtcaaa aatctaatga tgcaaaaatg cctgaattac
     2401 gtgatgattt agatataaag acaaaagatt ggtatcaaga agctttaaaa acaaatgata
     2461 tttttgttac accagcatat ttagatacag ttttaaaaca atatgtaata acgtattcta
     2521 aagctattta taaagatggt aaaatcatag gggtactggg tgtcgatata ccatcagaag
     2581 atttgcaaaa tttagttgca aaaacccctg gaaatacttt tttatttgat caaaaaaata
     2641 aaatatttgc agcaaccaat aaagaattat taaatccatc cattgatcat tctcctgttc
     2701 taaatgcata taaactcaat ggtgataaca acttcttctc ttataagtta aataatgaag
     2761 aaagacttgg agcttgtact aaagtctttg cttatacagc ttgtattacc gaaagcgctg
     2821 atattataaa taaacctatt tataaagctg catttattca agccattgtt gtcattattg
     2881 tagtagtatt tagcgtcatc ctcctttatt tcatcgtatc aaaatacctc tccccacttg
     2941 cagctatcca aacaggttta acttcattct ttgattttat caactataaa acaaaaaatg
     3001 tttctactat agaagtaaaa agcaatgatg aatttggaca aatctcaaat g
//
LOCUS       DAPIWQ010000162         2988 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.164, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000162 DAPIWQ010000000
VERSION     DAPIWQ010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2988)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2988)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2988
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.164"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            96..326
                     /locus_tag="RJ267_001655"
     CDS             96..326
                     /locus_tag="RJ267_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389487.1"
                     /translation="MFDEKIINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIYKKIEAVLGR"
     gene            316..558
                     /locus_tag="RJ267_001656"
     CDS             316..558
                     /locus_tag="RJ267_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389488.1"
                     /translation="MADNLKQVIVNVNAKDFIVKCSEEFANFLEDDIALISGGTKKIE
                     LKRFVDAFVKKSYENYILERELKKLIKAINEELPTK"
     gene            552..992
                     /locus_tag="RJ267_001657"
                     /pseudo
     CDS             552..992
                     /locus_tag="RJ267_001657"
                     /inference="COORDINATES: protein motif:HMM:NF019575.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
     gene            974..2827
                     /locus_tag="RJ267_001658"
     CDS             974..2827
                     /locus_tag="RJ267_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HDV7389489.1"
                     /translation="MQRSDIRYYELAICGLYLDNLTFHSFDEIKPLTQVLVDLKTKKN
                     LKAIVLKECQKPDFKTVEIKEITEYFLTPLQFELANFIVYYYASKLGFVLGFFETSPK
                     YECHKMFFKDTPKLSNQQQNALSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQ
                     ALLLMPEIALTPQMQKRLEVYFKDNFFLWHSKISKKKKQEYLERFCKGEVLLVAGARS
                     ALFLPFRNLGLIVVDEEHDNSYKASNQPFINARDLALFLGQKNNIQVILGSATPSLTS
                     FYKQKSFRLKGTFFESKKHFLYDENELGVTPMLLGELQKSLENQKQAIIFLPTKANFR
                     QIVCKDCGQTIKCPFCSIAMSLHKKRNVLKCHYCNYTSLIEQNCPSCQGVMLEARKMG
                     TAELQELLQETLPLARIAKFDSDEITSIRKLNAILKDFNENKIDILIGTSMLAKGHDY
                     HSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKGEARVLLQTKNRAFFEKY
                     IEDYDAFLKDELENRKDLYPPFKRLLRILIEDKDQQSSQKLCEKLAYQFKNIKQVELV
                     GYGICGVEMLHGKYRFYLLLRSENHKALVAIENYILQFKNVSADIDPIDFV"
     gene            complement(2837..>2988)
                     /locus_tag="RJ267_001659"
     CDS             complement(2837..>2988)
                     /locus_tag="RJ267_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HDV7389490.1"
                     /translation="IDYFIKNKSLVYTFFNIFENDLNHLKQKFPNIINSWTYYKEFEK
                     IYKDK"
BASE COUNT         1095 a          358 c          510 g         1025 t
ORIGIN      
        1 ttaattgaca ataaaaacct aaatttaaat ttttttctgc tacaatatca aataatattt
       61 tccataaatt acaaattttt taagaaggca aaaatatgtt tgatgaaaaa ataatcaata
      121 ctatgacaga taaagtaaat gaactcattg aaaaatataa cgaagtttgc gaagccaatg
      181 aggctttaag aaatgagctt gtaagcgtta aagcacaaaa tgaagcaaaa agtaatcaaa
      241 tcatgcgttt agaagaagaa cttaaatctc gcaatataga aagcgaagat atttataaga
      301 aaatagaggc tgttcttggc agataatcta aaacaagtca ttgttaatgt taatgcaaaa
      361 gatttcattg ttaagtgcag tgaagaattt gcaaattttt tagaagatga tatcgctttg
      421 atttctggcg gtactaaaaa aatagaactt aaacgctttg tagatgcgtt tgttaaaaaa
      481 agttatgaaa attatatttt agaaagagaa cttaagaagc taataaaagc aatcaatgaa
      541 gaactcccga caaaatgaat aaagctttta ctctgcttga gcttgttttt gtgattttga
      601 ttttgggaat tttatcaagc ttatctttat cttttatcaa tactacaaaa gatgaggtta
      661 aaattttaaa attaaaaatg gactatgaaa tgctaagctc agctcttgct ttaatgcgta
      721 gtcaaatgag acttaaaaat ttaaattttc cagaaatttt agataatgca caaaacaatc
      781 aagccaaaga aaaactcttt tattgtttaa atgattgtga ttattctttg cttgatacac
      841 ctatttattc tgattttaaa tcttggataa aaataggtaa aaatcactat agatttgcat
      901 taaacgccaa agagatggtt gaatttattt atgattctaa agaaggtttg ttaaagtgta
      961 taggaagttc tagatgcaaa gatctgatat aagatattat gaacttgcaa tttgtggttt
     1021 gtatttggat aatttaactt ttcatagttt tgatgaaatc aaacctttaa cacaagtatt
     1081 agtggattta aaaactaaaa aaaaccttaa agctatcgtg cttaaagaat gtcaaaaacc
     1141 tgattttaaa accgtagaaa ttaaagaaat tacagagtat tttctaactc ctttgcagtt
     1201 tgaattggca aattttattg tttattatta tgcttcaaaa cttggttttg ttttgggttt
     1261 ttttgaaact agtcctaagt atgaatgtca caaaatgttt tttaaagata ctcctaaact
     1321 aagcaatcaa caacaaaatg ccttaagttt tcttcaaaaa gaaaataatt ccttgctttt
     1381 tgctgatacg ggtagtggca agactgaaat ttatatttct ttgataaaag agtgtttaga
     1441 acagggtaag caagctttgc ttttgatgcc agaaatcgca cttactccac aaatgcaaaa
     1501 gcgtttagaa gtgtatttta aggataattt tttcctgtgg cattctaaaa tttcaaagaa
     1561 aaaaaagcaa gaatatttag agcgtttttg caagggagaa gtgcttttag tagcgggtgc
     1621 aagatcggct ttgtttttac cttttagaaa tttaggactt attgtagtag atgaagaaca
     1681 tgataattct tataaggctt ctaaccagcc ttttatcaat gcaagagatt tagcactttt
     1741 tttgggtcaa aaaaataata ttcaagtgat tttaggttct gcaaccccat ctttaacgag
     1801 tttttacaag caaaagagtt ttagacttaa gggtactttt tttgaaagta aaaaacactt
     1861 tttatatgat gaaaacgaat tgggcgtaac tcctatgctt ttgggcgagt tgcaaaaaag
     1921 cttggaaaat caaaaacaag ctatcatttt tttgcccact aaggccaatt ttagacaaat
     1981 tgtgtgtaaa gattgtgggc aaactataaa atgtcctttt tgctctattg ctatgagttt
     2041 gcacaaaaaa agaaatgttt taaaatgtca ttattgtaat tacacttctt taatagagca
     2101 aaattgtcct agctgccaag gtgtgatgct agaggctagg aagatgggca cagcagaatt
     2161 acaagaactt ttgcaagaga ctttgccttt agcaaggata gctaaatttg atagtgatga
     2221 gattacgagt attcgaaagc ttaatgctat tttaaaagat tttaatgaaa ataagatcga
     2281 tatacttata ggaacttcca tgcttgctaa aggacatgat tatcatagtg tagatttaag
     2341 cgttatttta ggacttgatg agtatttgtt gcgtcctagt tttagagcga gtgaagaaac
     2401 tttagcttta gctatgcaag ttgctggtag ggcagggcgt aaaggtgaag caagagtgct
     2461 tttacaaaca aaaaatagag ctttttttga aaagtatata gaggattatg atgctttttt
     2521 aaaagatgag ttagaaaata gaaaagatct ttaccctcca tttaaacgcc ttttaagaat
     2581 tcttatagaa gataaagatc aacaatcctc acaaaagctc tgcgaaaaac ttgcctatca
     2641 atttaaaaat atcaaacaag tagaattagt aggctatgga atttgtggag ttgaaatgct
     2701 gcatggaaaa tatcgttttt atttattgct tagaagtgaa aatcacaaag ctttagtggc
     2761 aattgaaaat tatattttgc aatttaaaaa tgtaagtgcg gatattgacc ctattgattt
     2821 tgtgtaagtg atataattat ttgtctttat atattttttc aaattcttta tagtatgtcc
     2881 aagagttaat tatattggga aatttttgct ttaaatgatt tagatcattt tcaaaaatat
     2941 taaaaaaagt gtaaacaagt gatttatttt ttataaaata atctatta
//
LOCUS       DAPIWQ010000163         2978 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.165, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000163 DAPIWQ010000000
VERSION     DAPIWQ010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2978)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2978)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2978
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.165"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            101..1165
                     /gene="mqnE"
                     /locus_tag="RJ267_001660"
     CDS             101..1165
                     /gene="mqnE"
                     /locus_tag="RJ267_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HDV7389491.1"
                     /translation="MKNLITKLENEERLNQEEANALWDLDLFTLGKYAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVH
                     IVSAHNKDTTWQWYLEIFKMIKEKYPNLHVKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEVRKKICHGKVSSENWLKIHKLWHEKSKQSNATMLFGHIEER
                     HHRIDHMLRLRDLQDQTGGFNAFIPLVWQRDKSFIQTDKIMDSEEILKTIAISRLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTSLKTFIDMI
                     KTSNLIPVERDSLYNELKTY"
     gene            1175..2494
                     /locus_tag="RJ267_001661"
     CDS             1175..2494
                     /locus_tag="RJ267_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDV7389492.1"
                     /translation="MSFFKLKENNTSFKTEVIAGLTTFLAMVYIIPVNSSIVGNTGMP
                     IEALITATALITIVASAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQNIAWQSALGAV
                     FISSIIFLILSFTHFRLWVIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLV
                     SIGNFKSPHVLFGIFTLALIIFFWAIKLRGAFILGVLASSIIAWIFHLDNASFPVQIF
                     SWPNFSMENGLGAIFLQLDIKSALNITMIPIILTFFITQLFDSIGTITGVGERGKIFD
                     DPKNGEKKLSKTLMADATGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPVLVMVGILMFMEVKNIDFKDSAIAVASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLLSLGNFLLMALQ"
     gene            2508..2951
                     /locus_tag="RJ267_001662"
     CDS             2508..2951
                     /locus_tag="RJ267_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HDV7389493.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKEDFNPDALLAIARGGMSLGHSLA
                     VALKTRQLFALNSIHYDNTKKLDTIEIFNIPDLSKHKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKITTIFYKKTALLEPDFKVKEATEWVDFYWDINLD"
BASE COUNT         1032 a          460 c          508 g          978 t
ORIGIN      
        1 taacaaaaat atcttttatt ttggcttttt ctataaactc tttttcagta agcaaaaatt
       61 ataatgcttt atttaaaaac agcaaaagag taaaattaaa atgaaaaatt taatcaccaa
      121 actagaaaat gaagaaagat taaaccaaga agaagccaat gcactttggg atctagatct
      181 ttttacctta ggcaaatacg ctcacaaaaa acgcactaaa cttcatggaa aaaaagtcta
      241 ttttaatatc aatcgccata tcaacccaac taatatctgt gcagatacct gtaaattttg
      301 cgccttttca gcgcaccgaa aaaatcctaa tccttatttg atgactcatg aagaaatcat
      361 gaaaatcgtc gatgaaaccg taaaacgaga aaccaaagaa gtgcatatcg tttcagctca
      421 caacaaagat acaacttggc aatggtattt agaaattttt aaaatgataa aagaaaaata
      481 tcctaatctt catgtaaaag ctatgactgc tgctgaaatt gattttttac atcgtcgttt
      541 taaaatgagt tatgaagaag tgatagaaaa aatgcttgaa tacggcgttg attccatgcc
      601 aggtggtgga gctgaaattt ttgatgaaga agtgcgtaag aaaatttgtc atggaaaagt
      661 tagcagtgaa aattggctta aaattcataa actttggcat gaaaaaagca agcaaagtaa
      721 tgctaccatg ctttttggac atatagaaga aagacatcac aggatcgatc atatgttaag
      781 actgcgtgat cttcaagatc aaaccggtgg attcaatgct tttatccctt tagtttggca
      841 aagggataaa agctttatac aaactgataa aatcatggat agtgaagaaa ttttaaaaac
      901 cattgccatt tctcgtttag tgcttgataa tatcaaaaat atcaaagctt actgggcaac
      961 aatgacttta aatttagcca tggtagcaca agaatttgga gctaatgatt tagacggcac
     1021 tatagaaaaa gaaagtatac aaagtgcagg tggtgcaaag tccgccaaag gcacaagttt
     1081 aaaaactttt atcgatatga taaaaacttc aaatcttatt cctgtagaac gcgatagttt
     1141 atacaacgag ctaaaaacct actaaggaga aaaaatgagc ttttttaaac tcaaagaaaa
     1201 caatacgagt tttaaaaccg aagttatagc aggacttact acttttttag ctatggttta
     1261 cattatcccc gtaaattcta gcatagtagg aaatacagga atgcctatag aagctttaat
     1321 caccgcaaca gctttaatta ccatagttgc aagtgctttt aatgcttttt ttgccaatac
     1381 tcctgtagct atgagtgtag gaatgggttt aaatgcttat tttacctttg cggtttgttt
     1441 aggtcaaaac atagcttggc aaagcgcctt aggagctgtt tttatttcaa gtattatttt
     1501 tctcatactt tcttttacgc attttcgcct ttgggtaatc cgcaatatcc caaaagattt
     1561 acgccttgca atttgtgcgg gcataggttg ttttattgca tttttaggct taagtcaaat
     1621 gggtgtgata atgcataata aagatacctt agtcagcata ggaaatttca aaagccctca
     1681 tgtgcttttt ggaattttca ctctagcttt aatcatcttt ttttgggcta taaaacttcg
     1741 cggagctttt attttggggg tattagcaag ctctattatt gcttggattt tccatttaga
     1801 caatgcaagt tttcctgtgc aaatcttttc ttggccaaat tttagcatgg aaaatggttt
     1861 aggagccatc tttttacaac ttgatatcaa aagcgcctta aatattacta tgatacctat
     1921 aattcttact ttttttatca ctcaactttt tgatagcata ggaactatca caggtgtggg
     1981 tgaaagagga aagatttttg atgatcccaa aaatggagaa aaaaaactaa gcaaaacctt
     2041 aatggcagat gcaacaggat cagccttagg agctatgaca ggcacttcta cagttacagc
     2101 ctttgttgaa agcactacag gggttgaaag cggaggaaga actgggctta cagctttagt
     2161 tgtagctatt tgttttgctt ttacactttt tttactgcca ctttttaaag ccattcctgc
     2221 aaacgcaata taccccgtac ttgtaatggt tggaatttta atgtttatgg aagttaaaaa
     2281 tatagatttt aaagatagtg ctatagctgt agcaagcttt tttactatta tcatgatgcc
     2341 ttttacttac tccatcacca caggttttgc ttttggtttt ctttcttatt tacttgtaag
     2401 aatttttaaa cgcgaatggg ataaaatcaa tcttggcatt atagttttaa gtttattatc
     2461 tttgggtaat tttttactta tggcactaca ataaataagg atatataatg atattttact
     2521 cctatgaaga atttaaagaa gatgtaaaaa ttcttgctaa agaaattaaa gaagatttta
     2581 accctgatgc acttttagct atagcaagag gggggatgag tttaggacac tctttagcag
     2641 tggctttaaa aacgcgtcaa ctttttgctt taaactcaat tcattacgat aatacgaaaa
     2701 aacttgatac tattgaaatt tttaacattc ccgatttaag caagcacaaa aaaattctac
     2761 tcattgatga tatagtagat agtggagaaa gtttagcaga aataaaaaaa gttttgcttg
     2821 aaaaatttcc tcatatagaa cttaaaatta caaccatttt ttacaaaaaa accgctcttt
     2881 tagagcctga ttttaaagta aaagaagcta ctgaatgggt ggatttttac tgggatataa
     2941 atcttgatta aaaatttgct ataattttac ttttaaaa
//
LOCUS       DAPIWQ010000164         2964 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.166, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000164 DAPIWQ010000000
VERSION     DAPIWQ010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2964
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.166"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..1069
                     /locus_tag="RJ267_001663"
     CDS             <1..1069
                     /locus_tag="RJ267_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7389494.1"
                     /translation="AEEINKSADKTGVRATFTVETRGIAAVREGTTSDTFAINGVTIG
                     QVAYEDGDANGALVAAINSVKDTTGVEASIDANGQLLLTSREGRGIKIDGSIGRGAFI
                     NPNMMENYGRLSLVKNDGKDILISGSNLSSAGFGANNFISQASVSLRESKGRFDANIA
                     DAMGFGSANKGVVLGGYSSVSAYMSSTGSGFSSGSGYSVGSGKNYSTGFANAIAISAA
                     SQLSAVYNVSAGSGFSSGSNLSQFAAMKTTAFGVKDETAGVTTLKGAMAVMDIAETAT
                     TNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQ
                     SGSYAMSQANAVQQNVLKLLQ"
     gene            complement(1100..>2964)
                     /locus_tag="RJ267_001664"
     CDS             complement(1100..>2964)
                     /locus_tag="RJ267_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7389495.1"
                     /translation="KNLKALSGFEYNNLRKKLEDLKELREFTFTQGKDNLDINIIKKR
                     NLKKMYQDPIKELEKNLEYFKDFTRYPVLFFYGFGNGILYKILLQNQALKRIIIFEKE
                     LELIFLALNFIDFSKDLSLGRLIILHHDDINLPKMDKVFRLIGDLFYRSYNLHIANDF
                     YEHYKEDILKLNKLNMQIIKNHNLMHGNDPKDALQGIEQFVYNLPSMITHPSYKELLS
                     KRKGISDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVCMLE
                     RDEIVAECFNNDFKDFDKDIIFLVASLVHKKTISYLKKNKRKYILIIKGQPFARCLGL
                     DDYGYINAGMSVSHMAYELAENLGHKNIILIGQDLAYAKDGQTHSQGFIHANLHNGDY
                     ERDLDRFSTTAYGGNGKVQSSEIWTLFRQIFENFIAFSKSKTYNCTEGGARIESAIEK
                     PFKELCEDLLENKKDKKFKKLQVLNTKEQVKLGLKIYQKIKKNMNLSLNFKKECKKVQ
                     KQIHNLTHGKNELSLEQINQNIDKIKEKLSNKKYLFLQEILGPTLHHEQSILTPLYLK
                     DIKDESDKQNKLFAWVYAHEALIENIIELLEVQDKRLKIAILPLLDFLEKKKAL"
BASE COUNT          944 a          436 c          496 g         1088 t
ORIGIN      
        1 agcagaagag atcaataaaa gtgctgataa aacaggtgtt agagctactt ttacagtaga
       61 aactagaggt atagctgcag ttagagaagg aactacttca gatacttttg ctatcaatgg
      121 ggtaactata ggtcaagtag cctatgaaga tggtgatgct aatggagcct tagttgctgc
      181 aatcaattcg gttaaagata ccactggagt tgaagcttca atcgatgcta atggacaact
      241 tttacttact tcaagagagg gaagagggat taaaatcgat ggtagtatag gtagaggtgc
      301 ttttatcaat ccaaatatga tggaaaatta tggtcgttta tctttagtta aaaatgatgg
      361 taaagatatt ttaatcagcg gtagcaatct ttcttctgca ggttttggag cgaataattt
      421 tatctctcag gcttctgttt ctttaagaga atcaaaagga agatttgatg ctaatatcgc
      481 tgatgctatg ggatttggtt ctgcaaacaa aggagttgtg ttaggtggtt attcttctgt
      541 tagtgcctat atgagtagca caggaagtgg attttcttca ggttcaggtt attctgtagg
      601 tagcggtaaa aattattcca caggttttgc aaacgctata gctatttcag ctgcttcgca
      661 actttctgcg gtatataatg tttctgcggg ctcaggtttt tcatcaggat caaatctttc
      721 tcagtttgca gctatgaaaa caactgcttt tggagtaaaa gatgaaacag caggtgttac
      781 cacgcttaaa ggtgctatgg ctgtgatgga tatagctgaa acagccacaa caaatcttga
      841 tcaaatcaga gccgacattg gttcggtgca aaatcaactt caagtgacta taaacaacat
      901 caccgtaact caagtaaacg ttaaagcagc tgaatcaacc ataagagatg tagactttgc
      961 agctgaaagt gcaaattttt ctaaatataa cattcttgca caatcaggtt cttatgctat
     1021 gagtcaggct aatgcagtgc agcaaaatgt tttaaaactt cttcaataat ttcttagatg
     1081 cttttatgca tctaagcttt taaagtgctt ttttcttttc taagaagtct agcaaaggta
     1141 aaatagcgat tttaagtctt ttatcttgaa cttctaaaag ttctatgata ttttctatca
     1201 aagcttcgtg tgcataaacc caagcaaaaa gtttattttg tttatcagat tcatctttga
     1261 tatctttaag atataaaggc gttaatatac tttgttcatg atgtaaagta gggcctaaaa
     1321 tttcttgcaa aaagagatat tttttatttg aaagtttttc tttgattttg tctatatttt
     1381 ggtttatttg ttcgagagag agctcgtttt ttccatgggt aagattgtga atttgttttt
     1441 gaactttttt acactctttt ttaaaattta aggataaatt catatttttt ttaatttttt
     1501 gatagatttt taatccgagt tttacttgtt ctttagtatt taaaacttgt aattttttaa
     1561 attttttatc ttttttattt tcgagtaaat cttcgcaaag ttctttaaaa ggtttttcta
     1621 tagcgctttc tatcctagca cctccttcag tgcaattata agttttactt ttgctaaaag
     1681 caatgaaatt ttcaaaaatt tgtctaaaaa gtgtccaaat ttcagaactt tgaacttttc
     1741 catttcctcc ataagctgta gtgctaaatc tatctaaatc tctttcatag tctccattgt
     1801 gtaaattagc atggatgaaa ccttgagaat gtgtttgccc atctttggca taagctaaat
     1861 cctgacctat gagaatgatg tttttatgtc ctaaattttc agccagttca taagccatat
     1921 gagatacact catgcctgcg ttaatatatc cataatcgtc tagccccaag catctcgcaa
     1981 aaggctggcc ttttatgatt aaaatgtatt ttcttttatt ttttttaaga taagaaatgg
     2041 tttttttatg caccaaagaa gctactagaa aaatgatgtc tttatcaaaa tctttaaaat
     2101 cattattaaa acattcagct actatttcat cgcgttccaa catacaaaca taatcaggtt
     2161 ttataccatg cttagctaaa ataggataag aagaatccgc acaaaaaatt gtagctttac
     2221 tagcatattt ttttaataaa ggaagttgtt tagtaagaga tggtcctgta gaaacaatga
     2281 tagctgtatc acttataccc tttcttttag aaagcaattc tttataacta ggatgggtaa
     2341 tcattgaagg aagattataa acaaattgtt ctatgccttg aagagcatct tttggatcat
     2401 taccatgcat aagattgtga tttttgatga tttgcatgtt gagtttatta agttttaaaa
     2461 tatcttcttt atagtgttca taaaaatcat tagcaatgtg tagattataa gaacgataaa
     2521 acaaatcccc tatcaaacga aaaactttat ccattttagg aagattaata tcatcatgat
     2581 gtaaaataat gagtcgccct aagcttaaat ctttgctaaa atctatgaaa tttaaggcca
     2641 aaaagataag ctctaattct ttttcaaaga tgattattct tttaagtgct tgattttgaa
     2701 gtagaatttt atataaaatt ccatttccaa aaccataaaa aaaaagcaca ggatagcgtg
     2761 taaaatcttt aaaatattct aaattttttt caagctcttt gatgggatct tgatacattt
     2821 tttttaaatt tctttttttt atgatattga tatcaagatt atcttttcct tgagtgaaag
     2881 taaattctct aagctctttt agatcctcaa gttttttgcg taagttgtta tactcaaaac
     2941 cgcttaaagc ttttaaattt ttgt
//
LOCUS       DAPIWQ010000165         2864 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.167, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000165 DAPIWQ010000000
VERSION     DAPIWQ010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2864)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2864)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2864
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.167"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            29..>2864
                     /locus_tag="RJ267_001665"
     CDS             29..>2864
                     /locus_tag="RJ267_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HDV7389496.1"
                     /translation="MHFTLLNEKDFFNPYYRKKQIMQNEFDIFNKALMQYLERLESSQ
                     SENEDYLVANALSPFLTMLNFKTHIKTKQKGKSEIDLSMSKDEFSKDLEVLIEAKKPN
                     SKEFITHTKVNSKALHETILYYFRNREYSFSLKFIIITDFYKFYIFKISEFEELFYKN
                     PSFKKLFEEFCNPNSLFKGNTEEFYKEVAKLIENSKENLKGFLIDLTFLKDKQKSNFK
                     KLASIFKTFHRDFLLSEFNPNDANSLNNAFYKELLYILGLYESKQNSKLIITKSEESK
                     EEQGTFYTAINSKLKEENFETILKLLILWLNRILFLKLIESNLVRFNDDKNLKFLNFK
                     KIPDFDKLSELFFEVLAKEKSTRKKSEFAYLPYLNSSLFEKQSIENTLEISSLSNDLK
                     LFYYKNTVLKDDKCKAKKGQVGLLEYLFEFLDSFDFGSDDEQSEILSQKELISSSVLG
                     NVFEKLNGYKEGSFYTPSFITSYMCKESITKVVLDKFNAQFDLDAKDISELRRSLRKE
                     DKKAQKELLNSIKICDPAVGSGHFLVSALNVMLSIYDELNLFDEEFYLEVQNDEILIT
                     GRKGEFIEYKRPSTPKDKAHLIQQELFHTKKDIIENNLFGVDINPNSCEITKLRLWIE
                     LLKHSFYQSFDDENYHDLKTLPNIDINIKCGNSLVSYFETGKSLNHYPNIKERINKYK
                     RIVKDYKEGFYTDKSHINQEIKNLKISFKNFCFADKFKKEMKGFNDKCEKYSKKYGNF
                     LAINDENLKFFVSANLTLFDFDEKEATKEFANLKKEYDNIFNLESNHPFEWRFEFPEI
                     LDDDGNFKGFDLIIGNPPYIKENDNKDLFTNTKKLRTYQGKMDIWYHFVGRGFDILKN
                     NGYLAFIATNNWVTNSGAKKLRNIVLEESQILSLVDFSSFMVFDSASIQTMIMQFQKI
                     KPPKNYEFHFAKITTQTPIYEDVINLLKNEK"
BASE COUNT         1131 a          424 c          430 g          879 t
ORIGIN      
        1 tacaaaatat tttttataaa ggttaaaaat gcatttcact ttgctaaatg aaaaagattt
       61 tttcaaccca tactaccgca aaaagcaaat catgcaaaat gaatttgata tatttaacaa
      121 ggctttaatg caatatctag aaagacttga aagttcgcaa agtgaaaatg aagattatct
      181 tgtagctaat gcacttagtc catttttaac catgttaaat ttcaaaactc acatcaaaac
      241 caagcaaaaa ggcaaaagtg agatcgactt atccatgtct aaagatgagt ttagtaaaga
      301 cttagaagtt cttattgagg ctaaaaagcc aaattcaaaa gaatttatca ctcatacaaa
      361 ggtaaattct aaagccttac acgagactat tttatattat tttagaaata gagagtatag
      421 ttttagctta aaatttatta tcatcacaga tttttataaa ttttacattt ttaaaattag
      481 tgagtttgaa gagctttttt ataaaaatcc aagttttaaa aaactttttg aagaattttg
      541 taatccaaat tcacttttca aaggtaatac tgaagaattc tataaagaag tagccaaact
      601 catagaaaat tccaaagaaa acttaaaagg ctttttgatt gacttgacgt ttttaaaaga
      661 caaacaaaaa tcaaatttta aaaagctagc aagtattttt aaaacttttc atagagactt
      721 tttgctaagt gagtttaacc ccaacgatgc aaattcactc aacaacgctt tttacaaaga
      781 gcttttatac atcttagggc tttatgagag caaacaaaac tcaaaactca tcatcacaaa
      841 aagcgaagaa agtaaagaag agcaaggaac tttctacacc gctataaact ctaagctcaa
      901 agaagaaaat tttgaaacca tcttaaagct tttgatctta tggcttaatc gcattttgtt
      961 tttaaagctt atagagtcaa atttggtgcg ttttaatgat gataaaaatt tgaaattttt
     1021 aaatttcaaa aaaatccctg attttgacaa gcttagcgaa cttttctttg aagtcttagc
     1081 caaagaaaaa agcacgcgaa agaaaagcga atttgcttat ctgccttatt taaattcttc
     1141 tttgtttgaa aaacaaagca tagaaaacac gcttgaaatt tcaagcttaa gcaatgactt
     1201 aaagcttttt tactataaaa acaccgtgct aaaagatgat aaatgcaagg ctaaaaaagg
     1261 acaagtgggg cttttagaat acttgtttga atttttggat agttttgatt ttggtagcga
     1321 tgatgagcaa agcgaaattt taagccaaaa agaactcata agttcaagtg ttttaggaaa
     1381 tgtgtttgaa aaactcaatg gctacaaaga aggaagcttt tacacgccaa gctttatcac
     1441 ttcttatatg tgtaaagaaa gcatcacaaa agttgtgctt gataaattca acgctcaatt
     1501 tgatcttgat gctaaagata taagcgagtt aagaagatct ttaagaaaag aagacaaaaa
     1561 agcacaaaaa gagcttttaa actctataaa aatttgcgat cctgcggtgg gaagcgggca
     1621 ttttttggtt tctgctttaa atgttatgtt aagcatttat gatgagctaa atctttttga
     1681 tgaagaattt tatctagaag tgcaaaacga tgaaattctc atcacgggta gaaaaggcga
     1741 gtttatagag tataaacgcc caagtacgcc taaagataaa gcccatctta tccagcaaga
     1801 actttttcat accaaaaaag acatcataga aaacaacctt tttggagtcg atatcaaccc
     1861 taactcatgc gagatcacca agctaaggct ttggatagag cttttaaaac atagctttta
     1921 tcaaagcttt gatgatgaga attatcacga tcttaaaacc ctgccaaaca tcgatataaa
     1981 cataaaatgc ggaaattctt tggtatctta ctttgaaaca ggcaaaagcc taaaccacta
     2041 tcctaacatc aaagaacgca ttaacaaata caaacgcata gtaaaagact ataaagaagg
     2101 cttttacaca gataaaagcc acatcaacca agagataaaa aatctcaaaa tttcttttaa
     2161 aaatttctgt tttgcagata aatttaaaaa agaaatgaaa ggctttaatg ataaatgcga
     2221 aaaatactct aaaaaatacg gaaatttctt agctataaat gatgaaaatt tgaaattctt
     2281 tgttagtgcg aatttgactc tttttgactt tgatgaaaaa gaagccacaa aagaatttgc
     2341 aaatcttaaa aaagaatacg acaatatctt caacctagaa agcaatcatc cttttgaatg
     2401 gcgttttgaa ttccctgaaa ttttggacga tgatggaaat ttcaaaggct ttgatctcat
     2461 catcggcaat ccaccttata taaaagaaaa tgataataaa gatcttttta ccaatacaaa
     2521 aaagttaaga acttatcaag gaaaaatgga tatttggtat catttcgtag ggcgtggatt
     2581 tgatatactt aagaataatg gatatttagc atttatcgct acaaataatt gggttacaaa
     2641 ttcaggggct aaaaaactac gcaatatagt tttagaagaa tctcaaattt taagccttgt
     2701 tgattttagt tcttttatgg tgtttgattc tgcaagcata caaactatga taatgcaatt
     2761 tcaaaaaata aaaccgccta aaaattacga atttcatttt gctaaaatca caacccaaac
     2821 tccaatttat gaagatgtta taaatctttt aaaaaatgaa aaaa
//
LOCUS       DAPIWQ010000166         2860 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.168, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000166 DAPIWQ010000000
VERSION     DAPIWQ010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2860)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2860)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2860
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.168"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            314..697
                     /locus_tag="RJ267_001666"
     CDS             314..697
                     /locus_tag="RJ267_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA transfer protein"
                     /protein_id="HDV7389497.1"
                     /translation="MKKTKQVNIRLTLEEYNLLTEKAQNHGLTLSRYLRDLSMNYPIT
                     CIIDQKVAHDVLNIAGDIGRLGGLFKHWLVRNEDNKANFSNKRSYEDIDEIVDQILDL
                     QILLKEQAKRIIQNDNQKDSKQKTE"
     gene            660..2819
                     /locus_tag="RJ267_001667"
     CDS             660..2819
                     /locus_tag="RJ267_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HDV7389498.1"
                     /translation="MIIKKIPSKKQNKSSFKNLSNYILDKDNNNAKVLVDYMLDKNNE
                     MDKVEGYHFTNCSFDNDEDNINEIINTQKLNTTTKQDKTLHLVVSFQEDEKPTLEILQ
                     AIEEEIAKSLGMSDHQRLSVIHSNTNNLHIHIAINKINPRTLKVVNPYNDAKILQETA
                     MKLEKQYNLKLDNHISQKDKQSNKYNIHTMNCNFETWVKEKLSKQVDLMLKDEKTTFK
                     DIKQLLAKYDLEFRERRKGFVIASKSEKLFCKASSIHRELSKQALEKRFKELDLKQEK
                     ENTQNIEEEKREIKERYQRPNKETSKALWEKYLRIENEKKAELDKELRMLKLRRNEFK
                     TSIPSMKFNKNTFAHVKNQRMIFKNKQKELYQKYKRVSYRDFLINESLSGNEEATRAL
                     RRSKTKINENENTLSSTQEKPKIFENVDYITKEGYAVYKSGFNKAIDKGEMLKVSLIQ
                     NGKDDKEFLLNSLLMAIDRFGNHLNITGDENFKRNILEVANDYNLNVSFTDPQMQKIQ
                     ESNNDKRQEMKSRKILKNIVELKIKLIKDEPGIKENIKEKELKALKAILKKVSNTTLS
                     VFEAELKKIGFSSDEINSMDIQSIDTQIEGFVVNSINKEGLIAMNEEIKQALIDDKEI
                     KKFEKFEHLFLNTNKITDIAKGFYTNRKIDADEYVKRFSMQESKISKVANVISMLSDK
                     NIDIMEKYAKKLEKDLKYQYLKKAEVIKSNDINLNNF"
BASE COUNT         1252 a          320 c          431 g          857 t
ORIGIN      
        1 atcttgcttt gctttttcat aaagtatttt agaaactaca tagcctttat tatattcttg
       61 ttttaagtat tctaaattag cgaagaattc tatttttgca aaacctcttt tcattatgca
      121 acctttttaa ataatatatt ataagatatt ttagtatatt ttagcaaatt atagtgtatt
      181 ttagtaaaat gattaaaatg tttgtaaaaa tagcttatat tttgttataa ttgcttggag
      241 taataagaca ggatatgctt ttgctataca aaagcaaagt tttatcgcta aagctctaaa
      301 ataggacgcc aaaatgaaaa aaacaaaaca ggtaaatatt agactgactt tagaagaata
      361 taacctttta acagaaaaag cacaaaatca cggcttaaca ctttcaagat atttgcgtga
      421 tttatcgatg aattatccta ttacttgcat aatagatcaa aaagtcgcac acgatgtttt
      481 aaatattgcg ggtgatatag gaagattggg cggacttttt aaacattggt tggttagaaa
      541 tgaagataat aaagccaatt tttcaaataa aagatcttat gaagatattg atgagattgt
      601 ggatcaaatt ttagatttgc aaatactctt aaaagaacaa gccaaaagga taatacaaaa
      661 tgataatcaa aaagattcca agcaaaaaac agaataaatc aagttttaaa aatttatcaa
      721 actatatttt agacaaagac aataataatg caaaagtatt ggttgattat atgcttgata
      781 aaaacaatga aatggataaa gtggaaggtt accattttac aaattgttct tttgataatg
      841 atgaggataa tattaacgag attatcaaca ctcaaaagct taataccaca acaaagcagg
      901 ataagacctt gcatttagta gtttcttttc aagaagacga aaaacctact ttggaaattt
      961 tacaagcgat tgaagaggaa atcgcaaagt ctttaggaat gagtgatcat caaagattaa
     1021 gtgtaattca ttctaataca aataatcttc acatacatat cgcaattaat aaaattaatc
     1081 cacgcactct aaaagttgtt aatccttaca atgatgctaa aattttacaa gaaacagcga
     1141 tgaaacttga aaagcagtat aatttaaagt tagataacca tatttcacaa aaagacaagc
     1201 aaagcaataa atataatatc catactatga attgcaattt tgaaacctgg gtaaaagaaa
     1261 agctttctaa acaagtagat cttatgttaa aagatgaaaa gaccactttt aaagacatta
     1321 aacaactttt agctaaatat gatcttgaat ttagagaaag aagaaaaggt tttgttattg
     1381 cttctaagag tgaaaaattg ttttgcaaag caagtagtat ccatagggaa ttatctaaac
     1441 aagctttaga gaaaagattt aaagaattag atttaaaaca agaaaaagag aatacacaaa
     1501 acattgaaga agaaaaacgg gaaataaaag agcgatacca acgaccaaat aaagaaactt
     1561 ctaaagcatt gtgggaaaag tatttaagaa ttgaaaatga gaaaaaagca gagcttgaca
     1621 aagaacttag aatgttaaag cttagacgca atgaatttaa aacctcaata ccatcaatga
     1681 aatttaataa aaacactttt gcacatgtta aaaaccaaag aatgattttt aaaaacaaac
     1741 aaaaagagct ttatcaaaaa tataaaagag tgtcttatag agatttttta attaatgaat
     1801 ccttatcagg aaacgaagag gctacaaggg ctttacgaag atctaaaacg aaaattaatg
     1861 aaaatgaaaa cactttatca tcaacccagg aaaaacctaa aatctttgaa aatgtagatt
     1921 atataacaaa agaaggttat gctgtatata aaagcggttt taataaagcc atagataaag
     1981 gagaaatgtt aaaagtatcc cttattcaaa acggcaaaga tgataaagaa tttcttttaa
     2041 attctttact tatggcgatt gatagatttg gaaatcatct taatattaca ggagatgaga
     2101 attttaaaag aaatatttta gaagtcgcaa atgattataa tttaaatgtg agttttacag
     2161 atccgcaaat gcaaaagata caagaaagca ataatgataa acgccaagaa atgaagtcta
     2221 gaaagatttt aaaaaatatt gttgagttaa aaatcaaact tattaaagat gaaccaggca
     2281 taaaagaaaa tattaaagaa aaagaattaa aagctttaaa agctattctt aaaaaagtct
     2341 cgaatactac actttcggta tttgaagcag aattgaaaaa aataggtttt agttccgatg
     2401 aaatcaattc tatggatata caaagcattg atactcaaat tgaaggtttt gttgtaaatt
     2461 ctatcaataa agaagggctt attgcaatga atgaagaaat aaaacaagct ttaatcgatg
     2521 ataaagagat aaaaaagttt gaaaaattcg agcatttatt tttaaatact aataaaataa
     2581 cagatattgc caagggattt tatacaaata gaaaaattga tgctgatgag tatgtaaaaa
     2641 gattttcaat gcaagaaagc aaaattagta aagtggcaaa tgttatttct atgttaagcg
     2701 ataagaatat tgacataatg gaaaagtatg caaaaaaact tgaaaaagat ttaaaatatc
     2761 aatacttgaa aaaggcagaa gttattaaaa gtaatgatat taatttgaat aatttttaat
     2821 atcacaataa taatattgtg atattattat aatattaatt
//
LOCUS       DAPIWQ010000167         2836 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.169, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000167 DAPIWQ010000000
VERSION     DAPIWQ010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2836
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.169"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            115..1320
                     /locus_tag="RJ267_001668"
     CDS             115..1320
                     /locus_tag="RJ267_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HDV7389499.1"
                     /translation="MKNLLIIGAGGVSRVATVKCAMNSDTFSKITLASRTKSKCDEIA
                     AFIKERLGVQIETAQIDADDSNAVVELIKKTEAQILLNVALPYQDLSLMDACIKAGID
                     YIDTANYEHPDLAKFEYKEQWARNDEFKQAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWENGKWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKRIRFFMTFGQSYLTHMKCLENVGMLGIKPVI
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKDGKDKQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMEELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(1333..2022)
                     /locus_tag="RJ267_001669"
                     /pseudo
     CDS             complement(1333..2022)
                     /locus_tag="RJ267_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881173.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            complement(2091..2753)
                     /gene="sodB"
                     /locus_tag="RJ267_001670"
     CDS             complement(2091..2753)
                     /gene="sodB"
                     /locus_tag="RJ267_001670"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HDV7389500.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNTRPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
BASE COUNT          969 a          435 c          481 g          951 t
ORIGIN      
        1 aatttttttt attttggtga gctcaagtta tgatttagaa gagaaaataa gttttgatat
       61 tatcaatttt tagtttaaat ttgataaaat caaaaaaatt tttgaaggat aggaatgaaa
      121 aatcttttaa tcataggcgc aggtggggta agtcgtgtgg ctactgtaaa atgcgcaatg
      181 aattctgata cttttagtaa aatcacttta gctagtagaa caaaaagcaa atgtgatgaa
      241 atcgctgctt ttatcaaaga gcgtttaggg gttcaaattg aaacggcgca aattgatgct
      301 gatgatagca atgcagttgt agaacttatc aagaaaacag aagcacaaat tttactcaat
      361 gtggctttgc cttatcaaga tttgagttta atggatgctt gtataaaagc agggattgat
      421 tatatagata cggcaaatta tgaacatcct gatttagcta aatttgaata caaagagcaa
      481 tgggcgagaa atgatgagtt taaacaagca ggaattttag gacttttagg aagtggattt
      541 gatcctggtg taactaatgt tttttgtgct tatgcacagc aaaatttatt tgatgaaatt
      601 tcttatatag atattttaga ttgcaatgca ggtgatcatg gctatgcttt tgcgacgaat
      661 tttaaccctg aaatcaatct gcgtgaggtt tctgctaaag ggcgttattg ggaaaatggc
      721 aagtggatag aaacgcagcc tatggaaata aaaatggagt gggattatcc agaagtagga
      781 gtgaaagata gctatttgct ttatcatgaa gaacttgaaa gcttggtaaa aaatatcaaa
      841 ggtttaaaaa gaatacgctt ttttatgact tttggacaaa gttatttaac tcacatgaaa
      901 tgtcttgaaa atgttggaat gctagggatt aaacctgtga tacaccaagg taaagaaatc
      961 attcctatag aatttttaaa aaccttgctt cctgatcctg caagtttagg accacgcact
     1021 aaaggttata ccaatatagg ttgcgtgatt cgtggtaaaa aagatggaaa agacaaacaa
     1081 gtttatattt ataatgtttg caatcatgaa gaatgttaca aagaaactgg cgcgcaagct
     1141 gtgagctata ctacaggtgt tcctgctatg ataggtacga aattaatcgc taaaggaatt
     1201 tggcaaggaa aaggcgtgtt taatatggaa gaatttgacg ctaagccttt tatggaagag
     1261 ctgaattctc aaggacttcc ttggaagatt atcgaaatga ctccaagctt aggagagtaa
     1321 gtgctagagc acttactttt gtcctatata aataaagtgc tccacactgc cttcaaaatt
     1381 atacagatta attaattcat aatctcccca aataaaggtt taaaaggttt aaaatcttct
     1441 tttaattctt ctatgtcttt agtaaagcgt atatatgaag aaccactcaa tctaccactt
     1501 ggacatcctt ttacttcacg caagctatta tccataagtt ctcctctttc atacatacta
     1561 tagcctttat cgctcatcat ggttgcaaat ataatagctc cttcattgca tagttcataa
     1621 aattcttgca cagcttcttt aaaagcttgt tttgtaagat aatataagct ttgatttgca
     1681 aatataaaat ccatttttgt attgaagagt tttttaaagc tagaattagg agatatgatg
     1741 tgaaaatttt tagaatctaa gcaaggatct ttttcccaaa ctttttttaa actaggaact
     1801 atatcaatgc cataaggctc tatacccccc cccggttata tttttaaaat acttagaatg
     1861 cactccattt ccacaaccaa aatcaagtaa ttttccactt gttttgctta gtttgtattt
     1921 taagattctc tcgtaaaatc ttataacatg accatcagga tattgaagtc cataaccttc
     1981 tttgtcatat ttttgagtat atgcagataa agaattatcc atttttgccc ctttttgtgt
     2041 agaatgttga cttaatgtca aaatccattc tagcacaaaa aggattaaag ttattttaca
     2101 gggtgaagtt catttgcata aaagctaact gatcccatgc cttcttttaa agcccattcg
     2161 taagcttttg caacaaattc ccagttaata tgagcataga atttttctaa ataagcaggg
     2221 cgtgtattgc gatgatctac ataataagca tgttcccaaa catctacaac aagtaaagga
     2281 actttatctt cagtaattgg tgtagctgcg tttgaagtac ctacaaattc tagtttttga
     2341 tttttagtat tataaactaa ccaaaaccat cctgaaccaa aaactcctgt agcgcctttg
     2401 ataaattcag ctttgaaatt ttctaaagat ccaaattctt tttctagtgc cgcttgtaaa
     2461 ttagcatcta tactttgaca tgaaccgcca cagccacagc ctgtacttgg cttaatgcaa
     2521 tcaaaataaa aatcatgatt ataaacttga gctgcgttat taaatacgcc cccatttgaa
     2581 gttttgataa tacttacaag atctttacct gcaaattcag tatctttaat aagattattt
     2641 agatttgtaa cataagtatt gtgatgtttt ccatgatgat agctaaaagt ttcagcactc
     2701 aaaaaatcac caaaagcatt ggtatcataa ggtaattttc ttaattcaaa cataatttct
     2761 cctttatttt tagtttgata ttgaaaatat taccataata atattaaaaa gagtaaaaat
     2821 atcttaaaag cttagt
//
LOCUS       DAPIWQ010000168         2820 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.170, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000168 DAPIWQ010000000
VERSION     DAPIWQ010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2820
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.170"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            2..2062
                     /locus_tag="RJ267_001671"
     CDS             2..2062
                     /locus_tag="RJ267_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family iron permease"
                     /protein_id="HDV7389501.1"
                     /translation="MSIFLSSSAFARVDDYINEANLIKDMLKQSIETYKKGDNLGAKK
                     LSEDAYFQHFENMEGSIGRNIGRKAITMERKFVNLRRMYKDEAPLTQINALIDSLYYD
                     LDEVAPILQNGYRLKAEASDINYDKAKAEKSSLEANAKREADAEALIAQMMGVDKKDL
                     AQSSLTTQAPIPINNDTSKLTDDNASTDLQAAAAMDVRLQFILDNISTKFSQAANAFK
                     EKNYQTSKDFLNDALFSDYRNTKVEILVNKFTKAGNDQKIQQAIRTLIRQINDAKIDE
                     KGLRDGLDNIEEQIFDVFLQIPNSELSSLQISGFNDETKGKDYAKVSNDIKLALDEIL
                     KNYDGFSASIVDDLQGIYLDIFEASGMENKIGAVDSGLKLKIESLFSKSVALIKASTD
                     KKELEATFNDLEQLIASSVDKIQDSTPYSLFIWALGIILREGLEALIIVVAIVSYLVQ
                     SGNKNRLNIAYSALFTGVILSFVTAFGVSWLFKENAGQSRELIEGITMLIAVLLLFYV
                     GFWLLSNAQNKKWTSFIKQGAIDAISNNSAKTLWITVFLAVYREGAETVLFYQALLFD
                     AKTSTDFGAVFGGLGLGILILIVLYFLLKAGAIRIPVKQFFYITSYIIFYMVFVFTGK
                     GIAELIEGKVIIPSLIPMNFEPILWLGIYPYYETLIPQFIVLIMLIIGILITKQISKK
                     GVKS"
     gene            2059..2598
                     /locus_tag="RJ267_001672"
     CDS             2059..2598
                     /locus_tag="RJ267_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HDV7389502.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGDPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
BASE COUNT          980 a          419 c          498 g          923 t
ORIGIN      
        1 tataagtatt tttttatcaa gctcagcttt tgctagggta gatgattata ttaatgaagc
       61 aaatcttatc aaagatatgc taaaacaaag catagaaact tataaaaagg gcgataatct
      121 aggcgccaaa aagcttagcg aagatgcgta ttttcaacat tttgaaaata tggaaggctc
      181 aataggaaga aacataggaa gaaaagctat cactatggag cgtaaatttg taaatttgcg
      241 tcgcatgtat aaagatgaag ctcctttgac acaaattaat gctttaattg atagtcttta
      301 ttatgatctt gatgaagtag ctccgatttt acaaaatgga tatcgtttaa aagcagaagc
      361 aagcgatata aactatgata aggctaaagc tgaaaaatca agcctagaag ccaatgccaa
      421 acgcgaagct gatgcagaag ctttaatcgc acaaatgatg ggtgtagata aaaaagattt
      481 agcacaaagc tctttaacca cccaagctcc tatacctata aataatgata caagcaaact
      541 tacagatgat aatgcaagca ctgatttaca agctgccgct gcaatggacg taagattgca
      601 atttatacta gataatatct ctaccaaatt ttcacaggca gctaatgctt ttaaagaaaa
      661 aaactaccaa actagtaaag attttttaaa tgatgcctta tttagtgatt atcgcaatac
      721 caaagtagaa attttagtaa ataaatttac caaagcagga aacgatcaaa aaattcaaca
      781 agccatacgc acccttatac gccaaatcaa cgatgcaaaa atagatgaaa aaggcttaag
      841 agatggctta gataacatag aagaacaaat ttttgatgtt ttcttacaaa ttccaaattc
      901 agaactttca agtttgcaaa tttcaggctt taatgatgaa acaaaaggca aagattatgc
      961 caaagtttct aatgatatca aacttgcttt agatgaaatt ttaaaaaatt atgatgggtt
     1021 tagtgcttct atagtagatg atttacaagg aatttatcta gatatttttg aagcaagcgg
     1081 tatggaaaat aaaatcggtg ctgtagatag cggcttaaaa cttaaaatag aaagtttatt
     1141 ttccaaaagc gtagctctta tcaaagcaag tacagataaa aaagagcttg aagctacttt
     1201 taatgactta gaacaactca tagccagcag cgtggataaa attcaagatt ctactcctta
     1261 ttcgctgttt atatgggctt taggtattat tttgcgtgaa ggcttggaag ctttgattat
     1321 cgttgtagcc attgtttctt atcttgtgca aagtggcaac aaaaatcgtt taaatatcgc
     1381 ctatagtgct ctttttacag gagtaatttt aagttttgtt accgcttttg gagtttcttg
     1441 gctatttaaa gaaaatgcag gacaaagtag agagcttata gagggtatta ccatgcttat
     1501 agccgtatta ctactctttt atgtgggctt ttggctactt tcaaacgcac aaaataaaaa
     1561 atggacaagc tttatcaaac aaggtgctat agatgctata tcaaacaata gtgcaaaaac
     1621 cctttggatt accgtatttt tagctgttta tagagaaggt gcagaaactg tgctttttta
     1681 tcaagccttg ctttttgatg ctaaaacaag cactgatttt ggtgctgttt ttggcggact
     1741 tggacttgga attttaatac ttattgtttt atattttctt ttaaaagcag gagccattcg
     1801 catacctgta aaacaatttt tctatatcac ttcttacatt attttttaca tggtttttgt
     1861 ttttacaggc aaaggcatag ccgaactcat agaaggaaaa gtcatcattc ctagtcttat
     1921 acctatgaat tttgaaccga ttttatggct tggaatttat ccttactatg aaactttaat
     1981 ccctcaattt atagttttaa ttatgctaat tattggcatt ttaataacaa aacaaatttc
     2041 aaaaaaagga gtaaaatcat gataaaaaaa gttttatcag tagttgctgc agctgcggtt
     2101 attagtacaa atttatttgc aggcgaagtg ccgatcggcg atccaaaaga acttaatggc
     2161 atggaaatag ccgctgttta tttacaacct attgaaatgg agccaagagg tattgattta
     2221 gctgcatctt tagcagatat tcacctagaa gctgacattc acgcacttaa aaacaatcca
     2281 aatggttttc cagaaggttt ttggatgcct tatttaacta tagcttatga acttaaaaat
     2341 accgacacag gtgcaattaa acgtggaact ttgatgccta tggtggctga tgatggtcct
     2401 cactatggtg caaatattgc tatggaaaaa gataaaaaag gtggctttgg cgtaggaaat
     2461 tatgaactta ctttttatat ctcaaatcca gaaaaacaag gttttggacg ccatgttgat
     2521 gaagaaacag gtgtgggtaa gtggtttgaa ccttttaaag tagattataa attcaaatac
     2581 acaggcacgc caaaataatt ttacgctcgg attttccgag tgtttgaata tttttatttt
     2641 tatttgaaaa attaaaataa caatgtttaa agagtaaatt atgagtatat attttgtgca
     2701 ttttcttatc agtgttttac cgctaagtat tttaatggcc tttatcactc ctaataaaaa
     2761 atatattttt aaaagttttt tcgtagtttt tttgggcttt ttatttggat attttgcttt
//
LOCUS       DAPIWQ010000169         2737 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.171, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000169 DAPIWQ010000000
VERSION     DAPIWQ010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2737
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.171"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..390
                     /locus_tag="RJ267_001673"
     CDS             <1..390
                     /locus_tag="RJ267_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7389503.1"
                     /translation="ILSNDFNNIQNIYLNLNKKENDLNLAIRKIDEFKNKLENIKQMQ
                     DLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQEN
                     ALIKNILPLEEKLKERKLDKWMERVRR"
     gene            387..2246
                     /locus_tag="RJ267_001674"
     CDS             387..2246
                     /locus_tag="RJ267_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7389504.1"
                     /translation="MREELFLKNTQALFEVDEFLACTLRSLKYLTFALIQDENGINFK
                     KDDIFLYENPNKELLENLTLFKTEYNKYPVLFFYGFGNGMFYKTLCKNKQHKHIIIFE
                     DNLEILTLAFHLFDFSEELKKEQLILFYTPNINTAQLTTLFTYEIIQKSVKIFNLFIH
                     NDFYQQFYSTQIQNINTQLIEMIRFIVLNKGNDPHDSLVGIKHTLDNLPKMLNHGIFQ
                     EFLKERRAKVENAIIVSTGPSLIKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYV
                     CMLERDDIVSKCFDNDFGDFNKGILFILASVVHKEVLDFLEKDQRAYMLVHRPLNFAA
                     SLKLDEYGYLGVGHSVSNMIYELAGALRFENIIFIGQDLAYGEDGSSHPKEHIHGSQG
                     EEIRGEKYTLAYGGKGKVRTQLTWNLFRQAFEKDIFWAKEKLNITTYNCTEGGARIEG
                     TIEKPFLWACENLLDKDLNKPFDFPKFLDKKLAKEKLEKTKKYLQKSILESKEFIKKT
                     QTQLQKLRYTLEKNDKNFQTLEKIKNDLLNLFKEFKKLKLFNELCQAIYFHNECEILK
                     FEVLNTNKQKENLIDFLKIQHNWFIQGLGYLDTQNKTIEKSLENWNFDDIIKK"
     gene            2259..>2737
                     /locus_tag="RJ267_001675"
     CDS             2259..>2737
                     /locus_tag="RJ267_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7389505.1"
                     /translation="MTFTPTQKELFNKNIEALNNILLKESLKEIKSSKFELILGKDNL
                     DINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFK
                     ALLQNKNHQHIIVFEKDIEIIWVIFHILDFSNELQNARLMVLENDKLQTQDYTELCSS
                     "
BASE COUNT         1117 a          345 c          375 g          900 t
ORIGIN      
        1 atactcagca atgattttaa caatatacaa aatatatatt taaatttaaa caaaaaagaa
       61 aatgatttaa acttggctat tagaaaaata gatgaattta aaaataaatt agaaaatatc
      121 aaacaaatgc aagatttata tgaaatttta caacctctgc gtactcaatt tgaacttaat
      181 cttgctagaa tttatgtttt aaatcctaaa accaaagaag atgcttttaa taaaagtatt
      241 ctttggataa aagaacattt agaatttatg gaattagttt atggacatat taaagcacaa
      301 gaaaatgctt tgattaaaaa tatacttcct ttagaagaaa aacttaaaga aagaaaatta
      361 gataaatgga tggaaagggt gagaaggtga gagaagagct ttttttaaaa aatactcaag
      421 ctttgtttga ggtcgatgag tttttagctt gtacactgag atcacttaaa tacttaactt
      481 ttgcacttat ccaagatgaa aatggaataa attttaaaaa agatgatatt tttctttatg
      541 aaaatcccaa taaagagctt ttagaaaacc ttactctgtt taaaaccgaa tataacaaat
      601 atcctgtttt gtttttttat ggctttggaa atggaatgtt ttataaaact ttatgtaaaa
      661 acaaacaaca taaacacatt atcatttttg aagacaatct tgaaatttta actttagctt
      721 ttcatttatt tgattttagc gaagaattaa aaaaagaaca actaatactt ttttatactc
      781 caaatattaa tacagcacaa ctcaccacac tttttactta tgaaatcatt caaaaaagtg
      841 taaaaatttt taatcttttt atccataatg atttttatca acaattttat agtactcaaa
      901 tacaaaatat aaatactcaa ctgatagaaa tgatacgatt tatcgtttta aacaaaggta
      961 atgatccaca tgattcttta gttggaatca aacataccct agataatctc cctaaaatgt
     1021 taaatcatgg aatttttcaa gaatttctca aagaaagaag agctaaggtt gaaaatgcta
     1081 tcattgtttc tacaggacca agtcttataa aacaacttcc tttgttaaaa aaatatgcta
     1141 ataaagctac aattttttgt gcggattctt cttatcctat tttagctaaa catggtataa
     1201 agcctgatta tgtttgcatg ctagagcgtg atgatatagt ttctaaatgt tttgataatg
     1261 attttggcga ttttaacaaa ggcatacttt tcatacttgc ttctgtggtt cacaaagaag
     1321 tattagattt tttagaaaaa gatcaaagag cttatatgct tgtacatcgc cctttaaatt
     1381 ttgcagctag tttaaaactt gatgaatatg gatatcttgg agtaggacac agtgtttcca
     1441 atatgatcta tgaactagca ggagctttaa gatttgaaaa tatcattttt ataggacagg
     1501 atttagctta tggcgaggat ggaagttcac atcctaaaga gcatatacat ggaagtcaag
     1561 gtgaagaaat cagaggagaa aaatatacac tagcttatgg aggaaaaggc aaagtaagaa
     1621 cacaacttac ttggaatttg tttcgtcaag cttttgaaaa agatatattt tgggcaaaag
     1681 aaaaactcaa tatcaccacc tacaactgca ccgaaggtgg agcaagaata gaaggaacta
     1741 tagaaaaacc ttttttatgg gcttgtgaga atttacttga taaagattta aataaacctt
     1801 ttgattttcc aaaatttcta gataaaaaac tagccaaaga aaaattagaa aaaacaaaaa
     1861 aatatctcca aaaaagcatt ttagaatcca aagaatttat aaaaaaaact caaactcagc
     1921 ttcaaaagct tagatacact ttagaaaaaa atgacaagaa ttttcaaact cttgaaaaaa
     1981 tcaaaaatga tcttttaaat ctttttaaag aatttaaaaa actcaagctt tttaatgaac
     2041 tttgtcaagc tatttatttt cataacgaat gcgaaatttt aaaatttgaa gttttaaaca
     2101 caaataagca aaaagaaaat ttaatagact ttttgaaaat acaacacaat tggtttatcc
     2161 aaggtttagg atatcttgat actcaaaaca aaaccataga aaaaagttta gaaaattgga
     2221 attttgacga tataatcaaa aaataattag gatttccaat gaccttcacc cctactcaaa
     2281 aagaactctt taacaaaaac attgaggctt taaacaatat tcttttaaaa gaaagtttaa
     2341 aagaaattaa atcaagtaaa tttgaactta tcttaggtaa agataatcta gatatcaatt
     2401 taaaagatac aagtataaaa aataatgggg gggggtataa tgaaaattta ctttatcaag
     2461 atcccattaa agaattgcaa actatgctaa acacctataa tgacaaatac ctactttatc
     2521 ctgtattgta tttttatggt tttggaaatg gaattttatt taaagcttta ttacaaaata
     2581 aaaatcatca acatattatt gtttttgaaa aagatataga aatcatttgg gtgatatttc
     2641 atatcttgga tttttcaaat gaattacaaa atgcaagatt gatggttttg gaaaatgata
     2701 aattacaaac tcaagattat actgaacttt gttcttc
//
LOCUS       DAPIWQ010000170         2698 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.172, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000170 DAPIWQ010000000
VERSION     DAPIWQ010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2698
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.172"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..600)
                     /locus_tag="RJ267_001676"
     CDS             complement(<1..600)
                     /locus_tag="RJ267_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HDV7389506.1"
                     /translation="MDLKSLENNRLYILKRLGILKFLSIIEALLIGFLAFVFIRDALI
                     AVILAVFVGVFFFRFTAKKLKLAQKELQIDALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEILNANKNPSFENEEQIYIK
                     LTDKNFTLNHIFSKENRYLIATLSNPFFIDVKKDLESNFK"
     gene            complement(600..2408)
                     /gene="typA"
                     /locus_tag="RJ267_001677"
     CDS             complement(600..2408)
                     /gene="typA"
                     /locus_tag="RJ267_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HDV7389507.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGSDENPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPVNVRVRKRYLDPTQRKRMEKAKS"
     gene            2543..>2698
                     /locus_tag="RJ267_001678"
     CDS             2543..>2698
                     /locus_tag="RJ267_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389508.1"
                     /translation="MSKPLNEEIFIEFKSDLAERKNEVLLQVLELLETFRSDKNEKMA
                     RISSELTE"
BASE COUNT          838 a          511 c          395 g          954 t
ORIGIN      
        1 tttgaaattg ctttctaaat ctttttttac atctataaaa aaaggattgc ttaaagtagc
       61 gataagataa cgattttctt tagaaaagat atgatttaaa gtgaaatttt tatctgtaag
      121 tttgatataa atttgttctt cgttttcaaa gctaggattt ttgtttgcat ttaaaatttc
      181 gagtaaaatt ccacaaaaaa agcgtttgtt ttcgtccaaa aactgaatat cataaatttt
      241 aaaatcctta aattcaaagc agttttgact tttaaattct ttcaaatcct ttgtaagtcc
      301 tagttttaaa aagtcttttt gacttaaact ttgcttttta aatttcgccc caaaacgacg
      361 caaaaataaa tttaaagcat caatttgcaa ttctttttgt gcgagtttta gttttttagc
      421 tgtaaaacga aagaaaaaaa cacctacaaa aacagctaaa attactgcga ttaaggcatc
      481 tcttataaaa acaaaggcta aaaagcctat aagtaaggct tcgataatgc ttaggaattt
      541 taagattcct aagcgtttaa gtatataaag tctattattt tctaagcttt ttaaatccat
      601 taagattttg ctttttccat tctttttctt tgagttgggt caagatagcg tttgcgaaca
      661 cgcacattta caggtgtaac ttctacaagt tcatcttctt ctatccactc taaagctctt
      721 tcaagactta attttctagg tggcacaagc ttgattgcat catcgcttcc gcttgctctt
      781 acattggtaa gattctttcc tttgatagga ttaacatcta aatcatttgg acgagagtgc
      841 tcacctataa tcataccagt ataaacttta gtttgaggct ctatgaaaag cactccacgc
      901 tcttgaaggt taaacaaaga ataccccaaa gccacgccat tttccataga aattaaagct
      961 ccattgttac gcttttcaac cgcgccgcta aaaggacgga attctaaaaa gctatgattc
     1021 atcacgcctt cgcctttagt atcggttaaa aattggcttc taaaacctat aagtccgcgt
     1081 gctggaattt caaactcaag tcttgtttgt ccatctcctg ttggtgccat ggttttcatt
     1141 tcagcttttc ttttgccaag tttttctatt actgcaccgc taaattcttc aggcacatcg
     1201 ataactaaat gttcaaaagg ttctgtttta actccatctt caacttttac gataacttca
     1261 ggtcttccca tgcaaaactc aaaaccttca cgacgcatat tttcagctaa aatagtgatt
     1321 tgaagttcgc ccctaccgct tactttaaat ttaccttcgc ctgtgctttc gtatttcata
     1381 gcaatattag ttttcatttc agcttctaaa cgttcagcga ttttatttga agttacatgt
     1441 tttccttcag ttcctgctaa tggtccatca tttacagaaa atactatgct taaagtcggc
     1501 tcttcaatgt gtaaaggatc aagtggcata ggattgtttg gatctacaac gctatcaccc
     1561 acatctaaag cttcaaaacc tgctatagct acgatatctc cacttcctgc ttcttcgatg
     1621 tccatttttt ctaagcccat aaagccaatg agttttgaaa ttctaccatt taccttggta
     1681 ccatcagctt ttgcaagcat tacgctttgg tttttcttca caaccccatt gaaaattcta
     1741 gcaatgccta ttttacctac gaaattatca taccccaaag tgaaaacttg aagctgcaaa
     1801 ggattttcat cactaccact tggagctgga acgcgttcaa gtatggtttt aaaaagtggc
     1861 tccatattat cactttcatc gtttagatca agcttagcat aaccattttt tgctgcagca
     1921 taaactatag caaagtcaag ttgctcatcg tttgcatcta gggctacaaa aagatcaaaa
     1981 atttcattga tcactctttc aggatcagca gctggtttgt ctattttgtt gattacaact
     2041 ataggtttaa gccctaaaga taaagctttt ttaaccacga atttagtttg cggcataacg
     2101 ccttcttgag catctactaa aagcaaaact ccatcaatca tttttaaaac gcgttctact
     2161 tctccgccaa aatcagcatg ccctggagta tctatgatgt tgatttttgt acctttgtaa
     2221 ttgatcgctg tgttttttga aagtatggta atgccacgtt ctttttctat atcgttgcta
     2281 tccataacgc gttctgaaat ttgttctctt tcgctaaagg tgcctgattg ttttaataat
     2341 tcatctacca tagtggtttt accatggtca acgtgagcta taactgctat atttctaatg
     2401 ttttccaaat tttcttctcc aaagctaaat ttttaaaagc ttagattata caaaaattta
     2461 acttaaacta caaagcatca aaacttggaa cacttcttgc tttaaagact tgtgaaatta
     2521 aaattttaaa aaggaagtta aaatgtcaaa accattaaat gaagagattt ttattgaatt
     2581 taaaagcgat ttagctgaga gaaaaaatga agttttactt caagttttag aacttttaga
     2641 aacttttaga tcagataaaa atgaaaaaat ggcaagaatt tcaagtgagc ttacagaa
//
LOCUS       DAPIWQ010000171         2649 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.173, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000171 DAPIWQ010000000
VERSION     DAPIWQ010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2649)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2649)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2649
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.173"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            71..574
                     /locus_tag="RJ267_001679"
     CDS             71..574
                     /locus_tag="RJ267_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389509.1"
                     /translation="MKKITLIAYFIIFLSGLWFLFSAIKEYFGILSFILGIALIYFGV
                     INIKKISNKVHKNKTEFETLLNTTNDIFALFGSVMLLVFIIFFTFQNEINIKFFSDQG
                     LVIEDDKKISIYFKSKEVKTLDSSKYEDISTMYSDDYVNVIFKNKDDNSSLILRCDES
                     GCKEEKK"
     gene            571..1113
                     /locus_tag="RJ267_001680"
     CDS             571..1113
                     /locus_tag="RJ267_001680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389510.1"
                     /translation="MRENILIKKLYVDNDIIRDLYKKSLDFAINEREKAIDFLYKKTS
                     KGTYNLLSEIKITLESLENSINENMILFGKFAFFFKNPKYYTRQSHQIIAKTSSCYDL
                     LLGLFYHYGFFQDEKQINDILHKLFEAFKVKSDFSLDFQNESPNAKFKEVKLYFEPHF
                     ATFYDYLEFEKYLYESEKGE"
     gene            1114..1509
                     /locus_tag="RJ267_001681"
     CDS             1114..1509
                     /locus_tag="RJ267_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraM"
                     /protein_id="HDV7389511.1"
                     /translation="MNKKELIEEIAKKHHIILDENDPILAVVSANEIIFDDFLKKIDL
                     LFTKHKTDLESYKFNIFNEIREYSKSNQEALKDILIQAQTNQNTIKPSQEKTEDTKEK
                     KNTNINFWIIAIAGQIIFLLVGLIIGITI"
     gene            1590..2276
                     /locus_tag="RJ267_001682"
     CDS             1590..2276
                     /locus_tag="RJ267_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7389512.1"
                     /translation="MIISVVNEKGGSGKTTLAVNLSARLAEDGDNVLLIDADPQKSTE
                     VFSDMRSQSNLEPLFSNVSKTGVSLGDEIKRMKNAFDSIIVDTGGRDSKEMRKAILSS
                     NIIIIPTIPSQYDVNVLDHMLEIYNEVIDINPNLLALVLVNRVSPNPFLAKELENLKE
                     YINETKKEKGLDRVIMLESVIYERQAYRKAVIEGKSMKEFCDKNDKALNDFENFYQEL
                     LKITNEKLGV"
     gene            2279..2503
                     /locus_tag="RJ267_001683"
     CDS             2279..2503
                     /locus_tag="RJ267_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389513.1"
                     /translation="MGFKKLSSETPKNENDFVNSARGETGNAKTSNAKRNKKLVVNFT
                     EEEYQTLNQEANSIGLSLNSYVRFKIFRKE"
BASE COUNT         1089 a          282 c          381 g          897 t
ORIGIN      
        1 aaaaccttta tagctcttat tttatatttt taatcattat taatggtctt ttatggagtg
       61 caaatcaaag atgaaaaaaa ttacacttat agcatatttt ataatctttt tatcaggatt
      121 atggttttta tttagtgcta ttaaagagta ttttggcatt ttatctttta ttcttggaat
      181 cgcacttatt tattttggtg ttattaatat aaaaaaaata tcaaataaag tccataaaaa
      241 taaaacggag tttgaaactc tacttaatac aacaaatgat atttttgcat tgtttggttc
      301 tgtaatgctt ttagtattta tcatcttttt tacatttcaa aatgaaataa atattaaatt
      361 cttttcagat caaggacttg ttatagaaga tgataaaaaa atatctattt attttaaatc
      421 taaagaagtt aaaacgcttg atagctctaa atatgaggat atatcaacaa tgtatagcga
      481 tgattatgtt aatgttattt tcaaaaataa agatgataat agtagcttaa ttctaagatg
      541 tgatgaaagt ggctgtaaag aggagaaaaa atgagagaaa atatattaat aaaaaaactt
      601 tatgtagata acgacattat aagagattta tataaaaaaa gcttggattt tgctattaat
      661 gaaagagaaa aagccattga ttttttgtat aaaaaaacaa gtaaaggaac atataattta
      721 ttatcagaaa taaaaataac tttggagtct ttagaaaact ccattaatga aaatatgatt
      781 ttatttggaa aatttgcttt tttctttaaa aatccaaaat attatacgcg acaaagccat
      841 caaatcatcg caaagacatc ttcttgttat gatttgctct tgggtttatt ttatcactat
      901 ggtttttttc aagatgagaa acaaataaat gatattttac ataaattgtt tgaagccttt
      961 aaagtaaaaa gcgatttttc tcttgatttt caaaatgaaa gtccaaacgc taaatttaaa
     1021 gaagtcaaat tgtattttga acctcatttt gctacttttt atgattattt agagtttgaa
     1081 aaatatttat atgagagtga aaaaggggag tagatgaata aaaaagaact tattgaagaa
     1141 attgcaaaaa aacaccatat aatcttagat gaaaacgatc ctatattagc agtcgttagt
     1201 gcaaatgaaa tcatctttga tgatttttta aaaaaaatag atctgctttt cacaaaacac
     1261 aaaacagatt tagaaagcta taaatttaat atatttaatg agataagaga atatagtaaa
     1321 agcaatcaag aagctttaaa agatatttta atacaagcac aaacaaatca aaacacaatt
     1381 aaaccatcgc aagaaaaaac agaagacact aaagaaaaga aaaatacaaa tattaatttt
     1441 tggattatcg ctattgctgg tcaaattatt tttcttcttg ttggtttaat catagggata
     1501 acaatataat attattttat tatcttttta atattatatt aatcttatta tgatattatt
     1561 taaatataaa ttaaaagcaa ggtttaatta tgattatatc cgtagtaaat gaaaaaggcg
     1621 gtagtggtaa aactacatta gcagtaaatc tttccgcaag attagccgaa gatggagaca
     1681 atgttttact tattgacgca gatccgcaaa aatcaactga agttttttca gacatgagaa
     1741 gtcaatcaaa cttagaacct ttattttcaa atgtttcaaa aacaggtgtt agtttaggcg
     1801 atgaaattaa aagaatgaaa aatgcttttg atagcattat agttgataca ggcggtagag
     1861 atagtaaaga aatgcgaaaa gctatacttt catcaaatat aattattatt cctacaattc
     1921 caagtcaata cgatgttaat gttctagatc atatgctaga aatttataat gaagtgattg
     1981 atattaatcc taatttatta gctttggttt tagtcaatag ggtttcaccc aatccttttt
     2041 tagcaaaaga attagaaaat ttaaaagaat acattaacga aaccaaaaaa gaaaaaggct
     2101 tagatagagt aataatgctt gaaagcgtaa tctatgaaag acaagcttat cgcaaagcag
     2161 taatagaagg taaaagcatg aaagaatttt gcgataaaaa cgacaaagct ttaaatgact
     2221 ttgaaaactt ttaccaagaa cttttaaaaa taacaaatga aaaactagga gtataataat
     2281 gggatttaaa aaactgagtt cagaaacacc aaaaaatgaa aatgactttg ttaattcagc
     2341 tcgaggagaa acaggaaatg caaaaactag caatgcaaaa agaaataaaa agcttgtggt
     2401 caattttaca gaagaagagt atcaaacctt aaatcaagag gctaattcaa taggtttgag
     2461 cttaaattct tatgtaagat ttaaaatttt tagaaaggag taaaaaaatg tttttagatt
     2521 ttataggcaa agtatttata tttataacaa tatacctaat gactatattt ataataaagt
     2581 ctcatatcgc agtgatcaaa acaggttttc aaagttttga ttttaggttt atttttatat
     2641 ataatatag
//
LOCUS       DAPIWQ010000172         2570 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.174, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000172 DAPIWQ010000000
VERSION     DAPIWQ010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2570
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.174"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..121
                     /locus_tag="RJ267_001684"
     CDS             <1..121
                     /locus_tag="RJ267_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HDV7389514.1"
                     /translation="DYIACETHEYMFDDSEKKIGELKQLINKCNIQNILLDWI"
     gene            141..1160
                     /gene="hddA"
                     /locus_tag="RJ267_001685"
     CDS             141..1160
                     /gene="hddA"
                     /locus_tag="RJ267_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 7-phosphate kinase"
                     /protein_id="HDV7389515.1"
                     /translation="MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCT
                     LIKREDGKIIFDSPDTNSYCEYESKEFLGNDGKLDIFKSIYNRIVKDFTKKPLSFSLH
                     TYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQD
                     QYAATFGGFNFMEFYNNKRVIVNPLRIKNWIASELEARTVLYFTNITREAKDIEEHKK
                     GKLGDEKSLEAMHAIKQDAIKMKEALFRADFGTLAQILGKSWRSKKIISEIVSNDELE
                     RIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALRKEQGYVQDFSFTKEGV
                     KSWRI"
     gene            1148..1753
                     /gene="gmhA2"
                     /locus_tag="RJ267_001686"
     CDS             1148..1753
                     /gene="gmhA2"
                     /locus_tag="RJ267_001686"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HDV7389516.1"
                     /translation="MENLNSYIKGHFADSILVKEQILKDENLITLIKNASLEVIKAYK
                     NGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYEN
                     LFARQVQAQGVKGDVFIGISTSGNSKNILKALELCKQKEIISIGLSGASGGAMNELCD
                     YCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ"
     gene            1741..2415
                     /locus_tag="RJ267_001687"
     CDS             1741..2415
                     /locus_tag="RJ267_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HDV7389517.1"
                     /translation="MQAIILCGGLGTRLKSVIKDVPKPMAPINDKPFLEFIFEYLKKQ
                     GIKEVILAVSYKYEVIQEYFKDEFLGIKIKYSIEKEPLGTGGAIKEALKFIKNEAYVL
                     NGDTFFDIDLSKLKLNGSKICLALKQMNDFDRYGTVNVDRQGFVISFEEKIFKNQGLI
                     NGGIYLLTKDIFNEFDLEKKFSFEEFLQENYEKLKAKAHIFDDYFIDIGVPEDYYNFT
                     TNQSHS"
     gene            2427..>2570
                     /locus_tag="RJ267_001688"
     CDS             2427..>2570
                     /locus_tag="RJ267_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389518.1"
                     /translation="MLNPNSAIERVKNHLAYKLGQTVIEHRHNGGGYIALFKKLYKIK
                     KQHK"
BASE COUNT          964 a          309 c          495 g          802 t
ORIGIN      
        1 tgattatatt gcttgtgaaa cacatgaata tatgtttgat gattcagaga aaaagatagg
       61 ggagttaaag caattgatta ataaatgtaa tattcaaaat attttacttg attggatatg
      121 ataaataaat taggagattt atgaaaacca tacgcacaca aactcctctt cgtctcggtc
      181 tagcaggtgg tgggactgat ataaatttat attgtgataa atatacaggt tatgttttaa
      241 atgcgactat atctttatac atacattgta ctttgatcaa aagagaagat ggaaaaatca
      301 tttttgattc tcctgataca aattcttact gtgagtacga aagtaaagaa ttcttaggaa
      361 atgatggaaa attagatatt tttaaaagta tttataatcg cattgtaaaa gattttacaa
      421 aaaaaccttt gagtttttct ttgcatacct attcggatgt accaagtggt agtggcttgg
      481 gcggaagctc aactttggtt gtaggggtta taaaagcctt tgcagaatgg cttaatctac
      541 ctttaggaga atatgaaatc gctaaacttg cttacgagat agaaagagaa gatttaggca
      601 tagtaggtgg agcacaagat caatacgccg caacttttgg tggttttaat tttatggaat
      661 tttataacaa taaaagagtc attgttaatc ctttgcgtat taaaaactgg atagctagtg
      721 agcttgaagc tagaactgtg ctttatttta caaatatcac aagagaagca aaagatatag
      781 aagagcataa aaaaggaaag cttggagatg aaaaatcttt agaagccatg cacgcgataa
      841 aacaagatgc tataaagatg aaagaagctt tatttagagc cgattttggt actttggcgc
      901 aaattttagg aaaatcttgg cggtcaaaaa aaatcatttc agaaatcgtt agtaatgatg
      961 agcttgaaag aatttataaa cttgctatag ataacggagc ctatagtggc aaaaccagcg
     1021 gagcaggagc tggtggattt atgtttttct tcgtagatcc tactaaaaaa tacaacttaa
     1081 tcaaagcttt aagaaaagag caaggttatg tgcaagattt ttcatttaca aaagaggggg
     1141 ttaaatcatg gagaatttaa attcctatat aaaaggacat tttgcagatt ctattttagt
     1201 aaaagaacaa attttaaaag atgagaattt gataactctt attaaaaatg cttcattaga
     1261 agtcataaaa gcttataaaa atggtaacaa aactttatta gcaggaaatg gtggcagtgc
     1321 tgcagatgca cagcatattg caggggaatt tgtaagtagg ttttattttg atagacccgg
     1381 tatcgcaagt attgcactta ctacagatac tagcatatta acagctattg gtaatgacta
     1441 tggttatgaa aatttgtttg ctagacaagt gcaagctcaa ggtgttaagg gagatgtttt
     1501 tataggcatt tcaacaagtg gaaatagtaa aaatatccta aaagctctag agctttgcaa
     1561 acaaaaagaa atcataagca taggcttaag cggagctagt ggtggggcta tgaatgagct
     1621 ttgtgattat tgtataaaag tgccttcaac ttgcactcca agaattcaag aagcacatat
     1681 tttaataggg catattattt gtgctattgt cgaagaagag cttttcggta agggtttttc
     1741 ttgcaagcaa taatactttg cggtggctta ggaacaagac ttaaaagcgt tataaaagat
     1801 gttccaaaac ctatggcacc gataaatgat aagccttttt tagaatttat ttttgagtat
     1861 cttaaaaagc aaggtataaa agaagttatc ttagcagtat catacaaata tgaagtgata
     1921 caagaatatt ttaaagatga gtttttaggc ataaaaataa aatacagcat cgaaaaagag
     1981 cctttaggaa caggtggagc tataaaagag gctttgaaat ttataaaaaa tgaagcttat
     2041 gttttaaacg gtgatacttt ttttgatata gatttaagta aattaaagct aaatggaagt
     2101 aaaatttgtc ttgctctaaa acaaatgaat gattttgata gatatggcac agtaaatgtt
     2161 gataggcaag gttttgtgat ttcttttgag gaaaaaatat tcaaaaatca gggtttaatc
     2221 aatggtggaa tttatctttt aactaaagat atttttaatg aatttgattt agagaaaaaa
     2281 ttttcttttg aagagttttt acaagaaaat tatgaaaaac taaaagctaa agctcatatt
     2341 tttgatgatt attttataga tattggcgtg cccgaggatt attataattt tacaaccaac
     2401 caaagccatt cttaaaggaa aaacccatgc ttaacccaaa ttcagccata gaaagagtga
     2461 aaaaccattt agcttataaa ctaggtcaaa ctgtgataga acatagacat aacggggggg
     2521 ggtatatagc attatttaaa aaactctata aaatcaaaaa acaacataaa
//
LOCUS       DAPIWQ010000173         2500 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.175, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000173 DAPIWQ010000000
VERSION     DAPIWQ010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2500
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.175"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..731)
                     /locus_tag="RJ267_001689"
     CDS             complement(<1..731)
                     /locus_tag="RJ267_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDV7389519.1"
                     /translation="MFKEVCNTLRMSRTELAEKLGLSKTTIDSWSDSSRISKTAKVAL
                     ELMLENYKLRSTIKNFQDGFASLNSYNLGENMMNNVFSKDHNDLINRINHIFNELKLS
                     EITCSRAMGESNYAKINQILNFKMYPDFDFLEKFALRFKINHNWLLTGEGSPFASDLI
                     KSNFNSQFIKEAEEFDRIYIVTSKNNLDHTRIIVINRNNEFGLYQTYFCIGSNFIMEA
                     RECSDLCDLYEFYQKFKYKISCLEF"
     gene            complement(861..2249)
                     /locus_tag="RJ267_001690"
     CDS             complement(861..2249)
                     /locus_tag="RJ267_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HDV7389520.1"
                     /translation="MSRSIRIFDDEIIAKKVFTKIENASKLPLNYINKNRDKYAKDIK
                     TGKLVSKNMFRKNTEVVVKITSGSKNSQALSKHLDYISRDGNVELITNDFDRYAGEDE
                     ILEVKRIFKNEGSPIPLYKEGAKEKRHTINMVFSMKEHSTTPKEKLQQAVITTLKRMY
                     PNNFFVVAFHNDTDNPHCHVCLKVADKNGKRINPKKADLANLRAEFAKALNELGVEAK
                     ATNKKQREVEINQEFSVKLNANNEINQAPKIKMHYYQVMDFGEANYQFSTDKNAKKSY
                     YVSYKTKKGITTIWGQDLERIVRENKVLRGEYARFKIVGQEEYEIKRKAKINNKWQEV
                     VKTLKKPIWEVSVIGREKDLKQINKAKTTKKYKIIQDKGVNNERDYTKQYRQRVLQEL
                     GNKSTIRRETAQERNSMRILSKQPMVHNTKRTQMLLHINALNQLQQGERGRSDNILRW
                     TSVRNNEIKRDG"
     gene            complement(2249..>2500)
                     /locus_tag="RJ267_001691"
     CDS             complement(2249..>2500)
                     /locus_tag="RJ267_001691"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389521.1"
                     /translation="LLLNSIKNEKLFTNIEIDKFIKTRTEINAIGKNIYQLLKILRSG
                     NSVKINENNLNKTMDNIRDKIDILSDQLGAIIEKNNERI"
BASE COUNT          744 a          399 c          268 g         1089 t
ORIGIN      
        1 ttaaattcta agcaagaaat tttatacttg aatttttgat aaaattcata taaatcacaa
       61 agatcgctac attctctagc ttccattata aaattacttc ctatacaaaa ataagtttga
      121 tataaaccaa attcattatt tcgatttatt acaattattc tagtatgatc aagattattt
      181 ttagaagtga caatataaat tctatcaaat tcttcagcct cttttataaa ttgggagtta
      241 aaatttgatt taataagatc acttgcaaat ggagagcctt cccctgtcaa tagccaatta
      301 tgattgattt taaatcttaa tgcaaatttt tctaaaaaat caaaatctgg atacatttta
      361 aaatttaaaa tttgattgat ttttgcataa ttactttcac ccattgctct tgaacaagtt
      421 atttcactta attttaactc attaaagata tgattaatcc tattaattaa atcattatga
      481 tctttcgaaa aaacattatt catcatgttt tctcctaaat tatatgagtt tagtgaagca
      541 aatccatcct gaaaattctt aatcgtactt ctaagtttat aattttcaag cattaattct
      601 aaggctactt tagctgtttt ggatattctc gaactatcac tccaagaatc tattgtggtt
      661 tttgataatc ctaatttttc agccaattct gtcctactca tcctcaaagt gttacaaact
      721 tctttgaaca taaaaaaact ccttttggaa aataattttt gaaattaaag cataataaaa
      781 taaaaaagtc aagtatatac atattacata atattttata ttttttatgt aatataatct
      841 aatattaatt ctcttataaa ttatccatct cttttaatct cattattcct aacacttgtc
      901 catcgcaaga tattatcgga tcgtcctcgc tctccttgct gtaactgatt gagtgcattg
      961 atgtgcaaaa gcatttgagt tcgttttgtg ttatgaacca taggctgttt ggacaatatt
     1021 cgcatagagt ttctttcttg ggcagtttct cttcggatag ttgatttatt accgagctct
     1081 tgtaagactc tctgtctata ttgttttgta taatctctct cattattcac tcctttatct
     1141 tgtataattt tatatttttt tgttgttttg gctttgttga tctgttttaa atctttctct
     1201 ctacctatta ctgatacttc ccaaataggt tttttaagtg ttttaacaac ttcttgccac
     1261 ttgttattaa tttttgcctt tctttttatc tcatattctt cttgccctac tattttaaat
     1321 cttgcatatt caccccttaa aactttattt tctctcacaa tcctttctaa atcttgtccc
     1381 caaattgtag ttattccttt tttggtttta tagctcacat aataactttt tttggcattt
     1441 ttatctgtgc taaattgata gtttgcttct ccgaaatcca taacttgata atagtgcatt
     1501 tttatttttg gtgcttgatt aatctcatta tttgcattta atttaactga aaattcttga
     1561 tttatttcta cttctctttg ctttttattt gtagcctttg cttcaactcc taactcattt
     1621 aatgcttttg caaattctgc tcttaaattt gctaaatctg ctttttttgg attaattctt
     1681 ttgccatttt tatccgcaac tttcaagcaa acatggcaat gcggattatc cgtatcatta
     1741 tgaaaagcaa ctacaaaaaa attatttgga tacattcttt ttaaagtagt aattacagct
     1801 tgttgtaatt tttcttttgg tgttgtagaa tgttctttca tggaaaaaac catattaatg
     1861 gtatgtcttt tttctttagc accttcctta tataatggaa taggagatcc ttcatttttg
     1921 aaaattcttt taacttctaa aatctcatct tctcccgcat atctatcaaa atcgtttgta
     1981 attaattcta catttccatc acgagaaata taatcaagat gttttgaaag tgcttgagaa
     2041 tttttagaac ctgaagtaat ttttacaacg acttctgtat tttttctaaa catattttta
     2101 ctaacaagct tacctgtttt tatatctttg gcgtatttat ctctattttt attgatgtaa
     2161 tttagtggta gctttgaagc attttctatt ttagtaaaaa cttttttagc aattatttca
     2221 tcatcaaata ttcttatact acgcgacatt aaattctttc attatttttt tctattatag
     2281 ccccaagctg atcggataat atatcaattt tatctctaat attatccata gttttattta
     2341 aattattttc attaattttg acagaatttc cacttctaag aatcttcaat aattgatata
     2401 tatttttacc tattgcattg atttctgttc ttgtttttat aaacttatct atttctatat
     2461 tagtaaaaag tttttcattt tttatggagt ttaatagcaa
//
LOCUS       DAPIWQ010000174         2482 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.176, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000174 DAPIWQ010000000
VERSION     DAPIWQ010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2482
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.176"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(119..454)
                     /locus_tag="RJ267_001692"
     CDS             complement(119..454)
                     /locus_tag="RJ267_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389522.1"
                     /translation="MEKSKKERIEKLSEKTKNLNLDDELYIFVNNIKWGKKANILINC
                     VDLGTNIEFYFSVFFSNKYFSRSGDFNFREYMENSFENNRILAVKFKRSKTGYLNCFN
                     ARIAEVSDL"
     gene            1179..2093
                     /locus_tag="RJ267_001693"
     CDS             1179..2093
                     /locus_tag="RJ267_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389523.1"
                     /translation="MNNEIEIKDLNEINKNNKQQVVYRKDNLSTDCITGEVIERNQII
                     VRKVQTRESFIKLFTENIHYIINLEPQEKTLFFTLLSSVDYKNVVRFDKSMKQNIILD
                     KVLSRAGMYRALNGLIEKKVIFKIDRDFVKSYAGVGSDDCYLFNPNLVGRGSWNDLKN
                     LRHTITREWDFENLEVRENLEIEEEYLGLDEIKNNQKQYQVKEINQEHDETTKVKNTE
                     IVIEEKNNSANNQYSFDKKEEPSINKKVLISNDTQPSLFDENQKEREARLFVEKYAGI
                     LTGGFDPTKSAKELKREKLDKDLEEGRI"
     gene            2096..>2482
                     /locus_tag="RJ267_001694"
     CDS             2096..>2482
                     /locus_tag="RJ267_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HDV7389524.1"
                     /translation="MKKVYLDTNIFLDYFNAERTYHNEAKQLIYFLIANNIQIVFSED
                     MISTIAYLIKKENLNNFTHFLKDISLEKDFNIASFGASVINMACDYYDKYRGDFEDYL
                     QYFCAEKEGCCAIYTMDKNFPNLKIPI"
BASE COUNT         1012 a          286 c          341 g          843 t
ORIGIN      
        1 ggaaaataat caatctttag ctttggaaaa taaagagcct atcaaagtaa aaattgatac
       61 aaaatcaaaa aaagtatttg acgctaaatt tggaaaagat atcaaagaag atgatttatt
      121 ataaatctga aacttctgca attctagcat taaaacaatt caaatagcca gtcttacttc
      181 ttttaaattt aacagctaaa attctattat tttcaaaaga attctccata tattctcgaa
      241 aattaaaatc tccgctccta ctaaaatatt tattactaaa gaaaacacta aaataaaact
      301 ctatatttgt cccaagatca acacaattga taagtatatt tgctttttta ccccacttga
      361 tattattaac aaaaatatat aattcatcat ctaaatttag atttttagtt ttttcactta
      421 atttttcaat tctttctttt ttactctttt ccatttaagt tcctttaaaa atcttaacaa
      481 ttataaaaaa caaagcttaa cgccaaaaat aaaaatgttt aagaaaacta aaaacttaaa
      541 tgattagaaa cctattttac cattacttta agttttaaag aaaaacactc taaacttaaa
      601 aagaaatatt tttatttgta aaaagcttat attatcgata atcaaagcaa ttaaacctta
      661 gtttgaaaac tctacttttc aaatcataac ttctttttgg tgtatatagc aaattgcacc
      721 tgttaaggtg ctataatttg cataaatata gggtgcgggg tgtgcagtcg cctagagcga
      781 caaacgaact tgaccccgcc ctatttgttg taagaagagt aagagacgct tagtctcttc
      841 aaatttgcaa atgagcgtta gcgaaatttg ctgtaaaaaa ttatgtttcc aaataaattg
      901 ggaaaaaatt gctttttttg cttaaatatg tttcattttt cgggaaaatt ggaaattgtt
      961 tttgaatttg taagaataga tatagaagag atagcttaat taaaaatgct tttaaatatc
     1021 tattttatag tgctttgaag cacttttaat ctgtctcatc agtgagacaa agcgtctcat
     1081 cagtgagaca agttagctca cctgtgagac ggattaaagt tactttgtct caaattatga
     1141 tacaatattt tatattttat aaatcagagg aataagatat gaataatgaa atagaaatta
     1201 aagatttaaa tgaaattaat aaaaataaca aacagcaagt agtttataga aaagataatc
     1261 tatctactga ttgtattact ggtgaagtta tagaaagaaa tcaaattatt gttagaaaag
     1321 ttcaaacaag agaaagtttt attaaacttt ttactgaaaa tattcattat attattaatt
     1381 tagaacctca agaaaaaact ttatttttta cattgctttc ttcagtagat tataaaaatg
     1441 ttgtaagatt tgataaatct atgaaacaaa atattatttt agacaaagtt ttaagtagag
     1501 ctggaatgta tagagcttta aatggattaa tagaaaagaa agtaattttt aaaatagatc
     1561 gagattttgt taaatcgtat gctggtgttg gtagtgatga ttgttattta tttaatccaa
     1621 atttagtagg acgtggatct tggaatgatt taaaaaattt aagacatact attactagag
     1681 aatgggattt tgaaaattta gaagttagag aaaatttaga aatagaagaa gaatatctag
     1741 gtcttgatga aataaaaaac aatcaaaagc aatatcaagt aaaagaaata aatcaagaac
     1801 atgatgaaac gactaaagta aaaaatacag aaattgttat tgaagaaaaa aataactctg
     1861 caaataatca atatagcttc gataaaaaag aagagccgag cataaataaa aaagtcttaa
     1921 tctctaatga tacacaacct tctttattcg atgaaaatca aaaagaacga gaagctagac
     1981 tatttgtaga aaaatatgct gggatactta ctggtggatt tgatcctaca aaatccgcca
     2041 aagaattaaa aagagaaaaa ttagataaag atttggaaga aggtagaata taaaaatgaa
     2101 aaaagtttat ttagatacaa atattttcct agattacttc aatgctgaaa gaacttatca
     2161 taatgaagct aagcaattga tatatttttt aattgcaaat aacattcaaa tagttttctc
     2221 tgaagatatg atttctacta ttgcttatct tattaaaaaa gaaaatttaa ataatttcac
     2281 tcatttttta aaagatattt cattagaaaa agattttaat attgcatctt ttggtgcaag
     2341 tgtcattaat atggcttgtg attattatga taaataccga ggagactttg aagactattt
     2401 gcaatatttt tgtgctgaaa aagaaggttg ctgtgcaatt tatactatgg ataaaaattt
     2461 tccaaattta aaaataccta ta
//
LOCUS       DAPIWQ010000175         2435 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.177, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000175 DAPIWQ010000000
VERSION     DAPIWQ010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2435
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.177"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            393..611
                     /locus_tag="RJ267_001695"
     CDS             393..611
                     /locus_tag="RJ267_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDV7389525.1"
                     /translation="MLLNIIIEKDQDGYFARILELEGCVSQGNTYEETLANIKEAGEL
                     YLESLANEEKRIIENKTTSIIPMVLANA"
     gene            604..807
                     /locus_tag="RJ267_001696"
     CDS             604..807
                     /locus_tag="RJ267_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDV7389526.1"
                     /translation="MPELPRMTAKEAEKLLLQNNFLIDRQKGSHRIYKKGLYRMVIPH
                     HIGEILHPKIIKQLFEIIEVAKD"
     gene            811..>2435
                     /locus_tag="RJ267_001697"
     CDS             811..>2435
                     /locus_tag="RJ267_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002835057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7389527.1"
                     /translation="MPKRNTIDTITLGLFSNEDVSIICEDTIKLERGSVAVLSGNSEV
                     GKSFLALKVCANAINDGLKPFFWSVEDKNKAILGRIKNIESFYSFNTAELEFSNELPK
                     INKEPINCLKEELNELADCDLIVLDTFSAFFSTLGFKDQNNQNDVQNFFNILTDIAKS
                     NNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFEKGEDKNSTTYRLLEVLKDNNN
                     INAGEFQKTIKVLQNSSIDEPSIVNLRANSIDSNTLEIINKKDISAVSVNELAKGYVT
                     MNENRGVFYLSSRKLTDTNFYKVFKENDNKIDFKMTGANDSSYVISLKNSLLTQTHRN
                     ILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKNSNNYSWLKQKFTE
                     ISRFAYDLAFTQNVEDKDKKTITQRDKGILMFDSVERITKENGTIVSVFVLTVRREYI
                     KKLETESTLSYDDDLSKILINLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYRFYK
                     ESSIISKQKKEIVKLKDKLIEFGINVYGKGVEFA"
BASE COUNT          944 a          277 c          375 g          839 t
ORIGIN      
        1 aaagttcaaa aattttaatt tttgatttac cttatttaat attatagaat ttaatgaatt
       61 taagaattta ggaattatta catttaagtc aattgttttt ttaaagttct tattttccat
      121 atattctttt cgtaaaaatg tcaaaaatta ttacatttaa gtcaaaaatt attacattta
      181 agtcaatttt atttgaaaat aagaggagta tttaataatt tttgttgact ttaatgtaag
      241 tgtatattac atttaagtca attttatttg aaaaaattct aaaattgcta cctattgaca
      301 tagatgtgat actttggtat aatttatttc gaagattaaa atatttggtt acatttaagt
      361 caatcttatc attttttaat acaaggaatt agatgctatt aaatattatt attgaaaaag
      421 atcaggatgg atattttgca cgcattctag agcttgaagg ttgcgtttcg caaggaaata
      481 cctatgaaga aactttagct aatataaaag aagctgggga gctttattta gaaagccttg
      541 caaatgaaga aaaaagaatt attgaaaaca aaacaacttc aattattcca atggttttag
      601 caaatgcctg aattgcctag aatgactgca aaagaagcgg aaaagctttt attgcaaaat
      661 aattttttga ttgataggca aaaaggcagt catagaatct ataaaaaagg actttataga
      721 atggttattc ctcatcatat tggagaaata ttgcacccta aaatcataaa acaactattt
      781 gagatcatag aagtagcaaa ggattaaaaa atgccaaaaa gaaatactat tgatactatt
      841 acactcggac tttttagtaa tgaagatgtt tctataatct gcgaagatac aattaaactg
      901 gaaaggggct ctgtagctgt attaagtggc aatagtgaag taggcaagtc ttttttagct
      961 ttaaaggtat gtgctaatgc tattaatgat ggcttaaaac cttttttttg gagtgtagaa
     1021 gataaaaata aagcaatttt aggacgcata aaaaatattg aaagttttta ttcttttaat
     1081 actgcggaac ttgaattttc gaatgaactt ccaaaaatca ataaagaacc tataaattgc
     1141 ttaaaagaag aacttaatga gttagcagat tgcgatttaa ttgttcttga tacctttagt
     1201 gcatttttct caacattagg ctttaaagat caaaacaatc aaaacgatgt gcaaaatttc
     1261 tttaatattc taacagatat agcaaaatca aataatcaag ctatcttatt acttcatcac
     1321 ttagacaaaa aaggcgaaag tcttatgggt agctctgtta ttatcaatgc tcctagactt
     1381 gtttataaac tttcgttcga aaagggagaa gataaaaatt ctaccaccta tcgcttgctt
     1441 gaggtgctaa aggataataa taatatcaat gctggagaat ttcaaaaaac gattaaagta
     1501 ttgcaaaatt ctagtattga tgagccttca attgtaaatc ttagagctaa cagcattgat
     1561 tctaatactt tagagattat caataaaaaa gatatttctg ctgtaagtgt taatgaatta
     1621 gcaaaaggct atgtaacaat gaatgaaaat agaggtgttt tttatttaag ctcacgaaag
     1681 cttacagaca ctaattttta taaagtattt aaagaaaatg ataataaaat agattttaaa
     1741 atgacaggtg cgaatgactc atcatatgtc ataagtttaa agaactcttt gcttacgcaa
     1801 acgcatagga atattttaga tgctttattt ttatatatca aaaaaaatgt ggatacaagt
     1861 gttattaaaa aatatcaaga aaatttttgg gatatggaag taagattaga gccttataaa
     1921 ttcttgaaac aatatcttaa taaaaattct aataattact cttggttgaa acaaaaattt
     1981 acagaaatct ctcgttttgc gtatgatttg gctttcactc aaaatgtaga agataaagat
     2041 aaaaaaacaa tcactcaaag agataaaggt attttaatgt ttgactctgt agagcgtatc
     2101 acaaaagaaa atggaacaat tgtatctgta ttcgtgctaa cagttcgtag agaatatatt
     2161 aaaaaactcg aaacagaatc taccctttct tatgatgatg atttatccaa aattcttatt
     2221 aatttaaatt ctttggtggc acaagatttg attagatttt taacaagttt tcctgataag
     2281 aaaattctta gttatagtga gttttgtgaa attaaagctt atagatttta taaagaaagt
     2341 tctattattt cgaaacaaaa gaaagagatt gttaaattaa aagataaact tatagaattt
     2401 ggaattaatg tttatggcaa aggcgtagaa tttgc
//
LOCUS       DAPIWQ010000176         2365 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.178, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000176 DAPIWQ010000000
VERSION     DAPIWQ010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2365
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.178"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..262)
                     /locus_tag="RJ267_001698"
     CDS             complement(<1..262)
                     /locus_tag="RJ267_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389528.1"
                     /translation="MKKAYVLIWTIFLILLISLWMSLTLNISSYTPKIIQDSYYYLQA
                     QILSHNATQFSKYFLYQAKQENKECLDNIYFNYTKALIKIKYF"
     gene            complement(259..921)
                     /locus_tag="RJ267_001699"
     CDS             complement(259..921)
                     /locus_tag="RJ267_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389529.1"
                     /translation="MSKAFTLFELIISLILFTFITSLLSKPLMDFYHLNFTALHTNNL
                     ITQAHLNLLKIEKLIQNCINITFSQNTLKCLLKDELISLKDNKLYLINSALILENNHT
                     LYSPHSDFKTQLQNRKDLYNDNEHISYAYKINKIEKISILENGISANFTGSFIPLQAQ
                     LVIKLQNEELIYEIKPKFNEQLNQQGLISKNISSFNLQNNKLKICLKRQTKHCLEKRI
                     LL"
     gene            complement(918..1220)
                     /locus_tag="RJ267_001700"
     CDS             complement(918..1220)
                     /locus_tag="RJ267_001700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HDV7389530.1"
                     /translation="MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERL
                     YKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDGIFQFQKLYFQDQNYSVYFKE"
     gene            complement(1217..1948)
                     /locus_tag="RJ267_001701"
     CDS             complement(1217..1948)
                     /locus_tag="RJ267_001701"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HDV7389531.1"
                     /translation="MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKT
                     LLYKDFNIEGKDVILAFKPYALENIAQMLKGQARILISVLANVDFEKLQTIKAQNYVR
                     IIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
                     FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSNALLEHEHPAIIKENICSPGGVTI
                     KGIKILEQKGIRGSFFEAINASSAK"
     gene            complement(1948..2337)
                     /gene="fliW"
                     /locus_tag="RJ267_001702"
     CDS             complement(1948..2337)
                     /gene="fliW"
                     /locus_tag="RJ267_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HDV7389532.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFDIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     TMVQVILDTVNYPDFFQADQIANYIKK"
BASE COUNT          799 a          287 c          355 g          924 t
ORIGIN      
        1 aaaaatattt tattttaatc aaagcttttg tgtaattaaa atatatatta tctaaacatt
       61 ctttattttc ttgctttgct tgatataaaa aatatttaga aaattgtgtt gcattgtgac
      121 ttaaaatttg agcttgaagg tagtaataac tatcttggat tatttttgga gtatagctgg
      181 atatgtttaa ggtcaagctc atccatagac ttattagcag tattaaaaaa attgtccaaa
      241 ttaaaacata agcttttttc acagtaaaat tcttttttca aggcaatgtt ttgtttgtct
      301 ttttaggcaa atttttaatt tattgttttg caggttaaat gagcttatgt ttttagaaat
      361 taatccttgt tggtttaatt gttcattaaa ttttggcttt atttcatata taagttcttc
      421 attttgcaat ttgataacta attgagcttg caaaggaata aaactacctg taaaatttgc
      481 agatatacca ttttccaaga tagatatttt ttcaatctta ttaattttat aagcatagct
      541 aatatgttca ttgtcgttat ataaatcttt tctattttgg agttgtgttt taaaatcaga
      601 atgaggtgaa taaagtgtat gattattttc taaaataaga gcagaattaa taagataaag
      661 tttattatct tttaggctaa ttaactcatc ttttaaaaga cattttaatg tattctgtga
      721 aaatgtaata ttaatacaat tttgtattaa tttttctatt ttaagcaagt ttaaatgtgc
      781 ttgagtgata agattgtttg tatgtaaagc agtaaaattt aaatgataaa aatccattaa
      841 aggttttgaa agtaagctag ttataaaagt aaaaagtatt agtgatatta taagttcaaa
      901 aagtgtaaaa gctttgctca ttctttaaaa taaacgctat aattttgatc ttgaaagtat
      961 aatttttgaa attgaaatat accgtcatta acaaactgtt cttgtaaaac tataggtttt
     1021 aaggctgaag tttgaagtat gatggtttta aaaataggct tttcatataa ttcttcttga
     1081 agtttataga gtctttcaaa aatatttaaa ttttcatagt ttttgtaaag ttgaatatag
     1141 taataaaaaa tgccaatgaa aattaaagat atgatcgtta tagcactaat gctttctata
     1201 agtatgaaag cctttttcat ttagcgctgc tagcatttat ggcttcaaaa aaacttccgc
     1261 gaattccttt ttgttcgagt atttttatgc cttttattgt aactccgcca ggggagcaaa
     1321 tattttcttt gataatagct ggatgttcat gttctagtaa agcattagag cttttaaata
     1381 aagagcgcgt aagattgaga ctaagttctt ttgacaaacc ttcataaact ccagcattag
     1441 caatgctttc tgctataagt gctaaaaaag caggagcgca gccgctaatc gccatagctg
     1501 cattcatttg tatttcatta tctaatttat aagccgagcc aaaagttttt aaaatgtcta
     1561 aaatttcatt ttcaaaatga gagtttttaa gtatatatgg tgtggttgaa gccttgtatt
     1621 tagctgctgt attgggtatt attctaacat aattttgagc tttgatggtt tgtagttttt
     1681 caaaatcaac attggctaaa acagagatta agatacgtgc ttgtcctttt agcatttgag
     1741 caatattttc taaagcataa ggtttaaatg ctaaaataac atctttacct tctatgttaa
     1801 aatctttgta aagtaaggtt ttaaagcctt ctttggcgag ggcttgaagt ttttctatac
     1861 ttcttcctac tatacaaatt tcataatcat cttttaaccc ataggctaag gctgttgcca
     1921 tagatccatt tgcaagtata tagagcatta ttttttaata taattagcaa tttgatcagc
     1981 ttgaaaaaag tcgggataat taactgtatc tagtatcact tgtaccatag tattattatc
     2041 aagattaatg actactggag ctagaaaatt cactgtcgat tcttcaatgc tttttgctat
     2101 ggctactata ttaaaaattt tcatattaga ttcaggtgtt aaagaaagaa gctcttgata
     2161 ataagttggt atatcaaatt cataatcagg tctaatcaaa taaggattaa ttaaaacaaa
     2221 agaaaagtct ttaccatcaa gacttttaag tcttacaaat acttcatcga tagttgaaaa
     2281 ttccatattt ttggtttctt caaaacctaa gatagggcat ttaacagcta gggtcatgtt
     2341 ttctcctcaa gttataatgt ttaat
//
LOCUS       DAPIWQ010000177         2312 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.179, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000177 DAPIWQ010000000
VERSION     DAPIWQ010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2312)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2312)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2312
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.179"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            6..2108
                     /gene="ccaA"
                     /locus_tag="RJ267_001703"
     CDS             6..2108
                     /gene="ccaA"
                     /locus_tag="RJ267_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HDV7389533.1"
                     /translation="MFKSLNIGLKLIFSVAAVVVIGLVILISLITKQVSQNITKNTED
                     ILASITKEYATQTQGIFGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDN
                     SAYSNFTYLYLIDPPEYFKEESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIAN
                     LQVVQDILKKAKYGENKVYIGRPIKMNLEGQDFDAVNVAIPIFDRKNQVVGVIGMTLD
                     FSDIATYLLDPKGQKYDGELRVLLNSDGFMAIHPNKNLVLKNLKDINPNKGAQETYKA
                     ISEGKNGVFNYIASDGDDSYAAINSFKVQDSSWAVLVTAPKYSVFKPLKKLQLIILGA
                     SFIFIFVVLGVVYYCVRKIVASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGA
                     MGRIINENIEKIQISLEQDQNAVDESVQTAREIEKGNLTARITKNPINPQLVELKDVL
                     NRMLDVLQSKIGSNMNEINRVFDSYKALDFSTEVFNAKGEVEITTNILGKEIKKMLLA
                     SSNFAKDLANQSEELKNSMQKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVA
                     SQADDIKNIVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKS
                     LSEIEANINILVQSVNEVAESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITN
                     EVNQIAAAILEDVNKKRF"
     gene            2219..>2312
                     /locus_tag="RJ267_001704"
     CDS             2219..>2312
                     /locus_tag="RJ267_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDV7389534.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILE"
BASE COUNT          875 a          283 c          400 g          754 t
ORIGIN      
        1 ataagatgtt taaatcttta aatataggtt taaaacttat tttttctgtg gcagctgttg
       61 ttgttattgg acttgttatt ttaatttcat taatcacaaa acaagtaagt caaaatatta
      121 ccaaaaatac agaagatatt cttgcttcta tcacgaaaga atatgctact caaactcaag
      181 gaatttttgg ggaaatgatc gctttaaata aaagtatttc aggtacttta acagaaatgt
      241 ttagatcaac ctctaaagaa gatttagata tagacaatat aacaaatatt ataaccaata
      301 cttttgataa tagtgcttat tctaatttta cttatttata tcttattgat ccgccagaat
      361 actttaaaga agagagtaaa ttttttaata ctcaaagtgg aaaatttgtt atgctttacg
      421 ctgatgaaga aaaggataat aaaggcggaa taaaagcaat acaagctagt gatgaaatag
      481 ctaatctgca agttgtgcaa gatatattaa aaaaagcaaa atatggggaa aataaagtat
      541 atataggccg tcctattaag atgaatttag aaggtcaaga ttttgatgct gtaaatgttg
      601 ctatacctat ttttgatcga aaaaatcaag ttgtaggtgt cataggcatg actttagatt
      661 tttcagatat tgctacttat cttttagacc ctaaaggtca aaaatatgat ggtgaattaa
      721 gagttctttt aaattcagat ggttttatgg cgatacatcc aaataaaaat ctagttttaa
      781 aaaatttaaa agatatcaat cctaataaag gtgcacaaga aacttataag gccataagtg
      841 aaggaaaaaa tggagttttt aactatatag cttctgatgg tgatgattct tatgctgcga
      901 ttaatagttt taaagtgcaa gatagttctt gggcagtttt ggtaactgct cctaaatatt
      961 cagtatttaa acccttaaaa aaattacaat taattattct tggtgcatct tttattttta
     1021 tttttgttgt tttaggagtg gtttattatt gcgtaagaaa aattgtcgca tctagattgc
     1081 ctgtgattct tagttcttta gaatcatttt tccgtttttt aaatcatgaa aaaattgaac
     1141 ctaaggctat tgaaattcgt gctaatgatg agctaggagc aatgggaaga atcataaatg
     1201 aaaatattga aaagattcaa atatctttag aacaagatca aaatgctgta gatgaatcgg
     1261 tgcaaactgc tagagaaatc gaaaagggta atttaactgc aagaattact aaaaatccta
     1321 taaatcctca attagtagaa cttaaagatg ttcttaatag gatgcttgat gttttacaaa
     1381 gtaaaattgg ttctaatatg aatgaaatta atagagtttt tgatagttat aaggctcttg
     1441 attttagtac agaagtattt aatgctaaag gtgaagttga gattacaact aatattttag
     1501 gcaaagaaat taaaaagatg cttttggctt cttcaaattt tgctaaagat ttagccaatc
     1561 agtcagaaga gttaaaaaat tctatgcaaa aacttgctga tggctctaat gcacaagcga
     1621 gttctttaga acaatcggct gcagctgtgg aggagattaa ttcttctatg caaaatgtaa
     1681 gtggaaaaac agttgaggtt gcttcacaag ctgatgatat aaaaaatatt gtcaatgtga
     1741 ttaaagatat cgctgagcaa acgaatcttc ttgctttaaa tgcagctatt gaagctgcac
     1801 gtgctggaga acatgggcgt ggttttgcag ttgttgcaga tgaggtaaga cagcttgcgg
     1861 aaagaacagg aaaatcctta tctgaaatcg aggcaaatat taatatactt gttcaaagcg
     1921 taaatgaagt agcagaatct gtaaaagaac aaacagcagg aatcacacag attaacgatg
     1981 ctatagcaca acttgaaact gtaactaagg aaaatgtcga agttgcaaat gtcaccaata
     2041 atataacaaa tgaagtcaat caaattgctg cggcaattct tgaagatgtg aataaaaaaa
     2101 gattttaaaa aagctcattt ttgagctttt aaattttttc tatattattt aaaattttta
     2161 aacacaaaac aagtaataaa ataatattat ttttcaaagc taatatcaag gaaaaataat
     2221 gaaaattgat tgtcgcaatc tatcttgtcc tcagcctata gttgaaacaa aaaacgctct
     2281 tgaaaaactt caagaaaatg aaattttaga aa
//
LOCUS       DAPIWQ010000178         2273 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.180, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000178 DAPIWQ010000000
VERSION     DAPIWQ010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2273)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2273)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2273
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.180"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            77..2272
                     /locus_tag="RJ267_001705"
     CDS             77..2272
                     /locus_tag="RJ267_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase 3"
                     /protein_id="HDV7389535.1"
                     /translation="MRLFIAEKPELGRAIAEGLDGNYKSGEGYIQKGDNIVTWAFGHI
                     LELAKPEEYDEKYKLWKLEDLPLPIKEFKYLPKKESKKQLKIICDLIHSDKITSIVNC
                     GDADDEGQILVDEIIQYSKTSKPVFRVLINDLTPKAVKEEIAKIKPNADFKGMSERGF
                     ARSQADWIVGINLTRAYTIMARKNGYEGVLSVGRVQTPILSLIVNRDKEFENFKSIDY
                     YSLLGDFNINNNTIKARLKTEDKILDENLAKEIKESCENQNAKINLKIENKKEYPPLP
                     YNLLVLQAECAKLFGFSPDKTLEITQNLREKHKAITYNRSDCQYLPETMFEQAPNILN
                     IIKENLNSNDEIQALIASSDLTIKSKAFNDANISAHYGIIPTQNKISSQLTQDELVVY
                     NLIAKRFIIQFFHPREYQTNTINLEVNQRIFTATQNKTTKSGFRSLWQNVDSEEEQEN
                     NENDINDLSILKNGDIAKCSLIQIEKKQTKPRPYYTMTTLLKDLNSVAKYVSDERIKK
                     LLMEKDKDKKGESGGIGTPATRSNHIKTLIEREYIEVSKDKKQIIKSTKKGRDLIKLS
                     PKSLITPDMTALWFEQQKMIEISELRREQFLEEITKEVISEIQRIDKNQEFKILDNEN
                     KPKIQCPQCNKGFLTKRKGKYGNFWGCSEYMEGCKAIYPDNKGTPNFETKQASNDTTH
                     KCPQCNKGFLQRIKSKNGNSWWWGCSEFKQGCKAMYYDNNNGKPKIINV"
BASE COUNT          989 a          297 c          366 g          621 t
ORIGIN      
        1 aacattaata actattattt tctaatattt attaataata tagcaaacaa taagataaga
       61 tttttgaaag gcaaaaatga gattatttat agctgaaaaa cccgaacttg gtagagcaat
      121 tgcagaagga ctagatggca attataaaag cggagaagga tatatacaaa aaggtgataa
      181 tattgttact tgggcttttg ggcatattct agagcttgcg aaacctgaag aatatgatga
      241 aaaatataag ttatggaaac ttgaagactt accactaccc attaaagaat ttaaatactt
      301 acccaaaaaa gaaagtaaaa aacaattaaa aattatttgc gatttaatcc atagcgacaa
      361 gattacttct attgtaaatt gtggggatgc ggatgatgag ggtcaaattc ttgttgatga
      421 aattattcaa tactccaaaa cttctaaacc tgtatttagg gttttaatca atgatttaac
      481 accaaaagca gtaaaagaag aaatagcaaa aattaagcca aatgcagatt ttaaaggaat
      541 gagcgaaaga ggttttgcaa gaagtcaagc agactggata gttgggataa atcttactag
      601 ggcttacacc ataatggcac gaaaaaatgg atatgagggt gttttaagcg taggtagagt
      661 tcaaacacct attttgtctc ttatagttaa tagagataaa gaatttgaaa attttaaaag
      721 tatagattat tattccttgc taggtgattt taatatcaac aataatacta ttaaagcaag
      781 attgaaaaca gaagataaaa ttttagatga aaatttagct aaagagatca aagaatcttg
      841 tgaaaaccaa aatgcaaaaa ttaatttaaa aatagaaaac aaaaaagaat atccaccgct
      901 accttataac ctacttgttt tacaagctga atgtgcaaaa ctttttggtt ttagccctga
      961 taaaacatta gaaatcactc aaaatttaag agaaaaacat aaggctataa cttataatag
     1021 atcagattgt caatatttac ctgaaacaat gtttgaacaa gcaccaaata ttttaaatat
     1081 tataaaggaa aatttaaatt ctaatgatga aattcaagct ctcattgcta gcagtgattt
     1141 aacaataaaa agcaaggctt ttaacgatgc taacatttca gcacactatg gaataatccc
     1201 tacccaaaat aaaatttcat cgcaattaac tcaagatgaa ttagtcgttt acaatctaat
     1261 cgctaaaaga tttattatcc aattctttca tccgagagaa tatcaaacta atacaattaa
     1321 tttagaagta aatcaaagaa tttttaccgc tactcaaaac aagacaacaa aaagtggttt
     1381 tagaagtctt tggcaaaatg tagatagcga agaagaacaa gaaaataatg agaatgatat
     1441 aaacgattta tctatcttaa aaaatggtga tattgcaaaa tgctctttga tacaaattga
     1501 aaaaaagcaa acaaagccac gcccttacta cactatgaca acgctactta aagatttaaa
     1561 tagtgtcgca aaatatgtgt ctgatgaaag aattaaaaaa ttgctaatgg aaaaagataa
     1621 agacaaaaag ggtgaaagtg gtggcatagg aacacctgca acaagatcta atcatataaa
     1681 aacattaatt gaaagagagt atatagaagt aagtaaagat aaaaaacaaa ttatcaaatc
     1741 cactaaaaaa ggtagagatt taattaaact ttctccaaaa tcacttatta ctcctgacat
     1801 gacagcattg tggtttgagc aacaaaaaat gatagaaata tcagaattaa gaagagaaca
     1861 attcttagaa gaaatcacaa aagaagtaat tagcgaaatt caaagaattg ataaaaatca
     1921 agagtttaaa atactagata atgaaaacaa accaaaaatt caatgtccgc aatgcaataa
     1981 aggattttta accaaacgaa aagggaaata tggaaacttt tggggttgta gcgaatacat
     2041 ggaaggttgc aaagccattt atcctgataa caaaggcaca ccaaactttg aaacaaaaca
     2101 agcaagcaac gatactactc ataaatgtcc gcaatgcaat aaaggatttt tacaaagaat
     2161 aaaaagtaaa aatggtaata gttggtggtg gggttgtagt gaatttaaac aaggttgcaa
     2221 ggctatgtat tatgacaata ataatggaaa acctaaaata ataaatgtat aac
//
LOCUS       DAPIWQ010000179         2262 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.181, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000179 DAPIWQ010000000
VERSION     DAPIWQ010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2262)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2262)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2262
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.181"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            29..1135
                     /gene="glf"
                     /locus_tag="RJ267_001706"
     CDS             29..1135
                     /gene="glf"
                     /locus_tag="RJ267_001706"
                     /EC_number="5.4.99.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
                     /protein_id="HDV7389536.1"
                     /translation="MYDYLIVGSGLFGSIFAYEATEKGYTCLVVEQREHIGGNCYTEN
                     IKNINVHKYGAHIFRTSDQNIWDYMNQFCEFNHFINSPIAIYKDEIYNLPFNMNTFSK
                     LWGIKTPNEARKIIEMQKQIIQHPPKNLEEQAISLVGTDVYEKLIKGYTEKQWGRSCK
                     DLPASIIRRLPVRYIYDNNYFNDPYQGIPKGGYTAIFDKMLKKSKVILNTDFLKYKDK
                     FKNKAKKIVFTGCIDAYYDYRYGALEYRSLKFEHKILNLDNFQGVAVVNYTDKEIPYT
                     RIIEHKHFEFGNTDTTVISEEYPLEWIKGIEPYYPINDEKNQALYEKYKQLAKHESNV
                     YFGGRLGEYRYYDMQDVVRSALLFCKNELKNKQG"
     gene            1137..>2262
                     /locus_tag="RJ267_001707"
     CDS             1137..>2262
                     /locus_tag="RJ267_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDV7389537.1"
                     /translation="MMNYNTPKVSIVVPSLNSISYIRECIDSILNQTLKDIEILCIDA
                     NSTDGTLEVLKNYEKKDKRLRVIISDKKSYGYQMNLGIKEAKGEYLGIVESDDYIKTN
                     MYERLYEIAKKNDCEVVKGDFYIFAYGKTEYVNVLRNSCEDIYNYKVNWNKDIRIFLG
                     SDGINPIGIYRLDLLRTNQIKLNETPGASYQDNGLWFQIFALAKSIYFINEAFYMLRR
                     DNPNSSVKSKEKVYCACEEYDFIRDFLKKHPDLEKTLAPICALHRFGNYMFTLERIDE
                     RYKLDFLKRFSQDFRKILKDKELDENLFGDGDMKIIYSIVENPENYYFLYMGYCNDMF
                     GKLYFGASERIKWQLSYRIGKLLIDLKNPVQILKFPFKLFL"
BASE COUNT          868 a          206 c          395 g          793 t
ORIGIN      
        1 taattaggtt ttgtgaggaa tgtgattcat gtatgattat ttaattgttg gttctggatt
       61 gtttggtagt atttttgctt acgaagcaac tgaaaaaggt tatacttgtt tagttgtgga
      121 gcaaagggaa catattggag gtaattgtta taccgaaaat attaaaaata tcaatgtgca
      181 taaatatggt gctcatattt ttagaacttc agatcagaat atatgggatt atatgaatca
      241 attttgtgaa tttaatcatt ttatcaattc tcctattgca atctataaag atgaaattta
      301 taatttgcct tttaatatga atacttttag taaattatgg ggaattaaaa ctccaaatga
      361 agctagaaaa ataattgaaa tgcaaaaaca aataattcaa catcctccaa aaaatttgga
      421 agaacaagct atatctttag ttggtacaga tgtatatgaa aaacttatta agggttatac
      481 agaaaaacag tggggtagat cttgtaagga tttgcctgct tctattataa gaagattgcc
      541 tgttcgatat atttatgaca ataattattt taatgatccc tatcaaggta tccctaaagg
      601 cggctatacg gcaatttttg ataaaatgct aaaaaaaagt aaagttattt taaatactga
      661 ttttttaaaa tataaagata aatttaaaaa taaagctaaa aaaatagttt ttactggttg
      721 tattgatgct tattatgatt atcgatatgg agctttggaa tatagaagtt taaaatttga
      781 gcataaaata ttaaatttag acaattttca aggagtggca gttgtcaatt atactgacaa
      841 ggaaatacct tatactagaa ttatagagca taagcatttt gaatttggaa atacagatac
      901 aacagttata agcgaagaat atcctttaga atggattaag ggtattgagc cttattatcc
      961 aataaatgat gaaaaaaatc aagctttgta tgaaaagtat aagcaattag caaaacacga
     1021 gagtaatgta tattttgggg gaagattggg agaatataga tattatgata tgcaagatgt
     1081 tgtaagatcg gcattattat tttgtaaaaa tgagttaaaa aataagcaag gatgaaatga
     1141 tgaattataa tactccaaaa gtttctattg ttgtaccttc attaaattct atatcatata
     1201 taagagaatg tattgatagt atattaaatc aaactttaaa agatattgag atactttgta
     1261 ttgatgcaaa ttcaactgat ggaactttag aagttttaaa aaactatgaa aaaaaagata
     1321 agaggcttag ggtaataata tcagataaga aaagttatgg ttatcaaatg aatcttggta
     1381 taaaagaggc aaagggagaa tatcttggta tagttgaaag tgatgattat attaaaacaa
     1441 atatgtatga aagactttat gaaattgcta aaaagaatga ttgtgaagtt gttaaagggg
     1501 atttttatat atttgcatat ggtaaaactg aatatgttaa tgttttgaga aattcttgtg
     1561 aagatattta taattataaa gtaaattgga ataaagatat aagaatattt ttaggttcgg
     1621 atggaataaa tccaatcggt atttaccgat tggatttatt aagaacaaat caaattaagt
     1681 taaacgaaac tccaggagct tcctatcaag acaatggttt atggtttcaa atttttgctc
     1741 ttgctaaaag tatttatttt attaatgaag cattttatat gcttagaaga gataatccta
     1801 attcatccgt aaaaagcaaa gaaaaagtat attgtgcatg tgaagaatat gattttattc
     1861 gagatttttt aaaaaaacat cctgatcttg aaaaaacact tgctccaata tgtgctttgc
     1921 atcgttttgg aaattatatg tttactttag aaagaatcga tgaaagatat aagttggatt
     1981 ttttaaaaag attttcgcaa gattttcgca agattttaaa agataaagag cttgatgaga
     2041 atttattcgg ggatggtgat atgaaaataa tttattctat agttgaaaac ccagaaaatt
     2101 attattttct ctatatgggg tattgtaatg atatgtttgg taagttatat tttggtgcct
     2161 ctgaaaggat taaatggcaa ttatcttata gaataggtaa acttttgatt gatcttaaaa
     2221 atccagtaca aatcttgaaa tttccattta aattgttttt gg
//
LOCUS       DAPIWQ010000180         2205 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.182, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000180 DAPIWQ010000000
VERSION     DAPIWQ010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2205)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2205)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2205
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.182"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            22..285
                     /gene="rpsT"
                     /locus_tag="RJ267_001708"
     CDS             22..285
                     /gene="rpsT"
                     /locus_tag="RJ267_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HDV7389538.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGNK
                     NAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKIA"
     gene            304..1371
                     /gene="prfA"
                     /locus_tag="RJ267_001709"
     CDS             304..1371
                     /gene="prfA"
                     /locus_tag="RJ267_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HDV7389539.1"
                     /translation="MLASKLDPFFKRFEELNSLLSSSDILNDISKMTTLSKEQKNLEP
                     IVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDP
                     NDERNIFLEIRAGTGGDEASLFVGDLIKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDL
                     KVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLF
                     DEIIEPLITHHQAQALQEQNL"
     gene            complement(1385..2140)
                     /locus_tag="RJ267_001710"
     CDS             complement(1385..2140)
                     /locus_tag="RJ267_001710"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HDV7389540.1"
                     /translation="MNFESIISHMNDHHKSNLVDLCKKFGGIEQVQDVFLKSVDFNGL
                     DLVYNDKENLRVEFPKKADENTIKDAIISLCMSAKSEQNFSGVEKELNEFMLSFNSVA
                     LATLNANGEVVCSYAPFVSTQWGNYIYISEVSEHFNNIKVNPNNIEIMFLEDESKAVS
                     VILRKRLRYRVNASFLERGERFDQIYDEFEKQTGGEGGIKTIRKMLDFHLVKLEFKKG
                     RFVKGFGQAYDIENGNVAHVGASGNPHKFLHKH"
BASE COUNT          819 a          373 c          337 g          676 t
ORIGIN      
        1 tttcaaaaaa ggaaaatata aatggcaaac cataaatctg ctgaaaaaag agcaagacaa
       61 actattaaaa aaacagaaag aaatagattc tatagaacaa gacttaaaaa tataactaaa
      121 gccgtaagag aagctgcagc aaatggaaat aaaaatgctg ctaatgaagc tttaaaagta
      181 gctaataaaa gcattcatgc tatggtaagt cgcggtttca ttaaaaaaca aactgcttct
      241 cgccgtgtaa gccgcttagc ccttttagta aataaaatcg cataattttc tatatagttt
      301 ttaatgttag ctagcaaact agatcctttt tttaaacgct ttgaagagtt aaattctctt
      361 cttagcagtt ctgatatact caacgatatc agtaaaatga ctacactctc taaagaacaa
      421 aaaaatttag aacctatcgt tttaaaagct aaagagtatt taaaaacttt agacaatata
      481 gaagaaaata aagctttgct aaacgatcca gaacttgggg aacttgcaaa agaagaacta
      541 aaaactttag aagaattaaa accgaaactt gaagaagaga ttaaaatttt acttcttcct
      601 aaagatccca atgatgaaag aaatattttt cttgaaattc gtgcaggcac aggtggcgat
      661 gaggcatctt tatttgtggg agatcttata aaagcttatg caagatatgc tgaaaatcgc
      721 ggctataaac ttgagattgt aagctctagt gaaggaagcg taggtggatt taaagaaatc
      781 atcatgcttg ttaaaggaac aggggcttat tcaagactta aatatgaagg tggaacgcac
      841 cgtgttcaaa gagttcctca aacagaatcc caaggacgcg tgcatacttc tgctatcacc
      901 gtggcagtaa tgccagaagt tgatgatata gaaatcgaaa tcaatccaaa cgatcttaaa
      961 gttgatgtta tgcgatcttc aggacatggt ggacaaagtg taaatactac tgattcagct
     1021 gttcgtatca ctcatatccc tacaggtata gttgtagtca atcaagatgg aaaaagccaa
     1081 cacaaaaata aagaaagtgc gatgaaagtc ctaaaagcaa ggctttatga aatgcaagag
     1141 agtgaaagac tagcaaaaga aagtgaagca agaaaatcac aagtaggaag cggagataga
     1201 agcgaacgca ttcgcactta caattttcca caaaatcgta tcagcgatca tagaataaat
     1261 cttactttat atcgcttaga tgccattatg caagatgggc tttttgatga aatcatagaa
     1321 cctttaatca ctcatcatca agcccaagct ttacaagaac aaaatttata agattttata
     1381 taaattaatg cttatgtagg aatttatgtg gatttccact agcacctaca tgtgcaacat
     1441 ttccattttc tatatcataa gcttgaccaa aaccttttac aaagcgtcct tttttaaatt
     1501 caagctttac tagatgaaaa tcaagcatct tgcgtatagt tttaatgcct ccttctcctc
     1561 cggtttgttt ttcaaactca tcataaattt gatcaaatct ttcacctctc tctaaaaagc
     1621 ttgcatttac tctatagcgc aatcttttac gaagtataac agaaacagct ttactctcat
     1681 cctctaaaaa cattatttct atattgtttg gatttacttt gatgttgtta aaatgttcac
     1741 ttacttcact tatataaata taatttcccc attgtgtgct tacaaaaggt gcatacgagc
     1801 aaacaacttc tccatttgca tttaaagttg ccaaagctac agaattaaaa cttagcataa
     1861 attcatttaa ttctttttct acaccactaa aattttgctc gctctttgca ctcatgcaaa
     1921 gggatattat agcatcttta atcgtgtttt catcggcttt tttaggaaat tccactcgta
     1981 aattttcttt atcattgtaa acaagatcta agccattaaa atcaacactt tttagaaaaa
     2041 catcttgtac ttgctcaata ccaccaaatt ttttacaaag atcgactaaa tttgatttat
     2101 gatgatcatt catatgagaa ataatgcttt caaaattcat ttttatcctt tcttgatttt
     2161 aaaataaaat attaaaaaaa atggtatcaa ttatcaaatt aaaaa
//
LOCUS       DAPIWQ010000181         2183 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.183, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000181 DAPIWQ010000000
VERSION     DAPIWQ010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2183)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2183)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2183
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.183"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1475)
                     /locus_tag="RJ267_001711"
     CDS             complement(<1..1475)
                     /locus_tag="RJ267_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7389541.1"
                     /translation="MQIEEIQNYPANLPVLVEDELFLYPFMITPIFINDSSNMKALDL
                     AIKNDSMLFVAPSKLENGRNFDEIYNCGVIGTIMRKVPLPDGRVKILFQGYAKGKIIE
                     QISNKPLEAKIELIKEDFLEGTKKEALLEVLKEKVKNLANISHYFSPDLLRTIEEGFD
                     ASRICDLILNTVRIKKQVAYEFFVLTDLEQKLVKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDTQKEDEVREYQKRLELKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDIPFEKISKKKLDIKEVSKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLANSVSKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVIVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNIDLSKVIFIATANDISNIPAPLR"
     gene            complement(1492..2139)
                     /locus_tag="RJ267_001712"
     CDS             complement(1492..2139)
                     /locus_tag="RJ267_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HDV7389542.1"
                     /translation="MKKGIFLLVFLSVFFSACSTKNDEGLYNLSASEWYKQIIKDLQD
                     KDLEKADDHYNGMASEHVADPLLETTLIILAQAHMDEEEYKLAEFYLDEYNKKFGNSR
                     NADYIRYLKIKAKFDAFAVPNRNQALMLESQKEIDTFLKDYPYTEYEPLVQTMLTKFN
                     LAVFYLNSTIENLYQRIGHDESAQIYKQRLQESEFYQQSIIKPELPWYRSIFERF"
BASE COUNT          695 a          386 c          259 g          843 t
ORIGIN      
        1 tctcttaaag gtgcaggaat attgctaata tcatttgctg ttgctataaa aatgacttta
       61 cttaaatcaa tattaaaatt taaataataa tccctaaatt tagaattttg ctctggatct
      121 aaaatttcta aaagcaccgc acttggatcg cctctaaaac tgcgatttaa tttatcaatt
      181 tcatccaata caattacagg attaatttgt tttgcctcta tgagtccttg ggtaatacgt
      241 ccaggcatag cgcctatata agttctacga tgaccacgta gctcattaac atcttcaagt
      301 ccgcctaagg ctatgcgaat aagctctctt tttaaagctt ttgaaacaga atttgccagt
      361 gaagttttac ccacgccagg aggtccataa agacaaagta taactttagc accatctttt
      421 tctgctattt ttcttttttc taaaagttcc ctaactgcaa aatattcttc tatgcgttct
      481 tttggtttat ttaatgcata atgatcatgg ttgagctgtt ttgaaacttc tttaatatca
      541 agttttttct tagaaatttt ttcaaaagga atatctaatg ctgtttctat gtaagtttga
      601 atcatcgatg cttcggaatt atcttgatga atgcgttcga atttttcaat ttgttttttg
      661 atttctttat aagcgtcttc gtgcataaat ttcttcttta actccagacg cttttgatac
      721 tctctaacct catcttcttt ttgtgtatca gaaccaagct ctttttgaat ttgtcttaat
      781 tgttctttta aaaaatattc tttatttacc ttatcaatac gagaatgtac tttattttta
      841 atttcttttt gaattttatt ggcttctatt tcttgggcaa ttaaatctat taattttact
      901 aatttttgct caagatctgt taaaacaaaa aactcataag caacttgttt tttaatacgc
      961 acagtattta aaatcaaatc acaaatccta gacgcatcaa aaccttcttc aattgttctt
     1021 aaaagatccg gagaaaaata atgactaata tttgccaaat tttttacctt ctcttttaaa
     1081 acttcaagaa gcgcttcttt tttagttcct tctaaaaagt cttcttttat aagttctatc
     1141 ttggcttcta aaggtttatt agaaatttgc tctataattt tacccttagc atatccttga
     1201 aaaagtattt tcacccttcc atcaggtaaa ggaacttttc gcatgatagt cccaatcact
     1261 ccgcaattat aaatttcatc aaaatttctt ccattttcca actttgaagg tgcaacaaaa
     1321 agcatgctat catttttaat cgcaagatct aaagctttca tattggatga atcgttaata
     1381 aaaataggag ttatcataaa aggatataaa aataattcat cttcaaccaa tactggtaaa
     1441 tttgctggat aattttgtat ctcttcaatc tgcatttatt ttccttgttt attaaaatct
     1501 ttcaaatata cttctatacc aaggaagctc aggtttgata atactttgct gataaaattc
     1561 actttcttga agtctttgtt tataaatttg tgcactttca tcatgcccta tgcgctggta
     1621 tagattttct atagtactat taagataaaa aaccgctaaa ttaaattttg taagcattgt
     1681 ttgaaccaaa ggttcatatt ctgtataagg ataatctttc aaaaaagtat ctatttcttt
     1741 ttggctttca agcattaaag cctgattacg atttggcact gcaaatgcat caaattttgc
     1801 cttaatttta agataacgaa tataatcagc attgcgtgaa tttccaaatt ttttattata
     1861 ttcatctaaa taaaattcag ctaacttata ttcctcttca tccatatgag cttgtgctaa
     1921 aataattaaa gtagtttcca ataaaggatc ggcaacatgc tcacttgcca taccattata
     1981 atgatcatca gctttttcca aatccttgtc ctgcaaatct ttaataattt gcttatacca
     2041 ctcactagca ctaagattgt ataaaccttc atcatttttc gtactacacg cactaaaaaa
     2101 aacacttaaa aaaaccaata aaaaaatacc ttttttcata cttcaccttg atttatattc
     2161 tcaaaaatat atattttaac gat
//
LOCUS       DAPIWQ010000182         2123 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.184, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000182 DAPIWQ010000000
VERSION     DAPIWQ010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.184"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..748)
                     /locus_tag="RJ267_001713"
     CDS             complement(<1..748)
                     /locus_tag="RJ267_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389543.1"
                     /translation="MENKFKINYDQTTTNGRNGTNGKVDNLSMKNHHLKSIGHSPDIF
                     GLFVSIVNQFTNTSTFVSNGKIITIDTNTFELQGGNFIAKIFCGFFNWFGHLASDWCG
                     SSGGKERGAGIPMPFYNLFLLCDFGNFGQHRQTLAQIATQVFEQGYDLRHGVTMSIPV
                     MINKMLIRFMYIIKAKFYHKKEWKECIPKDNIPELNKMLLIGSGTFLLIDTGGAWIKS
                     KNPITNPVVFLSEINLINVIRFSTLILKEIY"
     gene            complement(754..1035)
                     /locus_tag="RJ267_001714"
     CDS             complement(754..1035)
                     /locus_tag="RJ267_001714"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389544.1"
                     /translation="MITYSNLSDVKKRIEDEFTHRNAECDKYDYLIAITCGAIAGIMD
                     IFLVGNPKDSYLGKKVDKTVEKMTQKFAQLCGWDKQKALDKNKDLTKSV"
     gene            complement(1361..1825)
                     /locus_tag="RJ267_001715"
     CDS             complement(1361..1825)
                     /locus_tag="RJ267_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389545.1"
                     /translation="MSVSIMELLGFGELIKLPLIDSSKKYHNKNKQQLRLFIIQEILK
                     ENQKTITQIIDIINNLIEQCNTNTQNLQELIKLLKLASKNNETFKEREKLLYCPETLS
                     LITINNHLKEDDIQFIEQYYTYNQNTHKYERNDNLSSSDLEKLSNFFKLKNL"
BASE COUNT          673 a          283 c          247 g          920 t
ORIGIN      
        1 tataaatttc tttaagaatt aaagtgctaa atcttataac attaattaaa ttgatttcag
       61 aaaggaaaac taccggattt gttataggat ttttactttt tatccatgca ccaccagtat
      121 caattaataa aaaagtacca gatcctatta aaagcatttt atttaattca ggtatgttat
      181 cttttggtat acattctttc cattcttttt tgtggtaaaa tttagctttt attatataca
      241 taaaacgaat tagcatttta ttaatcataa caggaataga catagtaact ccatgcctaa
      301 gatcatatcc ttgttcaaaa acttgggttg caatttgtgc tagtgtttgt ctatgttgtc
      361 caaaatttcc aaaatcacaa agtaaaaata aattataaaa aggcatagga atgcctgcac
      421 ctctttcctt gcctccacta gatccacacc aatcagatgc taaatgtcca aaccaattaa
      481 aaaatccaca aaatatttta gcaataaaat ttcccccttg taattcaaaa gtatttgtat
      541 ctatggttat gatttttccg ttgctgacaa aagttgaagt attggtaaat tgatttacta
      601 tagatacaaa taacccgaaa atatctggag agtgacctat gctttttaaa tgatgatttt
      661 tcatacttaa attatctact tttccatttg ttccatttct tccatttgta gtagtttgat
      721 cataattaat tttaaatttg ttttccaaaa acgctataca cttttagtta aatctttgtt
      781 tttgtctaat gctttttgct tatcccaacc acataattgt gcaaattttt gagtcatttt
      841 ttctaccgtc ttatctacct tttttcctag atagctatct ttaggatttc caactaaaaa
      901 aatgtccata atgccagcta ttgctccaca tgttattgct attaaataat catacttatc
      961 gcactctgca tttctatggg taaattcatc ttcaattctt tttttaacat ctgataaatt
     1021 tgaataagtg atcaaaaatt ttaaagaatc ttcatttgag tttatttttt taagtttaaa
     1081 tatttttcaa ttttttgaca atatgtttcc caattgctat aagtgttaaa aaaaattttc
     1141 caatgaatcg attgattgat tttccttata ttctatattg ctcaaatttt gatttttttc
     1201 tgtgatacta ttttgaatct gttctatggt taaacattat tctttgatat ttttttcaat
     1261 ttcggataat ttattttgta ttaaaaagat ttgttgtttt tcggctaata tagccttttc
     1321 tattttggtg ttttcttgta ttttatccat aaaattatcc ttatagattt tttaatttaa
     1381 aaaaatttga aagtttttct aaatccgacg aagaaagatt gtcattgcgc tcatacttat
     1441 gagtattttg attataggta tagtattgtt ctataaattg aatatcatct tcttttagat
     1501 gattatttat tgttatcaat gaaagcgttt ctgggcaata taaaagtttt tccctttctt
     1561 taaaagtttc attatttttt gaagccaatt ttaataattt tattaattct tgtaaatttt
     1621 gtgtatttgt attacattgc tcaattaaat tattgatgat atcaataatt tgggtaattg
     1681 ttttttgatt ttctttgaga atttcttgaa taataaaaag acgtaattgt tgtttgtttt
     1741 tattgtgata tttttttgaa gaatcaatta gtggtaattt tattaattcc ccaaatccta
     1801 gtaactccat aattgataca gacatgccaa ttgtcattcc tgaaagatgt aaaccgttta
     1861 atgatatatt attttttgta gctgtttcgg atataaagtt aaaaatttgc tgaatttctt
     1921 tattatcgtc taatattatt tgatattctt ttttaatgat ttcttttacc caatagattt
     1981 ctttaaggtc tttgatttta aaaatgtctt tgttttcata caaaaaatta taaattttat
     2041 tatcttcaaa atctatatca attaagtctt ttattagcga aattaaaata tatttgaatt
     2101 gcataaatct agattcttgt ttt
//
LOCUS       DAPIWQ010000183         2115 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.185, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000183 DAPIWQ010000000
VERSION     DAPIWQ010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2115)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2115)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2115
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.185"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..311
                     /locus_tag="RJ267_001716"
     CDS             <1..311
                     /locus_tag="RJ267_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389546.1"
                     /translation="EKDFNFISSLFIKKKQNLSKIIHFKVLKDDLKPNVKEKIHFFAM
                     FFTLFKLMAYVILVAGFLFLHRQDKLDIFAYICGISSLLVCVFIFILYIKKYESKKNY
                     "
     gene            289..1476
                     /locus_tag="RJ267_001717"
     CDS             289..1476
                     /locus_tag="RJ267_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7389547.1"
                     /translation="MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLA
                     VGVVSSCFFVGALVGTISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAIL
                     RFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
                     VFILSATLILLSSLPLNLIKIKEPVLPASSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMASLFILLQGFDTKAVSYFIFCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFI
                     TMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSKNKGVELGRGVLFCY
                     SLGSLFGPLILGFLMQYFEIKGFIWFYIVSLAFLILFAINKPNILNKKFKKKPGNMVI
                     FDD"
     gene            1469..>2115
                     /locus_tag="RJ267_001718"
     CDS             1469..>2115
                     /locus_tag="RJ267_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HDV7389548.1"
                     /translation="MINTQLASQIANTQKNDLKVDNSASKDKTNLKDNPKEALAQALK
                     QNLGLSKDASSEEILAKFVQNETGTKLKELVNKLLDQINAQKNPDSPVLKQGKNLNLA
                     PNFANELKILSTELAKSDTFTQVLDRLNQILKPASEIKNNNLAPLFKNSGVFLEAKLK
                     DALNEELLPKSFHSLLSTIKGLSSEKLSVQIAQLANTNLSPKDTLKELKNIINSS"
BASE COUNT          719 a          287 c          315 g          794 t
ORIGIN      
        1 atgaaaaaga ttttaatttc atttcgtcac tttttatcaa aaaaaaacaa aatttatcaa
       61 aaattattca ttttaaagtt ctaaaagacg atttaaagcc aaatgttaaa gagaaaatcc
      121 atttttttgc tatgtttttt actctcttta aattgatggc ttatgtaata ttggttgctg
      181 gatttttatt tttacatcgc caagataaat tagatatctt tgcttatatt tgtggaattt
      241 catccttgct agtttgtgtg tttattttta ttttatatat aaaaaagtat gagtccaaaa
      301 aaaattatta aatcaatgac agcacttttt gctggtatgg catttttatt tgcaggtaat
      361 gccttgatag taagctctat aggtgttata ttaaaagaaa acggagaaag ttctttagct
      421 gttggagtag taagttcttg tttttttgta ggcgctcttg ttggaactat cagtgctcat
      481 aaaattattt ctcgtatagg tcatatacgc tcttttgggc tatttggtgc tatttttgga
      541 atttcagcta tgcttcatac agtaagcgaa aatcttattt tttgggctat tttaagattt
      601 ttcataggaa tttgctacta tggactttta atggtcatag aatcatggct taatgaaaaa
      661 agcaaaaatg ccattcgatc tagaatttta ggcttttatg aaattgtttt ttatcttgcg
      721 tttggtattg gagttttaat catagcgtta aatttgagca aacatagtgt atttattctc
      781 agtgcaactt taattttact ttcatcttta cctttaaatc taattaaaat caaagaacct
      841 gttttacccg catcaagtcc tatttctata cctaaaattt ttgatatagc tcctttagct
      901 atcgtcacaa gctttatagc tggaatgctt ataaatggct ttttttctat ggcatcttta
      961 tttatacttt tgcaaggttt tgatacaaaa gcggtttctt attttatatt ttgtggggtt
     1021 ttaggtggtt ttattgcaca aaccatcata ggaactattt cagacaaact tggtcgcaaa
     1081 tttgccatta tcacttgtgc aagcatagga tttatcacta tgcttatatt tatctttttt
     1141 aaacttcatt tatatatgca atatttttta ggaattactc ttggtatagg aatattttgc
     1201 ttatatgctt tagcacttgc tagagcaaat gatgttttag taagcaaaaa taaaggtgta
     1261 gagttaggtc gtggggttct tttttgttat tctttgggct ctttgtttgg ccctttaatt
     1321 ttaggttttt taatgcaata ttttgaaatc aaaggtttta tatggtttta tatagtttct
     1381 ttagcatttt taattctttt tgctatcaat aaaccaaata ttttaaataa aaaatttaag
     1441 aaaaagcctg gaaatatggt gatatttgat gattaatact caactagcaa gtcaaattgc
     1501 caatacgcaa aaaaatgatt taaaagtaga taactctgct tcaaaagata aaacaaattt
     1561 aaaagacaat ccaaaagaag cacttgcaca agctttaaag caaaatttag gtttaagcaa
     1621 ggacgctagt agtgaggaaa tactagcaaa atttgttcaa aatgaaacag gtaccaaatt
     1681 aaaagaactt gttaataaac ttttagatca aatcaatgct caaaaaaatc ccgattcccc
     1741 tgtgcttaaa caaggaaaaa atttaaattt agctcctaat tttgctaatg aattaaaaat
     1801 cttaagtaca gaacttgcaa aaagtgatac ttttacacaa gttttagaca gattaaatca
     1861 aattttaaaa cctgccagtg aaataaaaaa caataactta gctcctttgt ttaaaaattc
     1921 aggcgtattt ttagaagcta aattaaaaga tgccctaaac gaagaattac tacccaaaag
     1981 ttttcactct cttttaagta caatcaaagg tcttagtagc gaaaaactaa gcgttcagat
     2041 agcccagctt gcaaatacaa atttaagccc aaaagacact ttaaaagaat taaaaaatat
     2101 tattaattct agcaa
//
LOCUS       DAPIWQ010000184         2110 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.186, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000184 DAPIWQ010000000
VERSION     DAPIWQ010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.186"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            6..81
                     /locus_tag="RJ267_001719"
     tRNA            6..81
                     /locus_tag="RJ267_001719"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:39..41,aa:Met,seq:cat)
     gene            complement(103..975)
                     /locus_tag="RJ267_001720"
     CDS             complement(103..975)
                     /locus_tag="RJ267_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HDV7389549.1"
                     /translation="MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDL
                     NERLTFMPIKKENGRYVLESFALGKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSH
                     RVNKVLMVKNEGFQKVDYELFKDLSVAILKHNVLNFFYKEKERQIKPYKLVNYKGIWY
                     LLGDENDKLKHFNLDKISKLRTKNENFIPNEKLEEQIQNDPNIWLGESKEVILKLDKN
                     AKEYFFRKEILSNYQIIDKDETSYTLSTQVSYEDEILHLVKQWIPYIKILAPIELKIR
                     LEDILKSYLNNLSK"
     gene            complement(972..2039)
                     /locus_tag="RJ267_001721"
     CDS             complement(972..2039)
                     /locus_tag="RJ267_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7389550.1"
                     /translation="MNHLLILYNPYYQEDVIKQHLSILQEKSQVAFGKIKSKLNDQEK
                     QNSLEEIYQSTNEENFLQLFLSDYANLFVAKVVKISKNVDESLIPSYYKEKNLEVEDF
                     FIISDLRELVREDFSRLRDKFLANFITPNDHTYAIYGNHYTYPLPVRLKEECSYFLGD
                     EKHYLSVYKSKEYLAMQENFIRFVFGKRIFYLLHSDSISNIIHAELELLQSENDLLND
                     FTSIIVKYSKTLEYEIYAFAKKVLLKACMKDPSLYDLAYNVQGKSFILKDFFTQKPNL
                     GSIKFLLRHENIQCHLGKSLTQFINYPFSKSLTIIQEIRNEAVHAKAPSLNEVKKLRN
                     EILGIEGVSLLKRILTHKEIS"
BASE COUNT          661 a          324 c          314 g          811 t
ORIGIN      
        1 tatgccgcga agtagagcag tggttagctc gtcgggctca taacccgaag gtcgggagtt
       61 caaatctccc cttcgcaacc agttaaggat ttaaaataaa ttttatttag atagattgtt
      121 taaataactt tttaaaatat cttctagccg tattttcagt tctataggag ctagaatttt
      181 tatataagga atccactgtt taaccaaatg taaaatttca tcttcatagg aaacttgagt
      241 gcttaaagta tagcttgttt catctttatc aatgatttga taattgctta gtatttcttt
      301 tctaaaaaaa tattccttag catttttatc aagttttaaa atcacttctt tgctttctcc
      361 aagccagata ttaggatcat tttggatttg ttcctcaagt ttttcattgg gaataaaatt
      421 ttcattttta gtgcgaagtt ttgaaatttt atctaaatta aaatgtttta atttatcgtt
      481 ttcatcccct aaaagatacc aaattccctt gtaatttacg agtttgtaag gtttgatttg
      541 gcgttctttt tccttataga aaaaatttaa tacattgtgt ttgagtatag ccacactaag
      601 atctttaaaa agctcataat ccaccttttg aaaaccttca ttttttacca tcaaaacttt
      661 atttacccta tggcttaaaa gatcaactat aaagccttga tcgagttttg gataaagctc
      721 agcaatgcca cttaaggtgg cgaaattctg tatatcttta aagcttaatt ttcccaaagc
      781 aaagctttct aaaacatatc ttccattttc ttttttaata ggcataaaag taagtctttc
      841 gttaagatcc ctttgtatgg ttcttgtatc gacattaaac tcttgtgcaa gctcttgggc
      901 gcttagactt tccccattgt taaattttga taaaatctgc accaagcgta tgcttaattt
      961 gtcgtattct ttcatgaaat ttccttgtgg gttaaaattc tttttaacaa acttacgcct
     1021 tctatgccta aaatttcatt tctaagtttt ttgacttcat ttaaacttgg ggctttcgca
     1081 tgaacggctt cattacggat ttcttgaatg atagtaagac tttttgaaaa aggataattg
     1141 ataaattgag ttaaactttt tcctaaatga cattggatat tttcatgtct gagtagaaat
     1201 ttaatacttc caagattggg tttttgggta aaaaaatctt taagtataaa agatttgcct
     1261 tggacattat aagctaaatc ataaaggcta ggatctttca tacaagcttt taaaagaact
     1321 tttttggcaa aagcgtaaat ttcatattct aaggttttag agtatttgac tataatactt
     1381 gtaaaatcat ttaaaagatc gttttcgctt tgcaaaagct ctaattctgc atgaatgata
     1441 ttgcttatgc tatcagagtg taagagataa aaaatccttt tgccaaaaac aaagcgtatg
     1501 aaattttctt gcatggctag gtattctttg cttttataca cacttagata atgcttttca
     1561 tctcctaaaa aataagaaca ctcttctttt aatctcacag gcaaaggata ggtgtaatga
     1621 ttgccataga tagcataggt gtgatcgttt ggtgtgatga aattggctaa aaatttatct
     1681 cttaaacgac taaaatcttc cctgaccaat tctcttaaat cactaataat aaaaaagtct
     1741 tccacttcta aatttttttc tttataataa ctaggaatca aactttcatc aacattttta
     1801 gaaattttta ccaccttagc gacaaataaa ttagcataat cgcttaaaaa gagttgcaag
     1861 aaattttctt catttgtact ttggtaaatt tcttctaagg aattttgctt ttcttgatcg
     1921 ttgagttttg atttgatttt gccaaaggca acttgggatt tctcttgtaa aatgcttaaa
     1981 tgttgcttga tgacatcttc ttgatagtag ggattataaa ggattaaaag gtggttcatg
     2041 ctttgcctta ttttaggatt tctttaaaag gcttagattt attatgagct tcaattaata
     2101 aaattttaca
//
LOCUS       DAPIWQ010000185         2089 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.187, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000185 DAPIWQ010000000
VERSION     DAPIWQ010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.187"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..284
                     /locus_tag="RJ267_001722"
     CDS             <1..284
                     /locus_tag="RJ267_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-2,3 sialyltransferase"
                     /protein_id="HDV7389551.1"
                     /translation="DYLMKRYDVNIYSLNSDEYFKLAPDIGSDFVLSKKPKKYINDIL
                     IPDKYAQERYYGKKSRLKENLHYKLIKDLIRLPSDIKHYLKEKYANKNR"
     gene            265..1296
                     /gene="neuB1"
                     /locus_tag="RJ267_001723"
     CDS             265..1296
                     /gene="neuB1"
                     /locus_tag="RJ267_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialic acid synthase"
                     /protein_id="HDV7389552.1"
                     /translation="MQIKIDKLTISQKNPLIIPEIGINHNGSLEIAKLMVDAAKRAGA
                     KIIKHQTHIVEDEMSQEAKNVIPGNANISIYEIMEQCALNYKDELALKEYVEKQGLVY
                     LSTPFSRAAANRLEDMGVSAYKIGSGECNNYPLIKHIAQFKKPMIISTGMNSIESIKP
                     TVKILRDYEIPFVLLHTTNLYPTPSHLVRLQAMLELYKEFNCLYGLSDHTTNNLACIG
                     AIALGASVLERHFTDTMDRKGPDIVCSMDESTLKDLINQTQEMVLLRGDNNKNPLKEE
                     QVTIDFAFASVVSIKDIKKGEILSMDNIWVKRPSKGGISAKDFEAILGKRAKKDIKNN
                     IQLTWDDFE"
     gene            1293..>2089
                     /gene="neuC"
                     /locus_tag="RJ267_001724"
     CDS             1293..>2089
                     /gene="neuC"
                     /locus_tag="RJ267_001724"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HDV7389553.1"
                     /translation="MKKIVFVSGTRADFSKIKSLMMKVENSNEFELFIFVTGMHMSKK
                     FGSTYMEIEKCGFKNIYKYINHDKYYQMDKALSSTIDGFSKFIHEIEPDLIVVHGDRV
                     EPLAAAIVGSLNNILVAHIEGGELSGTIDESLRHAISKLAHIHLVNDEIAKKRLIQMG
                     EDEKSIFIIGSPDLELLNNTISLDEAKKYYDIKFKNYAIAIFHPITTEINSLYKQSEE
                     FVNALIKSEKNYIVIYPNNDLGFELILQNYERLKNNERFKIFPSLRF"
BASE COUNT          862 a          228 c          355 g          644 t
ORIGIN      
        1 tagattatct aatgaaaagg tatgatgtga atatttatag tttaaattca gatgagtatt
       61 ttaaattggc tccggatatt ggaagtgatt ttgtattgag taaaaaacca aaaaaatata
      121 taaatgatat attgatacca gataagtatg cacaagaaag atattatgga aaaaaaagta
      181 ggttaaaaga aaatctccat tataagctaa taaaagatct aattagactt ccaagtgaca
      241 taaaacacta cttaaaggaa aaatatgcaa ataaaaatag ataaattaac tatttctcag
      301 aaaaatcctt tgataatccc tgaaataggt ataaatcaca atggtagttt agaaatagca
      361 aaacttatgg tagatgcggc caaaagagca ggagctaaga taataaaaca ccaaactcat
      421 atagtcgaag atgaaatgag ccaagaggct aaaaatgtta taccgggtaa tgcaaatatt
      481 agcatttatg agattatgga acaatgtgca ttaaactata aagatgaact agctttaaaa
      541 gagtatgtag agaagcaagg tttggtatat cttagcactc catttagtag agctgcagca
      601 aatcgtttag aagatatggg tgtaagtgct tataaaatag gctcaggtga atgtaataat
      661 tatcctttaa taaaacatat agcacaattt aaaaaaccta tgattataag caccggaatg
      721 aatagcatag aaagtataaa acccacagtt aagatactta gagattatga aatacctttt
      781 gttttgcttc atactacaaa tttatatcct actccatcgc acttagtaag attacaagct
      841 atgttagaat tatataaaga gtttaattgt ctttatggac ttagtgatca taccacaaac
      901 aatcttgcat gtataggtgc aatagctctt ggagcaagtg tactagaaag acactttaca
      961 gataccatgg acagaaaagg ccctgatata gtttgctcta tggatgaaag cactttaaaa
     1021 gatcttataa atcaaacaca agaaatggtg cttttaagag gcgataataa taaaaatcct
     1081 ttaaaagaag agcaagtgac cattgatttt gcatttgcta gtgtagtaag tattaaagat
     1141 ataaaaaagg gtgaaatttt atctatggat aatatttggg taaaaagacc ttcaaaaggt
     1201 ggtataagtg caaaggattt tgaagccata cttggaaaaa gagcaaaaaa agatataaaa
     1261 aataatatac aactaacatg ggatgatttt gaatgaaaaa aatagttttt gttagcggaa
     1321 ctagagctga tttttctaaa ataaaatctc taatgatgaa agttgaaaat tcaaatgaat
     1381 ttgaattatt tatatttgta accggtatgc atatgagtaa aaagtttggt tctacttata
     1441 tggaaataga aaaatgtggt tttaaaaata tatataaata tataaatcac gataagtatt
     1501 atcagatgga taaggcttta tcatcaacaa tagatggttt ttctaaattt atacatgaga
     1561 tagagcctga tttaatagta gtgcatggtg atagagtgga gcctttagct gctgctatag
     1621 taggaagttt aaataatatc ttagtggcac atatagaagg cggagagctt tcaggaacta
     1681 tagatgagag tttaagacat gctattagta aattagcaca tattcattta gtaaatgatg
     1741 aaatagcaaa aaaaagatta atacaaatgg gtgaagatga gaaatctatt tttattatag
     1801 gttctcctga tttagaattg ctaaataata ctatatcttt agatgaagca aaaaaatatt
     1861 atgatataaa atttaaaaat tatgccatag ctatatttca tccaattaca accgaaataa
     1921 actctttata taaacaaagt gaagaatttg taaatgctct tataaaaagt gaaaaaaatt
     1981 atatagttat ttatccaaat aatgatttag gatttgaatt aattttgcaa aattatgaaa
     2041 ggctaaaaaa taatgaaaga tttaaaattt ttccttcttt aagatttga
//
LOCUS       DAPIWQ010000186         2076 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.188, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000186 DAPIWQ010000000
VERSION     DAPIWQ010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2076
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.188"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..556)
                     /locus_tag="RJ267_001725"
     CDS             complement(<1..556)
                     /locus_tag="RJ267_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389554.1"
                     /translation="MDFFFVEYRDPLVGLIILTILVFVVAVANYIWKIFANKDEEQKL
                     EKFIKKFEMDNAHKELLRNSSLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKCKDKQ
                     EREFIFLSLAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRSYKENLE
                     LLECLFELNEDVQKERDFIKALELC"
     gene            626..>2076
                     /locus_tag="RJ267_001726"
     CDS             626..>2076
                     /locus_tag="RJ267_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDV7389555.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCICPFHADKN
                     PSMHINPIKGFYHCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYTKEKQE
                     NKKELKSILPSLNAYFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLL
                     QNQKIPLEDAMSVGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGKVAILQGGKDPAE
                     LVAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLEPLV
                     ANSYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEKIHIAELELIAFLK
                     QHPDICNDFKQISDSVCFKHKILLDKILEKKGY"
BASE COUNT          788 a          311 c          292 g          685 t
ORIGIN      
        1 tacaaagttc taaagctttg ataaaatcac gctctttttg tacatcttca ttaagctcaa
       61 aaagacattc taaaagttct aaattttctt tataagaacg aagttttaaa taaacaattt
      121 ttaaaagttt taaggcttgt atatttcttg gacgcagttt taaagcttgt aataaaactt
      181 cttttgcacg ctctaaaaat cctgctttaa aataaacttt tgctaaagaa aggaaaataa
      241 attctctttc ttgtttatct ttacattttt caagagcaat caaataaatt tgagttgctt
      301 tttcaaattc cccgctttta gtaaaaattt cagccaaaaa acttaaattt ccaaaactca
      361 agctactatt tcttaataac tctttatgag cgttatccat ttcaaatttt tttataaatt
      421 tttcaagctt ttgttcttca tctttgttag caaatatttt ccaaatataa tttgcaacag
      481 ctacaacaaa tactaaaatg gttaaaatta taagccctac taaagggtct ctgtattcta
      541 caaagaaaaa atccatagtc tcgctctaaa aattttatgc caaattatag ccaaatcttt
      601 gtataatttt aacaaggttt gtaaaatgat aactaaagaa agtatagaaa atttatccca
      661 aagacttaat attgttgata ttatagaaaa ttatattgaa gtaaaaaaac aaggctctag
      721 ttttgtatgt atctgtcctt ttcatgcaga taaaaacccg tctatgcata tcaatcctat
      781 caaaggtttt tatcattgtt ttgcctgcaa ggctggtgga gatgctttta aatttgtaat
      841 ggattatgaa aaattaagtt ttgctgatgc agttgaaaaa gttgcaagcc ttagtaattt
      901 tactttgagt tatacaaaag aaaaacaaga aaataaaaaa gagctaaagt ctatactacc
      961 aagcttaaat gcgtatttta aagataatct caaacaccac aaagaagttt taacctatct
     1021 ttaccagaga gctttaaatg acaaagatat agccaaattc gaattaggtt ttgcaggagc
     1081 aagtgaagat agtataagat tattgcaaaa tcaaaaaatt cctttagaag atgctatgag
     1141 tgttggagct ttaaaaaaag atgaaaataa tgaattttac gcaagtttta tatggcgtat
     1201 cacctttcca atctacgatc ataaagactt attggtaggg tttggagggc gcactttaaa
     1261 tcccaatgta ccggcaaagt atgtaaattc accccaaaat atactttttg ataaaagtag
     1321 aattttttat gcttttaaca tcgctaaaga aaatatagcc aaaaaaaaag aaataatagt
     1381 atgtgaaggc tacatggatg caatagcttt tcacaaagca gggtttaaca atgctgtagc
     1441 agttcttgga acagcattaa ccgaacatca tctaccctta atccgccgtt atgatgcaaa
     1501 agtgatttta tgttttgaca atgatgaagc aggattaaaa gctgcgacac gatctgcatt
     1561 tttattaagc acaaacaaaa tagacggtaa agtggcaatt ttgcaaggcg gaaaagatcc
     1621 tgctgagctc gtagcaaaaa atgaaagcac aaaactccat aatatactcg atgaaggaat
     1681 agagcttggt gaattttata tcagacgctt aatatccact cattccataa tttctgctct
     1741 tgataaacaa aaagctttag aaactataca aaaattcacc tttaatcttg aacctttagt
     1801 ggcaaattct tacactagtc tagtttcaaa tttattaaaa gtggatgaaa aatttattgt
     1861 cttatcacaa aattcaaaaa aaaccataca aaccccttta atttctcaaa ataaatacaa
     1921 ttttcctaaa gaaaaaattc acattgcaga attagaactt atagcttttt taaaacagca
     1981 tccagatata tgtaacgatt ttaagcaaat tagtgatagt gtttgtttta aacataagat
     2041 tttattggat aaaattttag aaaaaaaagg ttatga
//
LOCUS       DAPIWQ010000187         2055 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.189, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000187 DAPIWQ010000000
VERSION     DAPIWQ010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2055)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2055)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2055
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.189"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(30..106)
                     /locus_tag="RJ267_001727"
     tRNA            complement(30..106)
                     /locus_tag="RJ267_001727"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(70..72),aa:Ile,seq:gat)
     gene            complement(115..190)
                     /locus_tag="RJ267_001728"
     tRNA            complement(115..190)
                     /locus_tag="RJ267_001728"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(155..157),aa:Ala,seq:tgc)
     gene            complement(293..1805)
                     /locus_tag="RJ267_001729"
     rRNA            complement(293..1805)
                     /locus_tag="RJ267_001729"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          540 a          513 c          404 g          598 t
ORIGIN      
        1 ttaaagcttc tttattcaaa tcttttttat ggtgggccta acaagacttg aacttgtgac
       61 ctcaccctta tcaggggtgc actctaacca gctgagctat aggcccttaa taaatggtgg
      121 agaatagcgg gatcgaaccg ctgacctcct gcgtgcaaag caggcgctct cccagctgag
      181 ctaattcccc ataaacaatt agctttatca tcaatctttg aaatctaaac aagaatcaat
      241 tgagtttata tattgaagta atagttgtga gacttattac tttgtactct agaaaggagg
      301 tgatccaacc gcaggttctc ctacggttac cttgttacga cttcacccca gtcgctgatt
      361 ccactgtgga cggtaactag tttagtattc cggcttcgag tgaaatcaac tcccatggtg
      421 tgacgggcgg tgagtacaag acccgggaac gtattcaccg tagcatggct gatctacgat
      481 tactagcgat tccggcttca tgctctcgag ttgcagagaa caatccgaac tgggacatat
      541 tttatagatt tgctccacct cgcggtattg cgtctcattg tatatgccat tgtagcacgt
      601 gtgtcgccct gggcataagg gccatgatga cttgacgtcg tccacacctt cctcctcctt
      661 acgaaggcag tctatttaga gtgctcggcc gaaccgttag caactaaata cgtgggttgc
      721 gctcgttgcg ggacttaacc caacatctca cgacacgagc tgacgacagc cgtgcagcac
      781 ctgtctctaa gttctagcaa gctagcaccc tcatatctct ataaggttct taggatatca
      841 agcccaggta aggttcttcg cgtatcttcg aattaaacca catgctccac cgcttgtgcg
      901 ggtccccgtc tattcctttg agttttaatc ttgcgaccgt actccccagg cggtacactt
      961 aatgcgttag ctgcattact gagatgacta gcatcccaac aactagtgta catcgtttag
     1021 ggcgtggact accagggtat ctaatcctgt ttgctcccca cgctttcgcg ccttagcgtc
     1081 agttgagttc cagcagatcg ccttcgcaat gggtattctt ggtgatatct acggatttta
     1141 cccctacacc accaattcca tctgcctctc cctcactcta gactatcagt ttcccaagca
     1201 gtttaatggt taagccatta gatttcacaa gagacttgat aatccgccta cgcgcccttt
     1261 acgcccagtg attccgagta acgcttgcac cctccgtatt accgcggctg ctggcacgga
     1321 gttagccggt gcttattcct taggtaccgt cagaattctt ccctaagaaa aggagtttac
     1381 gctccgaaaa gtgtcatcct ccacgcggcg ttgctgcgtc agggtttccc ccattgcgca
     1441 atattcccta ctgctgcctc ccgtaggagt ctggaccgtg tctcagttcc agtgtgactg
     1501 atcatcctct cagaccagtt aagcgtcata gccttggtaa gccattacct taccaactag
     1561 ctgatactat atagtctcat cctacaccga aaaactttcc ctactcaact tgtgttaagc
     1621 aggagtatag agtattagca gtcgtttcca actgttgtcc tcttgtgtag ggcagattaa
     1681 ctatacctta ctcacccgtg cgccactaat ccacttctag caagctagaa gcttcatcgt
     1741 tcgacttgca tgtattaggc acgccgccag cgttcactct gagccaggat caaactctcc
     1801 ataaaaaatt atagatagtt taatcttttt cttcaaagaa aaagttatga aagattaaaa
     1861 gaaaagcttt taatcttttt aattattaga ttgaatagat tttacataat tgcttatgcc
     1921 taaatctgtt ctggctcaat cgatcactta tttagatttc aaagattgac taataagatt
     1981 tgaataacaa tactaattta aaagaacaaa acaaaaaatc atttttaaaa gaaaagtttt
     2041 taaattaaaa aacaa
//
LOCUS       DAPIWQ010000188         2034 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.190, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000188 DAPIWQ010000000
VERSION     DAPIWQ010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2034)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2034)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2034
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.190"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..109
                     /locus_tag="RJ267_001730"
     CDS             <1..109
                     /locus_tag="RJ267_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7389556.1"
                     /translation="KITPAKWAKLIIESKIFDDLDKIFYKNALLIYKGG"
     gene            110..427
                     /locus_tag="RJ267_001731"
     CDS             110..427
                     /locus_tag="RJ267_001731"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HDV7389557.1"
                     /translation="MQRYGQIIKIKKEKIEEYKELHTKPYEGVCEMIKECNIQNYSIY
                     LFGEYLFAYFEYIGADFEVDMAKMARDESTQKWWKVTDPCQISLGYVGQKWLNMEEVF
                     HLD"
     gene            441..1880
                     /gene="aldA"
                     /locus_tag="RJ267_001732"
     CDS             441..1880
                     /gene="aldA"
                     /locus_tag="RJ267_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HDV7389558.1"
                     /translation="MTTYLNYIDGKFIPHNGEFIEVLNPATKEVISRVASASLEDTKR
                     AIEAAKKAQKVWEAKPAIERANHLKEIASLIRKNANFLTEVLMQEQGKTRVLASIEIN
                     FTADYMDYTAEWARRYEGEIIQSDRANEHIYLYKSAIGVIGGILPWNFPFFLIARKMA
                     PALLTGNTIVIKPSSETPNNAFEFAKLVSQSSLPKGVFNLVAGKGSVVGYELSSNENI
                     GMVSLTGSVEAGTRVMEAAAKNIIKVSLELGGKAPAIVCKDADIDLAVEAIKASRICN
                     NGQVCNCAERAYVHTSVYDEFVDKFVKAMSKVSVGNTLKGDFDMGPLVNQAGVDNALA
                     MLQRATAKGAIVECGGKIIDTSGYYFPASVLTNVKHEDEIMQKEIFAPILPIAKFDTL
                     DEAIDMANDCEYGLTSSIYTQNLDIAMRASREIKFGETYINRENFEAMQGFHAGFRKS
                     GIGGADGKHGLEEYLATHVVYLQYNTNKQ"
BASE COUNT          756 a          242 c          417 g          619 t
ORIGIN      
        1 aaagataact ccagctaagt gggccaagct tattatagag agtaaaattt ttgatgatct
       61 agataaaata ttttacaaaa atgctttatt aatttataaa ggaggatgaa tgcaaagata
      121 cggtcaaatc ataaaaataa aaaaagaaaa aatagaagaa tacaaagagc ttcacacaaa
      181 gccttatgaa ggggtttgtg agatgattaa ggaatgcaat atacaaaatt attccattta
      241 tttgtttggg gaatatttat ttgcatattt tgaatatata ggtgctgatt ttgaagtaga
      301 catggctaaa atggcaagag atgaaagcac acaaaaatgg tggaaagtaa cagatccttg
      361 tcaaatatct ttaggctatg taggacaaaa atggctaaat atggaagaag tatttcactt
      421 agactaaaaa aggagaaaaa atgacaactt atttaaatta tattgatgga aagtttatcc
      481 cacataatgg agaatttatc gaagttttaa atccagctac caaagaagtg atttcaagag
      541 tagctagcgc ttctttagaa gatactaaaa gagcgattga agcagccaaa aaagcacaaa
      601 aagtttggga ggctaaacca gcgattgaaa gagcaaatca tttaaaagaa atagctagtt
      661 taatacgcaa aaatgctaat ttcttaaccg aagttttaat gcaagagcaa ggaaaaacca
      721 gagttttggc tagcatagag attaatttta cagcagatta tatggattat acggccgaat
      781 gggctagaag atatgagggt gaaatcatac aaagcgatag ggctaatgag catatatatt
      841 tatataaaag tgctattggg gtaattggtg gaattttacc ttggaatttt ccatttttct
      901 taatcgcaag gaagatggca cctgctttac taacaggaaa tactattgtt ataaagccaa
      961 gcagtgaaac tccaaacaat gcttttgaat ttgcaaagct tgtttcgcaa agttctttac
     1021 caaaaggtgt ttttaactta gttgcaggta aaggcagtgt agtaggatat gaattatcaa
     1081 gcaatgaaaa tataggtatg gtaagtctta caggaagtgt tgaagcaggg actagagtaa
     1141 tggaagctgc agctaaaaat attatcaaag tttctttaga acttggtgga aaggcgccag
     1201 ctatagtgtg caaagatgcg gatattgatt tagcagtaga agcgattaaa gcaagtagaa
     1261 tttgcaataa cggacaagtt tgtaattgtg ctgaaagagc ttatgtgcat acaagcgttt
     1321 atgatgaatt tgtagacaaa tttgtaaaag ccatgagtaa agtaagtgtt ggaaatacct
     1381 taaaaggtga ttttgatatg ggaccattgg tcaatcaagc aggagttgat aatgctttgg
     1441 caatgcttca aagagctaca gctaaaggag cgattgtaga atgcggtgga aaaatcattg
     1501 atacaagtgg gtattatttt cccgcaagcg ttcttactaa tgttaaacac gaagatgaga
     1561 tcatgcaaaa agaaattttt gctccgattt tacctattgc taaatttgat acacttgatg
     1621 aagctattga tatggcaaat gattgtgaat atggtcttac aagttctatt tatacacaaa
     1681 atttagatat agcaatgaga gctagcagag aaattaaatt tggtgaaact tatattaatc
     1741 gtgaaaattt tgaggctatg caaggttttc atgcaggctt tagaaaaagt ggcataggcg
     1801 gagctgatgg aaaacatggt cttgaagaat atttagctac ccatgtggta tatttgcagt
     1861 ataatactaa taaacaatga tttttatcct atctaaattt ttagatagga gttattataa
     1921 tcttggaatc aagtatgatg ctttataact atggattaaa cactttttta gtaatttctt
     1981 aaaatcaatt ttggaatttt tcattttgtc taaaatgagt aagattattt ttat
//
LOCUS       DAPIWQ010000189         2032 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.191, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000189 DAPIWQ010000000
VERSION     DAPIWQ010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.191"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..836
                     /locus_tag="RJ267_001733"
     CDS             <1..836
                     /locus_tag="RJ267_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="4Fe-4S cluster-binding domain-containing
                     protein"
                     /protein_id="HDV7389559.1"
                     /translation="KKEHYKVLDFHLRKITPQAFLEIVEIHLAESCNLNCFGCNHFSQ
                     IAEKEFPDIEIFKKDMQRLSEISKGIVGTFRLMGGEPLLNPNCIQFFDITRYFFPKSA
                     IWLVTNGILLDKQNEDFWNSCQRNKMQIRPTKYPIKINWDLIKDKCDQYDIPLIFFNN
                     GELEKTSWKFSLDPSGNCDNYHSFTNCSMANHCVQFKDGKLFTCTFPAHVQHFNKKYG
                     NHFEVCEFDFIDIYKAKDYQEILFFLSKPIPFCRYCKVSQWAEIGKWRSSNKTKHEYL
                     I"
     gene            846..>2032
                     /locus_tag="RJ267_001734"
     CDS             846..>2032
                     /locus_tag="RJ267_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDV7389560.1"
                     /translation="MIKKILLITPELEYTGALNSFKRICEVLLNNKYAVDIWTYNEGP
                     YISEFDKLGVYVEVISEDDIDSKWVHERISKYSLVIANTIVVYKCVELIQNLTPVVWY
                     IREAENLPDFFWKPERKLALEKAKKLYVVSEYAKDFIIHNYNKNVEVLHNYVDDVFYE
                     KHDDFLKQIKSDKLKFLALGTIEKRKGYDVLLQAFIDLPVDIRDQCELHFAGRFWEGA
                     KDFFPKILSLAKKFPNIFYHGELRDRKKIHSLIFQCNVMVVPSRDESCSLVALEGAMM
                     SKPLILTENIGAKYILDENSGWLVKTGSVDSLKNAFIQAYKNKNKLDAMGANSRNNYL
                     QTSTYEIYEKNILKMVRDEICKNQYLYRINQENYVLFSFDIFDTLISRNIAKPSAVFL
                     IMK"
BASE COUNT          741 a          219 c          346 g          726 t
ORIGIN      
        1 taaaaaaaga gcactataaa gtattagatt ttcatttaag aaaaattaca cctcaagctt
       61 ttttagagat tgttgaaatt catttagccg aatcatgtaa tttaaattgt tttggttgta
      121 atcatttttc acaaatagct gaaaaagaat ttccagatat agaaattttt aaaaaagata
      181 tgcaaagact ttcagaaata tctaaaggta ttgtcggaac ttttagattg atgggtggcg
      241 aacctctttt aaatcccaat tgtatacagt tttttgacat tacaagatat ttttttccaa
      301 aaagtgccat ttggttggta actaatggta ttttacttga taagcaaaat gaggattttt
      361 ggaattcatg ccaaaggaat aaaatgcaaa ttcgtccaac aaagtatcct ataaaaatta
      421 attgggattt gattaaagat aagtgtgatc aatatgatat ccccttgata ttttttaaca
      481 atggagagtt ggaaaaaact tcttggaaat tttctctaga tccttctgga aattgtgata
      541 attaccatag ttttacaaat tgtagtatgg caaatcactg tgttcagttt aaagatggaa
      601 agctatttac ttgtaccttt cctgcacatg tacagcattt taataaaaag tatggaaatc
      661 attttgaagt ttgcgaattt gactttattg atatttataa agccaaggat tatcaagaaa
      721 ttttattttt tctttctaag cctattcctt tttgtagata ttgcaaggta tcacaatggg
      781 cagaaattgg aaaatggcgt tctagcaata aaacaaaaca tgaatattta atttgaaagt
      841 gtattatgat aaaaaaaatt cttcttatta ctccagaact agaatataca ggagctttaa
      901 atagttttaa aagaatatgt gaagtattat tgaataataa atatgctgta gatatttgga
      961 cctataatga aggaccttat attagtgagt ttgataaatt aggcgtatat gttgaagtta
     1021 tttcagaaga tgatattgat tctaaatggg tgcatgaaag aatttcaaaa tattcattgg
     1081 tcatagcaaa tactatagta gtatataaat gtgttgagtt gatccaaaat ttaactcctg
     1141 ttgtttggta tattagagag gctgaaaatc ttcctgattt tttttggaag ccagaaagga
     1201 agttggcttt agaaaaagct aaaaaacttt atgtggttag tgagtatgca aaggatttta
     1261 taattcataa ttataataaa aatgtagagg ttttacataa ttatgtagat gatgtttttt
     1321 atgaaaagca tgacgatttt ttaaaacaga taaagtcaga taaattaaaa tttttagctt
     1381 tagggactat tgaaaaaaga aaaggttatg atgtgttgtt acaagctttc attgatcttc
     1441 cagtagatat aagggatcaa tgtgagcttc attttgctgg aagattttgg gagggagcta
     1501 aagatttttt ccccaagatt ttatcattag ccaaaaaatt tccaaacatt ttttatcacg
     1561 gggaattaag agatagaaaa aaaatacact ctttgatttt ccaatgcaat gttatggttg
     1621 taccatctag agatgaatcg tgctctttgg ttgcattgga aggtgcgatg atgtctaaac
     1681 cattgatatt aactgaaaat attggagcta aatatatttt agatgaaaat agtggatggt
     1741 tggttaaaac cggtagcgta gattctttaa aaaatgcttt tatacaagcg tataaaaata
     1801 aaaataagtt agatgcaatg ggtgcaaatt ctaggaataa ttatcttcaa acatccactt
     1861 atgaaattta tgaaaaaaat attttaaaaa tggttcgaga tgaaatttgt aaaaatcaat
     1921 atttatatcg tattaatcaa gaaaattatg tacttttttc ttttgatatt tttgacactt
     1981 taatttctag aaatatagct aaacctagtg ctgtattttt aataatgaaa ca
//
LOCUS       DAPIWQ010000190         2031 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.192, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000190 DAPIWQ010000000
VERSION     DAPIWQ010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2031
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.192"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            63..>2031
                     /locus_tag="RJ267_001735"
     CDS             63..>2031
                     /locus_tag="RJ267_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7389561.1"
                     /translation="MQKKSFLKIYGLIPFLLIAFINAFVDLGHKIIIQNTIYKAYEGS
                     EQLFLNAIVNALILLPFILMLSPSGFLADKYPKNIVMKISAIFNVILTLIICICYYSG
                     AFWMAFIFTFIMGAQAAIYSPSKYGFIKELVGKDFLAMGNGVINAVSIVAILAGMALF
                     SLSFESLYSSMYNQTDEILKEVAPLGIVLILFSCIEVFFAWRLPKLKQTNKDLVFNKK
                     DYIRGKLLINNLKLVFKNKTIWLCIIGISFFWAISQLYLVSFPVFAKNELFIENTFYV
                     QISLAFSGIGVILGSLVAGKFSKNYIELGFIPLGALGMFLMAFLMPYFISLLSYSFLF
                     FFFGFCGALFIIPLNTLIQFHAKENELGQILAGNNFFQNIAMLGFLLLATLFVKFEIN
                     VIYLFYFIALVTFIGSFYILLKLPFSLVRILLSIAFLQRYRLLVEGFENIPEKGGALL
                     LGNHISFIDWAVVQMAIPRKIYFVMERSIYSKWYIKIFLDKFGIIPVSSTGSKTSLEL
                     IAKHIKEGNLVCLFPEGTLSRHGQLNEFKAGFELACECLSEDDGKIIPFYIRGLWGSA
                     FSRSDEEFSARNRTLNKRKIAIAFGKAMPLHSKKDEVKAKVFELSFMAWKSQCEAMHT
                     IARAWIDTAKKNLNQIAIIDTLAGDISYRKML"
BASE COUNT          644 a          246 c          337 g          804 t
ORIGIN      
        1 aattttccta aaaactgata aattcttttg taaaataagc gctaattgac gaggtttaaa
       61 taatgcaaaa aaaatctttt ttgaaaattt acggattaat tcctttttta cttatagcat
      121 tcatcaatgc ttttgtggat ttgggacata aaattattat tcaaaatact atttataagg
      181 cctatgaagg aagtgagcag ttatttttaa atgctatagt taatgctttg attttacttc
      241 cttttattct tatgctttct ccttcgggtt ttttagcgga taaatatcca aaaaatattg
      301 taatgaaaat ttcagcaatt ttcaatgtta tactcacttt aataatttgc atttgttact
      361 atagcggtgc tttttggatg gcttttattt ttacttttat aatgggagca caagcagcga
      421 tttattcacc aagtaaatac ggttttatta aagaactcgt gggaaaagac tttcttgcta
      481 tgggtaatgg tgtaattaat gcggtaagca ttgtggcaat cttagcggga atggctttat
      541 tttctttaag ctttgaaagt ctttatagtt ctatgtataa tcaaacagat gaaattttaa
      601 aagaagtagc gcctttagga attgtgctaa ttttattttc ttgtatcgaa gtattttttg
      661 cgtggcgttt acctaagctc aaacaaacaa ataaagattt agtttttaat aaaaaagact
      721 atattcgtgg aaaacttcta ataaataatc ttaagcttgt ttttaaaaat aaaactattt
      781 ggctttgtat aattggaatt tcattttttt gggctatatc tcaactttat cttgtcagct
      841 ttcctgtctt tgctaaaaat gaacttttca tagaaaatac tttttatgtg caaatttcac
      901 tcgctttttc tggtatagga gtgattttag gctctttagt agctggtaaa ttttcaaaaa
      961 attatataga acttggattt attccacttg gtgcattggg tatgttttta atggcttttt
     1021 taatgcctta ttttataagt ttattaagtt atagtttttt atttttcttt tttggatttt
     1081 gcggagccct ttttatcatt cctttaaata ctttaatcca atttcatgct aaagaaaatg
     1141 aattaggaca aattcttgca ggaaataatt tttttcaaaa tattgccatg ttgggatttt
     1201 tgctcttggc aactttattt gtaaaatttg aaatcaatgt gatttatttg ttttatttta
     1261 ttgctttggt aacctttata ggaagttttt acatactttt aaaactcccc ttttctttag
     1321 tgcgtatact tttaagcata gcttttttac aacgataccg tttacttgtg gaaggttttg
     1381 aaaatatacc agaaaaaggt ggagctttac ttttgggtaa tcatatttct tttattgatt
     1441 gggctgttgt acaaatggca attccaagaa aaatttattt tgttatggaa agaagtattt
     1501 attctaaatg gtatattaaa atttttcttg ataaatttgg tattattcct gtatcaagta
     1561 caggaagtaa gacgagttta gaactgatag caaagcatat taaagaaggt aatttagttt
     1621 gcttatttcc tgaaggtaca ctttcgcgac atgggcaatt aaatgaattt aaagcaggat
     1681 ttgaattagc ttgtgaatgt ttaagtgaag atgatggaaa aattattcct ttttatataa
     1741 gagggctttg gggtagcgct ttttcaagaa gtgatgaaga attttcagca agaaaccgca
     1801 ctttaaataa aagaaaaatt gctatagctt ttggtaaagc tatgcctttg cattctaaaa
     1861 aagatgaagt taaagctaaa gtttttgaac tttcttttat ggcttggaaa tcacaatgcg
     1921 aagctatgca tactatagca agagcttgga tagatacagc taaaaaaaat ctaaatcaaa
     1981 tagctattat cgatacacta gctggagata tttcttatag aaaaatgttg a
//
LOCUS       DAPIWQ010000191         1976 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.193, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000191 DAPIWQ010000000
VERSION     DAPIWQ010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1976)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1976)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1976
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.193"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            33..1064
                     /locus_tag="RJ267_001736"
     CDS             33..1064
                     /locus_tag="RJ267_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HDV7389562.1"
                     /translation="MKKNIVFFEVKGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKDEIYKYVKENFDGYVSRINPGNLKEENEYFDMLRKLCADKLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGNVSGDSLPLNTKIKCTEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAKYRYDKPEDWKTLVDMFLGEL
                     PKVREKLGNYDLPLIWTADFILDTDEKGNDKYVLGEINCSCVGFTSHLELADEVASNI
                     INIVSKTKA"
     gene            complement(1306..1656)
                     /locus_tag="RJ267_001737"
     CDS             complement(1306..1656)
                     /locus_tag="RJ267_001737"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389563.1"
                     /translation="MSYLIQNIKTTNDLKEKLYTVSKKWLLEHILYKDVKVEQYRRSS
                     LTSEDDGEVSFEEVKEEKDDENTVYLYTCECVEQMHDVPFGIHQKIQLKGVKFKCKKC
                     KEAIQFYKKYSENF"
     gene            complement(1632..1928)
                     /locus_tag="RJ267_001738"
     CDS             complement(1632..1928)
                     /locus_tag="RJ267_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HDV7389564.1"
                     /translation="MLLDKLIPTWNEKYSIHDTMIDIQHQKLCELASKVESAVYKFVK
                     REELKEILTELFNYMKEHFSNEEDYMQEIHYPYLNEHKIMHKISFVICLILYKT"
BASE COUNT          640 a          242 c          344 g          750 t
ORIGIN      
        1 aattatttat atcttagata aggagtaaaa taatgaaaaa aaatattgtt tttttcgaag
       61 ttaaaggtgg gagtgataaa ggtgaagatg gctatagaaa agataccatg cctatggtaa
      121 atgccttaaa agctaagggt tggaatgctg aggtgatttt ttttgaagtg ggtaaaaaag
      181 atgaaattta caaatatgtg aaagaaaatt ttgatggtta tgtttctcgc atcaatcctg
      241 gcaatcttaa agaagaaaat gagtattttg atatgttaag aaaactttgt gccgataagc
      301 ttgtaggtat gcctcatcct gatgctatga taggttatgg tgctaaagat gcacttacaa
      361 aattagcaga tactgatctt gttccaagcg atacttatgc ttactatgat attaagactt
      421 ttaaagaaaa ttttccaaaa agtttggcta aaggtgaaag ggttttaaaa caaaatcgtg
      481 gctctacagg agagggaatt tggcgtgtga gtgtagaggg taatgttagt ggagatagtt
      541 tgcctttaaa cacaaaaatc aaatgtacag aagctaagga taatcatgta gaacatagag
      601 agcttgggga atttatggat ttttgcgagc aatatatcat aggtgataat ggtatgcttg
      661 tggatatgac ttttttaccg cgcattaaag aaggtgaaat cagactttta atgctttata
      721 acacccctgt aaatgtagtg cataaaaaac cagccgaaga tgctgatgct ttttctgcta
      781 cgctttttag tggggcaaaa tatcgctatg ataagccaga agattggaaa actttggtgg
      841 atatgttttt aggcgagctt cctaaggtaa gggaaaaatt aggcaattac gacttaccat
      901 tgatttggac ggctgatttt attttagata ctgatgaaaa gggcaatgat aaatatgttt
      961 taggcgagat taattgttct tgtgtaggtt ttacttctca tttagaactt gctgatgaag
     1021 tagcttcaaa tattattaat attgtaagta aaactaaggc ttagtcttta agcttaatgt
     1081 ccattttatt attgtaaaat ggacattctt tttctattgt ttttaagttt gagctatatt
     1141 ctatcgagaa aaaattttca caaaatgagc attttgtatc tttggttagt ataggatagg
     1201 aatagtcaaa tttatccaaa ataaaatatt ttattttttt atccttaaat ttccttcttt
     1261 gtctaactta tactttattt attattttaa cgcataaata gttaattaga aattttctga
     1321 atatttttta taaaactgta tggcttcttt gcatttttta catttaaatt ttacgccctt
     1381 aagttgaatt ttttgatgaa ttccaaatgg tacatcatgc atttgttcta cgcattcgca
     1441 tgtataaaga taaactgtat tttcatcatc tttttcttct ttgacttctt caaagcttac
     1501 ttccccatca tcttcagaag ttaaagaaga tcttctgtat tgttcaactt tcacatcttt
     1561 atagagtata tgttctaaaa gccatttttt agaaactgtg taaagcttct cttttaaatc
     1621 attagtggtt tttatgtttt gtataagata agacatatca cgaatgatat tttatgcatg
     1681 attttgtgtt catttaaata aggataatga atttcttgca tataatcttc ttcattacta
     1741 aaatgttctt tcatatagtt aaaaagttct gttaaaattt ctttgagttc ttctcgtttt
     1801 acaaatttat aaacagcact ttcaaccttg cttgcaagtt cacaaagttt ttggtgttga
     1861 atgtcaatca ttgtgtcatg aatactgtat ttttcattcc aagttggaat taatttatct
     1921 aaaagcacct tctttaattt ttatatttaa aattaattta atatatttga gtgaaa
//
LOCUS       DAPIWQ010000192         1959 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.194, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000192 DAPIWQ010000000
VERSION     DAPIWQ010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1959)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1959)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1959
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.194"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(36..1154)
                     /gene="truD"
                     /locus_tag="RJ267_001739"
     CDS             complement(36..1154)
                     /gene="truD"
                     /locus_tag="RJ267_001739"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HDV7389565.1"
                     /translation="MNLEEENTIFKPLYSLKHSPINAYFSKNSDDFVVRERPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHPKLKILEIFTHENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQG
                     FANYFGYQRFGKFGDNYKEGLEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFSEKELIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     GRFKARDISAMGLLIGAKAYETGEGLALNLENEIFKDTLEFKAKMQGSRRFMWGYLEE
                     LKWRYDEEKAHFCIEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(1123..1944)
                     /locus_tag="RJ267_001740"
     CDS             complement(1123..1944)
                     /locus_tag="RJ267_001740"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HDV7389566.1"
                     /translation="MNKEDFIIKAFLNKKNGDDGAIIDDWCFSKDLFFENVHFKREWF
                     SLEQIATKAMLVNISDAISMNAVPKYALLGLALPKNLSENEIKALQKGFLKTARKFNI
                     KIIGGDTISNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNG
                     GTLKPNHVFIKPKLRASFFYEIAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLD
                     DYALYSGEEYEILFAFDEKERQNIEIIAKKHGVKLNIFGKAVKGKYEFRGREHHF"
BASE COUNT          648 a          379 c          214 g          718 t
ORIGIN      
        1 gtaaaaatca cgtaaaaatt taactcataa ttatttcatt caaacaaatt tttatgcaaa
       61 atttcttcta aaaccacagt agcataagag cctttttgca agaaaaactc tatacaaaaa
      121 tgagcttttt cttcatcata acgccatttt aactcttcta aatatcccca cataaagcgt
      181 cttgaacctt gcattttagc cttaaactcc aaagtatctt taaaaatttc attttctaaa
      241 tttaaggcca aaccttctcc tgtttcataa gccttagcac cgattaaaag ccccatggcg
      301 cttatatctc ttgccttaaa acgcccaagc tcagcactta aatcctcgca taaaaaacac
      361 tttccaaaag gataatgccc taaaacctca ccttttaaaa gcttaaaaaa ttgttcttgt
      421 tttttaagtt ccttagcttc ttctttagaa attttataaa tttggatcaa ttctttttcg
      481 ctaaaatcat ttgcaaaatg tgataactcc actcttttac tcaaatagcg attaaaaagc
      541 tcactttgaa aagctgaaat taaaaactct ttcattttta catttttcat ctttttgcca
      601 cgcaaaattt caagcccttc tttgtaatta tccccaaatt ttccaaaacg ctgatagcca
      661 aaataattcg caaaaccttg tttatccaaa ttcatcaaag cttgttctag ttttaaagca
      721 tcgcttggta aaactttttt taagcgtatg aaaaaagaat ttccttttaa atggcctatt
      781 cttagcttgt tctcatgggt aaaaatttct aaaattttaa gtttaggatg agaaaaattt
      841 gacaaaaaac tctcaaattt tttaggcata gaaaggtatt gaaaggttga tccttgcttg
      901 tctttaagcc ctgcataacc aaaatctctt attttaaccc cgcttgcttc acttaaaatt
      961 tttaaagctt catttgtggt taaatctttt ttattgatat gcaaaataag atgctcaccc
     1021 ttaccgctaa attcatacaa aggcctttca cgcactacaa aatcatcgct atttttacta
     1081 aaatacgcat taataggact gtgttttaaa ctatacaaag gcttaaaaat ggtgttctct
     1141 tcctctaaat tcatattttc ctttcactgc ttttccaaag atatttaatt tcacgccgtg
     1201 ttttttggct attatttcta tattttgccg ttctttttca tcaaaagcaa acaaaatttc
     1261 atattcttct ccgctataaa gcgcataatc atcaagtttt ttaaaccaag aaataccgca
     1321 tttatttaaa gctaaaagcc ttgataaatc cttgcttaaa ccatctgaaa tatccatagc
     1381 acaagaaatt aaaggtgcga tttcataaaa aaaactagct cttaattttg gctttataaa
     1441 tacatggttt ggttttaaag tgcccccatt ttgtaaaatt tcaagccctt ttaaacttcg
     1501 tcctaatttt cccgtataag caagtaaatg cccctttttt aaaccttttc taaaaacagc
     1561 tttatcgtta atctttgaaa tgatagtaag actaatgtct attttatcat tgcttatagt
     1621 atcaccgcct atgattttta tattaaattt cctagctgtt tttaaaaaac ctttttgcaa
     1681 ggctttgatc tcattttcgc ttaaattttt tggtaaagca agtcctaaaa gtgcgtattt
     1741 tggtacagca ttcattgaaa tagcatctga gatattaaca agcattgctt ttgtagcaat
     1801 ttgctctaag ctaaaccact ctcttttaaa atgcacattt tcaaaaaaca aatccttact
     1861 aaaacaccaa tcatcaataa tagctccatc atcaccattt tttttattta aaaaagcttt
     1921 gataataaaa tcttctttgt tcataatgcg tgattttat
//
LOCUS       DAPIWQ010000193         1849 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.195, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000193 DAPIWQ010000000
VERSION     DAPIWQ010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1849)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1849)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1849
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.195"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..>1849
                     /locus_tag="RJ267_001741"
     rRNA            <1..>1849
                     /locus_tag="RJ267_001741"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          584 a          332 c          496 g          437 t
ORIGIN      
        1 gcgaatggtg gatgccttga ctggtaaagg cgatgaagga cgtactagac tgcgataagc
       61 tacggggagc tgtcaagaag ctttgatccg tagatttccg aatggggcaa cccaatgtat
      121 agagatatac attacctata taggagcgaa cgaggggaat tgaaacatct tagtaccctc
      181 aggaaaagaa atcaatagag attgcgtcag tagcggcgag cgaaagcgca agagggcaaa
      241 cccagtgctt gcactggggg ttgtaggact gcaatgtgca agagctgagt ttagcagaac
      301 attctggaaa gtatagccat agagggtgat agtcccgtat gcgaaaaaca aagcttagct
      361 agcagtatcc tgagtagggc gggacacgag gaatcctgtc tgaatccggg tcgaccacga
      421 tccaacccta aatactaata ccagatcgat agtgcacaag taccgtgagg gaaaggtgaa
      481 aagaactgag gtgatcagag tgaaatagaa cctgaaacca tttgcttaca atcattcaga
      541 gccctatgta gcaatacagg gtgatggact gccttttgca taatgagcct gcgagttgtg
      601 gtgtctggca aggttaagca aacgcgaagc cgtagcgaaa gcgagtctga atagggcgct
      661 tagtcagatg ctgcagaccc gaaacgaagt gatctatcca tgagcaagtt gaagctagtg
      721 taagaactag tggaggactg aacccatagg cgttgaaaag ccccgggatg acttgtggat
      781 aggggtgaaa ggccaatcaa acttcgtgat agctggttct ctccgaaata tatttaggta
      841 tagcgttgtg tcgtaatata agggggtaga gcactgaatg ggctagggca tacaccaatg
      901 taccaaaccc tatcaaactc cgaatacctt atatgtaatc acagcagtca ggcggcgagt
      961 gataaaatcc gtcgtcaaga gggaaacaac ccagactacc agctaaggtc cctaaatctt
     1021 acttaagtgg aaaacgatgt gaagttactt aaacaaccag gaggttggct tagaagcagc
     1081 catcctttaa agaaagcgta atagctcact ggtctagtga ttttgcgcgg aaaatataac
     1141 ggggctaaag taagtaccga agctgtagac ttgcgcacaa cttagattat ttaagtttag
     1201 aatatgagaa actaagttat gtttagttat atttttactg atttttatag agtaaagata
     1261 gaaataaaac ttagtaaaat cagtaaaaat attcttaggc taaagttaag tagtttaagt
     1321 tgtgtgcaag tggtaggaga gcgttctatt tgcgtcgaag gtataccggt aaggagtgct
     1381 ggagcgaata gaagtgagca tgcaggcatg agtagcgata attaatgtga gaatcattaa
     1441 cgccgtaaac ccaaggtttc ctacgcgatg ctcgtcatcg tagggttagt cgggtcctaa
     1501 gtcgagtccg aaaggggtag acgatggcaa attggttaat attccaatac caacattagt
     1561 gtgcgatgga aggacgctta gggctaaggg ggctagcgga tggaagtgct agtctaaggt
     1621 cgtaggaggt tatacaggca aatccgtata acaatactcc gagaactgaa aggctttttg
     1681 aagtcttcgg atggatagaa gaacccctga tgccgtcgag ccaagaaaag tttctaagtt
     1741 tagctaatgt tgcccgtacc gtaaaccgac acaggtgggt gggatgagta ttctaaggcg
     1801 cgtggaagaa ctctctttaa ggaactctgc aaaatagcac cgtatcttc
//
LOCUS       DAPIWQ010000194         1849 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.196, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000194 DAPIWQ010000000
VERSION     DAPIWQ010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1849)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1849)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1849
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.196"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..296)
                     /locus_tag="RJ267_001742"
     CDS             complement(<1..296)
                     /locus_tag="RJ267_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7389567.1"
                     /translation="MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQA"
     gene            complement(393..>1849)
                     /locus_tag="RJ267_001743"
     CDS             complement(393..>1849)
                     /locus_tag="RJ267_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7389568.1"
                     /translation="KVYKVVLFDCVAKDLEIQIAMIFDQQSILEYLSLYEMFISSHYY
                     LKYYETSILSLNELCIKSASVAIRNADITCFLPLLTHGQFLQNIPSMLESIPFQRILS
                     ERKNKFENAIVVSAGPSLAKQLPLLKAYQDKAVIFCADGALSMLEKEGIVPDYVTNLD
                     FTDLAMKFFQNKENLKQSIIALECATHPNVARSLKAENCMIILRNKALYQRFNLSDFG
                     YIDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDEKGNSHSQGFSYGEQFSGEKTVPT
                     LKTQAYAGKGEVLTHITWNDYRIKLEYLFACNSKEAKFYNATEGGARINFTEELSFKE
                     CCEKLLTKEKPQFELPKSLTKNRSDKLLVKFKEKIQKDQDNAKRFLDDALALKQILEN
                     ILSKDFILPLEFLEKVYQNIENFNHSLDEDEFIQDETLRGAFAYRGKLISDVLKLHIQ
                     DKTHFITAYIKAYHEWLLYFMEKLEQKYKSLSKV"
BASE COUNT          622 a          303 c          253 g          671 t
ORIGIN      
        1 gcttgagttg ccttagtttt aatagtatct aagattttaa gttgctcatc catagcctta
       61 tcagcagttt gtaagatacc taaagcatcg ttaccattag atatagcttg acctaaagta
      121 ttagcttgag atcttaaact atctgctatc gccatccctg aagcatcatc tgctgcggag
      181 ttgattctaa gacctgaact aagtctgctt aaagaagcat ctaaactttt actatttaaa
      241 tcagcgtttg ctttagcatt taaagctgca acattggtgt taatacgaaa tcccatttta
      301 aatcctttta aaaaaattca agctcatcca tgaacttgtt aaataccata tcgtgcaatc
      361 aaaaaaatat tttatacttt agcaataaaa tttcatactt ttgacaaaga cttgtatttt
      421 tgttctaatt tttccataaa ataaagcaac cattcatggt aagctttgat ataggctgtg
      481 atgaaatgcg ttttatcttg tatatgaagt tttaatacat cggaaattaa ttttccacga
      541 taagcaaagg ctcctcttaa agtttcatcc tgtataaact catcttcatc taaagagtga
      601 ttgaaatttt ctatattttg ataaactttt tctaaaaatt ccaaaggcaa gataaaatct
      661 ttactgagta tattttctaa aatttgtttt aaagctaaag catcgtctaa aaatctttta
      721 gcattatctt gatctttttg tattttttct ttgaatttaa ctaggagttt atcacttcta
      781 tttttagtta aacttttggg aagttcaaat tgaggttttt cttttgtaag gagtttttca
      841 caacattctt taaaggaaag ttcttcagta aaattaatcc ttgctccacc ttcagtagca
      901 ttgtaaaatt tagcttcttt actgttgcaa gcaaaaagat attcaagttt tatacgataa
      961 tcattccagg ttatatgagt taaaacttct cctttgcctg cataagcttg ggtttttaag
     1021 gtaggcacag ttttttctcc gctaaattgc tcgccataac taaaaccttg tgagtgtgaa
     1081 tttccttttt catcaaaagc taaatcttgt cctatcatga taatattttt aaatcctaaa
     1141 gccaaagcta aagtataaga aaaatgactt acatgagtac ctgtatcgat atagccaaag
     1201 tcgctaagat tgaagcgttg ataaagagct ttatttctta aaataatcat acaattttca
     1261 gcctttaaac tacgtgcgac attaggatgt gtagcacact caagagcaat aatgctttgt
     1321 tttaaatttt ctttattttg aaaaaatttc attgctagat cagtaaaatc taaattcgta
     1381 acataatcag gcacgatgcc ttctttttca agcatactta aagccccatc agcacaaaag
     1441 atcactgctt tatcttgata agctttaagt aaaggaagtt gtttagctaa actaggtcct
     1501 gcagaaacta ctatagcatt ttcaaatttg ttttttcttt cacttaagat tctttgaaaa
     1561 ggaatgcttt caagcataga agggatgttt tgtaaaaact gtccatgtgt tagcaaaggt
     1621 aaaaaacaag taatatctgc attccttatt gctacacttg cacttttaat acaaagttca
     1681 tttaaagata aaatagaagt ttcatagtat ttaagataat aatgcgagct aataaacatt
     1741 tcatataaac ttaaatactc taaaatactt tgctgatcaa aaatcatagc aatttgaatt
     1801 tctaaatcct ttgcaacaca gtcaaataat acaaccttat aaactttca
//
LOCUS       DAPIWQ010000195         1845 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.197, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000195 DAPIWQ010000000
VERSION     DAPIWQ010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1845)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1845)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1845
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.197"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            48..620
                     /locus_tag="RJ267_001744"
     CDS             48..620
                     /locus_tag="RJ267_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HDV7389569.1"
                     /translation="MKKVLLSSLVAVSLLSTGLFAKEYTLDKAHTDVGFKIKHLQISN
                     VKGNFKDYSAVIDFDPASAEFKKLDVTIKIASVNTENQTRDNHLQQDDFFKAKKYPDM
                     TFTMKKYEKIDNEKGKMTGTLTIAGVSKDIVLDAEIGGVAKGKDGKEKIGFSLNGKIK
                     RSDFKFATSTSTITLSDDINLNIEVEANEK"
     gene            complement(625..1581)
                     /locus_tag="RJ267_001745"
     CDS             complement(625..1581)
                     /locus_tag="RJ267_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389570.1"
                     /translation="MFLLDFLISLSFIFEISALVLSFYFKNSKIFFLTLVLLGAKLPY
                     FYTSFFQANLFVALFLPMIFTLFCVGKHHVLILNKKNIASITTLIFIGILSIILPRNT
                     TFNSAGLEFHFIALDFFKPVSELGFLFFLVGLILIFIKTFKTKEYYLLIAFFTAYFQF
                     LFQEGAGIRYFEFASLVFCFYLLNHAYRLAFFDTLTKLPNEKSLTRFTKGKNNYIIAL
                     LHFNELKDTKESYTKLILKQIAKILKRFRAKIFIVENDFILIFNDKNQALNHLAFLES
                     TLKNTEFNLENENFKPDFKLIWQESEENLDKNLQSLRARLLD"
     gene            complement(1643..>1845)
                     /locus_tag="RJ267_001746"
     CDS             complement(1643..>1845)
                     /locus_tag="RJ267_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDV7389571.1"
                     /translation="KSKRDMAYELDIDVSTLYNWRKYKPNLYRIVMLGFKFDELLDNS
                     KKTHEELLHIEQTIQDEIAKFK"
BASE COUNT          743 a          214 c          259 g          629 t
ORIGIN      
        1 atctaataaa atttttatat tgaaaattac tataaaaaag gaaaaaaatg aaaaaagttt
       61 tattgagttc attggttgcg gtgtctttgt taagcacagg tttgtttgct aaagaatata
      121 ctttagataa agcacataca gatgtaggtt ttaaaatcaa acatttacaa attagcaatg
      181 taaaaggaaa tttcaaagat tattctgcgg tgattgattt tgatcctgcg agtgctgaat
      241 ttaaaaagct tgatgtaact ataaaaatcg catctgtaaa tacagaaaat caaacaagag
      301 ataatcactt acaacaagat gattttttca aagcaaaaaa atatcctgat atgactttta
      361 caatgaaaaa atatgaaaaa atcgataatg aaaaaggcaa aatgacagga actttaacta
      421 tagctggagt ttctaaagat atcgttttag atgctgaaat cggcggtgta gctaaaggca
      481 aagatggaaa agaaaaaata ggattttctt taaatggaaa aatcaaacgc tctgatttta
      541 aatttgcaac aagtacttca actattactt taagtgatga tattaattta aatatcgaag
      601 ttgaagcgaa cgaaaaataa ttttttagtc taagagtctt gctcttagac tttgtaaatt
      661 tttatccaaa ttttcttcac tttcttgcca aatcaattta aaatccggtt taaaattttc
      721 attttctaaa ttaaattccg tgtttttcaa ggtggattct aaaaaagcaa gatgatttaa
      781 agcttgattt ttatcattaa aaattaaaat aaaatcattt tctacgataa aaatttttgc
      841 tctaaagcgt tttaaaattt ttgcaatttg ttttaaaatg agtttggtat agctttcttt
      901 ggtatctttt agttcattaa aatgaagcaa ggcaatgata tagttgtttt ttccttttgt
      961 aaagcgtgta aggctttttt cattgggtag ctttgttaag gtgtcaaaaa aagctaacct
     1021 ataagcgtga tttaaaagat aaaaacaaaa aaccaaactt gcaaattcaa aatatcttat
     1081 tcctgctcct tcttggaata aaaattgaaa atacgcagta aaaaatgcga taagaagata
     1141 atattcttta gttttaaagg ttttgataaa aatgagtatt aagccgacta aaaaaaataa
     1201 aaatcctaat tcactcacag gtttaaaaaa atctaatgca ataaaatgaa attctaaacc
     1261 agcactatta aaagtagtat ttctaggtaa aatgatactt aaaatgccta taaaaataag
     1321 ggttgtaatt gaagcgatat tttttttatt taaaattaaa acatgatgtt ttccaacgca
     1381 aaatagagta aaaatcatag gtaaaaataa agctacaaat aaattagctt gaaaaaaact
     1441 tgtataaaaa taaggcaact tggctcctaa tagcactaaa gttaaaaaga aaatttttga
     1501 atttttaaag taaaaggata atacaagtgc tgaaatttca aaaataaaac tcaatgatat
     1561 taaaaaatct aataaaaaca ttatcaaatc cttgatttta ataaaagtga taattgtata
     1621 gaaaaaagct taaaagcgga ttttatttaa atttagcaat ttcatcttgt atggtttgtt
     1681 ctatatggag taattcttca tgagtttttt tgctattatc taaaagttca tcaaatttaa
     1741 agccaagcat aacaatacga tataaattgg gtttatattt tctccaatta tataaagtgc
     1801 taacatcaat gtctagttca tatgccatat cacgcttgct ctttt
//
LOCUS       DAPIWQ010000196         1815 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.198, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000196 DAPIWQ010000000
VERSION     DAPIWQ010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1815
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.198"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            169..480
                     /locus_tag="RJ267_001747"
     CDS             169..480
                     /locus_tag="RJ267_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389572.1"
                     /translation="MDLKNINFRNYNQYNRNFFFENGIKLRFRNTHKVDIVLSLLQNL
                     RNRSYHWENILKTTEKNGKHYPRLTTKIKNTHIGVDPQKIDFFLSDLIKTFNEKILEY
                     C"
     gene            599..>1815
                     /locus_tag="RJ267_001748"
     CDS             599..>1815
                     /locus_tag="RJ267_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HDV7389573.1"
                     /translation="MPQKRIYLYVPFKDKEKAKSLGAMWDDKEKKWFAPKTLDKNIFS
                     QWLYPHQNKEFSFDENEVLTAFKSALENQGLIIEGLPIMDGKIHRVKTTNDKGRELSG
                     AYNGFLDDYPAGFMQNFKTGIKENWKMPIEKNQSNNIKNSQKLHEQIKKDQELREKEI
                     LTLQEKTALKLENEYNNARWANSNHAYLKKKGFDENFYLKQDNKGSLLIPLKDENGKL
                     WSVQRIFPNGDKIIGVIKTQEEKDQGVEYLAKKQGCFHIIGAKSLEHCKEFIITEGFA
                     TAATIYKALNKPVIMGVDAGNLSKIVETLKNKFQNTPITLIADNDKKRELKGLSNVGV
                     ETAKEIQQKFSDIKVIIPKISNQEAEQGISDFNDIFLNKGIDEVKKQLNFIDFHNKLK
                     SFKSMEKTQPEKE"
BASE COUNT          799 a          228 c          273 g          515 t
ORIGIN      
        1 gataatgatt ggataaaaaa ctctaatgat gaaaagatta aaaaatccaa agaagaaatt
       61 gagcataggg aaaaaaatag aattttatct catcatcaat atctttctcg tataagttta
      121 ggaactatca ttcatctcat caaagaaaat aaattacaaa actctataat ggatttaaaa
      181 aatatcaatt ttagaaacta caatcaatac aatagaaatt tcttttttga aaatggcata
      241 aaattacgct ttagaaatac gcataaagtt gatattgttc ttagcttatt acaaaatcta
      301 agaaatagaa gttatcattg ggaaaatatt ttaaaaacaa cagaaaaaaa tggcaaacat
      361 tacccaagat taacaacaaa gattaaaaac acacatatag gagtagatcc gcaaaaaata
      421 gattttttct taagtgattt aattaaaact tttaacgaaa aaattttgga atattgttaa
      481 gattaaaaaa tgggacacaa ggagtccctc gaatttaaaa ggtgggctac taggaagccc
      541 tttgaatttc attgtaatta tactgacaaa acattaaaca aagttaaaag gatatacaat
      601 gcctcaaaaa agaatttatc tttatgttcc atttaaagac aaagaaaaag caaaatcatt
      661 aggggcaatg tgggatgata aagaaaaaaa atggtttgct ccaaaaacct tagataaaaa
      721 tattttctca caatggcttt atccacacca aaataaagaa ttttcatttg atgaaaatga
      781 agtcttaaca gcttttaaat ctgctttaga aaatcaaggt ttaattattg aaggcttacc
      841 tatcatggat ggtaaaattc atagagtaaa aactactaat gataaaggta gagaattaag
      901 cggtgcctat aacggttttt tagacgatta tcctgcaggg tttatgcaaa attttaaaac
      961 aggcattaaa gaaaattgga aaatgcccat agaaaaaaat caaagcaata atataaaaaa
     1021 ttctcaaaaa ttacatgagc aaataaaaaa agatcaagag cttagagaaa aagagatttt
     1081 aactttgcaa gaaaaaaccg ctttaaaact tgaaaatgag tataataatg caagatgggc
     1141 taattccaat cacgcttatt taaagaaaaa aggctttgat gaaaactttt atcttaaaca
     1201 agacaacaaa ggttctttac ttattccttt aaaagatgag aatggaaaat tatggtctgt
     1261 gcaaagaata tttccaaatg gagataagat cataggagtc attaaaactc aagaagaaaa
     1321 agatcaaggc gtagaatatc ttgcaaaaaa acaaggttgc tttcatataa taggtgcaaa
     1381 aagcttggaa cattgcaaag aatttattat aacagaaggc tttgctactg ctgcaactat
     1441 atacaaggca cttaataagc ctgtgataat gggtgttgat gctggaaatt tatcgaaaat
     1501 tgttgaaacc ctaaaaaaca aatttcaaaa cactcctatt accttaatag ccgataatga
     1561 taaaaaaaga gaattgaaag gtctttctaa tgtcggagtg gaaactgcaa aagaaattca
     1621 acaaaaattt tcagatatta aagttattat tccaaaaatc agcaatcaag aagcagaaca
     1681 aggaataagt gatttcaatg atattttttt aaataaaggg attgatgaag tcaaaaaaca
     1741 attaaatttc attgattttc ataataagct taaatctttt aaatctatgg aaaaaacaca
     1801 acctgaaaaa gagat
//
LOCUS       DAPIWQ010000197         1793 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.199, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000197 DAPIWQ010000000
VERSION     DAPIWQ010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1793
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.199"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            53..1369
                     /locus_tag="RJ267_001749"
     CDS             53..1369
                     /locus_tag="RJ267_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HDV7389574.1"
                     /translation="MAKKQLSLTRLSFPIFWDLLSKYLTVIINTAMVSHYSNFLVGAM
                     GAGNQILDLFITIFSFLSVGCSVVIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVL
                     ILWHGEYLLYLLKIPQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMLI
                     GFLMDIVVICGNYYVLHYTKSELFGVGLSNIFARIVAIVALLVILFYKLKIHLKIKEM
                     IKLEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIM
                     LIGQATSIANEIIVGKLVGARYENIAYKHAWRALYFSVIASALVALLNYLCQDFTMQI
                     LGLKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLP
                     VGYVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
     gene            1345..>1793
                     /locus_tag="RJ267_001750"
     CDS             1345..>1793
                     /locus_tag="RJ267_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDV7389575.1"
                     /translation="MARQSSSLKSFIYKDECYFYSKKRIKTLRLRINERGEFVLSIPY
                     FCTFKSVYEFLDKSSSWMNEAKKRFEKKVLKDDELIFLAKKYKIIFDENVKKTYFDKD
                     KIICQNKAKLDLFLRQNAKKIFTFYLKKWSQKTGLFYTHLSIKNMKTR"
BASE COUNT          582 a          202 c          334 g          675 t
ORIGIN      
        1 agtagaattg ttttttaaaa gaaatattta aaaaaagaga taagataata tcatggcaaa
       61 aaaacaactc tctttaacaa gacttagttt tcctatattt tgggatttgc tttctaagta
      121 tttaaccgtg attatcaata ccgctatggt gtcgcattat tctaattttc ttgtcggtgc
      181 tatgggggct ggaaatcaaa ttttagatct ttttatcact attttttcat ttttaagtgt
      241 gggttgtagt gtggtgatcg cacaagcaat tggtgcaaaa gatcatgttt tagcaagaaa
      301 agtgattcat caaagtttgt tcttaaatgc acttttaggc tttgtatgcg gtgtgcttat
      361 tttatggcac ggggagtatt tgctttatct tttaaaaatc ccacaagaat tgctcaaaga
      421 tagcgaaatt tacttacata tgcttgcaat ttgtttgttt tttgatgcca taggaattgt
      481 tttagctgct attgtaaggg tttataatat ggcttattgg gtcatgctta taggtttttt
      541 gatggatata gtggtgattt gtggaaatta ttatgttttg cattatacaa aatcagaact
      601 ttttggagta gggcttagta atatttttgc ccgtattgtt gctatagtgg ctttacttgt
      661 gatacttttt tataaactta aaattcatct taaaatcaaa gaaatgataa aacttgaaaa
      721 agaggtatta aaaaaggttt taaatatagg cggattttca gcaggggaaa atcttttgtg
      781 gatagtccaa tacactatag cctttgcttt tgtagcaagc ttaggtgaag caagcttgag
      841 tgtacaaacg atttattttc aaatttcaat gcttatcatg cttataggac aagctacgag
      901 catagctaat gaaattatag taggtaaatt agtcggtgct agatatgaaa atatcgctta
      961 taaacatgct tggcgtgctt tatattttag cgtaatagcg agtgctttag tagcgctttt
     1021 gaactatctt tgtcaagatt ttactatgca aattttaggg cttaaagaag agttaaaaaa
     1081 tttaatgata cctttatttg ctctttcaat ctttcttgaa atttcacgca cttttaatat
     1141 agtcatggtt aattccttgc gcgcaagtgg cgatgctaag tttccatttt ttagtggact
     1201 tgtttttatg atgggggtat ctttacctgt gggttatgtg ctttgttttc attttaatct
     1261 tggaatttta ggggtttgga taggattttg tgcggatgag tttttgcgtg gaatggtaaa
     1321 ttcatacaga tggaaaagta aaaaatggca aggcaaagct ctagtttaaa atcttttatt
     1381 tataaagatg agtgctattt ttattctaaa aaacgcataa aaactttaag attaaggatc
     1441 aatgaaaggg gtgaatttgt tcttagcatt ccttattttt gcacctttaa aagtgtttat
     1501 gagtttttag ataaatcaag ttcttggatg aatgaggcaa aaaaaagatt tgaaaaaaaa
     1561 gttttaaaag atgatgagtt aatcttttta gctaaaaaat ataaaattat ttttgatgaa
     1621 aatgtcaaaa aaacttattt tgataaagat aaaataattt gtcaaaataa agcaaaatta
     1681 gatttatttt taagacaaaa tgctaaaaag atttttactt tttatcttaa aaaatggagt
     1741 caaaaaacag gtttatttta cacgcactta agcattaaaa atatgaaaac gcg
//
LOCUS       DAPIWQ010000198         1751 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.200, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000198 DAPIWQ010000000
VERSION     DAPIWQ010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.200"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..244
                     /locus_tag="RJ267_001751"
     CDS             <1..244
                     /locus_tag="RJ267_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389576.1"
                     /translation="VKIFLDNTSIDISQPFLHLFSEMWRLNNMEKNTFHQMGVYGQLL
                     KKHEIEKLYNQINTCLKTSMLDNIASFLTKFFIKKL"
     gene            complement(239..>1751)
                     /locus_tag="RJ267_001752"
     CDS             complement(239..>1751)
                     /locus_tag="RJ267_001752"
                     /inference="COORDINATES: protein motif:HMM:NF018059.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389577.1"
                     /translation="IYDEKHKGFFDFDPNSKDTKSPLNPWAFIRVKNEATTLRVSLES
                     MLPAIQRGVIGYNDYTDGSEEIILEFCKQYPSFIPVKYPHEVQIENPQSEENKLHSYY
                     NYVASFIPQDEWLIKIDVDHYYDAKKLYKSFYMASKNTAVRFPRINFLILDKIVIQNI
                     GECGFIDGGDQLLIQKCNSVFIERMVSKQSQWIDPEKTVKELYSEQQIIPKHIKILQA
                     ELLQWHFPALKYHRNDYQKHLDALTLEDFKKIHYRHRKIKKINYTMLDEKVIREILDK
                     FKLSGKKMTLAIIPARAGSKGIKNKNLALLHDRPLLYYTINAAKNSKYVDKIVLSSDG
                     DDILEYGQTQGVDVLKRPKELALDDTTSDKVVLHTLSFYKDYENIVLLQPTSPLRTNV
                     HIDEAFLKFKNENSNALISVVECDNKILKAFIDDNGNLKGICDNKYPFMPRQKLPKTY
                     MSNGAIYIVKSNLFLNNPTFLQEKTSCYIMDEKASLDIDTTEDLKRVNNISFL"
BASE COUNT          586 a          264 c          198 g          703 t
ORIGIN      
        1 tgtaaaaatt tttttagata atacttcaat agatatcagt caacctttct tacatttatt
       61 ttcagaaatg tggagattaa ataatatgga gaaaaatact tttcatcaaa tgggagttta
      121 tggacaactt ttaaaaaaac atgagataga aaaattatat aatcagataa atacttgttt
      181 aaaaacatca atgctagata atatagcatc ctttttaacc aagtttttta taaaaaaatt
      241 ataagaagct tatattatta actcttttta aatcctctgt tgtatctata tccaaactag
      301 ctttttcgtc cattatatag caacttgttt tttcttgtag aaaagttggg ttatttaaaa
      361 ataaatttga ctttactata taaattgcac cattactcat ataagttttt ggtaattttt
      421 gtctaggcat aaatggatat ttgttatcac aaattccttt taagttacca ttatcatcta
      481 taaaagcttt taaaatttta ttatcacatt ctacaacact tattaatgca tttgagtttt
      541 catttttaaa ttttaaaaaa gcttcatcta tatgtacatt tgtccttaaa ggagaagtgg
      601 gttgtaataa aacaatattt tcataatctt tataaaaact caaggtatgc aatacaacct
      661 tatcactagt tgtatcatct agcgctaatt ctttaggtct ttttaacaca tctacacctt
      721 gagtttgtcc atattctaat atatcatcgc catcactact taaaacaatt ttatctacat
      781 actttgaatt ttttgctgca ttgatagtat aatacaacaa aggcctatca tgcaaaagag
      841 ctaaattttt attttttata ccttttgaac cagctcgagc aggtattata gctaaagtca
      901 tttttttacc actcaattta aatttatcta atatttcacg aattactttt tcatcaagca
      961 ttgtataatt tattttcttt atttttctat gtctataatg gattttttta aaatcttcta
     1021 aagttaaagc atccaaatgt ttttgataat catttctatg atattttaaa gcaggaaaat
     1081 gccattgaag taattctgct tgtaagattt ttatatgttt gggtataatt tgctgttcag
     1141 aatacaattc tttcacagtt ttttcaggat caatccactg actttgcttt gaaaccattc
     1201 tttctataaa tacactattg cacttttgaa ttaacaattg atcccctcca tcgataaaac
     1261 cacattctcc tatattttga attacaattt tatctagtat taaaaaatta attcttggaa
     1321 atctaacagc agtatttttt gatgccatat aaaaactctt atataatttt tttgcatcat
     1381 agtaatgatc cacatctatt tttataagcc actcatcttg cggtataaaa ctagctacat
     1441 agttataata actatgaagt ttattttctt cgctttgcgg attttcaatt tgcacctcat
     1501 ggggatattt tactggtata aacgaagggt attgtttgca aaattccaaa ataatttctt
     1561 cacttccatc agtataatca ttatatccta taacacctct ttgtatggca ggtaacatac
     1621 tttcaagtga tactcttaaa gtagtggctt cattttttac tcttataaaa gcccatggat
     1681 ttaaaggaga ttttgtatct tttgagtttg gatcaaaatc aaaaaaacct ttatgctttt
     1741 catcgtagat t
//
LOCUS       DAPIWQ010000199         1743 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.201, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000199 DAPIWQ010000000
VERSION     DAPIWQ010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1743
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.201"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            92..>1743
                     /locus_tag="RJ267_001753"
     CDS             92..>1743
                     /locus_tag="RJ267_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013463592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HDV7389578.1"
                     /translation="MDNFIKKAYDIVLKDYFDDFSPPSDNIPFCVLASKAYANNSLCF
                     NESISLIFVYKDIKAFHLKPMIKAFIEILNDAHLQIDSVILEFNGLYNASNELKTSII
                     QTRFICGSRILFKGIKIKFESIIKENKNDFAKLLLENFKEFDIPFIKQEFNILKDFGG
                     LNHLRSLESLLVLFKTSPKNYALNFIDEKKLSELRLAGDFLLSLKSAMNLLSAKDEDE
                     FLLINVHDLSELMYKKAKKHFGANELLVQKALQSMHTIGFYTHFLAKQIQDGLNHTLK
                     QEYKFKTLVEVLEYLLKLEDKHVIFDLNLVFALGRLKYGKKDIEKALILFEKIFYKRH
                     SFCVLKLLLDSGILKDLCKPFWTVRFLSDEEGNYSFDEQVFLMLSEFEKYEDELEILQ
                     KLKTDEKMILKLVILLSAIESENEISLAGIYRAYCSKFDLKNEILEWGLKIFKNNNAL
                     KDLVEKEDIYNPIVVSSLVSKLENLENLELLYTLTWLKAKALNYNAFYFRVLDKLLEN
                     AKQGFEDENLLEESARRVKKELTLKRSKIFLEQDEILQDKII"
BASE COUNT          652 a          175 c          281 g          635 t
ORIGIN      
        1 aatttttaaa aaaaatctta gttcctatac ccaaagttgt agaaaatttt ttcttaagca
       61 aggggcgttt agcttatatc attctaaaaa tatggataat ttcataaaaa aagcttatga
      121 tatagttctt aaagattatt ttgatgattt ttcacctcca agtgataata tccctttttg
      181 tgttttagca agcaaagcat atgcaaataa tagtctttgt tttaatgaaa gtatttcttt
      241 gatttttgtt tataaagata ttaaggcttt tcatttaaaa cctatgatta aggcttttat
      301 cgaaatttta aatgatgcgc atttgcaaat tgattcggtt atcttagaat ttaatggact
      361 ttataatgct agcaatgagc ttaagacttc tataatacaa actcgtttca tatgtggttc
      421 taggatttta tttaaaggga ttaagataaa atttgagagt attataaaag aaaataaaaa
      481 tgattttgcc aagcttttgc tagaaaattt taaagaattt gacattccat ttataaagca
      541 agaatttaat atcttaaaag attttggcgg attaaatcat ttaagatcct tggagagttt
      601 gcttgttctt tttaagactt ctccaaaaaa ttatgcttta aattttatag atgaaaaaaa
      661 attaagcgag ttgcgtttag ctggagattt tttactttct ttaaaatcag cgatgaattt
      721 attaagtgct aaagatgagg atgaattttt acttattaat gttcatgatt tgagtgaatt
      781 aatgtataaa aaagctaaaa aacattttgg agcaaatgag ttgttggttc aaaaggcttt
      841 gcaaagtatg catactatag gtttttatac acacttttta gcaaagcaaa ttcaagatgg
      901 attaaatcat actcttaaac aagaatataa atttaaaact cttgtggaag ttttagaata
      961 cttattaaaa cttgaagata aacatgttat tttcgatctt aacttggttt ttgccctagg
     1021 aagattgaaa tacggtaaaa aagatataga aaaagcttta atactttttg agaaaatttt
     1081 ttataaaagg catagttttt gtgttttaaa acttttgctt gatagtggaa ttttaaaaga
     1141 tttatgtaag cctttttgga cagttcgttt tttaagcgat gaagaaggaa attatagttt
     1201 tgatgagcaa gtttttctta tgttaagtga atttgaaaaa tacgaagatg agcttgagat
     1261 actccaaaaa cttaaaaccg atgaaaaaat gattttaaag cttgtgatac ttttaagcgc
     1321 tatagaaagt gaaaatgaaa tttctttagc aggcatatat agagcgtatt gctccaaatt
     1381 tgatttaaag aatgaaattt tagaatgggg tcttaagata tttaaaaaca ataatgcctt
     1441 aaaagatctt gtagaaaaag aagatatata caatcctatt gttgtaagta gcttggtttc
     1501 taagctagaa aatttagaaa atttagagct tttatacact ttaacttggc taaaggctaa
     1561 ggctttaaat tataatgctt tttattttag agttcttgat aaacttttag aaaatgcaaa
     1621 acaaggtttt gaagatgaaa atctacttga agaaagcgca agaagagtaa aaaaagaatt
     1681 aacacttaaa agaagtaaga tttttttaga gcaagatgaa attttgcaag ataaaatcat
     1741 aca
//
LOCUS       DAPIWQ010000200         1642 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.202, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000200 DAPIWQ010000000
VERSION     DAPIWQ010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1642)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1642)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1642
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.202"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            4..810
                     /locus_tag="RJ267_001754"
     CDS             4..810
                     /locus_tag="RJ267_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDV7389579.1"
                     /translation="MKKILIIISLFLITLNAKERLVVLDPASIETLFMLKAKDQIVGI
                     ATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAERLEDITKNITTLGQITKKEKEAELLKQEFNQKFKKLSDKPLNKSAIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSQISRPVISAEYILKQNPDILILGINAKNNL
                     LDTNALLKNTKAVKTGSIYFNKDTPILLRLSPKIIDRIQEFKTKLENNNF"
     gene            complement(807..>1642)
                     /locus_tag="RJ267_001755"
     CDS             complement(807..>1642)
                     /locus_tag="RJ267_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HDV7389580.1"
                     /translation="ELSDICGLKCDFCPSQKGIRGVMSEEKFQNLAYEISNKAELFTF
                     HLLGDPLLLPNLENYLKIAKDEAMKLEITTSGFYLNSKNQALLLGYENIHQINISLMS
                     FLSQSKISLEQYFKPILELCKKHLEQKSLSFINLRLWNLDANFKAPKSNLKIYEFLAK
                     EFEAKIDANLSKNRLQRHILLHQNKLFKWPNLKDEPLYKKGKCHALKEQIGILSDGSL
                     VPCCLDTKADINLGNVFENNFDKLFKSPRIKMMKKAFEEDKRIEKLCQTCEFFKARLG
                     D"
BASE COUNT          622 a          261 c          208 g          551 t
ORIGIN      
        1 aaaatgaaaa aaattttaat tattataagt ttgtttttaa tcacactaaa tgcaaaagaa
       61 cgccttgtag tgcttgatcc tgcaagcata gaaacccttt ttatgcttaa ggctaaggat
      121 caaatcgtag gcattgccac tttgcaacac tcaaatattt atcctaaaga tcaaacctca
      181 aaacttacaa gcgtaggtac tttttcaaat ccttcgcttg aaaaaatagt agcattaaaa
      241 ccaagtttgg tgattttaag ctcttattct ttaaatttag aagaaggact taaaaatttt
      301 ggtatcaaaa gtatcaattt aaaagccgag cgtttagaag atataacaaa aaatatcaca
      361 accttaggcc aaatcaccaa aaaagaaaaa gaagcagagc ttttaaaaca agaatttaac
      421 caaaaattta aaaaattaag cgataaaccc ctaaataaaa gtgcgattta tctttattct
      481 agcaaccctt taatggcctt taatgataat tctttaatag ctgatatttt aagacttata
      541 gggattaaaa atttaagccc gcaaagtcaa atttcaagac ctgttatatc agcagaatac
      601 atactgaaac aaaatccaga catactcatt cttggaatta atgctaaaaa caatctttta
      661 gatacaaatg ctttattgaa aaataccaaa gcagttaaaa caggaagtat ttattttaac
      721 aaagatacac ctatattatt acgtcttagt cctaagataa tagatagaat tcaagaattt
      781 aaaacaaagc tagaaaataa caatttttaa tcacccaatc ttgctttaaa aaattcgcaa
      841 gtttgacaaa gtttttctat gcgtttatct tcttcaaaag cttttttcat catctttata
      901 cgcggtgatt taaaaagctt atcaaagtta ttttcaaaaa catttcccaa gttaatatct
      961 gctttagtat ccaaacagca aggcaccaaa cttccatcac ttaaaatccc aatttgctct
     1021 tttaaagcat gacattttcc ttttttataa aggggttcat cttttaaatt tggccattta
     1081 aaaagtttat tttgatgaag caaaatatgt ctttgcaagc gatttttact taagtttgca
     1141 tcgatcttag cttcaaattc tttggctaaa aactcataaa tttttaaatt tgacttaggt
     1201 gctttaaaat tagcatctaa attccaaagt cttagattga taaaagaaag gcttttttgc
     1261 tctaaatgct ttttgcaaag ttctaaaata ggcttaaaat actgttctaa agaaattttg
     1321 ctttgactta aaaaagacat taaagaaata ttgatttgat ggatattctc ataccctaac
     1381 aataaagctt gatttttaga atttagataa aagccacttg tagtgatttc aagtttcata
     1441 gcttcatctt ttgcgatttt tagataattt tccaaattag gtaaaagcaa aggatcgccc
     1501 aaaagatgaa aggtaaaaag ctcagcttta ttagaaattt cataagctaa gttttgaaat
     1561 ttttcttcac tcattacccc gcgaattcct ttttgagaag gacaaaaatc acattttaaa
     1621 ccacaaatat cgcttaattc ta
//
LOCUS       DAPIWQ010000201         1581 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.203, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000201 DAPIWQ010000000
VERSION     DAPIWQ010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1581)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1581)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1581
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.203"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..523)
                     /locus_tag="RJ267_001756"
     CDS             complement(<1..523)
                     /locus_tag="RJ267_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HDV7389581.1"
                     /translation="MIFFYYFLTWTAFLFCAVFILLLSFLKSKYKISLKSRFFLYKNL
                     HQEKADVHFHACSYGEVRSIKALVLKFDSRITTITQTGFECAKEFCKKVNYLAFENFL
                     PFWLKPCKVLVIFEAEYWLMLVFMARIYKAKIILLNARISDKSYHSYQRFSFFYKKIF
                     SYIDEVFAQSDLDK"
     gene            complement(520..1236)
                     /locus_tag="RJ267_001757"
     CDS             complement(520..1236)
                     /locus_tag="RJ267_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HDV7389582.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSYEPKIDSINKTLKDAELKIEKINA
                     DLEKIDEEIKDIENQKIQNNAHISEFSAKIKDLSKKSGVVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILENKETYKKELEEEKIKQEQNINEIRVSIKSEMEVLEKDRMSV
                     YDKKTKLVSEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVVKGE
                     EIVTCPHCGRILYKEQEEQN"
     gene            complement(1246..>1581)
                     /locus_tag="RJ267_001758"
     CDS             complement(1246..>1581)
                     /locus_tag="RJ267_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HDV7389583.1"
                     /translation="SMSFEALCDWVKKKLNLQILRVSDCGKKDIKRIAICTGSGGDLI
                     SKVDADCFLSGDFKYHQALEALSNQISLIDLGHFESERYFSQCLAKDLKNLPLQVIIT
                     VSKNPFQYF"
BASE COUNT          542 a          273 c          163 g          603 t
ORIGIN      
        1 ctttatctaa atcactttga gcaaaaactt catcaatata agaaaaaatt tttttataaa
       61 aaaaagaaaa tctttgataa gaatgataag acttatcaga tattctcgca ttaagcaaaa
      121 taatcttagc cttataaata cgtgccataa aaacaagcat aagccaatat tctgcttcaa
      181 aaattaccaa aaccttacaa ggcttaagcc aaaaaggcaa aaaattttca aaagcaagat
      241 aatttacctt tttacaaaat tcttttgcac attcaaaacc tgtttgagta atagtagtta
      301 ttcttgaatc aaatttcaaa accaaagctt taatacttct tacctccccg taagaacaag
      361 catgaaaatg tacatcagct ttttcttgat gtaaattttt ataaagaaaa aatcgagatt
      421 ttaaactaat tttgtatttg gattttaaaa aagaaagtaa aagaataaag acggcacaaa
      481 ataaaaatgc cgtccaagtt aaaaaataat aaaaaaagat caattttgtt cttcttgctc
      541 tttataaaga attcttccgc aatgaggaca agttacaatc tcttcacctt ttacaacgga
      601 cagataagtc ttatcgtaaa ttttcataaa acatccatag catgcttgtt ttttaacagg
      661 aactacagca gtattcttcg cccatttgcg aattttctca taaaaactta aaactttttg
      721 attcatctca ctcacaagtt tagttttttt atcataaaca ctcattctat ctttttcaag
      781 aacttccatt tcagatttaa tgcttactct aatctcgtta atattttgct cttgtttgat
      841 tttttcttct tcaagttctt ttttataagt ttctttattc tctaaaattt tatctagtct
      901 tacaatctca tcatttgcag cgtctaattg ctcttttgca atatcttctt caatttttaa
      961 agcattagct tctttttctg tttttaccac accacttttt ttagaaagat ctttaatttt
     1021 tgctgaaaac tcggaaatat gagcattatt ttgtattttt tgattttcta tatctttgat
     1081 ttcttcatcg attttttcta aatctgcgtt gattttttct atttttaact cagcatcttt
     1141 taaagtctta ttaatactgt ctatttttgg ttcataacta tcaatttctt gatctatttt
     1201 tgataaaagc actaattgtt cgagatattt attcatttat tttccttaaa aatattgaaa
     1261 tggatttttt gaaactgtta ttataacttg tagcggcaaa tttttcaagt cttttgctaa
     1321 acattgagaa aaatatctct cactttcaaa atgacccaaa tcaataagac tgatttgatt
     1381 actaagcgcc tctaaagctt gatgatattt aaaatctcca cttaaaaaac aatccgcatc
     1441 tactttagaa attaaatccc cgccacttcc agtacatata gcaatgcgct taatgtcttt
     1501 tttgccacaa tcacttacac gtaaaatttg caaatttaac ttttttttca cccagtcaca
     1561 caaagcttca aaagacatag a
//
LOCUS       DAPIWQ010000202         1560 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.204, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000202 DAPIWQ010000000
VERSION     DAPIWQ010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1560)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1560)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.204"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            66..1490
                     /locus_tag="RJ267_001759"
     CDS             66..1490
                     /locus_tag="RJ267_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDV7389584.1"
                     /translation="MDFLTSLSEGGQFAIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MLVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNANHKLAGFDGYINLLQITIPSTLFGVLCIGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVKLPKSNWVAMWIFLGAIALVALLGVFDFLRPNWGQV
                     VKNGIPQVDALGNPKMDVLSMVSVIQMFMLLAGSLIIIFTKTDAKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKAALGDIVKEHPWTYAVMLLLISKFVNSQAAAISA
                     FVPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVITSCIAGYFIAMAAGYL"
BASE COUNT          443 a          220 c          302 g          595 t
ORIGIN      
        1 tctttaattt aaaaatgtga tacaataata actgttttta aatattaatt ttcaaaggag
       61 ttaaaatgga ctttttaaca agccttagtg agggagggca atttgcaatc caaatcatta
      121 tcgttttaat ttgtcttttt tacggtgcaa aaaaaggcgg catagcgctt ggtttacttg
      181 gtggtatagg tattttaatg cttgtatttg cttttcatat aaagcctgga aaaccagcca
      241 tagatgttat gcttacaatt ttagcggtag tggttgcgag tgcaactttg caagcaagcg
      301 gtggtttgga tgttatgctt caaatagcag aaagaatttt aagacgcaat cctaagtttt
      361 taacaatatt agcgcctttt gtaacctgct ttttgactat actttgtgga acaggacatg
      421 tggtttatac tattatgcct attatttatg atatagcgat taaaaacggt attcgtcctg
      481 agcgtccaat ggcggcagct tctatatcat cacaaatggg tattattgca tctcctgtat
      541 ctgtggctgt tgtgagtttg actgctttgc ttttaaatgc taatcataaa ttagcaggtt
      601 ttgatggtta tattaatctt cttcaaatta ccatacctag tacattattt ggtgtattgt
      661 gtataggaat tttttcttgg tttagaggaa aagatttgga taaagatgaa gtatttcaag
      721 aaaaacttaa agatcctgaa tttaaaaaat atgtttatgg ggattctaaa acacttttag
      781 gcgttaaact tccaaaaagc aattgggttg caatgtggat tttcttagga gctattgctt
      841 tagtagcttt attaggtgta tttgatttct tgcgtccaaa ctgggggcaa gttgtaaaaa
      901 atggcattcc tcaagtagat gctttaggca atcctaaaat ggatgtttta tccatggttt
      961 cagttattca gatgtttatg cttttagcag gttctttgat tatcatcttt actaaaacag
     1021 atgcaaagaa aatcggctct aatgaaattt ttaaatcagg tatgatagca cttgttgcgg
     1081 tttttggaat ttcttggatg gctgatacta tgtttgcagt tcacactcct atgatgaaag
     1141 cagcgcttgg agatatagta aaagagcatc cttggactta tgctgtaatg cttcttttaa
     1201 tttcaaaatt tgtaaactct caagcagcgg ctatttcagc ttttgttcct ttggctttag
     1261 gaattggtgt tgaacctggt gtaattgttg cttttgcggc tgcttgttat gggtattata
     1321 ttttaccaac ttatccaagc gatttggcta ctatacaatt tgatagatca ggtactactc
     1381 acatcggtaa atttgttatc aatcatagtt ttattttacc aggtcttata ggtgtaatca
     1441 cttcttgtat agcaggatat tttattgcta tggcagcagg ttatctttaa caatttttag
     1501 caggattttt cctgctaaat tcttcatttg tctttttatt taatatagat aaaaattata
//
LOCUS       DAPIWQ010000203         1510 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.205, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000203 DAPIWQ010000000
VERSION     DAPIWQ010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1510)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.205"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..296)
                     /locus_tag="RJ267_001760"
     CDS             complement(<1..296)
                     /locus_tag="RJ267_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7389585.1"
                     /translation="MGFRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDEQLKILDTIKTKATQA"
     gene            complement(442..>1510)
                     /locus_tag="RJ267_001761"
     CDS             complement(442..>1510)
                     /locus_tag="RJ267_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7389586.1"
                     /translation="ADEINKNADKTGVRATFTVETRGIAAVREGATSDTFAINGVKIG
                     KVDYKDGDSNGALVSAINSVKDTTGVEASIDANGQLLLTSREGRGIKIDGSIGRGAFI
                     NPNMMENYGRLSLVKNDGKDILISGSNLSSAGFGANNFISQASVSLRESKGQIDANIA
                     DAMGFGSANKGVVLSGYSSVSAYMSSTGSGFSSGSGYSVGSGKNYSTGFANAIAISAA
                     SQLSAVYNVSAGSGFSSGSNLSQFAAMKTTAFGVKDETAGVTTLKGAMAVMDIAETAI
                     TNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQ
                     SGSYAMAQANSVQQNVLRLLQ"
BASE COUNT          463 a          313 c          243 g          491 t
ORIGIN      
        1 gcttgagttg ccttagtttt aatagtatct aagattttaa gttgctcatc catagcctta
       61 tcagcagttt gtaagatacc tatagcatcg ttaccattgt ttatagcttg acctaaagtg
      121 gctgcttgtg aacgcaaaga atctgctatc gccatccctg aagcatcatc tgctgcggag
      181 ttgattctaa gacctgaact aagtctgctt aaagacttat ccagttctct agcattaaca
      241 actgaatttg catgtgcatt taatgcaccg atgttggtgt ttatcctaaa acccatttta
      301 aatcctttca aaatattgca tcgaaaagat taaagcaaaa agtgttccaa gttttagttt
      361 aattaaaaat tttagagttt aaaataaaaa agcctagttc taaactaggc ttggatttgt
      421 atatattgca gcttttgtaa actactgtag taatcttaaa acattttgtt gaacagaatt
      481 agcctgtgcc atggcataag agccactttg agctaagata tttgctttag agtagtttgc
      541 actctcagct gcaaagtcta catcacggat ttgcgactca gctgctttaa cgtttacttg
      601 agttacggtg atgttgttta tcgttgatgt aacttgattt tgcaccgaac caatgtcggc
      661 tctgatttga tcaagatttg ttatagctgt ttcagctata tccatcacag ccatagcacc
      721 tttaagcgtg gtaacacctg ctgtttcatc ttttactcca aaagcagttg ttttcatagc
      781 tgcaaactga gaaagatttg atcctgatga aaaacctgag cccgcagaaa cattatatac
      841 cgcagaaagt tgcgaagcag ctgaaatagc tatagcgttt gcaaaacctg tggaataatt
      901 tttaccgcta cctacagaat aacctgaacc tgaagaaaat ccacttcctg tgctactcat
      961 ataagcacta acagaagaat aaccacttaa cacaactcct ttgtttgcag aaccaaatcc
     1021 catagcatca gcgatattag catcaatttg tccttttgat tctcttaaag aaacagaagc
     1081 ctgagagata aaattattcg ctccaaaacc tgcagaagaa agattgctac cgctgattaa
     1141 aatatcttta ccatcatttt taactaaaga taaacgacca taattttcca tcatatttgg
     1201 attgataaaa gcacctctac ctatactacc atcgatttta atccctcttc cctctcttga
     1261 agtaagtaaa agttgtccat tagcatcgat tgaagcttca actccagtgg tatctttaac
     1321 cgagttaatt gcagaaacca aagcaccgtt gctatcacca tctttgtaat ctactttacc
     1381 gatttttacc ccattgatag caaaagtatc tgaagtagct ccttctctaa ctgcagctat
     1441 acctctagtt tctactgtaa aggtagctct aacacctgtt ttatcagcat ttttattgat
     1501 ctcatctgct
//
LOCUS       DAPIWQ010000204         1500 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.206, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000204 DAPIWQ010000000
VERSION     DAPIWQ010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.206"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..1463
                     /locus_tag="RJ267_001762"
     CDS             <1..1463
                     /locus_tag="RJ267_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7389587.1"
                     /translation="CSGKIYLVDIEEERVDIQLLILFDMKDMFEYLSLYEMFVNNVYY
                     KKFYEDVWHKADELCEKNIKVVIRNLNSSLCIGFECYSHLLQNIPSMLESIPFQRILS
                     ERKNKFENAIVVSAGPSLAKQLPLLKAYQDKAVIFCADGALSMLEKEGIIPDYVTNLD
                     FTDLAMKFFQNKENKTSLNMLSCATHPSLVHFLDNKSVVLRDDPLYQRFNLNDFGYID
                     TGTHVSHFSYTLALALGFKNIIMIGQDLAFDEEGNSHSKGFDFGEKFSGEENIDKLKV
                     TAYAGKGEVLTHITWNDYRIKLEYLFACNEQKAKFYNATEGGARINFTEELSFKECCE
                     KLLTKEKPQFELPKSLTKNRSDKLLVKFKEKIQKDQDNAKRFLDDALALKQILENILS
                     KDFILPLEFLEKVYQNIENFNHSLDEDEFIQDGILKAVMYERGLKISLVYKENIVDNA
                     SFISAYIKAYHEWLLYFMEKLEQRINIIIDSFKELP"
BASE COUNT          558 a          178 c          251 g          513 t
ORIGIN      
        1 tttgtagtgg aaaaatttat cttgtggata tcgaagaaga aagagtagat attcaactgc
       61 ttatactttt tgatatgaaa gatatgtttg agtacttaag tttgtatgaa atgtttgtga
      121 ataatgttta ttataaaaag ttttatgagg atgtctggca taaagcagat gagctttgcg
      181 agaaaaatat aaaagttgtg ataagaaatt taaattctag tttatgtatc ggttttgagt
      241 gttattctca tcttttacaa aacatccctt ctatgcttga aagcattcct tttcaaagaa
      301 tcttaagtga aagaaaaaac aaatttgaaa atgctatagt agtttctgca ggacctagtt
      361 tagctaaaca acttccttta cttaaagctt atcaagataa agcagtgatc ttttgtgctg
      421 atggggcttt aagcatgctt gaaaaagaag gcataatacc tgattatgtt acgaatttag
      481 attttactga tctagcaatg aaattttttc aaaataaaga aaataaaact tctttaaata
      541 tgctttcatg tgctactcat cctagtttgg ttcatttttt agataataaa agtgtagttt
      601 taagagatga tcctttatac caacgcttca atcttaatga ctttggctat atcgatacag
      661 gcactcatgt aagtcatttt tcttatacct tagctttggc tttaggattt aaaaatatca
      721 tcatgatagg acaagattta gcctttgatg aagaaggaaa ttcacactca aaaggttttg
      781 attttggaga gaaatttagt ggtgaagaaa atatagataa acttaaagtc accgcctatg
      841 caggcaaagg tgaagtttta acgcatataa cctggaatga ttatcgtata aaacttgaat
      901 atctttttgc ttgcaatgaa caaaaagcaa agttttacaa tgctactgaa ggtggagcaa
      961 ggattaattt cactgaagaa ctttccttta aagaatgttg tgaaaaactc cttacaaaag
     1021 aaaaacctca atttgaactt ccaaaaagtt taactaaaaa tagaagtgat aaactcctag
     1081 ttaaattcaa agaaaaaata caaaaagatc aagataatgc taaaagattt ttagacgatg
     1141 ctttagcttt aaaacaaatt ttagaaaata tactcagtaa agattttatt ttacctttgg
     1201 aatttttaga aaaagtttat caaaatatag aaaatttcaa tcactcttta gatgaagatg
     1261 agtttataca ggatggtatt ttaaaagcag tgatgtatga gcgaggactt aagataagtt
     1321 tagtttataa agaaaatatt gtagataatg ctagttttat cagtgcttat attaaagctt
     1381 accatgaatg gttgctttat tttatggaaa aattagagca aagaataaat attatcatcg
     1441 attcttttaa ggaacttcca tgaatttgct agaaaaaaac atacaagctt tattaagtgg
//
LOCUS       DAPIWQ010000205         1496 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.207, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000205 DAPIWQ010000000
VERSION     DAPIWQ010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1496
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.207"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            54..983
                     /locus_tag="RJ267_001763"
     CDS             54..983
                     /locus_tag="RJ267_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 family protein"
                     /protein_id="HDV7389588.1"
                     /translation="MKKYLFSCVLASILTQSATAVEFQEGFSGNLSIGVGARDIKSNI
                     STLANSDYLSSYNADNSDSSFIPFIGVELYYGNLIDNDRIFIKNYNGRDISGIALGYE
                     RAYLERFSTSFSVISSLREKAYANPYHEGNREETDVDRYGFKISQLYESDFGKFTTSY
                     LFSKNKYDKDTITYSSLKREGYYHEFELNYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     SIGTNLAFANDYIFTPNLNLSKYEAVGTDPIFHKKQDGNIVKLNLKVVKNQFLGYNGL
                     YGFANYGIEKRNSDIGFYDETYQIVLTGIGYKF"
     gene            complement(1031..>1496)
                     /locus_tag="RJ267_001764"
     CDS             complement(1031..>1496)
                     /locus_tag="RJ267_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HDV7389589.1"
                     /translation="GDAMQPALSYNYAKKDFSRIKAIIKVAFFAGGFLSLFSIVLILI
                     FGENLITLFTKENNQEFKTFAYTALTLFAFNYFFAWFNVLSGSFLTAFNKASFSLVLS
                     LAQNLFIPLFFLLFLSYFIGLNGVWLSPFFAEFCVLILAWIFLKRIFKDLSL"
BASE COUNT          596 a          211 c          218 g          471 t
ORIGIN      
        1 tacaattata aatgtaattt aattacaaac aacaaacatt tcaaggagaa catttgaaaa
       61 aatatttatt ttcctgtgtt ttagcctcca ttttaaccca atcagctacg gctgtagaat
      121 ttcaagaagg ttttagtgga aatttaagca taggtgtggg tgcaagggat attaaaagta
      181 atatttcaac cttggcaaac agtgattatc taagcagtta caatgctgat aattcagact
      241 cctctttcat tccttttatc ggtgtagaac tttactatgg caaccttata gataatgata
      301 gaatttttat taaaaactac aatggaagag atatcagcgg tatagcttta ggctacgaaa
      361 gagcttattt agagcgtttt agcacttctt tttctgtgat ttcctcttta agagaaaaag
      421 cttatgcaaa tccttatcat gaaggaaata gagaagaaac tgatgttgat agatatggtt
      481 ttaaaatctc tcaactttat gaaagtgatt ttgggaaatt taccacttca tatttattta
      541 gcaaaaacaa atatgataaa gacactatta catatagctc tttaaaaagg gaggggtatt
      601 atcacgaatt tgaattaaac tataattata gcttattaaa cctaggacta aattatgatt
      661 acaatgatgc agacggaaaa gctcaaagct attcaagata tggttttagc atagggacaa
      721 atttggcttt tgctaatgat tacatcttca ctccaaattt aaatcttagt aaatatgaag
      781 cagtaggaac tgatcctatc ttccacaaaa aacaagatgg taatatagtt aagcttaatc
      841 taaaagttgt taaaaatcaa tttttgggtt ataacggact ttatggtttt gcaaattatg
      901 gtatagaaaa aagaaatagt gatataggat tttatgatga aacctatcaa attgtcctaa
      961 ctggtatagg atataaattc taaaaattat aaaaaagctc ctttgataaa atttaaaaaa
     1021 gatctatctc ctataaagat agatctttaa aaattctttt aagaaaaatc caagctaaaa
     1081 tcaaaacaca aaattcagca aaaaatggac ttagccatac tccatttaaa cctataaaat
     1141 aagataaaaa caaaagaaaa aacaaaggta taaataaatt ttgcgccaaa cttaaaacca
     1201 aagaaaagct tgccttatta aaagctgtca aaaaagaacc acttagaaca ttaaaccatg
     1261 caaaaaaata attaaaagca aaaagcgtca aagctgtata agcaaaagtt ttaaattctt
     1321 gattgttttc ttttgtaaaa agcgtgatta aattttctcc aaatatcaat ataagcacta
     1381 tagagaataa agataaaaat ccccctgcaa aaaatgccac ttttataata gctttgattc
     1441 ttgaaaaatc ttttttagca tagttgtaac taagtgcagg ctgcattgca tcaccc
//
LOCUS       DAPIWQ010000206         1418 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.208, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000206 DAPIWQ010000000
VERSION     DAPIWQ010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1418)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1418)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1418
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.208"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(4..741)
                     /locus_tag="RJ267_001765"
     CDS             complement(4..741)
                     /locus_tag="RJ267_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7389590.1"
                     /translation="MIKAFSLLEFVFIILILGIVFNLGSLYLKKDNLLEGAIQILNDI
                     QYTQSLAMMQEGIRVDELTIAKREWFKSKWQIYFIKSAATGYDQTYTIFLDKNGDGNA
                     NLGKTEINIDREIAVDVINHNKLMNSGQSGVISKDDEKTTQRFNLTKRFGIEKVEFKG
                     SCSGFTRLVFDEMGRVYSPLKNANYAYEKTLAKNNSDCIIRLLSKKHALCIVIDTLSG
                     YVYIPDFKTLKSQFVNIKNKNYECSKI"
     gene            complement(734..>1418)
                     /locus_tag="RJ267_001766"
     CDS             complement(734..>1418)
                     /locus_tag="RJ267_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389591.1"
                     /translation="SLVLFGASISFYGFDTGGRPRGYFLDTLGIFAACFSPLVFVYFF
                     YTIYRLTFQKYKNLLWFLMSVTFVFCLLLSLRQKLFLDDFLPFCVICTPLLIKTLMQS
                     YRVRLLVFRLRYKIFIECSIIFLIFCYFLIVANQLLYYFINNPNRHFANNYHFAKELA
                     LELKKQDVLELATAPSLQKRLRFYGIKNSNKFYLKALKQADKHDMDKKIVKVKLGKYE
                     KVYQILNYD"
BASE COUNT          528 a          230 c          159 g          501 t
ORIGIN      
        1 gggctatatt ttagagcact cgtaattttt attttttata ttaacaaatt gacttttaag
       61 tgttttaaaa tctggaatat aaacataacc gctaagcgta tctataacga tacaaagagc
      121 atgctttttt gataacaaac gtataatgca atctgaatta ttctttgcta aagttttttc
      181 ataggcataa ttggcatttt ttaacggaga atacactctg cccatttcat caaatactaa
      241 tctagtaaat cctgaacaag atcctttgaa ttcaaccttt tctattccga atctttttgt
      301 aagattaaat ctttgtgtag ttttttcatc atctttacta ataactccac tttgacctga
      361 attcattaat ttgttatgat tgattacatc aacagcaatt tctctatcta tattgatttc
      421 agttttacct aaattagcat ttccatcgcc atttttatcc aagaaaatag tatatgtttg
      481 atcataacct gtggcagctg attttataaa ataaatctgc catttacttt taaaccactc
      541 tctttttgca atagtcaact catcaactct tataccttct tgcatcatgg ctaaactttg
      601 ggtatattgg atatcattaa gaatttgtat cgcaccttct agtagattgt ctttttttaa
      661 gtaaagactg cctaaattaa aaactatacc taaaatgaga attataaaca caaattccaa
      721 caaactgaaa gctttaatca tagtttaaaa tctgatatac tttttcatat tttccaagtt
      781 ttactttaac aatttttttg tccatatcat gcttatcggc ttgttttaaa gcttttaaat
      841 aaaacttatt gctatttttt attccataaa atcgcaatct tttttgcaaa cttggggctg
      901 ttgcaagctc taaaacatct tgttttttta attctagtgc caattcttta gcaaaatgat
      961 aattattggc aaaatgacga tttggattgt ttataaaata atacaataat tgattagcga
     1021 cgattaaaaa gtaacaaaat atcaaaaaaa ttatagaaca ttctataaag attttatacc
     1081 ttaatcgaaa aactagtaat ctcaccctat aactttgcat taaagttttt ataagcaaag
     1141 gagtgcaaat aacacaaaaa ggcaaaaaat catctaaaaa aagtttttgt cttaaagaaa
     1201 gcaacaaaca aaatacaaat gttacgctca ttaaaaacca taataaattt ttatattttt
     1261 gaaaagtcaa acgataaata gtataaaaaa aatacacaaa aaccaaagga gaaaaacatg
     1321 cagcaaaaat tcctaaggta tctaaaaaat aacctcttgg acgaccacct gtatcaaaac
     1381 cataaaaact gatactcgct ccaaacaaaa caagagat
//
LOCUS       DAPIWQ010000207         1403 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.209, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000207 DAPIWQ010000000
VERSION     DAPIWQ010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1403
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.209"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..259
                     /locus_tag="RJ267_001767"
     CDS             <1..259
                     /locus_tag="RJ267_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HDV7389592.1"
                     /translation="IFDASKGHFLLAKANCNFLKPAKLGDMIEIKTKILEVKNASVEI
                     LQEIYKDEILLFKMELTLAFIKNEKPARMDMQLKKLFEELF"
     gene            complement(251..1402)
                     /locus_tag="RJ267_001768"
     CDS             complement(251..1402)
                     /locus_tag="RJ267_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389593.1"
                     /translation="MLNAKEQKLVDVKPVENFYPKLSVQECNTNCLFDLLESRLYLSF
                     LSEFADQNDQFLSNVYAKLLNSITDFEKNVQKITSVKLAIIIPEKTIKSYSNTIINSS
                     IAYLLRQRAEIKVKVFLTGTEDNDKIRAALDAAQAQGYQYAIAGFTLKGANELKNYSG
                     NMKIFIPTIHKNNIQISNQNIIFGSIDYDAQIATLLSKSNANIAIFSDGSALSSNLNS
                     RILAQNNNARIYTIEGEKLDFSRLLRSQGGVNNASIFFNTPLIKTALASSQLRIYNIH
                     PYVLLSTQINYNPTFLSLTQQGDRENFIIANSINNHDDNLVYLNEIFNQSIDYNWIAY
                     ATSIGVDYFYTEFLNKKSESLFDEKIKNSQVDYKVRLMQGKQASFEELK"
BASE COUNT          468 a          185 c          219 g          531 t
ORIGIN      
        1 tatttttgat gcgtctaagg gacatttttt gcttgcaaaa gcaaattgca atttcttaaa
       61 acctgcaaaa cttggagata tgatagagat taaaacaaaa attttagaag tcaaaaatgc
      121 ttctgtggaa attttacaag aaatttataa agatgaaatt ttgcttttta aaatggaatt
      181 aactttagct tttattaaaa acgaaaaacc agctagaatg gatatgcagt taaaaaagct
      241 ctttgaagaa ttattttaat tcttcaaagc ttgcttgttt gccttgcata agacgcactt
      301 tgtaatcaac ttgagaattt ttgattttct catcaaataa actttcgctt tttttattta
      361 agaattcggt ataaaagtaa tcaactccta tactagtagc ataagcaatc cagttataat
      421 ctatactttg attaaaaatt tcattaagat agactaggtt atcatcgtgg ttattgatag
      481 aattagcaat gataaaattt tctctatctc cttgttgtgt taaacttaaa aatgttggat
      541 tatagttgat ttgagtggat aaaagcacat aaggatgaat gttataaatt cttagctgag
      601 aacttgctag agctgttttg atcaatggag tgttaaaaaa tattgaggca ttattaactc
      661 caccttgtga tcttaaaagc ctgctaaaat caagcttctc gccttctatg gtatatattc
      721 tagcattatt attttgagca agaattcttg aatttagatt gcttgataag gcagagccat
      781 cgctaaatat tgcgatatta gcatttgatt tgcttaaaag tgtggcaatt tgagcatcat
      841 agtcaatact tccaaaaata atattttgat ttgaaatttg tatgttgttt ttatggatag
      901 tcggtatgaa aattttcata tttcctgagt aatttttcaa ctcattagca ccttttaagg
      961 taaatccagc tatggcatac tgatatcctt gagcttgtgc tgcatcaagc gcggctcgaa
     1021 ttttatcatt atcttctgtg ccggttaaaa aaacttttac tttgatttca gctctttgtc
     1081 ttaaaagata ggctatgctt gaatttatta tagtatttga gtagcttttt atggtttttt
     1141 ctgggataat tatcgcaagt ttaacagaag taattttttg aacatttttt tcaaaatcag
     1201 taatggaatt taataatttt gcataaacat tagataaaaa ttgatcgttt tgatctgcaa
     1261 attcacttaa aaaactaaga tacaatcttg attctaaaag atcaaaaaga caatttgtgt
     1321 tgcattcttg aacgcttaat ttaggataaa aattttcaac tggttttaca tcgactaatt
     1381 tttgctcttt tgcattaagc aaa
//
LOCUS       DAPIWQ010000208         1399 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.210, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000208 DAPIWQ010000000
VERSION     DAPIWQ010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1399
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.210"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(15..1322)
                     /locus_tag="RJ267_001769"
     CDS             complement(15..1322)
                     /locus_tag="RJ267_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HDV7389594.1"
                     /translation="MILTLLTNPIIISVVLMTLLCLFRFNVLLSLLISALVAGVFSHL
                     ELVDTMNILISGMKENLKTALSYILLGAIAAAISKTNLTAYLIKIVSHFISHKKYLLL
                     LSIALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLP
                     VGFGLTFQDLLKDNLNANNVSASLNDVTNTMYFAAICMIAGLFLALFVFYRKPREYQE
                     VEIAKVDLENLEMTRKEWGVLAGLVLTLILQILTMNLPLSGLLGFVLMVILGGVEFSK
                     VNEVFDDGLKMMGFIAFVILVAAGYGEVLKESGSVVDLVNSVVPWMEQSKFLAVFFML
                     LIGLIITMGIGTSFGTIPIIATLFCPICLELGFSTALIIFILGVAGALGDAGSPASET
                     TMGTTVGLNADKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
BASE COUNT          569 a          248 c          185 g          397 t
ORIGIN      
        1 tagatttgca aaaattataa aaacatggcg ataatactac ctaaaatcaa taatggacca
       61 ttataaaaaa taaaagttgg tatgcaagta tctttaatgt gatcgtgttg tttatcagca
      121 tttaatccta cagtagttcc catggttgtt tcactggctg gacttcctgc atctcctaaa
      181 gctcctgcta ctcctaagat aaatataata agtgctgtac taaaaccaag ctccaaacaa
      241 ataggacaaa aaagcgtagc tatgataggt atagttccaa aagaagtacc tatacccata
      301 gtgatgataa gtcctattaa aagcatgaaa aatactgcta aaaatttact ttgttccatc
      361 caaggaacga ctgaatttac aagatctact actgatccac tttcttttaa aacttctcca
      421 tatcctgcag caacaaggat aacaaaagct ataaaaccca tcattttaag cccatcatca
      481 aaaacttcat tgacttttga aaattcaact ccacccaaaa taaccattaa aacaaaaccc
      541 aaaagccctg ataaaggtaa attcatagtc aaaatttgca aaattaaagt taaaacaagc
      601 ccagctaaaa cgccccattc cttacgcgtc atttcaagat tttctaaatc cactttagca
      661 atttctactt cttgatactc tcttggctta cgataaaaca caaaaagcgc tagaaaaagt
      721 cctgctatca tacaaatagc agcgaaatac atagtatttg taacatcatt taaagatgca
      781 cttacattat ttgcatttaa attatctttt aaaagatctt gaaaagtaag cccaaaacct
      841 actggcaaaa ccatataagg cgtagtaagt ccaaaagtta aagcacaagc aaccgctcta
      901 cgatcgattt taagtttatt aaaaagactt aaaagaggtg gaatcaacaa aggtataaaa
      961 gctacatgaa taggaattaa attttgagaa aaacaagaaa tcaaagctat agacaaaagc
     1021 aataaatatt ttttatgaga tataaaatga cttactatct taatcaaata tgcagttaaa
     1081 tttgtctttg aaatcgctgc ggcaatggcc cctaaaagta tatagctaag agctgttttt
     1141 aaattttctt tcattccgct tataagtata ttcatagtat ctacgagttc aagatgagaa
     1201 aatacacctg caacaagagc tgagatcaaa agactcaaaa gtacattaaa acgaaacaaa
     1261 caaagtaaag tcatcaaaac aacactgata atgataggat tagtaagtaa agtcaaaatc
     1321 attccttaaa taattttaaa aatttaattg tagaaaaaac ttagttaaaa tgtaataaaa
     1381 ctcgaacata tgatgattt
//
LOCUS       DAPIWQ010000209         1320 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.211, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000209 DAPIWQ010000000
VERSION     DAPIWQ010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1320
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.211"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..>1320
                     /locus_tag="RJ267_001770"
     CDS             <1..>1320
                     /locus_tag="RJ267_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDV7389595.1"
                     /translation="EFRLKKNSGNLFKAILNLEKVDPKKWIHCGDNWVGDYLKPSNLE
                     ISTNFYINQLLPYEEFALNRNSLDMDLQKIIGISKKIRLENTLTNLQEIGVSFGAPML
                     LPYVQWILNIALKNSIRCLYFIARDGYVLQKMTDMLIQAKKINIKTKYLYGSRESWRE
                     PFRNKDKLKIQLIDEYLDQEIDKQEIFAFVECCGTGETLDYIVKRIESNQQFKNMFFG
                     SLYLYRSKLNKTKTQSLFMLPLNENYTYGIELFVRSLQGQVLGYDKKDGRVIPVFDFL
                     EGEALQKFRYDEYIDGVMLFMEYIVKTDNYEKIFDNMNVTILYLNYLSNNYIDKKFIE
                     IMGNVPFILNGVKDRVGIFAPRLNNKITLDQKNSFFNWSVLRSCKDIRVKYNMDNDCY
                     FGLIGAVDIIKSHLSYKLGKVILLNIKNPLKWIKLIVLIPILIFSHHE"
BASE COUNT          487 a          124 c          224 g          485 t
ORIGIN      
        1 gagtttagat taaaaaaaaa tagcgggaat ttgtttaagg ctatattaaa tttagaaaaa
       61 gttgatccaa aaaaatggat tcattgcggc gataattggg tgggggatta tcttaagccc
      121 tcaaatttgg aaatttctac aaatttttat attaatcagt tgcttccata tgaagaattt
      181 gcattaaacc gtaattcatt agatatggat ttgcaaaaaa taattggaat atctaaaaag
      241 ataagacttg agaatacctt gactaacttg caagagatag gagtttcatt tggtgcccct
      301 atgctattac cttatgttca gtggatttta aatattgctt taaaaaactc tattagatgt
      361 ttatatttta tagcaagaga tggttatgta ttgcaaaaaa tgaccgatat gttaattcaa
      421 gcaaaaaaaa ttaatattaa aacaaaatac ttgtatggtt ctcgagagtc ttggagagag
      481 ccttttagaa ataaagataa gttaaaaata cagctaattg atgagtattt ggatcaagaa
      541 attgataaac aagaaatttt tgcttttgtt gagtgctgtg gcacgggtga aactttggat
      601 tatattgtaa aaagaattga aagtaatcaa caatttaaaa atatgttttt tggcagttta
      661 tatttatatc gtagtaaatt aaataaaact aaaactcaat ctttatttat gctcccttta
      721 aatgaaaatt atacttatgg tatagaatta tttgttcgtt cgttacaagg tcaggtttta
      781 ggatatgata aaaaagatgg tagagtgatt cctgtttttg attttttaga aggggaggct
      841 ttgcaaaagt ttagatatga tgaatatatc gatggggtaa tgctttttat ggagtatata
      901 gtaaaaactg ataattatga aaaaatcttt gacaatatga atgtaactat tttatatctg
      961 aattatttaa gcaataatta tatagataaa aaatttatcg aaattatggg aaatgttcca
     1021 tttattctta atggagtaaa agatagagtg ggtattttcg ctcctaggtt aaacaacaaa
     1081 ataacattag atcaaaaaaa ttcttttttt aactggtctg ttttaagaag ttgtaaagat
     1141 attagagtta aatataatat ggataatgat tgttattttg gccttattgg tgctgtagat
     1201 attataaaat ctcatctttc ttataaattg ggtaaagtta tacttttaaa tattaaaaat
     1261 cctttaaaat ggataaagct gatagtttta attcctattt taattttttc tcatcatgag
//
LOCUS       DAPIWQ010000210         1319 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.212, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000210 DAPIWQ010000000
VERSION     DAPIWQ010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1319)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1319)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1319
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.212"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            26..568
                     /locus_tag="RJ267_001771"
     CDS             26..568
                     /locus_tag="RJ267_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferase"
                     /protein_id="HDV7389596.1"
                     /translation="MKNVIIIGAGGFTRELYSYLKDANYEIIGYIDIQENNFFDLKYL
                     GNEDNFDKKLIQKASFALGVGQINLRKKILVKLSKKSCNFITFIHPQSFVSKEAKIGQ
                     GVIVCPFVTINANSNIGDFVLCNIYSSIAHDCKVGEGSILSPYATLNGNSSIGKNCFL
                     ATRVSLLPCVNLEDNCIVSR"
     gene            641..961
                     /locus_tag="RJ267_001772"
     CDS             641..961
                     /locus_tag="RJ267_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase"
                     /protein_id="HDV7389597.1"
                     /translation="MKEINIIDFGLMGKQISALFYLLGYEIGVYNKSKLNIYEFEKQI
                     KLLQRKIDFSNFNAGKINIYQHIEDLKNSLTIESLNEDLNLKKEIMQILRDNNIVFSR
                     VWMI"
     gene            949..>1319
                     /locus_tag="RJ267_001773"
     CDS             949..>1319
                     /locus_tag="RJ267_001773"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389598.1"
                     /translation="MDDLNCDFIHFFNTIYIKLIELCGSNLERFTPLKDLKKLGFHII
                     CSKGNRGALANLLLFNEISSFFKIIEKYDYNFKECQTVYDLLYEKRNLLNIIDTIGIE
                     LCNKICKNLKEDDENFYHPKI"
BASE COUNT          526 a          151 c          191 g          451 t
ORIGIN      
        1 ttacttcttc ttttaggaga agtgcgtgaa aaatgtcatc atcataggag cgggtggctt
       61 tactagagag ctttattctt atttaaaaga tgcaaattac gaaattatag gctatattga
      121 tatacaagaa aataattttt ttgacttaaa atatctaggc aatgaagata atttcgataa
      181 aaagttgatt caaaaagcat cttttgcttt aggtgtagga caaatcaatt taagaaaaaa
      241 aatccttgta aaactttcaa aaaaatcatg taattttatc acttttatac atcctcaatc
      301 ttttgtttca aaagaagcta aaataggaca aggggttata gtgtgtcctt ttgtaaccat
      361 taatgctaat tcaaatatag gagattttgt gctttgtaat atttattcaa gcatagctca
      421 tgattgtaaa gtaggagaag gaagtatttt aagcccttat gctacactta atggaaattc
      481 aagcatagga aaaaattgtt ttttagctac tagagttagc ctgttgcctt gcgtaaactt
      541 agaagataac tgcatagtaa gcaggtagta ttattagcaa aaactacaca tccaatcaac
      601 ttatttttca taaaaatata attaaaacaa ggaaaaaaca atgaaagaaa ttaatatcat
      661 agactttggt ttaatgggta agcaaataag tgctttattt tatttattag gctatgaaat
      721 aggtgtttat aataaaagca agctcaatat atacgaattt gaaaaacaaa taaaacttct
      781 acaaagaaaa atagattttt ctaattttaa cgccggaaaa ataaacattt accaacatat
      841 agaagatctt aaaaatagct tgactataga aagcttaaat gaagatttaa atttaaaaaa
      901 agaaatcatg caaattctta gagataataa tatagttttt tcgagagtat ggatgattta
      961 aactgcgatt ttatacattt tttcaatact atttatatca aattaataga actttgtggt
     1021 tctaatttag aacgatttac cccattgaaa gatcttaaaa aattaggatt tcatatcatt
     1081 tgcagtaaag gcaatcgagg agctttagca aatttacttt tgttcaatga aatttcatca
     1141 ttttttaaaa ttatagaaaa atacgattat aatttcaaag aatgtcaaac agtttatgat
     1201 ttgctttatg aaaaaagaaa tttgttaaat attatcgaca ctataggcat agaactttgt
     1261 aataaaattt gtaagaattt aaaagaagat gatgaaaatt tttaccatcc aaaaatctt
//
LOCUS       DAPIWQ010000211         1287 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.213, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000211 DAPIWQ010000000
VERSION     DAPIWQ010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1287
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.213"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..800
                     /locus_tag="RJ267_001774"
     CDS             <1..800
                     /locus_tag="RJ267_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HDV7389599.1"
                     /translation="IKIFLLDHHQSGEECAQKYSWYLLDSKRCATKIVYDFFSKICTP
                     VLELSKFVDVVNAVDIWLSEDENFELGKVFLGLIANAKEINRVMFKESQIDYMFFLLD
                     KAWKFIGKENANILLDNATHFIKKDYFARKNDDTLSNLISCFVVEKLSELKENFSIEY
                     EGHKGILTSNIGNTSVIGNDFLVKNPDYDFFIDVSSRKTLSFRANGKIDVSLMAKNLV
                     GGGGHKNASGGLFATFKDGANYNHIKAQIIDLIKSKELKKENNESKQ"
     gene            784..1026
                     /locus_tag="RJ267_001775"
     CDS             784..1026
                     /locus_tag="RJ267_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389600.1"
                     /translation="MNQNNNKTLKNELEDLQYELSIVLEAMLLYAGVKRDKLENAIEA
                     YIDNIDNVLENSNKEGVDEILEVVEFLKNKYKDFFQ"
     gene            1023..>1287
                     /locus_tag="RJ267_001776"
     CDS             1023..>1287
                     /locus_tag="RJ267_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389601.1"
                     /translation="MKKCILIFFSLYSLSFANIYEKLNDFAYEKKPNKDFKIQDVKLV
                     QFSQENKDCLELLIEAGQVRILNSYNSCQKLSKDESFQKFLNED"
BASE COUNT          493 a          131 c          212 g          451 t
ORIGIN      
        1 atattaaaat ttttcttctt gatcatcatc aaagtggcga agaatgtgct caaaaatatt
       61 cttggtattt acttgattct aaaagatgtg caactaaaat cgtttatgat tttttctcta
      121 aaatctgcac ccctgtttta gagctttcaa aatttgttga tgtggttaat gctgttgata
      181 tttggctaag cgaggatgaa aattttgaac ttggaaaggt ttttttaggc ttgattgcca
      241 atgcaaaaga aataaatcgc gtgatgttta aagaatctca aatcgattat atgtttttct
      301 tgcttgataa ggcttggaaa tttataggaa aagaaaatgc gaatatttta ctcgataatg
      361 ctactcattt tataaaaaag gattattttg ccagaaaaaa tgatgatact ctttctaatt
      421 taatttcttg ttttgtagtt gaaaaactaa gcgagctaaa agaaaatttc agtatagaat
      481 atgaaggcca taaaggcatc ttaacttcaa atataggcaa tacttctgtt attggaaatg
      541 attttttagt aaaaaatcct gattatgact tttttattga tgttagttct agaaaaacct
      601 taagttttcg tgcaaatgga aaaatagatg taagtttaat ggctaaaaat ttagtaggtg
      661 gtggtggaca taaaaatgct agtggtggac tttttgcgac atttaaagat ggagcaaatt
      721 ataatcatat taaggctcaa attattgatt taattaaaag caaagaactt aaaaaggaaa
      781 acaatgaatc aaaacaataa taaaacctta aaaaatgaac tagaagattt acaatatgag
      841 cttagcatag ttttagaagc tatgctttta tacgctggag ttaaaaggga caaattagaa
      901 aatgcaatag aagcttatat tgataatata gataatgtgc tcgaaaattc caacaaagaa
      961 ggggttgatg aaattttaga agtggtggaa tttctaaaaa ataaatacaa agattttttt
     1021 caatgaaaaa gtgtatttta atttttttta gtttatattc tttaagtttt gccaatattt
     1081 atgaaaaatt aaatgatttt gcttatgaaa aaaaaccaaa taaagatttt aagattcaag
     1141 acgttaaatt agtgcaattt tcacaagaaa ataaagattg ccttgaactt ttaatagaag
     1201 ctggtcaagt tagaatttta aatagctata attcttgtca aaaattatct aaagatgaaa
     1261 gttttcaaaa atttcttaat gaagatt
//
LOCUS       DAPIWQ010000212         1280 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.214, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000212 DAPIWQ010000000
VERSION     DAPIWQ010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1280)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1280)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1280
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.214"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..728
                     /locus_tag="RJ267_001777"
     CDS             <1..728
                     /locus_tag="RJ267_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HDV7389602.1"
                     /translation="HNFTSFVLLDEVDFNFSELKSILEDKFNIKIADENFTKEGVIFS
                     YENMLVTLNLINNPIPNHEVEYYANFNFMWKDALEQTKKHKAHLLIAVLSQDQSKLEQ
                     AKMFTKIAALCLDNKHALGFYTGAVVLEPSFYIENAKMLDDNRLPVYNWIYVSVYPSE
                     NGVNAYTYGLRNFDKLELEVCDLNIEEKELFFCIYDIVLHILTYDINLKDKDILKFED
                     GKEIKFIKSQGISVENESLKIIF"
     gene            792..1208
                     /locus_tag="RJ267_001778"
     CDS             792..1208
                     /locus_tag="RJ267_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HDV7389603.1"
                     /translation="MKAKLTLLALLGTTVLLAKDMVVPASELPNNAKEFISKNFKTAQ
                     IGLVKKDIDSYDVILNDGTEIDFMINGEWKEVDGKYKALPHTILPNVMKKVSATQPNA
                     QILEVDKEINGYKFKFNNNMEVYTDMQGNILGQKLD"
BASE COUNT          483 a          140 c          210 g          447 t
ORIGIN      
        1 atcacaattt tacctctttt gttcttcttg atgaagttga ttttaatttt tcggagttaa
       61 aaagcatttt agaagataaa tttaatataa aaatagctga tgaaaatttt accaaagagg
      121 gcgtgatttt ttcatatgaa aatatgttag ttactctaaa tttgattaac aatcctatac
      181 ctaatcacga agtagaatac tatgcaaatt ttaattttat gtggaaagat gccttagagc
      241 aaactaaaaa acataaagct catcttctta tagcggtgct aagtcaagat caaagcaaat
      301 tagaacaagc taaaatgttt acgaaaattg cagctttatg tttggataat aaacatgctt
      361 taggttttta tacaggtgca gttgttttag agcccagttt ttatatagaa aatgcaaaaa
      421 tgttagatga taatcgcttg ccggtatata attggatata tgttagtgtt tatcctagtg
      481 aaaatggagt taatgcttat acttatgggc ttagaaattt tgataaatta gaacttgaag
      541 tttgtgattt aaacatagaa gaaaaagaac ttttcttttg tatttatgat attgttttgc
      601 atattttaac ttatgatatt aatctaaaag ataaagatat tttaaaattt gaagatggaa
      661 aagaaataaa atttataaaa agtcaaggta taagtgttga gaatgaaagc ttgaaaatta
      721 ttttttaagt ttcacattca cttcacagtt ttgagttaaa ctttcgccaa ccaagaaaaa
      781 aaggagaaat tatgaaagca aaactaactt tacttgcttt gttgggtact acggtgcttt
      841 tagctaaaga tatggttgtt cctgctagcg aacttccaaa taatgccaaa gaatttattt
      901 ctaaaaattt taaaaccgct caaattggtt tggtgaaaaa agatatagat tcttatgatg
      961 tgattttaaa tgatggaact gaaattgatt ttatgatcaa tggagagtgg aaagaagttg
     1021 atggaaaata taaggctttg ccacatacta tcttacctaa tgttatgaaa aaagtgagtg
     1081 caactcaacc aaatgctcaa attcttgaag tagacaaaga aattaatggt tataaattta
     1141 agtttaataa caatatggaa gtttatacag atatgcaagg aaatatccta ggtcaaaaat
     1201 tagattaatt tttgaaaatt taactccctt agaaaatttg atgcaaaaat ttggaagcat
     1261 agtcttccaa atttttattt
//
LOCUS       DAPIWQ010000213         1266 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.215, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000213 DAPIWQ010000000
VERSION     DAPIWQ010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1266
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.215"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..686
                     /locus_tag="RJ267_001779"
     CDS             <1..686
                     /locus_tag="RJ267_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="capsule biosynthesis protein CapA"
                     /protein_id="HDV7389604.1"
                     /translation="GSLNSEVFYINLLLQNEKFKEADDRLEQVICKNKKKFFDLLLGY
                     GQNPTFPYDIYMNYYFKDFDQYSNIFYVACRIFSEFNIPESRVNTYYPNFHPIIFDQF
                     KMFIFKDLPKSDQEIGAVKKIRNHLAYKLGVAAIKNSKSLWGYIRMPYVLSYIRDMHK
                     ESQNKMDKKSISLEYYSDYESALKEKEGFVYKLGQIIIKAHKNWHKGGYIMLWFEVKK
                     LKKEFKKGK"
     gene            686..1231
                     /locus_tag="RJ267_001780"
     CDS             686..1231
                     /locus_tag="RJ267_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HDV7389605.1"
                     /translation="MAIEFDIQESKILKGVYIITPNKFRDLRGEIWTAFTDEYLSKLV
                     PDGIKFKHDKFINSHFNVLRGIHGDVKTYKLVTCVYGEVHQVVVDCRKDSPTYLKWEK
                     FIISYKNQQLILLPPNMGNSHYVSSKEAVYYYKLAYEGEYMDAPDQFTYAWNDERIGI
                     DWPTNTPILSDRDILATKNKG"
BASE COUNT          488 a          129 c          214 g          435 t
ORIGIN      
        1 ctggtagctt aaattctgaa gtgttttata ttaatttgtt gttgcaaaat gaaaaattta
       61 aagaagcaga tgataggttg gagcaagtaa tttgtaaaaa taaaaaaaag tttttcgact
      121 tattgctagg atatggccaa aatccaactt ttccttacga tatttatatg aattattatt
      181 ttaaagattt tgatcagtat agtaatattt tctatgttgc atgtaggatt ttttctgaat
      241 ttaatattcc agaatctagg gtcaatactt attatcctaa ttttcatcct ataatatttg
      301 atcaatttaa aatgtttatt tttaaagatc ttcctaaaag cgatcaagaa ataggtgctg
      361 taaaaaagat tcgtaatcat ttagcttata aacttggcgt tgctgctatt aaaaattcta
      421 aatctttatg gggatatata aggatgccat atgttttgtc ttacataaga gatatgcata
      481 aagaaagcca aaataaaatg gataaaaaat ctattagttt agaatattat tctgattatg
      541 agtcggcttt aaaagaaaaa gagggttttg tttataaatt aggacagatt ataatcaaag
      601 ctcataaaaa ttggcataaa ggaggatata ttatgttgtg gtttgaggtt aaaaaattaa
      661 aaaaagaatt taaaaaagga aaataatggc aatagaattt gatatacaag aatcaaaaat
      721 tttaaaagga gtgtatatta taactcctaa taaatttaga gatttaagag gtgaaatttg
      781 gacagctttt acagatgaat atttaagcaa gttggttcca gatggaatta aatttaagca
      841 tgacaaattt ataaattccc attttaatgt tttacgtgga atacacggag atgtgaaaac
      901 ttacaaactt gtaacttgtg tctatggaga agtgcatcaa gttgtggttg attgcagaaa
      961 agattcccca acttatttaa aatgggagaa atttattata agttataaaa atcagcaact
     1021 tattttatta ccaccaaata tgggaaattc tcattatgtg agttcaaagg aagcagtgta
     1081 ttattataaa cttgcttatg agggggaata tatggatgca cctgatcaat ttacttatgc
     1141 atggaatgat gaaagaattg gtatagattg gccaacaaat acgcctattc tttccgatcg
     1201 cgatattctt gcaactaaaa ataaaggata aattatggaa aaattattaa aagaattaaa
     1261 taataa
//
LOCUS       DAPIWQ010000214         1255 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.216, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000214 DAPIWQ010000000
VERSION     DAPIWQ010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1255)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1255)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1255
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.216"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            70..393
                     /locus_tag="RJ267_001781"
     CDS             70..393
                     /locus_tag="RJ267_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389606.1"
                     /translation="MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKI
                     NKETYHCKGDKYDLGCMTLFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEG
                     EGIWE"
     gene            384..761
                     /locus_tag="RJ267_001782"
     CDS             384..761
                     /locus_tag="RJ267_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vapd"
                     /protein_id="HDV7389607.1"
                     /translation="MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQ
                     YSGYTSKEPINERRVIRIVNKLTKKFTWLGECVKEFDITEIGEQYSLKETIQDLCAKD
                     FHQKLKEFTEKTPKNQKLKDLER"
     gene            758..>1255
                     /locus_tag="RJ267_001783"
     CDS             758..>1255
                     /locus_tag="RJ267_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDV7389608.1"
                     /translation="MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIHLDEILEVKISST
                     KSQEKRKIKDLKQKLKAGDLLIATELSRLGRSMLEIINLVLEFNSNNIKFLFLRQMEL
                     SNFNNPASKLILSVYAYLAENERDLISQRTKAGLENARASGKKLGRPKGSLNSIYDKD
                     IDKIQT"
BASE COUNT          548 a          119 c          209 g          379 t
ORIGIN      
        1 aaagctttta tttaagtatt agctattttt tactagaatt tgttaggttt ttgatgaaag
       61 gataaaaaaa tggcataccc acttttaggt acaagaatag tattagatga agaaaagatt
      121 ttaaaagaag gcaaatataa tttagaagat atgtataaaa tgatagatga atatgctaaa
      181 gaatcaggaa tgataaaaat taataaagaa acttatcatt gtaaagggga taagtatgat
      241 ttaggttgta tgactttatt tatatataaa tatttgattg attctgaatg gtttacaaaa
      301 aatgcaaaag aatggatttg gattagtgaa aaagaaggaa atagcgattt aatttctgca
      361 agtaaagctg aaggagaagg aatttgggaa taaatcgcaa agcaattaat tttgatttat
      421 ctacaaaaag tcttgaaaaa tatttcaaag atacaagaga accttattct ttgattaaaa
      481 aatttatgct tgaaaatggt ttcgagcata gacaatattc aggttatact tcaaaagagc
      541 caataaatga aagacgagtt ataagaatag ttaataagct cactaaaaaa tttacttggc
      601 ttggcgaatg tgttaaagag tttgatatta ctgaaatagg agagcagtat agcttaaaag
      661 agactataca agacttatgt gctaaagatt ttcatcaaaa acttaaagaa tttactgaaa
      721 aaacaccaaa aaatcaaaag ttaaaagatt tagaacgatg aatatagcat acataagagt
      781 atcaacaaat aaacaagaat tagactctca aaagttagaa attatggaat attgtcataa
      841 aaacaatatt catttggatg aaattttgga agtaaaaata agttctacaa aatctcaaga
      901 gaaaagaaaa atcaaggatt taaaacaaaa actaaaagca ggtgatttat taatagcaac
      961 agaactttca agacttggta gaagtatgtt agaaataatt aatttagtgc ttgaatttaa
     1021 ttctaataat attaaattct tatttttaag acaaatggaa cttagtaatt ttaataatcc
     1081 tgcttctaaa ttaatcttat cggtttatgc ttacttagca gaaaatgaaa gagatttgat
     1141 aagtcaaaga actaaagcag gactagaaaa tgctagagct agtggaaaaa aactgggacg
     1201 ccctaaaggc tcattaaata gtatttatga taaggatata gataaaatac aaacc
//
LOCUS       DAPIWQ010000215         1249 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.217, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000215 DAPIWQ010000000
VERSION     DAPIWQ010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1249)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1249)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1249
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.217"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            93..1157
                     /locus_tag="RJ267_001784"
     CDS             93..1157
                     /locus_tag="RJ267_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDV7389609.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEV
                     NFALTKGVKNIEELDALAKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEEL
                     IVEVLASVTGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSK
                     GVKLPEFMSEEELKKFLDAIENADFKNNTIRNKLILKIIIFTGIRVSEAINIKMGDIS
                     EENDLYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSY
                     VSRIVEQLLFHAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSDS"
BASE COUNT          487 a          168 c          190 g          404 t
ORIGIN      
        1 tttttcctaa aaaagctttt ttttactaag ttaatactaa aatacctttt ctaattaaaa
       61 agctaaaaat ttatatttta ggaaaagttt ttatgaaata ccctttagat tgtgaagaaa
      121 attttgaaaa atcattttta ttttggctgg caaaatatgt aaaatttaaa ctcaattcgc
      181 tatctaacaa agagttaaaa aatccacaag ctttagcaga agttaatttt gcccttacaa
      241 aaggtgtaaa aaacattgaa gaacttgacg ctctagcaaa aaaagcaaga aatgctggtt
      301 taagtggagt taatacttat tttaacccct taaaaaaagt gtttgaatat ttaaattttt
      361 acaagcttta ctctttaaaa cagattgatg aggaactcat tgtagaagtt ttagcaagtg
      421 taacaggtgc tttatcagat gcaagtaaaa aaaattaccg tattgctgtg attaattttt
      481 ttgatttttt agacaagcaa aacgaagaag atgaaaaagc acatattttt gatatcaatc
      541 ttaaaaactg ggcaggtata gcaggttcta aaggggtgaa attacccgaa tttatgagtg
      601 aagaagagct taaaaaattt cttgatgcta ttgaaaatgc agattttaaa aacaatacca
      661 tacgcaataa acttattctt aaaatcatca tttttacagg catacgggta agcgaagcta
      721 tcaatatcaa aatgggtgat attagcgaag aaaacgatct ttatatcata agaataagag
      781 ctaaaggcaa taaatatcgt gttgtaatga taaaaaaaga acttatttac gatttactta
      841 aaaatgtaag tattaattat atgagtaaag acgccctact ttttgtcaat aaaaaaggca
      901 ctccactgac tcaatcttat gtcagtcgta tagtagaaca gcttttattt cacgcaggaa
      961 ttcgcaaaca aaaaaatggt gctcacatgt tgcgtcatac ttttgccacc ctgctttata
     1021 aaaaacaaaa agatttagtt ttagttcaag aagctttagg gcatgcaagt ttaaatactt
     1081 caagaattta cactcatttt gataatgata aattaaaact tgccgcacag gttgcaaagg
     1141 aattaagtga ttcttgaaaa ctatgctgtt tttggtaaat atttttacca tgatttaaaa
     1201 cacgctttaa aagcctttaa ccacaaagaa agtaaaaaat gctttaaat
//
LOCUS       DAPIWQ010000216         1221 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.218, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000216 DAPIWQ010000000
VERSION     DAPIWQ010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1221)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1221)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1221
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.218"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1204)
                     /locus_tag="RJ267_001785"
     CDS             complement(<1..1204)
                     /locus_tag="RJ267_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HDV7389610.1"
                     /translation="MNFRSLNLSTKLILSVAIGIVLGIVVIVLTVSIYTSKSMEKEAK
                     DSIFLSSKRYVNYMEGILNEEVVLTKAMATSLNEIFSKNDQVNAGIIESLLRNTFDSS
                     GYAAYAFLYLQDSSILTHVESLDKNFKNSDGKSVTMIFFDETTGKAGGIKSIHAPSNF
                     SQLPIIEKIKKNARYGDLDTIFLGSPSRLNYDGTEFLGINLGMPLFNKEGKFIGIVGF
                     TFDFLEISETILDPKLDFYKDDLRFLITDQGVIVIHKNKDAILKTLPEINQDASVQLI
                     IDAVKNHKDLIIDNYVDLSGNLSYAGVASFSTLGDSSHWSMVVTAPKKSIFAPLYELN
                     FILISIAIIVLIAILIILYFCVKNIVGSKLPIIVNSLQNFFDFINHKTKNVSTIEVKS
                     NDELGQMGK"
BASE COUNT          436 a          192 c          143 g          450 t
ORIGIN      
        1 ttttacccat ttgccccaat tcatcattgc tttttacttc tatagtagaa acattttttg
       61 ttttatggtt gataaagtca aagaaatttt gcagggaatt aactataatt ggaagtttag
      121 atcctactat attttttaca caaaaataca gaataattaa aatagcaatt aatacaataa
      181 ttgcaatact aattagaata aaattcaatt catataaagg cgcaaaaata gattttttag
      241 gtgctgttac aaccatgctc caatgactcg aatctcctaa ggtactaaat gaagcaactc
      301 ctgcatagct taaatttccg cttaagtcaa cataattatc aataatcaaa tctttatgat
      361 ttttaacagc atcaataatt aattgcacgg atgcatcttg attaatttca ggtaaagttt
      421 ttaaaatagc atctttgttc ttatgaataa caataacacc ttgatctgtt attaaaaatc
      481 ttaaatcatc tttataaaaa tctaacttcg gatcaagtat tgtttcagat atttctaaaa
      541 aatcaaaagt aaatccaact ataccgataa attttccttc tttattaaat aagggcattc
      601 ctaagttaat acctaaaaat tctgttccat cataattaag tcttgatgga gatcctaaaa
      661 atatagtatc aagatcacca tatcttgcat tttttttaat tttttctata ataggtagtt
      721 gtgaaaaatt gctcggagcg tgtatgcttt taataccgcc tgccttccct gtggtttcat
      781 caaaaaaaat cattgttaca cttttgccat cagagttttt aaaattttta tctaaagatt
      841 caacatgagt tagtatagaa gaatcctgta aataaagaaa agcataagct gcataaccgc
      901 tactatcaaa tgtatttctt aaaagacttt ctattatacc agcgttcact tgatcatttt
      961 ttgaaaatat ttcatttaat gaagtggcca ttgcttttgt taatacaacc tcttcattta
     1021 aaataccttc catgtaattg acatatcttt ttgaagacaa aaatattgaa tctttagctt
     1081 ctttttccat acttttagaa gtatatatag atacggttaa aacaattaca actatgccta
     1141 agactattcc tattgctaca gataaaataa gcttagtact taaatttaga gaacgaaaat
     1201 tcatattttt cctttttgtg a
//
LOCUS       DAPIWQ010000217         1201 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.219, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000217 DAPIWQ010000000
VERSION     DAPIWQ010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1201)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1201)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1201
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.219"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..785)
                     /gene="selD"
                     /locus_tag="RJ267_001786"
     CDS             complement(<1..785)
                     /gene="selD"
                     /locus_tag="RJ267_001786"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(735..737),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HDV7389611.1"
                     /translation="MQYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQKTPALLSDIG
                     NNEDASVYQISPDLALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCNHDLNILKELLEGANDKVKECNALVVGGHTIESTELFFGLSVTGKVHPSKFI
                     ANNTSKIGDCIILTKPLGTGILSTALKAQMLNQKHLDIMLKNMIELNYKASQIALKFH
                     PSAMSDVTGFGLLGHLKEMLNKNISFEIFESELPFLDGVKEYF"
     gene            complement(795..>1201)
                     /gene="yedF"
                     /locus_tag="RJ267_001787"
     CDS             complement(795..>1201)
                     /gene="yedF"
                     /locus_tag="RJ267_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HDV7389612.1"
                     /translation="DENAQEFCIKVQKKNFDSSEVNIHDYNVLFLKTDKVGEGELGQN
                     LLVGFLSTLKNLDHAPSKILCVNESVLINVDENHKAHLAMKELENLGIEIISCGACLE
                     FFNKSKELKIGNIGNAYEILNELFGKAKIITL"
BASE COUNT          394 a          216 c          149 g          442 t
ORIGIN      
        1 ttaaaatact cttttactcc atctaaaaaa ggaagttcac tttcaaaaat ttcaaaagaa
       61 atatttttat ttagcatttc ttttaaatgt cctaaaagtc caaaacctgt aacatcactc
      121 atggcacttg gatgaaattt aagagcaatt tgactggctt tataatttaa ctctatcatg
      181 tttttaagca ttatatctaa atgtttttga tttaacattt gcgcctttaa agctgtactt
      241 aaaattcctg ttcctaaagg cttggttaaa atgatacaat ctccgatttt agaagtatta
      301 ttagcaataa atttactagg atgtactttt cctgtaacac taagtccaaa aaaaagctcg
      361 gtgctttcta tagtatggcc acccacgact aaagcattac attctttaac tttatcattt
      421 gcaccttcta aaagctcttt taagatgttt aaatcatgat tgcaagtatc aaaacctact
      481 atatttaagg cattaattac ctctgcaccc atagcaaaaa catcgcttaa agcatttgct
      541 gcagcaatag caccaaaatg ataagcacta tctactatag gagtgataaa atcaagcgtt
      601 tgcaccaaag ctaaatcggg gctgatttga tatacgcttg catcttcatt atttccgata
      661 tcactaagta aagcaggagt tttttgcatg aaatttaaaa ttgttttaag accacccggg
      721 cttaatttcg ctgctcagcc tgctgcttta acaaaatgcg ttaaattttg atttttatat
      781 tgcagtgttt ttccttatag agtaatgatt tttgctttac caaaaagctc gtttaaaatt
      841 tcataagcat tgcctatatt tcctatttta agttctttgc ttttattaaa aaattctaga
      901 caagctccac aacttatgat ctcaatacct aaattttcaa gttctttcat agctaaatgt
      961 gctttatgat tttcatcaac attgattaaa acactttcat ttacgcaaag aattttactt
     1021 ggagcatgat ctaaattttt taaggtactt aaaaatccta caagtaaatt ttgtcccaat
     1081 tcaccctcac ccactttgtc ggtttttaaa aataaaacat tataatcgtg aatatttact
     1141 tcactagaat caaaattctt tttttgtact ttgatgcaaa actcttgtgc attttcatct
     1201 a
//
LOCUS       DAPIWQ010000218         1184 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.220, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000218 DAPIWQ010000000
VERSION     DAPIWQ010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1184)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1184)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1184
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.220"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..147
                     /locus_tag="RJ267_001788"
     CDS             <1..147
                     /locus_tag="RJ267_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7389613.1"
                     /translation="KSKAKSLNLAPNYYIIISKNGFSKEIDKICEQNLLLLDLNDFKI
                     LLEE"
     gene            151..1170
                     /gene="flgS"
                     /locus_tag="RJ267_001789"
     CDS             151..1170
                     /gene="flgS"
                     /locus_tag="RJ267_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system sensor
                     histidine kinase FlgS"
                     /protein_id="HDV7389614.1"
                     /translation="MNESILKSLDSNEKETLQKGLESLIEQTYVIENEYKTLNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKNPKLLSIISLDKIRDELEFEGRFY
                     AVKIIAHNEKTIVSATDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFAR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINALNFNLLELKEECESAINSYNF
                     TSQIDFEISFLDKQICADKALLGLVLQNLIYNAIDAIEESECEKPMIKILASYDNEKI
                     CIRVYDNGCEIKDEKLVFEAFKTTKLKGNGLGLSLSKEIINAHKGELSFQSDPKNFYF
                     TLPLV"
BASE COUNT          439 a          143 c          209 g          393 t
ORIGIN      
        1 aaatcaaaag caaagtcttt aaatttggct ccaaattatt acattataat ctcaaaaaat
       61 ggttttagca aggaaattga taaaatatgt gaacagaatt tgcttttact tgatttgaat
      121 gattttaaga ttttattaga ggaatgataa atgaatgaaa gtattttaaa aagtttagac
      181 tcaaatgaaa aagaaaccct acaaaaaggc ttagaaagtc ttatagaaca aacttatgta
      241 atagaaaatg aatacaaaac tttaaatgaa aactataact ccttacgcgc aatggttgat
      301 gagattatag aggtgttgcc tagtgcgctt tggattttag ataaagaaaa aaatattatt
      361 ttacaaaatc aagaagcctt gaaaaatcca aaattactta gtatcattag tcttgataaa
      421 attcgtgatg agcttgaatt tgaaggtagg ttttatgcgg taaaaatcat agcgcataat
      481 gaaaaaacta tagtttcagc tacagatatt agcgatgaaa aacgcaatga aaggcttgca
      541 agcatgggta gtgtagcggc tcatttggca catgagataa gaaatcctat tggatctata
      601 tctttacttg cttcaaccct ttttgctcgt agtgagctta aaaataagca tatagttctt
      661 gaaatccaaa aggctattgc tagagtggag cgtatcgtaa attcaactct actttttact
      721 aagggtgtac acatcaatgc tttaaatttt aatcttttag agttaaaaga agagtgtgaa
      781 agtgccatta actcttataa tttcacttct caaatagact ttgaaatatc ttttttggat
      841 aagcagattt gtgctgataa agctcttctt ggtttggttt tgcaaaattt gatttataat
      901 gctattgatg cgatagaaga aagcgaatgt gaaaagccta tgattaaaat tttagcaagt
      961 tatgataatg aaaaaatatg catcagagtg tatgataatg gttgtgaaat aaaagatgag
     1021 aaattggttt ttgaagcttt taaaacaaca aaacttaaag gcaatggact tggcttgtct
     1081 ctttctaaag aaatcataaa cgctcataag ggagagttaa gttttcaaag tgatcctaag
     1141 aatttttatt ttaccttacc tttggtgtga taaatatttt cttt
//
LOCUS       DAPIWQ010000219         1131 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.221, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000219 DAPIWQ010000000
VERSION     DAPIWQ010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1131)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1131)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1131
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.221"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..1120
                     /locus_tag="RJ267_001790"
     rRNA            <1..1120
                     /locus_tag="RJ267_001790"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          302 a          236 c          318 g          275 t
ORIGIN      
        1 ctcccgactg tttaccaaaa acacagcact ctgctaactc gtaagaggat gtatagggtg
       61 tgacgcctgc ccggtgctcg aaggttaatt gatggggtta gcattagcga agctcttgat
      121 cgaagcccga gtaaacggcg gccgtaacta taacggtcct aaggtagcga aattccttgt
      181 cggttaaata ccgacctgca tgaatggcgt aacgagatgg gagctgtctc aaagagggat
      241 ccagtgaaat tgtagtggag gtgaaaattc ctcctacccg cggcaagacg gaaagacccc
      301 gtggaccttt actacagctt gacactgcta cttggataag aatgtgcagg ataggtggga
      361 ggctttgagt atatgacgcc agttgtatat gagccattgt tgagatacca ctctttctta
      421 tttgggtagc taaccagctt gagttatcct caagtgggac aatgtctggt gggtagtttg
      481 actggggcgg tcgcctccca aataataacg gaggcttaca aaggttggct cagaacggtt
      541 ggaaatcgtt cgtagagtat aaaggtataa gccagcttaa ctgcaagaca tacaagtcaa
      601 gcagagacga aagtcggtct tagtgatccg gtggttctgt gtggaagggc catcgctcaa
      661 aggataaaag gtaccccggg gataacaggc tgatctcccc caagagctca catcgacggg
      721 gaggtttggc acctcgatgt cggctcatcg catcctgggg ctggagcagg tcccaagggt
      781 atggctgttc gccatttaaa gcggtacgcg agctgggttc agaacgtcgt gagacagttc
      841 ggtccctatc tgccgtgggc gtaagaagat tgaagagatt tgaccctagt acgagaggac
      901 cgggttgaac aaaccactgg tgtagctgtt gttctgccaa gagcatcgca gcgtagctaa
      961 gtttggaaag gataaacgct gaaagcatct aagcgtgaag ccaactctaa gatgaatctt
     1021 ctctaagctc tctagaagac tactagtttg ataggctggg tgtgtaatgg atgaaagtcc
     1081 tttagctgac cagtactaat agagcgtttg gcttatcttt aataaagcat c
//
LOCUS       DAPIWQ010000220         1124 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.222, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000220 DAPIWQ010000000
VERSION     DAPIWQ010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1124)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1124)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1124
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.222"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(13..1110)
                     /locus_tag="RJ267_001791"
     CDS             complement(13..1110)
                     /locus_tag="RJ267_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HDV7389615.1"
                     /translation="MKTSFLAHSVAIVRSNFKGLLFTACIVIFAMYLSSVQSIKDTTH
                     LAATAFAIIIGVLLSPWFFKYQHHFQAGVHFSAKKLLRLGIVLYGFNITLTELLSVGL
                     KGFLLSAIVIFFVFIIALFVGTKIFKLDKETSMLVGAGSAICGAAAVLALESSLKSDP
                     FKGILAVGTVVIFGLVFMFLYPIAFSLNLFPFFDQNAMGVFMGATLHEVANVAGAAEM
                     AKDMAGFEQGASNVAVIIKMMRVILLVPFLLIVTYFFAKNQHSSSGKTAKSITIPYFA
                     FAFLGMIVLNTYLASKESILGIATSDIISLGKTLCTLCIVFAMAALGLQIDFKKFLKS
                     GSRVFGLAFVLGLVLIFGGYFLTLAFKGILW"
BASE COUNT          449 a          229 c          142 g          304 t
ORIGIN      
        1 aaataatttt tattaccaaa gtataccttt aaaagctaag gttaaaaaat atcctccaaa
       61 aatcaaaaca agccctaaaa caaaagccaa gccaaatacc ctagagccac tttttaaaaa
      121 ttttttaaag tcaatttgca agcctaaagc tgccatagca aaaacgatac ataaagtaca
      181 aagtgtttta cctaaagaga tgatatcgct cgtagcaata cctaaaatac tttctttgct
      241 tgctaaataa gtatttaaaa ctatcatgcc taaaaatgca aaagcaaaat aaggtatagt
      301 gatacttttt gcagtttttc cactgcttga atgttgattt ttagcgaaaa aataagtcac
      361 tataagcaaa aaaggcacaa gtaaaatcac tctcatcatt tttataatca ctgcaacatt
      421 agaagcacct tgctcaaatc ctgccatatc ctttgccatt tcagcagcac ctgcgacatt
      481 tgccacctca tgcaacgtag ctcccataaa aacacccata gcattttgat caaaaaaagg
      541 aaaaagattt aaagaaaaag ctatgggata taagaacata aatacaagtc caaaaatcac
      601 caccgtacct acagctaaaa ttcccttaaa aggatcactt ttcaaacttg actctagtgc
      661 taaaaccgct gccgcaccgc aaatcgcact tccagctcca acaagcatag aagtttcttt
      721 atcgagttta aaaattttcg ttcccacaaa taaagcaata ataaaaacaa aaaatatcac
      781 tatagcagaa agcaaaaatc ctttcaatcc tacacttaaa agctcagtta aagtgatatt
      841 aaaaccatat aaaacaatgc caagtcttaa aagttttttc gcactaaaat gcactccggc
      901 ttgaaaatga tgttggtatt taaaaaacca aggagaaagc aacactccta tgataatagc
      961 aaaagcagtc gctgctaaat gagtggtatc tttgatactt tgaacactag aaagatacat
     1021 agcaaaaatc actatacaag cagtaaaaag caaaccctta aaatttgatc gcactatagc
     1081 cacgctatgt gctaaaaaac ttgttttcat ttattttcct tttt
//
LOCUS       DAPIWQ010000221         1118 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.223, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000221 DAPIWQ010000000
VERSION     DAPIWQ010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1118
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.223"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            96..>1118
                     /locus_tag="RJ267_001792"
     CDS             96..>1118
                     /locus_tag="RJ267_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HDV7389616.1"
                     /translation="MMSNLAPQNDVLNLTPSKTSTTSSSFSKTSKNKEHESSDSKNST
                     QDDTESFLNSLLNSINETNEFLPDHMKISQKEVVNEAMSRLQKGAFDESDKISIFESA
                     SFMQILSLLDKLKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLG
                     LNVKNIKVDRLLDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTT
                     HTTSTHSMQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDAKNT
                     LKNIKNDEFAKNLTEELNIKDKKNQDNLNKESKDLNKDFNKELNKNQEKNNLNQENIQ
                     DQNKNLK"
BASE COUNT          489 a          136 c          154 g          339 t
ORIGIN      
        1 aagatgatta aagtatatga agattcttat ttgaaagaaa aatttcctaa tgtaatggta
       61 gataaatttt taaaataatt ttttttgaag gaaaagtgat gtcaaattta gctccgcaaa
      121 atgatgtttt aaatcttacg ccgagtaaaa cttctactac tagcagttct tttagtaaaa
      181 ctagtaaaaa taaagaacat gaaagtagtg atagtaaaaa ttcaactcaa gatgatacgg
      241 aaagtttttt aaattctttg cttaattcta tcaatgaaac caatgaattt ttacctgatc
      301 atatgaagat cagtcaaaaa gaagttgtta atgaagcgat gagcagactt caaaaaggag
      361 cttttgatga gagcgataag ataagcattt tcgaatctgc ttcttttatg caaattcttt
      421 ctttgttaga taagctaaaa acagatacag cagatgttaa actagcaaat ctttctactc
      481 aactttcaag tcttattaaa acagaggcta attttaatgc tttaaaaggt gcatcaaatc
      541 ttagtgagct tttggacata gctaaagatc tgggcttaaa tgtaaaaaat attaaagtag
      601 atcgtcttct tgatcttaaa gcaacttttc caaatttaga taaggctgat ttttttaagg
      661 gtgctgtgga taatgttttt aaagaaatca tcaataataa aatttccaat gtgagtaaaa
      721 atttaaatca caatttagaa aatacaactc atactacaag cactcattct atgcaaaaaa
      781 caaattctaa agatagcggt tctttgcttt ctcaaacttt aaaaaattta gattccatac
      841 tttcatccaa agaaagcaaa cacgaaaaaa acgataaagt taaatcaaaa atagaagaag
      901 ataccacaga tgctaaaaat actttaaaaa atatcaaaaa tgatgagttt gcaaaaaatt
      961 taacagaaga gttaaatata aaagataaaa aaaaccaaga taatttaaat aaagaaagca
     1021 aagacttaaa caaagatttt aataaagagt taaataaaaa tcaagaaaaa aacaatttaa
     1081 atcaagaaaa tatacaagat caaaataaaa atttaaag
//
LOCUS       DAPIWQ010000222         1115 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.224, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000222 DAPIWQ010000000
VERSION     DAPIWQ010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1115)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1115)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.224"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..922
                     /gene="rsmH"
                     /locus_tag="RJ267_001793"
     CDS             <1..922
                     /gene="rsmH"
                     /locus_tag="RJ267_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HDV7389617.1"
                     /translation="HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKF
                     IACDQDQQALKFSKKRLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQL
                     DNNERGFSVNSDFLDMRMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKI
                     CLERSKNPIKSAKELYQIIGKGKQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLE
                     NLKPKNCILAIISFHSLEDRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKA
                     ISASKEELLKNSRSSCAKMRAFYFNNLDNK"
     gene            922..>1115
                     /locus_tag="RJ267_001794"
     CDS             922..>1115
                     /locus_tag="RJ267_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389618.1"
                     /translation="MLEDDFIKERQNIRQKMLKFSRAINQGKPLDDDLRDEISSDDIL
                     RRRFKKKTPNKFLEELDEEY"
BASE COUNT          449 a          147 c          172 g          347 t
ORIGIN      
        1 tcatatccca gttttactta atgaagttca agagattttt aaaaatctta aaacaggtta
       61 ttttttagac tgcactttag gatttggcgg acatagtgaa gctttgctta aaaatcatcc
      121 tgatcttaaa ttcattgctt gtgatcaaga tcaacaagct ttaaaatttt ctaaaaaacg
      181 tcttaaagat tttcgcaata ggataacttt tatgcaaagt aattttagtg aagttttaga
      241 aaaaatttca cataaagaag aattaagagg tattttagca gacattggag tttcttcatt
      301 tcagcttgat aataacgaaa gaggttttag tgtaaattct gactttttgg atatgagaat
      361 gaatcaaaac tccaaaatat cagcttatga gattattaat acttatacaa aagagcaatt
      421 aacttccatt tttaaagatt atggagaatt acatgatgca cattttattg ctgaaaaaat
      481 ttgcctagaa agaagtaaaa atccaatcaa aagcgccaaa gagctttatc aaatcatagg
      541 aaaaggtaaa caaaatcata gaaaaatttc caaagctact ttagcatttc aagccattag
      601 aatagaagta aatcaagaac ttaaagtgct taaagatttt cttgaacatt tagaaaattt
      661 aaaaccaaaa aattgcattt tagctatcat tagctttcat tctttagaag atagaatagt
      721 aaaacaattt ttcaaaaaat ggtcaaaaaa ctgcatttgt aatgaaaaaa taatgcgttg
      781 cgaatgtgga aataaccata gcctaggaca aataataact aaaaaagcta taagtgcgag
      841 caaggaagaa cttttaaaaa attctcgctc tagttgtgct aaaatgcggg ctttttattt
      901 taataatttg gacaataaat aatgctagaa gatgatttta taaaagaacg ccaaaacata
      961 cgccaaaaaa tgctgaaatt ttctcgcgcc ataaatcaag gcaaaccgct tgatgatgat
     1021 ttaagagatg aaatttctag cgatgatatt ttaagacgtc gttttaaaaa aaagactcct
     1081 aataaattct tagaagaact cgatgaagag tatga
//
LOCUS       DAPIWQ010000223         1115 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.225, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000223 DAPIWQ010000000
VERSION     DAPIWQ010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1115)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1115)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.225"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..634)
                     /gene="legH"
                     /locus_tag="RJ267_001795"
     CDS             complement(<1..634)
                     /gene="legH"
                     /locus_tag="RJ267_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase LegH"
                     /protein_id="HDV7389619.1"
                     /translation="MKYLLEFENKKYSTYDFIETFYKLGLQKGDTLCVHTELFNFGFP
                     LLSRNEFLQTILDCFFEVIGKEGTLIMPTFTYSFCKNEVYDKINSKTKMGALNEYFRK
                     QTGVKRTNDPIFSFAIKGAKEELFLKDTTSCFGENCVYEVLTKENGKYMTFGGQGHTL
                     THYAEEQFNVFYRYHKIFSGILIDENNISYNKTISYYVRKLDISSEPNLIN"
     gene            complement(655..>1115)
                     /locus_tag="RJ267_001796"
     CDS             complement(655..>1115)
                     /locus_tag="RJ267_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminoglycoside N(3)-acetyltransferase"
                     /protein_id="HDV7389620.1"
                     /translation="DPIFSFAVKGAKADIFLKENSSCFGKDSVYEILTREGGKFMLLG
                     LNYGHALTHYAEERNTSFCRYFKEFKGFVIDELGQKREKRINYYVRDLEKAYVCSLDK
                     INEIVRQTRYYKSIKFAGDFLESYDAKEYVKAIGNALKQDKFAIYEKLLL"
BASE COUNT          347 a          197 c          148 g          423 t
ORIGIN      
        1 tgttaattaa attgggttca gaagatatgt caagttttct aacataataa ctaatggttt
       61 tattgtatga tatattgttt tcatcaatta aaattccaga gaaaatttta tgatatctgt
      121 aaaatacatt aaattgttct tctgcataat gtgttagtgt gtgtccttgg cctccaaatg
      181 tcatatattt tccattctct ttggttaaaa cctcataaac acaattttcc ccaaaacaac
      241 ttgttgtatc ttttaaaaat aattcttctt ttgctccttt tatagcaaaa gaaaatatag
      301 gatcgtttgt gcgttttact cctgtttgtt tgcgaaaata ttcatttaat gctcccattt
      361 ttgttttgga atttattttg tcataaactt catttttgca aaaactataa gtaaaggttg
      421 gcatgatcaa agtgccttct ttgcctataa cttcaaaaaa acaatctaat atagtctgta
      481 aaaattcatt tctagaaagc aagggaaaac cgaaattaaa aagttcagta tgcacacaca
      541 aggtatcgcc tttttgtagt cctagtttgt aaaaagtttc tatgaagtcg taagtggagt
      601 attttttatt ttcaaattca agtaaatatt tcataaacta cctttaaatg tttttcataa
      661 aagaagcttt tcatatatgg caaatttatc ctgcttaagg gcgttgccta tggctttgac
      721 atattcttta gcatcatagc tttctagaaa atctcctgca aattttatgc ttttgtaata
      781 ccttgtttgc cgcacgattt catttatctt atcaaggctg catacatagg ctttttccaa
      841 gtctcttaca taataattta tccttttttc tcttttttgt cctagctcgt caatcacaaa
      901 gcccttaaat tccttaaaat acctgcaaaa gctggtattt ctctcttcag cataatgcgt
      961 tagggcgtgt ccataattca agcctaaaag cataaatttc ccaccttccc tagttaaaat
     1021 ttcatataca ctatcctttc caaaacagct tgagttttct tttaaaaaaa tatccgcttt
     1081 agcacccttc acagcaaagg aaaaaatagg gtcgc
//
LOCUS       DAPIWQ010000224         1112 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.226, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000224 DAPIWQ010000000
VERSION     DAPIWQ010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1112)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1112)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1112
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.226"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..463)
                     /locus_tag="RJ267_001797"
     CDS             complement(<1..463)
                     /locus_tag="RJ267_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2,3 sialyltransferase"
                     /protein_id="HDV7389621.1"
                     /translation="MSMNINALVCGNGPSLKNIDYKRLPKQFDVFRCNQFYFEDRYFV
                     GKDVKYVFFNPFVFFEQYYTSKKLIQNEEYNIENIVCSTINLEYIDGFQFVDNFELYF
                     SDAFLGHEIIKKLKDFFAYIKYNEIYNRQRITSGVYMCATAVALGYKSIYIS"
     gene            518..1112
                     /gene="wlaN"
                     /locus_tag="RJ267_001798"
                     /pseudo
     CDS             518..1112
                     /gene="wlaN"
                     /locus_tag="RJ267_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344532.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,3 galactosyltransferase"
BASE COUNT          461 a          144 c          134 g          373 t
ORIGIN      
        1 cacttatata tatactttta tatcccagag ccacagctgt agcacacata taaactccac
       61 tagtaattct ttgcctattg tatatttcat tatatttaat ataggcaaaa aaatctttaa
      121 gcttttttat aatctcatga cctaaaaaag catcactaaa gtataattca aaattatcaa
      181 caaattgaaa tccatctatg tattctaaat taatagtaga acaaactata ttttctatgt
      241 tatattcttc gttttgtata agttttttac tagtatagta ttgttcaaaa aacacaaaag
      301 gattaaaaaa aacatatttt acatctttac ccacaaaata tctatcttca aaataaaact
      361 gattgcatct aaatacatca aattgttttg gtaacctttt ataatctata ttttttaaac
      421 taggtccatt accgcatacc aaagcattaa tattcatact cattttatta ccttaaattt
      481 atagtataat tatatcaaaa aaaaataaag agctaaaatg agtcaaattt ccatcatact
      541 accaacttat aatgtggaaa aatatattgc tagagcatta gaaagttgca ttaaccaaac
      601 ttttaaagat atagaaatca ttgtagtaga tgattgtggt aatgataaaa gtatagatat
      661 agctaaagag tatgctagta aagatgatag aataaaaatc atacataatg aagagaattt
      721 aaagctttta agagcaagat atgaaggtgc taaagtagca acttcacctt atatcatgtt
      781 tttagattct gatgattatt tagaacttaa tgcttgcgaa gaatgtatta aaattttgga
      841 tatgggtggg ggggggtaaa attgatttgt tgtgttttga agcttttatt accaatgcaa
      901 aaaaatcaat aaaaaaatta aatataaaac aaggaaaata caacaacaaa gaatttacaa
      961 tgcaaatact taaaactaaa aatccatttt ggacaatgtg ggctaaaata atcaaaaaag
     1021 atatttattt aaaagccttc aacatgttaa atctcaaaaa agaaatcaaa ataaatatgg
     1081 cagaagatgc cttattatat tatcctttga ca
//
LOCUS       DAPIWQ010000225         1103 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.227, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000225 DAPIWQ010000000
VERSION     DAPIWQ010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1103)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1103)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.227"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            1..>1103
                     /locus_tag="RJ267_001799"
     CDS             1..>1103
                     /locus_tag="RJ267_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HDV7389622.1"
                     /translation="MNYYQELKKYLNNNLFTSYSLEIDFPKIYNFNANQKAFRDILTK
                     ITKIYNKNKFIKQNEHQFEDEFISKVLEILGWCFVRQDEKIIQGKLEKPDFLLFSNDK
                     LKSKYENLDKETKKSSNDFTIILESKAYNIEIDNKKVKDNPHFQILRYLGNLKKNYGF
                     LTNGRFWRFYDNSILNSNKVFYEINLEKIIEDQNIEAFAYFYSVFSAFNFTEKEDHLE
                     ITLQNNKLSKIKIEDDLKSIIYGTNGNESLFEFIGSRIYNKTKADLKLIYENSLYFIF
                     RLLFIAYFEDKFEIILEKHKYFKSKISLRTLLENLQEDENSSGGFGELENIFNIYNKG
                     KGNFDMPVFNGGLFDESKTALLSTPKIFNDKDL"
BASE COUNT          471 a          139 c          139 g          354 t
ORIGIN      
        1 atgaattact atcaagaact taaaaaatac ctcaacaata atctttttac aagctattct
       61 ttagaaattg actttcctaa gatttataat ttcaacgcaa atcaaaaagc ctttagagat
      121 attttaacta aaattacaaa aatttacaac aaaaataaat ttataaaaca aaacgaacat
      181 caatttgaag atgaatttat atcaaaagta ttagaaattt tagggtggtg ctttgtaaga
      241 caagatgaaa aaatcataca aggaaaattg gaaaaacctg attttctact ttttagcaat
      301 gacaaattaa aatcaaaata cgaaaattta gacaaagaaa caaaaaaatc aagcaatgat
      361 ttcacaatca ttttagagtc aaaagcttat aatatagaaa tagacaataa aaaagtaaaa
      421 gacaaccctc actttcaaat tctaagatat ctaggcaatc ttaagaaaaa ttatggtttt
      481 ttaaccaatg gtagattttg gcgtttttat gataattcta tactgaattc aaacaaagtt
      541 ttttacgaaa tcaatctaga aaaaatcatt gaagatcaaa atattgaagc ttttgcgtat
      601 ttttatagtg tgtttagcgc ttttaatttc acagaaaaag aagatcattt agaaataact
      661 ctacaaaaca ataaactttc aaaaatcaaa atagaagatg atttaaaatc tatcatttac
      721 ggaaccaatg gaaatgaatc tttatttgaa ttcataggct ctagaattta caataaaaca
      781 aaggcggatt taaaactaat ctatgaaaat tctttatatt ttatctttag gcttttattt
      841 attgcttatt ttgaagataa atttgaaatt atactagaaa aacataagta ttttaaaagt
      901 aaaatcagtc ttagaacctt acttgaaaat ttacaagaag atgaaaactc aagtggtggc
      961 tttggagaac ttgaaaatat tttcaacatt tacaacaaag gcaaaggcaa ttttgacatg
     1021 cctgttttta atggcggttt gtttgatgag agcaaaaccg ctcttttaag cacgccaaaa
     1081 atctttaacg ataaagattt aaa
//
LOCUS       DAPIWQ010000226         1095 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.228, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000226 DAPIWQ010000000
VERSION     DAPIWQ010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1095)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1095)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1095
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.228"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            28..1065
                     /locus_tag="RJ267_001800"
     CDS             28..1065
                     /locus_tag="RJ267_001800"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HDV7389623.1"
                     /translation="MKKLFICCLFIGVCMKKAKSRIAILGTGGTIAGFIDSTIATTGY
                     TAGAIDIDVLIKAVPQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLFAEGIDG
                     VVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALVANKE
                     AKNKGVMVAINDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVTKAHT
                     KNAPFDVSKLTSLPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKD
                     VLKELLKKGLKVVVSSRVVAGCVAVSDSDEKLGFISAEDLNPQKARVLLILALTKTSD
                     PKKIQEYFLKY"
BASE COUNT          386 a          130 c          227 g          352 t
ORIGIN      
        1 taacattaaa aaattaatat acaagagatt aaaaaattat ttatatgttg tctttttata
       61 ggagtatgta tgaaaaaagc taaatcaagg attgctattt taggaacagg cggaacgata
      121 gcaggcttca ttgatagcac tattgctaca acaggatata cggccggagc cattgatata
      181 gatgtattaa ttaaagcagt tccgcaaatt agagatttag cagatattag ttgggagcaa
      241 atagcaaata ttgatagttc aaatatgtgt gatgaaattt ggttaaggct tgctaaaaaa
      301 attgctaagc tttttgctga ggggatagac ggtgtggtga taactcatgg tactgatact
      361 atggaagaaa ctgcttattt tttaaattta accattaaaa gtgataagcc cgtagttcta
      421 gttggcgcta tgcgtccatc aactgctata agtgcggatg gtccgaaaaa tctttataat
      481 gcagtggcat tagttgccaa taaagaagct aagaataagg gtgttatggt agctataaat
      541 gataaaattt taagcgctag aggcgtagta aaaactcata gtttaaatgt tgatgctttc
      601 tcttctcctg attttgggga tttgggttat atagtagatg gtaaagtctt tttctataat
      661 aatgttacta aagctcacac aaaaaacgct ccttttgatg taagcaaact cacaagtttg
      721 ccaaaagtag atattcttta tagctattca aatgatggta gtggtgtcgc tgcaaaagct
      781 ttatttgaac atggaactaa gggcatagtt gttgcaggaa gtggagcagg aagtatacac
      841 aaaaatcaaa aagatgtttt aaaagagctt ttaaaaaaag ggcttaaggt tgttgtaagt
      901 tcaagggttg tagcaggttg tgttgctgtg agtgattcag atgaaaaatt aggttttatt
      961 agtgctgaag atttaaatcc tcaaaaagca agagttttgc ttatattagc acttacaaaa
     1021 acaagtgatc ctaaaaaaat tcaagagtat tttttaaaat attaaaattt tttaaatatt
     1081 tctaaactta gggaa
//
LOCUS       DAPIWQ010000227         1071 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.229, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000227 DAPIWQ010000000
VERSION     DAPIWQ010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1071)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1071)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1071
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.229"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            33..632
                     /locus_tag="RJ267_001801"
     CDS             33..632
                     /locus_tag="RJ267_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HDV7389624.1"
                     /translation="MLPKWDNSYSVHNAKIDEQHKKLFKLAAKVEVVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKDIKSTNDLKE
                     KLYIVAKKWLLEHILYEDMKVEKWRSSSLSTDDGGDVSFEAAEDEDNEHPQFYLYTCN
                     CPGKIHDVPYSIHQKIELQGRKFTCKTCKQAIKFYKKYS"
     gene            643..891
                     /locus_tag="RJ267_001802"
     CDS             643..891
                     /locus_tag="RJ267_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HDV7389625.1"
                     /translation="MKRNVKTYSFRMPLELKERLDNLSKNLSKPKSTIVKEAIEAYLN
                     EVEDFSFAVNALEELKDGDYQKASKKIDKIVKNLKQTK"
     gene            complement(982..1056)
                     /locus_tag="RJ267_001803"
     tRNA            complement(982..1056)
                     /locus_tag="RJ267_001803"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1022..1024),aa:Asn,seq:gtt)
BASE COUNT          439 a          142 c          169 g          321 t
ORIGIN      
        1 catacaaata aatttttcct taaggagtta aaatgcttcc aaaatgggat aacagctata
       61 gtgtgcacaa tgctaaaatt gatgagcagc ataaaaagct ttttaaactt gctgcaaaag
      121 ttgaagttgt atcagataga tctgtaagta aaaatgaagt caaagaactt ttggctgaat
      181 tttttaatta tatgaaagat cactttaatg atgaagaaaa atacatgcag ctaataggct
      241 atccaaattt agaagaacat cgaaaaatac ataaagaaat catccaaacc atgattaatt
      301 taatcaaaga tatcaaatca accaatgatc ttaaagaaaa actttatata gtggctaaaa
      361 agtggctttt agaacacata ctatatgaag acatgaaagt tgaaaaatgg agaagttctt
      421 ctttgtctac agatgatggt ggcgatgtta gctttgaagc agcagaagat gaagataatg
      481 agcatccaca attttatctt tatacctgta attgtcctgg taaaattcac gatgttcctt
      541 atagcattca tcaaaaaata gaattacaag gtcgtaaatt tacttgtaaa acttgtaaac
      601 aagctataaa attttacaaa aaatattctt aaggaggata aaatgaaacg caatgtaaaa
      661 acttattctt ttagaatgcc tttagagctt aaggagcgtt tggataattt aagtaaaaat
      721 ctttctaaac caaaatcaac catagtaaaa gaagccatag aggcttatct taatgaagtt
      781 gaagattttt cttttgctgt taatgcccta gaagaactta aagatgggga ttatcaaaag
      841 gcaagtaaaa aaatagataa aattgtcaaa aatcttaaac aaacaaaata aaaaacttta
      901 tcacaatttt tttgtgataa agacttatta attttttata ttaaaataca tttatgaata
      961 ttaaaaatgg agttaaaaaa gtggctccgg atgtaggatt cgaacctacg accaatcggt
     1021 taacagccga ctactctacc gctgagctaa tccggaatat ttaaaagtaa a
//
LOCUS       DAPIWQ010000228         1055 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.230, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000228 DAPIWQ010000000
VERSION     DAPIWQ010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1055)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1055)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1055
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.230"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..235
                     /locus_tag="RJ267_001804"
     CDS             <1..235
                     /locus_tag="RJ267_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389626.1"
                     /translation="DEKSYLIVSPGKSKDEITQLVNTNLKTIENFRFIYKQDIITPKI
                     HVAYLDKQSKPSINILDELIKQIAAVNEQHNES"
     gene            201..>1055
                     /locus_tag="RJ267_001805"
     CDS             201..>1055
                     /locus_tag="RJ267_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HDV7389627.1"
                     /translation="MQRLMNNIMKVENFLAQKSINYDKIDRFLMFRMYEKYKKYFKNI
                     PIIQLIGTNGKGSTGRYLTQLLENLNYKIGHYTSPHIFSFNERFYLDGKIANDEELEQ
                     AHIRLEEIFKQDLQKLSYFEYATFLAMILFQKCDFIVLEAGVGGEYDATSIFERRMSI
                     FTRIGFDHIQILGNSLEDIARTKLKVMAPIALISDEQEQNVLNLAKKIAFLKKANLQV
                     SSLNPFLKEKFEIYCKKFVLPYFLKHNLKLALKACEILTSQEKTLEALKKLQELNLQG
                     RCQEISPNF"
BASE COUNT          415 a          117 c          166 g          357 t
ORIGIN      
        1 agatgaaaag agttatttga ttgtttcgcc aggaaaaagc aaagatgaaa ttacacagct
       61 tgtaaataca aatcttaaaa ctatagaaaa ttttagattt atttataagc aagatattat
      121 aactcctaaa attcacgtgg cttatcttga taagcaaagt aagccaagta ttaatatttt
      181 agatgagtta ataaagcaaa ttgcagcggt taatgaacaa cataatgaaa gttgagaatt
      241 ttttagctca aaaaagtata aattacgata aaattgatcg ttttttgatg tttagaatgt
      301 atgaaaaata taagaaatat tttaaaaata ttcctataat ccaacttata ggcacaaatg
      361 gtaaaggtag cacgggtaga tatttaaccc aacttttaga aaatttaaat tataaaatag
      421 ggcattatac tagcccgcac attttcagtt ttaatgaaag attttatctt gatggtaaga
      481 ttgcgaatga tgaagaatta gaacaagctc atataagact tgaagaaatt tttaaacaag
      541 acttgcaaaa attaagttat ttcgaatatg ctactttttt agctatgatt ttatttcaaa
      601 aatgcgattt cattgtttta gaagcaggag tgggtggaga atatgatgct acttctattt
      661 ttgaaagaag aatgagtatt tttacaagaa ttggatttga ccatattcaa attttgggca
      721 attctttaga agatattgca agaaccaagc ttaaagttat ggcacctata gcacttataa
      781 gtgatgagca agagcaaaat gttttaaatt tagcaaaaaa aattgctttt ttaaaaaaag
      841 ctaatttgca agtttcctcc ttaaatcctt ttttgaaaga aaaatttgag atttattgta
      901 aaaagtttgt tttaccttat tttttaaagc ataatttaaa gcttgcatta aaggcttgtg
      961 aaattttaac ttcgcaagaa aaaaccttag aagctttaaa aaagttacaa gagttaaatt
     1021 tacaaggaag atgccaagaa atttctccaa atttt
//
LOCUS       DAPIWQ010000229         1009 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.231, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000229 DAPIWQ010000000
VERSION     DAPIWQ010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1009)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1009)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1009
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.231"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..638
                     /locus_tag="RJ267_001806"
     CDS             <1..638
                     /locus_tag="RJ267_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDV7389628.1"
                     /translation="ELKYELLLDFLQQEKITKIFLDASIKLQFNGIDYCDIFYFQKGI
                     LPHSWFFAKKLDLGYKQDLNLSEQKLYQVKEYFLTLKEDEKKVILDFLSQNNDDKYDL
                     YKMLYYLINELYSFEHDGIFYQIIIDKEKMLIAQKHDKSFYPLRSFVYKPYLHELKSI
                     RPFSFLMKILGLEYLGAMISHTKFYRLARKLFFNPKGFFEDFNYKIMKGKI"
     gene            635..>1009
                     /locus_tag="RJ267_001807"
     CDS             635..>1009
                     /locus_tag="RJ267_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HDV7389629.1"
                     /translation="MKIVIVGIGYVGLANAILFSKNNENEVVLLDIDENKIQSINNHK
                     SPIKDKLIEKFFVQNISKLHATSNIKEAYFNADFAVIATPTDYDEQLNFFDTRSIENV
                     LKDIKNINSKINVIIKSTVPIGY"
BASE COUNT          386 a           94 c          152 g          377 t
ORIGIN      
        1 aagagttaaa atatgaactt ttgttggatt ttttacaaca agaaaaaatc actaaaatat
       61 ttttggatgc aagtataaaa ctacaattta atggtataga ttattgtgat attttttatt
      121 ttcaaaaagg aattttacct cattcttggt tttttgcaaa aaaattagat ttaggttata
      181 aacaagattt aaatttaagc gagcaaaaac tttatcaagt gaaagaatat ttcttaactt
      241 taaaggagga tgaaaaaaaa gttatcttgg attttttaag ccaaaacaat gatgataagt
      301 atgatttgta taaaatgctt tattatttga ttaacgagct ttatagtttt gagcatgatg
      361 ggatttttta tcaaatcatc attgataaag aaaaaatgct gatagcacaa aaacatgata
      421 aaagctttta tcctttaaga tcttttgttt ataaacctta tttgcatgag cttaagagta
      481 taagaccttt ttcatttttg atgaaaattt taggtttaga gtatcttggt gctatgattt
      541 cacatactaa attttatcgc ttggcaagaa aattgttttt taatcctaag ggattttttg
      601 aggattttaa ttataaaata atgaaaggta aaatatgaaa atagtcattg ttggaattgg
      661 ttatgttggg cttgcaaatg ctatactctt ttcaaaaaat aatgaaaatg aggttgtatt
      721 gttagatatt gatgaaaata aaatccaaag tattaataat cataagtctc ctattaaaga
      781 taaattaatt gaaaagttct ttgtgcaaaa tataagtaaa ttacatgcta cttcaaatat
      841 caaagaggct tattttaatg cagattttgc agttattgct actccaactg attatgatga
      901 acagcttaat ttttttgata caagaagtat agagaatgtt ttaaaagata taaaaaatat
      961 aaattctaag atcaatgtta ttattaaaag cactgtgcct ataggatat
//
LOCUS       DAPIWQ010000230         1005 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.232, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000230 DAPIWQ010000000
VERSION     DAPIWQ010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1005)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.232"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..>1005
                     /locus_tag="RJ267_001808"
     CDS             <1..>1005
                     /locus_tag="RJ267_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HDV7389630.1"
                     /translation="DTPGLDDVVVQREIVTNEYLRESDFLIHLMNASQSLTQKDADFL
                     VHCLLNSRLSKFLIVLTKADLLSKKDLEEVIVYTKESLKSRLVDLDENLVEKIDFLCV
                     SAKMASDFYKGLASKESLQKSGMQEFENYLFNELYAGEKSKIALRAYKKELHLELKNI
                     LSEYEMQNRLIKENKQGVSEENQKLLLELQKQNTLLKEAQDEISNSIAKLKNIDSGID
                     NLVLLLAKKLKERLIDEFKYLKNNAQKLNLSRILNIVDITTKDGINDILREIKFENIK
                     KIEELKTNLSLKYDFLKDDFDNGFEGFKDGISKNIDSIFQSEKFALLRLKIEKLSNLK
                     S"
BASE COUNT          407 a           98 c          173 g          327 t
ORIGIN      
        1 gatactccag ggcttgatga tgttgtagtt caaagagaaa ttgttacaaa tgagtatctt
       61 agagaaagtg attttttaat tcatttaatg aatgcttctc aaagcttgac tcaaaaagat
      121 gcagactttt tggtgcattg tcttttaaat tcaaggctga gtaagttttt aattgtttta
      181 actaaagcgg atttgttaag caaaaaggat ttagaagaag tcattgttta taccaaggaa
      241 agcttaaaat caagacttgt ggatttagat gaaaatttag tggaaaagat tgatttttta
      301 tgtgtgagcg ctaaaatggc aagtgatttt tataaaggtt tagcgtccaa ggaaagcttg
      361 caaaaaagtg gtatgcaaga atttgaaaac tatcttttta acgagcttta tgcaggagaa
      421 aaaagtaaga ttgccttaag agcttacaaa aaagaattgc atttagagct taaaaatatt
      481 ctaagcgaat atgaaatgca aaatcgtctt attaaggaga ataaacaagg tgtaagtgaa
      541 gaaaatcaaa agcttttact tgaacttcaa aagcaaaaca ccttattaaa agaagcacaa
      601 gatgaaattt caaattccat tgcaaaactt aaaaatatag atagtggcat agataatctt
      661 gttttacttt tggctaaaaa attaaaagaa cgcttgatag atgagtttaa atatttgaaa
      721 aataatgcac aaaagcttaa tctttctcgt attttaaata tagttgatat taccacaaaa
      781 gatgggatta atgatatttt aagagaaatt aaatttgaaa atattaaaaa aatcgaggag
      841 cttaaaacaa atttatcttt aaaatatgat tttttaaaag atgattttga taatggtttt
      901 gaaggtttta aagatggaat ttcaaaaaat atagatagta tttttcaaag cgaaaaattt
      961 gcacttttaa gattgaaaat tgaaaaatta agcaatctaa aatca
//
LOCUS       DAPIWQ010000231          977 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.234, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000231 DAPIWQ010000000
VERSION     DAPIWQ010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 977)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 977)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..977
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.234"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..350
                     /locus_tag="RJ267_001809"
     CDS             <1..350
                     /locus_tag="RJ267_001809"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HDV7389631.1"
                     /translation="NEEEKKVILNKGTEAPFSGKYNDFYEKGIYQCKQCGASLYKSED
                     KFKSGCGWPSFDDEIKGAVKRIPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKNVRHC
                     VNSISLEFVKTKD"
     gene            365..>977
                     /locus_tag="RJ267_001810"
     CDS             365..>977
                     /locus_tag="RJ267_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HDV7389632.1"
                     /translation="MGSELYLMFFAAITLLAILNPFGNLTQFLAMSDGLPLMLRKKLF
                     RTILYTAFTIVLVFLLSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTKIATK
                     DFSSYQDMDDKEILRQSLIPMAFPMLVGPGTLASVIVIAEDGGLDVALGGVMIAFIFM
                     FILFHFAATIEKIVGKLILHVFSRIAQVFIVAMGFKMIIVGLKD"
BASE COUNT          300 a          100 c          195 g          382 t
ORIGIN      
        1 taaatgaaga agaaaaaaaa gtaattttaa ataaaggaac agaagctcct tttagtggga
       61 aatataatga tttttatgaa aaaggaatct atcaatgcaa gcaatgtgga gcttcgcttt
      121 ataaatccga agataaattt aaatcaggtt gtggatggcc tagctttgat gatgaaataa
      181 aaggggctgt taaaagaatt cctgataaag atgggattag aaccgagatt gtatgtgcaa
      241 attgcaatgg acatttaggt catgtttttg aaggagaagg attttctgct aaaaatgtaa
      301 gacattgtgt aaattctatt tctttggaat ttgtaaaaac taaggattga tagtgttttc
      361 tagtatgggt tctgagcttt atttgatgtt ttttgctgca attactttac ttgctatatt
      421 aaatcctttt ggtaatttaa ctcaattttt ggctatgagt gatggattgc ctttaatgct
      481 tcgaaaaaaa ctttttagaa ctattctcta tacagctttt actatagttt tggtgttttt
      541 attatcagga cctttattta tgaactatat ttttagagtt tcattggatg atttaagggt
      601 ttctggtggt ttggttctta ttataatggc tattaaaaat ttactttttt caacaaaaat
      661 tgcaactaag gattttagtt cttatcaaga tatggatgat aaggaaattt taagacagag
      721 tttaatacct atggcatttc ctatgcttgt tgggcctgga actttagcta gcgttattgt
      781 tatagccgaa gatggtgggc ttgatgttgc tcttggtgga gtaatgatag cttttatttt
      841 tatgtttata ctttttcatt ttgcagctac tatagaaaaa atagttggaa aattgatttt
      901 acatgttttt tctcgtatag cacaagtatt tattgttgct atggggttta agatgattat
      961 tgtaggttta aaggata
//
LOCUS       DAPIWQ010000232          973 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.235, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000232 DAPIWQ010000000
VERSION     DAPIWQ010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 973)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 973)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..973
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.235"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(34..>973)
                     /locus_tag="RJ267_001811"
     CDS             complement(34..>973)
                     /locus_tag="RJ267_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDV7389633.1"
                     /translation="EIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAVAVIC
                     ILVLLYIYIFKKLKPLKRLKKQIDKFAQGKLGDIEDVSTGVDEISQVSEAFYQAIVQI
                     RKLNQSRQFFLRNIMHELKTPITKGLLTLEMIEDNKYKERLNGVFTRLEILINEFAAI
                     EQITSGAAFINRKKYNILDVLDEAKEIAMRDDSNIRIFMEESFFVNVDFKLFTTAIKN
                     MIDNGIKHSEDGFVQIDIIDDYICFKNRGPELNNTLEYYTQAFTQGSKQKSSFGLGLY
                     IVNTILETHGMKLDYLYEDGVNLFYFRNLKSVIVKE"
BASE COUNT          358 a          162 c           94 g          359 t
ORIGIN      
        1 acaaaaatgc attttttatg taaaaaaatt aatttactcc ttaacaataa cactttttaa
       61 atttctaaaa taaaacaaat ttaccccatc ttcatataaa taatcaagct tcattccatg
      121 tgtttctaaa atagtattta caatataaag ccctaatcca aaacttgatt tttgttttga
      181 tccttgagta aaagcttgag tatagtattc taaagtattg ttaagctcag gaccacgatt
      241 tttaaaacaa atataatcat ctataatatc aatttgcaca aacccatctt cagaatgttt
      301 aataccatta tctatcatat ttttaatcgc cgtagtaaaa agtttaaaat ccacatttac
      361 aaaaaaactt tcttccataa aaatacgtat attgctatca tctcgcattg caatttcttt
      421 ggcttcatct aaaacatcta aaatattgta tttttttcta tttataaaag cagcccctga
      481 agtaatttgc tcaatagcag caaattcatt aattaaaatt tcaagtctag taaaaacccc
      541 atttaagcgc tctttatatt tattatcttc tatcatttct aaagttaaga gccctttagt
      601 aataggagtt ttgagttcat gcataatatt tcttaaaaaa aactgacgag attggtttaa
      661 ctttcgaatt tgaacaatag cttgataaaa agcttcactt acttgtgaaa tttcatccac
      721 cccagtgctt acatcttcta tatcaccaag ctttccttgg gcaaatttat caatttgttt
      781 tttaagtctt ttaagtggtt ttaatttttt aaatatataa atataaagca atacaagaat
      841 acaaatcaca gctacagcta tagctttgat aataaaatac ctataggttt gataatcttg
      901 atccttataa agataaacct ttccatcata aataatattt aaatacacct gtctattata
      961 agaaataatc tcg
//
LOCUS       DAPIWQ010000233          936 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.236, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000233 DAPIWQ010000000
VERSION     DAPIWQ010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 936)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 936)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..936
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.236"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            44..936
                     /locus_tag="RJ267_001812"
                     /pseudo
     CDS             44..936
                     /locus_tag="RJ267_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516966.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT          313 a          126 c          148 g          349 t
ORIGIN      
        1 agttaaaata ttttaagcat aaaaaaaaga aaggtattgg gaagtgacta aacaagaaat
       61 acaaaaactc gatacaaatt tcctaggtca tcgcaagccc ttattctctt tatcaatggt
      121 agaactttgg gaaagatttg ctttttatgg catacgatct ttacttgtgc ttttcatggc
      181 aacaaccata agcaaaggta gacttggaat aagcactgaa tacgcctcgg caatttatgg
      241 catttttgca ggatgcttgt atttagcagc acttcctgga ggctggatta ctgataatta
      301 tttagggcaa aaaaaggctt tatttttagg ttcttttatt atagctttag gacatattag
      361 catagcctta tctattttaa gcacacctat gtttttccta gggcttactt ttatcgttat
      421 tggtactgga ttttttaaaa ctaacgcttc tgtaacagtt ggaatgttgt ataaacaaaa
      481 tgatacaaga tgcgatactg gctatacgat tttttatata ggaattaaca ttggagcatt
      541 cattgctcct cttatatgtg gttttgttca agcaaaatgg aattatcatt taggatttgt
      601 cataggaggt ttaggtatgc taatctcttt gcttatttta tattttaaag ctgcccttga
      661 gcttgaagaa tttcataaaa attgaacctt aaagcaaaac tgggaataac catttaaaaa
      721 agtaaaaaat ttaactctta tactaagtat aagcttgtta agtattattg gattttttct
      781 aatgtttatt aatcttgtaa atattaatcc catataatac tatcaaaaaa acttctaatt
      841 gtaattttac tatgtttggt aatttatttc atatatcttt ttgtttttaa agctttaaat
      901 aaaagagaaa aacagcaatt aacaatttta attgtt
//
LOCUS       DAPIWQ010000234          935 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.237, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000234 DAPIWQ010000000
VERSION     DAPIWQ010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 935)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 935)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..935
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.237"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            335..598
                     /locus_tag="RJ267_001813"
     CDS             335..598
                     /locus_tag="RJ267_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014769654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389634.1"
                     /translation="MLLEGFSNATKEDRNLNFNHLLFAALLVSFALFLFAPQIYIRNQ
                     IYYLSREIATLRTEESVLNEENKDLKRRLENMRFQNQILDYLE"
     gene            complement(586..>935)
                     /locus_tag="RJ267_001814"
     CDS             complement(586..>935)
                     /locus_tag="RJ267_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389635.1"
                     /translation="ILNSYIYYGVFCAVVLLPLLLITHYFLTKLDFHISIVSAVMVTA
                     CVFIGYDIFKVYTRKIISKKIIQKAWALHFPYFAYEKYSTMAGEFYKEALKEEIPKAN
                     LEQYVLDKIIHSK"
BASE COUNT          432 a          142 c          102 g          259 t
ORIGIN      
        1 tttatttagc agaaaaaaag caaacgaaat aaaaaatatc caaaccaaaa cacaaattca
       61 aacaaaaagc aatcaagcta ccactcaaac aaaacaagaa aaaaaggaac ttacaaattc
      121 tatagaaaaa attcaaaaaa cagaaactaa aatacaaaaa cctctaatta tagaaaaaaa
      181 actagatgtt aaaaatcaac ctaatatcaa gaaaagttta gaaaatttac aaaaaaaaat
      241 aacaccacaa gaaaataaac aagaacttcc aaaaccatct aatcaagctc aagaaaaaca
      301 acaaaatgat gaagatgctc aaaaggcaaa aaatatttta ctagaaggct tctctaatgc
      361 taccaaagaa gatagaaacc taaacttcaa tcatcttctt tttgcagctt tacttgttag
      421 ttttgcatta tttttatttg ccccacaaat ttatattaga aatcaaattt attatcttag
      481 tagagagatt gctacattaa gaacagaaga aagtgtttta aacgaggaaa ataaagactt
      541 aaaaagaaga cttgaaaata tgcgattcca aaatcaaatt ttagattatt tagaatgaat
      601 aatcttatct aaaacatact gctctaaatt tgcttttgga atttcttctt ttaaagcttc
      661 tttataaaat tcacccgcca ttgtagagta cttttcataa gcaaaataag gaaagtgtaa
      721 agcccaggct ttttgtatta ttttttttga gattattttg cgagtataaa ctttaaaaat
      781 atcatatcct ataaatacac aagcagtaac cataacagca ctcactatgc ttatatgaaa
      841 gtcaagtttt gttaaaaaat aatgagtaat taaaagcaat ggcaacaaaa ccacagcaca
      901 aaaaacacca taataaatat aagaatttag aattt
//
LOCUS       DAPIWQ010000235          928 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.238, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000235 DAPIWQ010000000
VERSION     DAPIWQ010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..928
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.238"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..578
                     /gene="trmD"
                     /locus_tag="RJ267_001815"
     CDS             <1..578
                     /gene="trmD"
                     /locus_tag="RJ267_001815"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HDV7389636.1"
                     /translation="NSYHKVDDYKIGGGAGLLMQAEPMYEVLRSIQEKKENPYFIFLN
                     PSGKTFNQKDAKRLSKKEHIVFVCGRYEGIDERVLEIFANEVFSIGDFILTGGELPAL
                     VMCDAILRNVNGVLGNMESLEEESFENNLLEAPAFSKPFIFEKKNKKFYTPSEFLKGN
                     HARIASLKTTLASCKTKFFRPDLFLEHERKK"
     gene            589..>928
                     /gene="rplS"
                     /locus_tag="RJ267_001816"
     CDS             589..>928
                     /gene="rplS"
                     /locus_tag="RJ267_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HDV7389637.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPDFRAGDTLKLAIRIKEGDKTRIQN
                     FEGICIARRGNGVSETFIVRKIGANNVGVERIFPIYSESLESITVLRRGRVRRARLFY
                     LRDRRGKAARI"
BASE COUNT          330 a          107 c          193 g          298 t
ORIGIN      
        1 aaaattctta tcataaagtc gatgattata aaataggtgg tggagctgga cttttgatgc
       61 aagctgaacc tatgtatgag gtgctaagaa gtattcaaga aaaaaaagaa aatccctatt
      121 ttattttttt aaatccaagt ggtaaaacct ttaatcaaaa agacgccaaa cgcttaagta
      181 aaaaagaaca tatagttttt gtatgtgggc gctatgaagg tatagatgaa agagtgcttg
      241 aaatttttgc gaatgaagtt tttagtatag gggattttat tttaactgga ggagaattac
      301 ctgcgcttgt aatgtgtgat gcaattttaa gaaatgttaa cggggtttta ggaaatatgg
      361 aaagtttgga agaagaaagc tttgaaaata atttactcga agcgcctgct ttttcaaaac
      421 cttttatttt tgagaaaaaa aataaaaaat tttatactcc ttcagagttt ttaaagggta
      481 atcacgctag aattgcaagt ttaaaaacta ctttggcgtc ttgcaaaacg aaattttttc
      541 gtccagattt atttttagag catgaacgca aaaaataagg gattttttat gaaaaataaa
      601 tatatagaac aatttgaagc aaaacaaatt gaaggtaaaa atgttccaga ttttcgtgct
      661 ggtgatactt taaagcttgc aattcgcatc aaagaaggag ataaaacaag aatccaaaat
      721 tttgagggta tttgtattgc tagaagaggt aatggcgtaa gtgaaacttt tatcgtgcgt
      781 aaaattggcg ctaataatgt tggcgttgag agaatttttc ctatttatag tgaaagttta
      841 gaaagtatta ctgttttgcg tcgtggtcgt gtacgccgtg caagattatt ctacttaaga
      901 gatagacgcg gtaaagcagc gcgtatta
//
LOCUS       DAPIWQ010000236          876 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.239, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000236 DAPIWQ010000000
VERSION     DAPIWQ010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..876
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.239"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            334..807
                     /locus_tag="RJ267_001817"
     CDS             334..807
                     /locus_tag="RJ267_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389638.1"
                     /translation="MLDYEKFQTMSKEEYFKKYNVGIRFLFGCDINQKDEIEMISLRV
                     FLPKKYFQEYKNIDIFKTMDLFKKTPLFKELIEQSIKIDFEKREFVMPDFFIKHDIEI
                     IPYFTQGGEKEEELSKEKFFELLKQNKIKELNYLCFLFFGLFCEEEYEYFCKVKE"
BASE COUNT          352 a           78 c          140 g          306 t
ORIGIN      
        1 aattcaaata aattagaaac aaggttgtcc gagtttaatc agaataaaag gagaaaatta
       61 tgaataacaa aagaaaagtt agggaatttc tgtcttatac ggagaaatat ctgtcttatg
      121 tattatttat ttgtataggt tcttgtttcg ttgctttaat actaagtgcg agcattgata
      181 gtgattttta ctcacttttt attattttag ctttaggaac tacgatcagt cctcttattt
      241 gtatcgggtt ggttaaatta atagaaaaat taataaaaat aataaaaaaa taaaaacaat
      301 gaaaattgca taaaaaatag ggtgagaaca ataatgcttg attatgaaaa atttcaaaca
      361 atgagtaaag aagaatattt taaaaaatat aatgtcggaa ttaggttttt gtttgggtgc
      421 gatatcaatc aaaaagatga aattgaaatg ataagcctta gggttttttt gccaaagaag
      481 tattttcaag aatacaaaaa cattgatatt tttaaaacaa tggacttatt taaaaaaaca
      541 ccattattta aagaattaat agagcaaagc attaagattg attttgaaaa aagagaattt
      601 gtaatgcctg atttttttat taagcacgat atagaaatca ttccttattt tacgcaaggt
      661 ggcgaaaaag aagaagaatt aagcaaagag aaattttttg aacttttaaa acaaaacaag
      721 attaaagaat taaactattt atgctttttg ttttttggct tgttttgtga agaagaatat
      781 gagtattttt gcaaagtaaa ggagtaaaaa atgatttcag taacgctttt attttttctt
      841 tttggactaa acaaactttt gtttaatgct aaaaat
//
LOCUS       DAPIWQ010000237          825 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.240, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000237 DAPIWQ010000000
VERSION     DAPIWQ010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 825)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 825)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..825
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.240"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..254)
                     /locus_tag="RJ267_001818"
     CDS             complement(<1..254)
                     /locus_tag="RJ267_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HDV7389639.1"
                     /translation="MLTLENKFQSIATGPVAALESIKHLGTNGGGFFGTNSSMPFENP
                     TLLTNFLQILSMMLIPSACVVAFGLMVYHRKEIQGFALMG"
     gene            complement(276..374)
                     /locus_tag="RJ267_001819"
                     /pseudo
     CDS             complement(276..374)
                     /locus_tag="RJ267_001819"
                     /inference="COORDINATES: protein motif:HMM:NF015753.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
     gene            complement(332..556)
                     /locus_tag="RJ267_001820"
                     /pseudo
     CDS             complement(332..556)
                     /locus_tag="RJ267_001820"
                     /inference="COORDINATES: protein motif:HMM:NF015753.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
     gene            complement(587..>825)
                     /locus_tag="RJ267_001821"
     CDS             complement(587..>825)
                     /locus_tag="RJ267_001821"
                     /inference="COORDINATES: protein motif:HMM:NF015753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HDV7389640.1"
                     /translation="IIAFILALIFGNYLYKIASCKKTIFDFIFNPIDNLIYKICAIDR
                     KNMTWQKYSLHLIAFNALVAIFSFVIFYLQDKLF"
BASE COUNT          341 a          142 c          102 g          240 t
ORIGIN      
        1 tttcccataa gagcaaaacc ttgtatttct tttctatgat aaaccatcaa tccaaaagct
       61 acaacacagg cactaggaat aagcatcatg gataaaattt gcaaaaaatt tgtaagtaaa
      121 gtaggatttt caaaaggcat gcttgaatta gtaccaaaaa aaccaccccc atttgtccct
      181 aaatgtttta tagactcaag agctgcaaca ggacctgtgg caatgctttg aaatttattt
      241 tctaaagtaa gcacgctaaa atttgcgtga taattttaca ccacgccttc agagataaaa
      301 attacagcca aaataaaact taaaggcaac atcaaacgcg taataatacg cgtaaaatct
      361 tcataaaatt tcccatttgc atactacata aagcacgaca aaaagccata caagcagaat
      421 atccactcgc acttgaaaca aacatagcaa gcaaaatgcc tgtattttgc gaaagcaaac
      481 ttaaagcatt ctctccacta taatgctgaa ggtttgtatt tgtaataaaa ctaattacag
      541 tatttaaatt caaatcccct tatcatagaa tttatcgaat tgggatttaa aaaagtttat
      601 cttgtaaata aaaaatcacg aaagaaaaaa tagccactaa ggcattaaaa gcaattaaat
      661 gcaaagaata tttttgccaa gtcatatttt ttctatcaat tgcacaaatt ttataaatta
      721 agttatcaat tggattaaaa ataaaatcaa aaatagtttt tttacagctt gcaattttat
      781 aaagataatt tccaaaaatt aaagccaata taaaagctat aatca
//
LOCUS       DAPIWQ010000238          808 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.242, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000238 DAPIWQ010000000
VERSION     DAPIWQ010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 808)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 808)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.242"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..>808
                     /locus_tag="RJ267_001822"
     CDS             <1..>808
                     /locus_tag="RJ267_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3971 domain-containing protein"
                     /protein_id="HDV7389641.1"
                     /translation="LDYLQGFIDFTKDNYYLDNISASGYVNNVKVRLDDKMNAIEIPK
                     LDLNLNKQKLDFVFNKAFYNGADLSSSKVYLYDLFDEKKVGIYLRIKSDNLKFDEKLA
                     KALEDYHFSLPFYQKSGKIKSDLELKIDFHDKGEISYSGILALENASISLADFNITKA
                     FVKLNQNDLNIENASVKNGFLEADFNAKFDLQKQQGNFNTQISRLYFDNGELLDLKNQ
                     NVEVKLDYSQNVNISIPQWNLILNFKDGLEANLNNPKILFSFSPLLKKLGF"
BASE COUNT          292 a           83 c          127 g          306 t
ORIGIN      
        1 tttagattat ttgcagggct ttatagattt tactaaagat aattattatt tagacaatat
       61 tagtgcatca ggttatgtta ataatgtcaa agttcgcttg gatgataaaa tgaatgctat
      121 tgaaattcca aaactcgatt taaatttaaa caaacaaaag ctcgattttg tctttaataa
      181 agctttctat aatggtgctg atttaagttc tagtaaggtt tatctatatg atttgtttga
      241 tgaaaaaaaa gttgggattt atttgcgcat taagtctgat aatctaaaat ttgacgaaaa
      301 acttgctaaa gctttagagg attatcattt ttcactacct ttttatcaaa aaagcggaaa
      361 aattaaaagt gatttggagc ttaaaattga ttttcatgat aagggtgaaa tttcttatag
      421 tggtatttta gctttagaga atgctagtat ttctttggct gattttaata ttacaaaagc
      481 atttgtaaaa ttaaatcaaa atgatttaaa tatagaaaat gccagtgtta aaaatggctt
      541 tttagaagct gattttaatg ctaaatttga cttacaaaaa cagcaaggaa atttcaatac
      601 tcagatttca aggctttatt ttgacaatgg agagctttta gatttaaaaa atcaaaatgt
      661 agaagtaaaa ttagattatt cgcaaaatgt taatattagc attcctcagt ggaatttgat
      721 tttaaatttt aaagatggac ttgaggctaa tcttaataat cctaagattt tattttcatt
      781 ttctccatta cttaaaaagc ttgggttt
//
LOCUS       DAPIWQ010000239          802 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.243, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000239 DAPIWQ010000000
VERSION     DAPIWQ010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..802
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.243"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            1..>802
                     /locus_tag="RJ267_001823"
     CDS             1..>802
                     /locus_tag="RJ267_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein"
                     /protein_id="HDV7389642.1"
                     /translation="MQNLLLYIKNNLTPTLAQILLQALKNSNNEKFFTFVLENIETIC
                     TWLNSSEFKNRYLSIKHPYPPLINPNFIEIDASRHCAELAWDLNLPLPKHYKFIYISP
                     HGVGAAAFLRYLNQCCDVTCFASWVLPPDSKERYCINYMCLNDNTITQYAINISEINL
                     PYFDKYLSLLDFNSKIICGVRDPIGILKHNWGRDWSKVLRNYPSEFNLTYDWRYYIDY
                     LAHQNHKIKIDINELQQGVFIISYLLKYFNKDNVYYLDMEEIRQSKAFD"
BASE COUNT          287 a          130 c          103 g          282 t
ORIGIN      
        1 atgcaaaatc ttttactcta tataaaaaat aacctaactc caaccctagc tcaaattctt
       61 ttacaagctt taaaaaattc gaataatgaa aaatttttta cctttgtttt ggaaaatatt
      121 gaaacaattt gcacttggct caattctagc gaatttaaga atagatattt atcaataaaa
      181 catccttatc cacctttaat caatcctaat tttatagaaa tagatgctag tcgacattgt
      241 gcagaattag cttgggattt aaatttaccc ctacctaaac actataaatt tatctatatt
      301 tctccacatg gcgttggagc agcagcattt ttaagatacc ttaatcaatg ttgcgatgta
      361 acttgttttg cctcctgggt tttaccacct gatagcaaag agagatattg tattaattac
      421 atgtgtctaa atgacaatac gattactcaa tatgctatta atatatcaga aattaatcta
      481 ccttattttg ataaatatct atctttattg gattttaact ctaaaattat ttgcggagtt
      541 cgcgatccaa taggaatttt aaagcataac tggggaagag attggagtaa agttttaaga
      601 aactatccct ctgaatttaa tctaacttat gattggcgtt attatattga ctatcttgct
      661 catcaaaatc ataaaattaa aatcgatata aacgaactac aacaaggagt ttttatcatc
      721 tcttatttat taaaatattt taacaaagac aatgtatact atcttgatat ggaagaaatc
      781 cgccaatcaa aggccttcga ta
//
LOCUS       DAPIWQ010000240          786 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.244, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000240 DAPIWQ010000000
VERSION     DAPIWQ010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 786)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 786)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..786
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.244"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..196
                     /locus_tag="RJ267_001824"
     CDS             <1..196
                     /locus_tag="RJ267_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HDV7389643.1"
                     /translation="SIGLKECKEYLDGEISFKELENLITIHTTQLAKRQRTFNKKFQS
                     KALEFDKALATLRMKFSIEK"
     gene            complement(182..745)
                     /locus_tag="RJ267_001825"
     CDS             complement(182..745)
                     /locus_tag="RJ267_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HDV7389644.1"
                     /translation="MDFYSLIFLSCALGMDAFAVSLCKGFSVKKLHLKHYLIVGIYFG
                     GFQALMPTIGYFIGITFASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFG
                     FKTMLALAIATSIDALAVGVSFAFLNVNLLLAIFLIGIITFILCIIALKIGNKFGIYL
                     KNKAELLGGLVLIILGVKILIEHLFFD"
BASE COUNT          333 a          118 c           92 g          243 t
ORIGIN      
        1 ttctataggt ttgaaagagt gtaaagaata tttagatgga gaaatttcct ttaaagagct
       61 tgaaaattta atcacgatac atactacaca acttgccaaa agacaaagaa cttttaataa
      121 aaaatttcaa agtaaagcct tggaatttga taaagcttta gctactttaa gaatgaaatt
      181 ttcaatcgaa aaataaatgt tctattagaa tttttactcc tagtataatt aaaaccaatc
      241 cgcctaaaag ttcagcttta tttttaagat aaattccaaa tttattccct atttttagag
      301 caatgataca taaaatgaag gtgataatac ctattaaaaa tatagctaat aataaattta
      361 catttaaaaa tgcaaaactc acaccaactg ctagtgcatc gatactcgta gcaattgcta
      421 aagctagcat ggttttaaag ccaaattgat tggcattact atcgcaattt tcattttcca
      481 atgactcttt gatcattttt aatcctatta aagaaagtaa aataaaagct atccaatgat
      541 caatactcgc aataaaagat gcaaaagtta tgcctataaa ataaccaata gttggcatca
      601 aagcttgaaa tccaccaaaa taaattccaa caataagata atgttttaaa tgtagttttt
      661 taacactaaa acctttgcat agtgatacag caaaagcatc cattcctaaa gcacaggata
      721 aaaaaataag actataaaaa tccataacaa atcctaaaat tttataaaaa attgaagatg
      781 aaatta
//
LOCUS       DAPIWQ010000241          781 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.245, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000241 DAPIWQ010000000
VERSION     DAPIWQ010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 781)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 781)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.245"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..>781)
                     /locus_tag="RJ267_001826"
     CDS             complement(<1..>781)
                     /locus_tag="RJ267_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HDV7389645.1"
                     /translation="TENFTFYTTSFKDLNLSKNQFLSLRIITHNINFKDYLSKSFYAP
                     SYDFEKLKEKEYNPIISYFLNQHTNEKIKEFYGALFFALPISLELRNDVNYYGIAHLI
                     AISGYHIGLLFSLIFFILAPIYSFFQKRYFPYRNLRLDLSILIFALLLAYACLIGFVP
                     SFVRSLIMAFWVFYLLCKNIKIINFVTLFCSILLCISLYPRLLFSIGFLFSILGVFYI
                     FLYMHHFANKFNNLINIILLNIWTFFAMVLPVLYFFPLISYQ"
BASE COUNT          352 a           89 c          106 g          234 t
ORIGIN      
        1 gttggtagct tataagtgga aaaaaataaa gcacaggtaa aaccatagca aaaaaagtcc
       61 aaatattaag caaaataata tttataagat tattaaattt atttgcaaaa tgatgcatat
      121 ataaaaaaat ataaaaaaca cctaaaatag aaaataaaaa tccaatacta aataaaagtc
      181 tagggtaaag agaaatgcac aataaaatac tacaaaaaag cgtaacgaaa ttaatgattt
      241 ttatattttt acacaataga taaaaaaccc aaaaagccat aatcaaggag cgcacaaaag
      301 aagggacaaa tcctattaaa caagcataag ctaaaagtag tgcaaaaatt aaaatactta
      361 aatctaaacg taaatttcta taaggaaaat atcttttttg gaaaaaacta taaattggag
      421 ctaaaataaa gaaaattaaa ctaaaaagta agcctatgtg ataaccgcta attgctataa
      481 ggtgtgctat accgtagtaa tttacatcgt ttctaagctc taaagatatg ggcagtgcaa
      541 aaaataaagc accataaaat tctttaatct tttcatttgt atgttgattt aagaagtaag
      601 atataatggg attgtattct ttttctttta atttttcaaa atcataagaa ggtgcgtaaa
      661 aacttttact cagatagtct ttaaagttaa tattatgggt gataattcta aggcttaaaa
      721 attgattctt gcttaaattt aaatccttaa aacttgtagt ataaaaagtg aagttttcag
      781 t
//
LOCUS       DAPIWQ010000242          774 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.246, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000242 DAPIWQ010000000
VERSION     DAPIWQ010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 774)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.246"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            31..639
                     /gene="plsY"
                     /locus_tag="RJ267_001827"
     CDS             31..639
                     /gene="plsY"
                     /locus_tag="RJ267_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HDV7389646.1"
                     /translation="MENLIIYAFIYLLGSIPFGLILAKFFAKTDIKKEGSKSIGATNV
                     LRVVKEKNPKLAKKLAIATIILDFAKAAIPLLTLKFLHYDQALLWSVAVLAILGHCFS
                     IYLLFEGGKGIATGAGAMIVLLPLEVLTAFIVWVVIGKIFKISSLASLAALLAFVVSS
                     FIFNYDLEIHTHAPVFIIAFIIVYKHLPNIKRLIFKEECKVI"
     gene            624..>774
                     /locus_tag="RJ267_001828"
     CDS             624..>774
                     /locus_tag="RJ267_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HDV7389647.1"
                     /translation="MQSHIKIKFHFKCIIGILDFERRKKQKIIIKLKAKANEFLNYAE
                     VITKIK"
BASE COUNT          281 a           96 c          120 g          277 t
ORIGIN      
        1 aaaattttaa gatgatttga aaaggatatt atggaaaatt taataattta cgcttttata
       61 tatcttttag gttcaatccc ttttgggcta atcctagcta aattttttgc taaaactgat
      121 atcaaaaaag aaggttcaaa aagtatagga gcaaccaatg ttttaagagt agtaaaagaa
      181 aaaaatccca aactagcaaa aaaacttgcc attgctacaa taattttaga ttttgcaaaa
      241 gcagctattc ctttattaac cttgaaattt cttcattatg atcaagcttt gctttggagc
      301 gtggcagttt tggctatttt gggacactgt ttttcaattt acttgttatt tgaaggaggg
      361 aaaggcatag caacaggagc aggtgctatg atagttttgc ttccattgga agtgcttaca
      421 gcatttattg tatgggtagt tataggaaaa atttttaaaa tatcttcgtt agcttcttta
      481 gcagcgttac ttgcttttgt tgtaagttct tttatattta attatgactt agaaattcat
      541 acacatgcac ccgttttcat tatcgctttt attatagtat ataaacatct acctaatatt
      601 aaaagattga tttttaaaga agaatgcaaa gtcatataaa aataaaattt cactttaagt
      661 gtatcattgg tatattagat ttcgaaagaa ggaaaaaaca aaaaattatt atcaagctta
      721 aagctaaagc aaatgaattt ttaaattatg cagaagtaat taccaaaatt aaaa
//
LOCUS       DAPIWQ010000243          752 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.247, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000243 DAPIWQ010000000
VERSION     DAPIWQ010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.247"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..227
                     /locus_tag="RJ267_001829"
     CDS             <1..227
                     /locus_tag="RJ267_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HDV7389648.1"
                     /translation="DFLIYTCALSPSGEFAVYSDNEAGVSEVFSTSDFKPVKTFNNEN
                     LMSEFIIFLNNKDFIVSGFGDSIMFRSIDE"
     gene            220..558
                     /locus_tag="RJ267_001830"
     CDS             220..558
                     /locus_tag="RJ267_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HDV7389649.1"
                     /translation="MNNLSSVLILAKEEYINDLKKAISEIPFCSVELCENEKIIVVIE
                     SENLEDELNSYKMLEKLPNIISINMVFSYQDLNDDIQKAINSGAIETIEKNENAENVR
                     YYGSVFNQFS"
     gene            571..744
                     /gene="tatA2"
                     /locus_tag="RJ267_001831"
     CDS             571..744
                     /gene="tatA2"
                     /locus_tag="RJ267_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA2"
                     /protein_id="HDV7389650.1"
                     /translation="MVFLIPLLIIIGVIFGIDYVYFKNQDLKVQVKKEQKELNSSLEK
                     EKKEYIEKLFKTK"
BASE COUNT          289 a           58 c          131 g          274 t
ORIGIN      
        1 aagatttttt gatatatact tgtgctttaa gtcctagtgg agaattcgct gtttatagcg
       61 ataatgaagc tggagttagt gaagttttta gcacaagtga ttttaagcct gttaaaactt
      121 ttaataatga aaatttgatg agtgagttta ttattttttt aaacaataaa gattttatcg
      181 tttcaggctt tggtgatagt ataatgttta ggagtattga tgaataatct ttctagtgtt
      241 ttgattttag caaaagaaga atatataaat gatttaaaaa aggctatatc tgaaattcct
      301 ttttgttctg tagaactttg tgaaaatgaa aagattatag ttgtgattga aagtgaaaat
      361 ttagaagatg agttaaactc ttataaaatg cttgagaaat tgccaaatat tatcagtatt
      421 aatatggttt tttcttatca agatttaaat gatgatatcc aaaaagcaat caatagtggc
      481 gcaatagaaa cgatagaaaa aaatgaaaat gctgagaatg ttcgctacta tggtagtgtg
      541 tttaatcaat tttcttaaag tgtaaagtat atggtatttt taatcccatt gcttattata
      601 attggtgtta tttttggaat tgattatgtg tattttaaaa atcaagattt aaaagtgcaa
      661 gttaaaaaag aacaaaaaga attaaattct agcttagaga aagaaaaaaa agaatatata
      721 gaaaaattgt ttaaaacaaa ataggcatta aa
//
LOCUS       DAPIWQ010000244          752 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.248, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000244 DAPIWQ010000000
VERSION     DAPIWQ010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.248"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..>752
                     /locus_tag="RJ267_001832"
     CDS             <1..>752
                     /locus_tag="RJ267_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HDV7389651.1"
                     /translation="QINLTQNFKFHSKMDSFELFKLLLSRQDTEFKAFIKDETREILS
                     FSPELFFKTKKRKIFTKPMKGTIKRDKDPIKDEENKIFLQNDTKNLSENVMICDLLRN
                     DLSKIITKKSLKTKLFEIQSHPTLHQMTSSVQGKLKKNISLYQIFKALFPCGSITGAP
                     KLESIKFIEELEQRDRGIYCGTIGLIHKNKNKFNVAIRTLEKQDEIYTYSTGSGLVWD
                     SKFKDEFEELKLKSAILNPYDFHLFETMYFKN"
BASE COUNT          309 a          112 c           93 g          238 t
ORIGIN      
        1 atcaaatcaa cctcactcaa aattttaaat ttcatagcaa aatggattct tttgaacttt
       61 ttaaactttt gctttctaga caagatactg aatttaaagc ttttataaaa gatgaaacaa
      121 gagaaatttt atccttctct cctgaacttt tcttcaaaac caaaaaaaga aaaatattta
      181 caaaacctat gaaaggcaca attaagcgtg ataaagatcc tataaaagat gaagaaaata
      241 aaattttctt gcaaaatgat acaaaaaatc taagtgaaaa tgttatgatt tgcgatcttt
      301 tacgcaacga tctttcaaaa atcatcacaa aaaaaagctt aaaaaccaaa ctttttgaaa
      361 ttcaaagtca ccctacttta catcaaatga cttcaagtgt acaaggaaaa cttaaaaaaa
      421 atatttcttt atatcaaatt tttaaagctc tctttccttg tggttctatt acaggtgctc
      481 caaagcttga aagtattaaa tttattgaag aattagaaca aagagatcgt ggtatttact
      541 gcggaaccat aggtttaata cataaaaata aaaataaatt taacgtagcc atacgcacct
      601 tagaaaaaca agatgaaatt tatacttata gcacaggtag tggcttggtt tgggactcaa
      661 aattcaaaga tgaatttgaa gaattaaaac ttaaaagcgc gatcttaaat ccttatgatt
      721 ttcatctttt tgaaaccatg tattttaaaa at
//
LOCUS       DAPIWQ010000245          738 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.249, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000245 DAPIWQ010000000
VERSION     DAPIWQ010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.249"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..>738)
                     /locus_tag="RJ267_001833"
     CDS             complement(<1..>738)
                     /locus_tag="RJ267_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDV7389652.1"
                     /translation="EFPRIKNILKTHQNYQPIMNNIFHNFNYFMQNFDLIEEWLLSDD
                     FKEKYKKENHPYPSLLDPKKLNDENEKINYHNIPAELAWEMNLPLPDRYEFVGFFLHT
                     NGEKAMERFLKEVGVVLIGAFGYEDGKRYISIFNFLISEACICNDLKFAIGILDVNCQ
                     KYDKFCFLLQNKPVLILLRDPIDSLKSFINVRHQKNGFNEIFKIDINNTDFDKINDRI
                     VYVHESNGCFNPDTNQKFPSLESIKAL"
BASE COUNT          278 a          107 c           74 g          279 t
ORIGIN      
        1 aaagagcttt aatactttca agagatggaa atttttgatt tgtatctgga ttaaaacaac
       61 catttgattc gtgaacataa actattctat cattaatttt atcaaaatca gtattgttaa
      121 tatctatttt aaaaatttca ttaaatccat ttttctgatg tctaacatta ataaaagatt
      181 tcaaagaatc aataggatct ctaagcaaaa tcaatacagg tttattttgc aacaaaaaac
      241 aaaatttatc atacttttga caattcacat cgagtatacc tatggcaaat tttaaatcat
      301 tacatataca agcttcacta atcaaaaaat taaaaatact aatataacgt ttaccatcct
      361 catatccaaa tgcaccaata agaacaacac caacttcttt taaaaatctc tccatagctt
      421 tttctccatt tgtatgcaaa aaaaatccaa caaactcata tctatccggt aaaggtaaat
      481 tcatctccca agcaagttca gcaggtatgt tatgataatt gattttttca ttttcatcat
      541 ttaatttttt aggatcaagt agtgaaggat aaggatgatt ttctttttta tatttttctt
      601 tgaaatcatc tgataatagc cattcttcta taagatcaaa attttgcata aaataattaa
      661 aattatgaaa aatattattc attataggtt gataattttg atgtgttttt aagatatttt
      721 ttattcttgg aaattctt
//
LOCUS       DAPIWQ010000246          715 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.250, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000246 DAPIWQ010000000
VERSION     DAPIWQ010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.250"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            320..667
                     /locus_tag="RJ267_001834"
     CDS             320..667
                     /locus_tag="RJ267_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389653.1"
                     /translation="MKKSILFASALLASSMLFADSLKLEGTIAQIYDNNKTLLIDSIY
                     GGQMAIKVLPNTEIEMDDCGIFGTDKDGTFKDLKVGNFLESKISYGTPATPNTQAIPV
                     ARKIEIQCYKKAY"
BASE COUNT          283 a           90 c           85 g          257 t
ORIGIN      
        1 ccatatccta tccttttgta tcatttttat tcaataataa aatggatatt ttaagtccaa
       61 cttatatgtg tttaaattta tagatttttg gaaaaaatat attttttaat gtaactattt
      121 taaacaagaa taaaaaataa tttttaatta tttttgataa agtattcact cttttaaatt
      181 tacaactaga agtaacgatt ggtaaatatg ataaatcaca taatcttatc aaaactaaaa
      241 agtcaaaatt tttaacttca cattcacttc acttaaaaag tttataatgt tatcacttta
      301 cattgaagga gaaataatta tgaaaaaaag tattttattt gcatcagcac ttttagctag
      361 ctcaatgctt tttgcagata gtctaaaact tgaaggtact attgcacaaa tttatgataa
      421 caataaaacc ttgcttattg actcaattta tggcggacaa atggctataa aagttctacc
      481 aaataccgaa atagaaatgg atgattgtgg tatttttgga acagataaag atggaacttt
      541 taaagactta aaggttggaa attttttaga aagtaaaatt tcttatggaa cacctgctac
      601 gccaaatact caagctattc cagtagctag aaaaattgaa attcaatgtt ataaaaaagc
      661 ttattaatat aaatccctta acaagggatt tataaaaatc attctttact aaact
//
LOCUS       DAPIWQ010000247          715 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.251, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000247 DAPIWQ010000000
VERSION     DAPIWQ010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.251"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            30..>715
                     /gene="ung"
                     /locus_tag="RJ267_001835"
     CDS             30..>715
                     /gene="ung"
                     /locus_tag="RJ267_001835"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HDV7389654.1"
                     /translation="MEEITINIDKIKINDDWKEFLRDEFQKKYFLEIKKQYLNAINQN
                     IIIYPPANLIFNAFNLCPLKEIKIIILGQDPYHQPNQAMGLSFSVPKNVKIPPSLNNI
                     FKELQNDLNITPAKSGDLSSWAKQGVLLLNSILSVEANKAASHSSWGWQEFSDAIIHK
                     LSNEKSGLVFMLWGNYAKNKEILIDNTKHLILKAAHPSPLARTGFLGCKHFSKANEFL
                     KKVGKIPIDW"
BASE COUNT          285 a           92 c          111 g          227 t
ORIGIN      
        1 ttttaataat ttaaataatt agggataata tggaagaaat tacaataaac atagataaga
       61 ttaaaataaa tgatgactgg aaagaatttt taagagacga atttcaaaaa aaatattttc
      121 tagaaatcaa aaaacaatac ctaaatgcga ttaatcaaaa tataattatt tatccacctg
      181 cgaatttaat ctttaatgct tttaatttat gtcctttaaa agaaattaaa attattatcc
      241 taggacaaga tccttatcat caaccaaatc aagcaatggg gcttagtttt tcggttccaa
      301 aaaatgtaaa aatcccacca agtcttaata atatttttaa agaattgcaa aatgatttaa
      361 acatcactcc agcaaaaagc ggagatttaa gctcttgggc aaaacaagga gttttgctct
      421 taaattctat tcttagcgtt gaagcaaata aagcagctag ccatagttcg tggggttggc
      481 aagaatttag tgatgctata atacataaat taagtaatga aaaatcaggg cttgttttta
      541 tgctttgggg aaattacgca aaaaacaagg agattttgat tgataatact aagcatttga
      601 ttttaaaagc agctcaccca agccctttag ctagaacagg atttttaggt tgtaagcatt
      661 tttcaaaggc taatgaattt ttaaaaaaag ttggtaaaat tcctatagat tggaa
//
LOCUS       DAPIWQ010000248          693 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.253, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000248 DAPIWQ010000000
VERSION     DAPIWQ010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 693)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.253"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..>693)
                     /locus_tag="RJ267_001836"
     CDS             complement(<1..>693)
                     /locus_tag="RJ267_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7389655.1"
                     /translation="HGIKPDYVCMLERTELTAEFFNHDFGEFDKDIVFICAGVVHPKA
                     IEYLKGRNLVITQKVLAFPYYINLKDFSYAAVGLSVAHTLSYLATYLSHKNIIFIGQD
                     LAYAENGNSHPDDYQNSANYESQMYEHILTEAYGGNGKVETHSIWLLFKNWFENEMIP
                     NTRKMGITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFL
                     LKAYYKVYQSIKH"
BASE COUNT          241 a          119 c           82 g          251 t
ORIGIN      
        1 atgtttaata ctttgataaa ctttataata agccttaagt aaaaattcat tttgtttatt
       61 taaacttaaa ggttctaatt tttcaaaagg tttatttaaa tctttatcaa gtaaattctc
      121 acaagcccat agaaaaggtt tttctatggt tccttctatc cttgctccac cttcggtaca
      181 gttataggtg gtgataccca tttttctagt atttggaatc atttcatttt caaaccaatt
      241 tttaaataaa agccatatac tatgagtttc aacttttcca tttcctccat aagcctcggt
      301 taaaatatgt tcatacattt gactttcata attagctgaa ttttgataat catcaggatg
      361 agaattgcca ttttcagcat aagctaaatc ctgtcctata aaaatgatgt ttttatgact
      421 tagataagtt gctagataag ataatgtatg tgcaacacta agtcctacag cagcataaga
      481 aaaatcttta agatttatat aatatggaaa agcaagaact ttttgagtta tgactaaatt
      541 tctacccttt aaatactcaa tcgcctttgg atgaacaaca ccagcacaaa taaacacaat
      601 atccttatca aattctccaa aatcatgatt aaaaaactct gctgttaatt cagttctttc
      661 caacatacaa acataatcag gttttatacc atg
//
LOCUS       DAPIWQ010000249          685 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.254, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000249 DAPIWQ010000000
VERSION     DAPIWQ010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 685)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.254"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            50..553
                     /gene="ctf"
                     /locus_tag="RJ267_001837"
     CDS             50..553
                     /gene="ctf"
                     /locus_tag="RJ267_001837"
                     /EC_number="1.16.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HDV7389656.1"
                     /translation="MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLF
                     AHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSIN
                     TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKN
                     IALSRKK"
BASE COUNT          262 a           97 c          105 g          221 t
ORIGIN      
        1 aaataatata tcattataaa acattttaaa ttttaataag gagataagaa tgctttctaa
       61 agaagttgta aaattactca atgaacaaat aaacaaagaa atgtatgcag caaacttata
      121 tcttagtatg agttcttggt gctatgaaaa cagtcttgat ggagctggag ccttcttgtt
      181 tgcacatgca agcgaagaaa gtgatcatgc taaaaagctt atcacttatc ttaatgaaac
      241 agattctcat gtagagcttc aagaagtaaa acagcctgaa caaaatttca aatctttact
      301 tgatgttttt gaaaaaacct atgaacatga gcaatttatc acaaaatcaa tcaatacttt
      361 agttgaacac atgctaacac ataaagacta ttctactttt aatttcttac agtggtatgt
      421 aagcgaacaa cacgaagaag aagcactttt ccgcggtata gttgacaaga ttaagttaat
      481 tggagaacac ggaaatggac tttatttagc tgatcaatac atcaaaaata ttgcattaag
      541 cagaaaaaaa taatctttgc cctactatgg gcaaatctcg ctttggattg aaggtatgac
      601 ttatttttct ctagaattta gtattttaat gatagctttt tttgctattt attggacttt
      661 taaaaatgat tacaaaatac aaaat
//
LOCUS       DAPIWQ010000250          642 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.255, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000250 DAPIWQ010000000
VERSION     DAPIWQ010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 642)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.255"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..>642)
                     /locus_tag="RJ267_001838"
     CDS             complement(<1..>642)
                     /locus_tag="RJ267_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HDV7389657.1"
                     /translation="TKRGLEQDNQAVKESVQTVSVVEGGNLTARITANPRNPQLIELK
                     NVLNKLLDVLQARVGSDMNAIHKIFEEYKSLDFRNKLENASGSVELTTNALGDEIVKM
                     LKQSSDFANALANESGKLQTAVQSLTTSSNSQAQSLEETAAALEEITSSMQNVSVKTS
                     DVITQSEEIKNVTGIIGDIADQINLLALNAAIEAARAGEHGRGFAVVADEVRK"
BASE COUNT          192 a          118 c           94 g          238 t
ORIGIN      
        1 aactttctaa cttcatcagc taccactgca aagcctctac catgttctcc agcacgagct
       61 gcttcaatag ctgcatttaa agctaaaaga ttgatttgat ctgcaatatc acctataata
      121 cctgtaacat ttttaatctc ttcggattga gtgataacat cactagtttt aactgaaaca
      181 ttttgcatag aagaagtgat ctcttctaaa gctgctgcag tttcttctaa agattgagct
      241 tgagaatttg aagaagtggt taagctttga acagcagttt gtaattttcc actttcatta
      301 gctaaagcat tagcaaagtc tgaactttgt tttagcattt taactatttc atcacctaaa
      361 gcattagtag ttaattctac actaccgcta gcattttcta atttatttct aaagtctaag
      421 cttttgtatt cttcaaaaat tttatgaata gcattcatat cagaacctac tctagcttgt
      481 aaaacatcaa gaagtttatt tagaacattt ttaagttcaa taagctgtgg gtttcttgga
      541 ttagcagtaa ttcttgctgt taaattacca ccttctacaa ctgatacggt ttgaactgat
      601 tctttaacgg cttgattgtc ttgttctaag cctcttttag ta
//
LOCUS       DAPIWQ010000251          639 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.256, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000251 DAPIWQ010000000
VERSION     DAPIWQ010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 639)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.256"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            27..437
                     /gene="perR"
                     /locus_tag="RJ267_001839"
     CDS             27..437
                     /gene="perR"
                     /locus_tag="RJ267_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HDV7389658.1"
                     /translation="MELLQMLKKHELKATPQRLCVLKILKRHEHPNIDELYIEIKKEY
                     PSISLATVYKNLNTLQEQGLVVEINVLNQKTCYDIYEEEHIHVVCTKCGGIEDLSFKD
                     AKLYEYQEHLEKKIGNLVNHLSVCAYVDNCKKCH"
BASE COUNT          258 a           75 c           89 g          217 t
ORIGIN      
        1 acttaaaaaa gcaaggaata aataaaatgg aattactaca aatgcttaaa aaacatgagt
       61 taaaagctac tccgcaaaga ctatgtgttt taaaaatttt aaaaagacat gagcatccta
      121 atattgatga attatatata gaaattaaaa aagaataccc ttcaatctct ttagcgacgg
      181 tttataaaaa tcttaatact ttacaagaac aaggtttagt tgttgaaatc aatgttttaa
      241 atcaaaaaac ttgttacgat atctatgaag aagaacatat tcatgttgtt tgcaccaaat
      301 gtggtggtat agaggattta agttttaaag atgctaagct ttatgaatat caagagcatt
      361 tagaaaaaaa gataggcaat ctcgtcaatc atctgtctgt ttgtgcttat gttgataatt
      421 gcaaaaagtg tcattaagca aaataaggtt aaaataaccc atatatttta agggttattt
      481 taatggttta tgaaattcaa aaaaactttt tactatctga ttgcactctt ttagagaatt
      541 taaaaaaaga taatatacct tttcgaaatt ctaaatttga aactttttat actcaaataa
      601 cttcaaatca tagtgttaaa tttcaaagtt tttgcaatg
//
LOCUS       DAPIWQ010000252          619 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.257, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000252 DAPIWQ010000000
VERSION     DAPIWQ010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 619)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.257"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..597
                     /locus_tag="RJ267_001840"
     CDS             <1..597
                     /locus_tag="RJ267_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HDV7389659.1"
                     /translation="IFKDFYNILNQKSSYKEYQNFTLFKLDEKIFHKKHSLFYNFSLP
                     FKNRYKGGILKLILYKDGRYEFQQSALKQNSNDILLLSDDKINSKSDNLYHKSSLRTF
                     YNQHSYKWQQNLCYDIAFFNEKDELCEGSRTNLILEKNAQFYTPQIQSGMLNGVYRNF
                     LVNLGLIKEKVLFKQDLFEAENIYCINSVHGLKKVKLQ"
BASE COUNT          256 a           81 c           73 g          209 t
ORIGIN      
        1 atctttaaag atttttataa tattttaaat caaaaaagtt cttataaaga atatcaaaat
       61 tttacacttt ttaaactcga tgaaaaaatt tttcacaaaa aacactcttt attttataat
      121 ttttccctac cctttaaaaa tcgatacaaa ggaggaattt taaaactgat tttatataaa
      181 gacggaagat acgaatttca acaaagcgcc ttaaaacaaa attcaaatga tattttgctt
      241 ttaagtgatg ataaaatcaa ctcaaaaagt gataatctct atcacaaaag ctctttacgt
      301 actttttata atcaacactc atacaaatgg cagcaaaact tgtgttatga catagctttt
      361 tttaacgaaa aagatgaact ttgcgaaggc tcaagaacca atctcatctt agaaaaaaac
      421 gctcaatttt atactccaca aattcaaagt ggtatgttaa atggagtata tagaaacttc
      481 ttagtcaatc ttggtttgat aaaagaaaaa gtattattta agcaagattt atttgaagca
      541 gaaaatattt attgtattaa ttccgtgcat ggtttaaaaa aggtaaaatt acaatgaaga
      601 aaattttatt tatagataa
//
LOCUS       DAPIWQ010000253          613 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.258, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000253 DAPIWQ010000000
VERSION     DAPIWQ010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 613)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.258"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            18..>613
                     /locus_tag="RJ267_001841"
     CDS             18..>613
                     /locus_tag="RJ267_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7389660.1"
                     /translation="MSLSKLFDFYSVFEGFEKLNILNFEDDVFTNIERILLDDYLKIK
                     SYFALDETSSYALTLLAKNNRKRFSINRKIQHFKALSTLKYLLETGIIKLEYSKEAKK
                     IKDKRQKIKKELRSYVVQDKIIFSNHFTRFFFYFLKPNEKLILQNRYKEVLECIKEKF
                     ELYQSFCFEQLSRELLEKKFNINGVQSYWDKNLELDLY"
BASE COUNT          236 a           66 c           88 g          223 t
ORIGIN      
        1 tagatttgca taagaatttg tctttaagta agctttttga tttttatagt gtgtttgaag
       61 gttttgaaaa attaaacatt ttaaattttg aagacgatgt atttacaaat atagagcgaa
      121 ttttgcttga tgattatcta aaaattaaaa gttatttcgc cttggatgaa acaagttctt
      181 acgctcttac tttactagct aaaaacaatc gcaagcgttt ttctatcaat agaaaaattc
      241 agcattttaa agctttatct acacttaaat atcttttaga aacaggtata ataaaacttg
      301 agtatagtaa ggaagctaaa aaaataaaag ataaaagaca aaaaatcaaa aaagaactaa
      361 gatcttatgt tgtccaagat aagattatat ttagcaacca ttttactcgt ttcttttttt
      421 attttttaaa gcccaatgaa aagcttattt tgcaaaatcg ttataaagaa gttttagaat
      481 gtattaagga aaaatttgaa ctttatcaaa gtttttgttt tgaacagctt tctagagaat
      541 tacttgagaa aaaattcaat atcaatggag tgcaaagtta ctgggataag aatttagaac
      601 ttgatcttta tta
//
LOCUS       DAPIWQ010000254          591 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.259, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000254 DAPIWQ010000000
VERSION     DAPIWQ010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.259"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..423
                     /locus_tag="RJ267_001842"
     CDS             <1..423
                     /locus_tag="RJ267_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HDV7389661.1"
                     /translation="ITFLITTKQLIILDPDREKYTDVTKKIINWEIKYSNIIILLDLD
                     KWNIIKKDSSFLEYQQKIQEYLKALEDNEQKRIQNAITEIEILNYLKENKDIARKFKQ
                     ILDNDHLPYIKQHRPDIVASWKYYQEFEKMCEELDENN"
BASE COUNT          261 a           66 c           75 g          189 t
ORIGIN      
        1 attacatttt tgattacaac taagcagctt attattttag atccagatag ggagaagtat
       61 acagatgtta caaaaaaaat aattaattgg gaaattaaat atagcaatat tataatttta
      121 ttagatttag ataaatggaa tataattaaa aaagatagta gttttttaga atatcaacaa
      181 aaaattcaag aatatctaaa agcattagaa gataatgagc aaaaaagaat tcaaaatgct
      241 atcacagaaa ttgaaatctt aaattattta aaagaaaata aggacattgc acgcaaattt
      301 aaacaaattt tagataatga tcatcttcct tacatcaaac aacatcgtcc agatatagta
      361 gcttcttgga aatactacca agaatttgaa aagatgtgtg aagaattgga tgaaaataat
      421 taattctagt tttatgattt tataactaat aattacatat aattattcct tgttttttaa
      481 ttaatttatt cttaaaggaa aaacccatgc ttaacccaaa ttcagccata gaaagagtga
      541 aaaaccattt agcttataaa ctaggtcaaa ctgtgataga acatagacat a
//
LOCUS       DAPIWQ010000255          591 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.260, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000255 DAPIWQ010000000
VERSION     DAPIWQ010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.260"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..>591
                     /gene="pseD"
                     /locus_tag="RJ267_001843"
     CDS             <1..>591
                     /gene="pseD"
                     /locus_tag="RJ267_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin modification protein PseD"
                     /protein_id="HDV7389662.1"
                     /translation="HNIKPDYVLSLERIPLTSEFFNNDFGEFDKDILFVLKSYVHPHT
                     TKYLQKNNRNFMLVSTYASFINYLKLDDFGYFNMGFSVANMNFLLAIHLKHKNIVLIG
                     QDLAYAKDGLSHTKDYSNLDKHEGHFQRDKNKYTTQAYGDNGKVESSFVWTLFRHNFE
                     QDVANAKKNYYITTYNCTEGGARIEGTIEKPFLWACE"
BASE COUNT          213 a           77 c           94 g          207 t
ORIGIN      
        1 cataatatta agcccgatta tgtgctttct ttggaaagga ttcctttaac ttctgaattt
       61 tttaacaatg attttgggga atttgataag gatattttgt ttgttctaaa atcctatgtc
      121 caccctcata ctacaaaata tcttcaaaaa aataatagaa attttatgct tgtatctaca
      181 tatgcaagtt ttataaatta tttaaaactt gatgattttg ggtattttaa tatgggattt
      241 agtgtagcta atatgaattt tttacttgct atacatttaa agcataaaaa tatcgtttta
      301 ataggacaag atttagctta tgctaaagat ggactttctc acactaaaga ttatagcaat
      361 cttgataaac atgaaggaca ttttcaaaga gataaaaaca aatataccac tcaagcttac
      421 ggagacaatg gaaaagttga aagttctttt gtttggactc tttttagaca taattttgaa
      481 caagatgtgg ccaatgcaaa aaaaaattat tatattacca cctacaactg taccgaaggt
      541 ggagcaagga tagaaggaac tatagaaaaa ccttttttat gggcttgtga g
//
LOCUS       DAPIWQ010000256          584 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.261, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000256 DAPIWQ010000000
VERSION     DAPIWQ010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 584)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.261"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..>584)
                     /locus_tag="RJ267_001844"
     CDS             complement(<1..>584)
                     /locus_tag="RJ267_001844"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389663.1"
                     /translation="NHPYPSLLDPKKLNDENEKINYHNIPAELAWEMNLPLPDRYEFM
                     WFFSCCSGSNAMYRFFKYCNIAADAHPALTGKIMYKDMYYYINNTTCSIAVIPPFMYD
                     FYHDCEHMNNKLLYLYSKVSDIIFIARDPISILKTALNHINNPKIWEQIDYEMKNVHM
                     NNVANFRFPILYYSYSIGRPNVKDLYKILDAKEF"
BASE COUNT          217 a           81 c           79 g          207 t
ORIGIN      
        1 aaaactcttt tgcgtcaaga attttatata aatctttaac attaggtcta cctatagaat
       61 aagaataata tagtatagga aatctaaaat tggcgacatt attcatatgt acatttttca
      121 tttcataatc tatttgctcc caaattttag gattattaat atggtttaag gctgttttca
      181 aaatactaat aggatctctt gcaataaaaa taatatctga aaccttggaa tataaataca
      241 aaagtttatt attcatatgc tcgcaatcat gataaaaatc atacataaat ggtggaatga
      301 ctgcaataga acaagtagtg ttatttatgt aataatacat atctttatac attattttac
      361 ctgttaaagc tgggtgtgca tcagctgcta tattgcaata tttaaaaaat cgatacattg
      421 catttgaacc actacaacaa ctaaaaaacc acataaactc atatctatcc ggtaaaggta
      481 aattcatctc ccaagcaagt tcagcaggta tgttatgata attgattttt tcattttcat
      541 cattaagttt tttaggatca agtaatgaag gataaggatg gttt
//
LOCUS       DAPIWQ010000257          578 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.262, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000257 DAPIWQ010000000
VERSION     DAPIWQ010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.262"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..>578
                     /gene="miaA"
                     /locus_tag="RJ267_001845"
     CDS             <1..>578
                     /gene="miaA"
                     /locus_tag="RJ267_001845"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HDV7389664.1"
                     /translation="ALIGTTASGKTYIANTLAREFNAVVLSLDSLCVYKEINIASAKP
                     SQDDLASIKYFGVNLLSVNEHFNVELFIREYQKAKEFALARNLPLIIVGGTGFYLKTM
                     IDGLSEKTLESKSSLNNDEIYALLLNIDPNYKIEKNDTYRLKKWLGIYEQTREIPSEF
                     LKRTQKTGVLKDIEIYELAWDKEILKKRIKTR"
BASE COUNT          236 a           60 c          102 g          180 t
ORIGIN      
        1 tagcattaat aggaacaacc gcgagtggaa aaacatacat agccaatact ttagcaagag
       61 aatttaatgc tgttgtttta agtcttgata gtctttgtgt ttataaagag attaatatag
      121 caagtgccaa gccttcacaa gatgatcttg cgagtataaa atactttggg gtaaatttat
      181 tgagcgtgaa tgaacatttt aatgttgagt tattcataag agaatatcaa aaagcaaaag
      241 aatttgcttt agctagaaat ttacctctaa ttatagtagg tggaactgga ttttatttaa
      301 aaactatgat agatggttta agtgaaaaaa ccttagagtc aaagagttct ttaaataacg
      361 atgaaattta tgctctttta ttaaatattg atccaaacta taaaatagaa aaaaatgata
      421 cttatagatt aaaaaaatgg ctgggtattt atgaacaaac aagagaaatt cctagtgaat
      481 ttttaaaaag aacacaaaaa actggggtgc ttaaagatat agaaatttat gagcttgcgt
      541 gggataaaga aattttaaaa aaacgtatta aaactaga
//
LOCUS       DAPIWQ010000258          528 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.263, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000258 DAPIWQ010000000
VERSION     DAPIWQ010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.263"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            71..>528
                     /locus_tag="RJ267_001846"
     CDS             71..>528
                     /locus_tag="RJ267_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDV7389665.1"
                     /translation="MNLWDKKAKTYARYQNTLNTIQKQTFEYLQNLKISFQDKSIIDI
                     GCGTGVWTLHLAKEAKEILALDSANAMLEILQEDAKKLNLNNIKCKNLSFETWMQNNP
                     NVKFDLAFLSMSPALQNEKDYTNFLNLAKIKIYLGWADYRKSDFLDPIFK"
BASE COUNT          211 a           62 c           75 g          180 t
ORIGIN      
        1 aagccctttc tttgggcttg aattttaaaa atttatgcta tgattttata tattttataa
       61 aggaaagtat atgaatttat gggataaaaa ggctaaaact tacgcaagat atcaaaacac
      121 tttaaacact atacaaaaac aaacttttga atatttacaa aatttaaaga tttcctttca
      181 agataaaagt attatagata taggatgtgg aactggggtt tggactttac acttagctaa
      241 agaagctaaa gaaattttag ccctagatag tgcaaatgct atgcttgaaa ttttacaaga
      301 agatgctaaa aaactaaatc ttaacaatat aaaatgcaaa aatttgagct ttgaaacttg
      361 gatgcaaaac aatcctaatg ttaaatttga tcttgcattt ttaagtatgt ctcctgcttt
      421 acaaaatgaa aaagattata caaatttctt aaatctagcc aaaataaaaa tttatcttgg
      481 ttgggctgat tatagaaaaa gtgatttttt agatccgatt tttaaata
//
LOCUS       DAPIWQ010000259          512 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.265, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000259 DAPIWQ010000000
VERSION     DAPIWQ010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 512)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.265"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..423
                     /locus_tag="RJ267_001847"
     CDS             <1..423
                     /locus_tag="RJ267_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDV7389666.1"
                     /translation="NINMQRINKIIENPVIYYYFSRGARARLQNQLVYRLGKVVVEAK
                     SFNKIIKLPFLMLKICLEHNFEHKVYRSIVQFRPDLKLLPLECYLDYHEALVIKEHLS
                     YKFGKLILLSFKGWYKGKIFILPFMLKKRYKEYKNKMI"
BASE COUNT          186 a           46 c           86 g          194 t
ORIGIN      
        1 aatataaata tgcaaagaat taataaaata attgaaaatc ctgtaatata ttattatttt
       61 tctagaggag ctagagctcg tttgcaaaac cagctggtat atagattggg taaagttgtt
      121 gttgaggcaa agtcatttaa taaaattatt aaattacctt ttcttatgct caaaatttgc
      181 cttgagcata attttgagca taaagtttat aggtctattg tacaatttag accagatttg
      241 aagcttcttc cattagagtg ttatttggat tatcatgaag cattagttat aaaagagcat
      301 ttatcttata aatttggaaa attgattttg ctttctttta agggatggta taaagggaag
      361 atttttattt tgccatttat gttaaaaaaa agatataagg aatataagaa taagatgata
      421 taatattttt ggcagtttgt tttaaaggat gttttaatgc agcgatttaa aaaatggttt
      481 ttgtctatca taaaaaattt caagcaacat ga
//
LOCUS       DAPIWQ010000260          491 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.266, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000260 DAPIWQ010000000
VERSION     DAPIWQ010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 491)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.266"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..259)
                     /locus_tag="RJ267_001848"
     CDS             complement(<1..259)
                     /locus_tag="RJ267_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389667.1"
                     /translation="MTEEKLIKKEIFSYTIFIAIIALICIFKNEIWEFVKFIFSNLDF
                     ICGNFANFVSEDNIIFFPVTTLLIVFTIAICAVWGLSNVLSL"
BASE COUNT          213 a           68 c           47 g          163 t
ORIGIN      
        1 agagagataa aacattagat aatccccaaa cagcacaaat agctatagta aatactatta
       61 aaagagttgt aactggaaaa aatattatat tatcttcgct tacaaaattt gcaaaattac
      121 cacatatgaa atctaaatta gaaaaaataa attttacaaa ttcccaaatt tcatttttaa
      181 aaatgcaaat taaagcgata attgctataa aaattgtata agaaaatatt tcttttttaa
      241 ttaatttttc ttcggtcatt tttgtatctc ctttaaccat tctttatcta tttttccaca
      301 cacaagataa aacatacaat ctttaattga gaaaccataa gctaattgag cataagcaaa
      361 aaatatagat atagctgtca ttaaatcaac tagaaataaa actgttccca tataagatag
      421 atccgcatta aataccaata ttaaaaaaag tagagttctt aaattaataa aaatcgcgtg
      481 aatttttatg t
//
LOCUS       DAPIWQ010000261          463 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.268, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000261 DAPIWQ010000000
VERSION     DAPIWQ010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 463)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.268"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(88..>463)
                     /locus_tag="RJ267_001849"
     CDS             complement(88..>463)
                     /locus_tag="RJ267_001849"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389668.1"
                     /translation="YAIYIGIIALIYFFGKDFLLVFDNLKNFFLSVNPAYYMLSLPIS
                     MFFVFIVISFLEKRGIKGVLVYLLTVIPLLFLFFHYSNAKLSVDYLNSEAMFIIFLIL
                     FSSLITPVAIYQMFREKEEVEG"
BASE COUNT          209 a           68 c           46 g          140 t
ORIGIN      
        1 atttttggca ttaaataaaa atccacacat tagtttgttt agtccaacaa gaaaaaataa
       61 aagtcctatt gaaatcattt ttactcctta accttcaact tcttcttttt ctctaaacat
      121 ttgataaatt gccactggtg tgataagaga agaaaaaaga attaagaaaa taataaacat
      181 tgcttcacta ttaaggtaat caacactcaa tttagcgtta gaataatgaa aaaataaaaa
      241 aagtaatgga ataacagtta ataaatatac taaaacaccc tttattcccc ttttttccaa
      301 gaagcttatt acaataaaaa cgaaaaacat acttataggc aaacttagca tataataagc
      361 aggatttact gataagaaaa agttttttaa attatcaaaa actaacaaaa aatcttttcc
      421 aaaaaaataa atcaaagcaa taatgcctat ataaatagca tag
//
LOCUS       DAPIWQ010000262          454 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.269, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000262 DAPIWQ010000000
VERSION     DAPIWQ010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 454)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.269"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..267)
                     /locus_tag="RJ267_001850"
     CDS             complement(<1..267)
                     /locus_tag="RJ267_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389669.1"
                     /translation="MTLDFDFIYNADNDIFEYLLRFYAKNYNYTLSKEENTYHFSIDA
                     DEENLKTFCDSLNLMSHSVFLKKFDVKAGQDFNPCIPEDKEFSKF"
     gene            complement(309..>454)
                     /locus_tag="RJ267_001851"
     CDS             complement(309..>454)
                     /locus_tag="RJ267_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDV7389670.1"
                     /translation="QKSLRAIEYVILHEICHLKFPNHSKEFYDFIEYFMSDFRQREKE
                     FLS"
BASE COUNT          176 a           71 c           41 g          166 t
ORIGIN      
        1 aaattttgaa aattctttat cttctggtat acaagggtta aaatcttgtc ccgcttttac
       61 atcaaatttt ttcaaaaaaa cgctatgact cattaaattc aaagaatcac aaaaagtctt
      121 taaattttct tcatctgcat cgatagaaaa atgataagta ttttcttctt tactaagggt
      181 gtaattataa tttttcgcat aaaaacgcaa taaatattca aaaatatcat tatccgcatt
      241 ataaataaaa tcaaaatcca aagtcatatt atgccttttt tgaaaaataa actataaata
      301 taacattttt aacttaaaaa ttctttctct ctttgcctaa aatcactcat aaaatactca
      361 ataaaatcgt aaaattcttt gctgtgatta gggaatttta agtggcatat ttcatgcaaa
      421 atcacatatt caatagccct taaactcttt tgaa
//
LOCUS       DAPIWQ010000263          450 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.270, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000263 DAPIWQ010000000
VERSION     DAPIWQ010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.270"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            <1..>450
                     /locus_tag="RJ267_001852"
     CDS             <1..>450
                     /locus_tag="RJ267_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HDV7389671.1"
                     /translation="IFYTFTQAKNLEQEQNTSSNLVSVSIAPQAFFVKKIAANTLDVN
                     VILPPNSNEHNFEFKPSTMKKLEKSDIYFTIGLEFEKVFTDKFKQNFSKLQVVNMQKN
                     IALIQTHDTHEHSHEHEHHEHEHFDPHTWLDPILVQTMALNIYDTLI"
BASE COUNT          173 a           74 c           59 g          144 t
ORIGIN      
        1 ggatatttta tactttcaca caagctaaaa atttagagca agaacaaaat actagtagca
       61 atttagttag tgtcagtata gcacctcaag cattttttgt taaaaaaata gctgcaaata
      121 ctctagatgt caatgttatt ttgcccccaa atagcaatga gcataatttt gaatttaaac
      181 caagtactat gaaaaaactt gaaaaaagtg atatttattt cactataggc ttagaatttg
      241 aaaaagtttt tacggataaa tttaaacaaa atttttcaaa acttcaagtt gtaaatatgc
      301 aaaaaaacat agctttgatt caaactcatg atacacacga acactctcat gagcatgaac
      361 accacgaaca tgagcatttt gatcctcata cttggctaga tcctatttta gtccaaacta
      421 tggctttaaa tatttatgac accttgattc
//
LOCUS       DAPIWQ010000264          418 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.271, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000264 DAPIWQ010000000
VERSION     DAPIWQ010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 418)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.271"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..300)
                     /locus_tag="RJ267_001853"
     CDS             complement(<1..300)
                     /locus_tag="RJ267_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDV7389672.1"
                     /translation="MKTVGVVIPIYNVEKYLRECLDSVVNQTYKNLQVVLVNDGSTDE
                     NSLNIAKEYTLKDERFILFDKENGGQSTARNVGIEFFSKEYDFKNITQELKENSLV"
BASE COUNT          139 a           74 c           39 g          166 t
ORIGIN      
        1 tactaaagag ttttctttta attcttgggt aatgttttta aaatcatatt ctttactaaa
       61 gaattctatg ccaacatttc ttgctgtact ttgtccccca ttttccttat caaaaagtat
      121 aaatctttca tcttttaaag tatattcttt ggctatatta agcgagtttt catctgtact
      181 accatcattt acaagtacaa cttgtaaatt tttataagtt tgattgacaa cactatctaa
      241 acattctctt aaatattttt ctacattata gattgggata actacaccta cagttttcac
      301 agtaatttcc taaatatcag tataaaatac atctgctgaa aaaactttat ctttaatctc
      361 tttaagctta tcatcaaaac gattggctat gatcaaatca actttagctc caaaaaca
//
LOCUS       DAPIWQ010000265          362 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.denovo.274, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000265 DAPIWQ010000000
VERSION     DAPIWQ010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 362)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 362)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.denovo.274"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            66..>362
                     /locus_tag="RJ267_001854"
     CDS             66..>362
                     /locus_tag="RJ267_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7389673.1"
                     /translation="MLIIGHKLLKNLDFSFIESVEEVKDNKVYCIVYDEKLISYLSQN
                     DFEFAILVQNKDEIFLANALGAKFLLCNDKKLAKFASKVAEFYVFDSRVLMIVDK"
BASE COUNT          138 a           20 c           58 g          146 t
ORIGIN      
        1 ttgcttggta acaattttat aagtataatt tacaaaataa taaaaaatag agctaaggaa
       61 aaaaaatgct tattattgga cataaattat taaaaaattt agatttttct tttattgaaa
      121 gtgttgaaga agttaaagat aataaagttt attgtattgt ttatgatgaa aaattgattt
      181 cttatttaag tcaaaatgat tttgaatttg ctattttagt tcaaaataaa gatgagatat
      241 ttttagccaa tgctttagga gctaagtttt tgctttgtaa tgataaaaaa cttgcaaaat
      301 ttgctagtaa ggttgcagaa ttttatgttt ttgatagtag ggttttaatg attgttgata
      361 aa
//
LOCUS       DAPIWQ010000266         6883 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.guided.093, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000266 DAPIWQ010000000
VERSION     DAPIWQ010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6883
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.guided.093"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            complement(125..1279)
                     /locus_tag="RJ267_001855"
     CDS             complement(125..1279)
                     /locus_tag="RJ267_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate transporter"
                     /protein_id="HDV7389674.1"
                     /translation="MKTLVAFIKDGVKSVTDTAALFVFSILFFSVLNASGFFTKILNA
                     FLSKMKANVYQVCILTVFITAAVHLDGSGASTFLIVIPALLPIYERLGIRKTSMLLII
                     TSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWIAKIEIK
                     RGAGAGNLSGINLNIEKSEHHNEKWFWLNLLVAIGVIGLLISGIFPSYICFMIGLAII
                     LPLNYPNLKTAKKVLDRASAGAMLMYITLIGAGILIGVFDKSGIMEKMGVLILNFVPD
                     YLGAYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFGAEPLTIAIIMVIARNC
                     ATFISPVVPATLLGCGLAEVNIKDHIKRSFFYIWGISIICLIFAEVAGII"
     gene            1242..1466
                     /locus_tag="RJ267_001856"
     CDS             1242..1466
                     /locus_tag="RJ267_001856"
                     /inference="COORDINATES: protein motif:HMM:NF015397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HDV7389675.1"
                     /translation="MTPSLIKATNVLISKTPPLTPEQAHKNAVELAEHTKAWKGHEVL
                     IATHIDKGHIHTHFIVNSVNYENGHKLQWM"
     gene            1518..1892
                     /locus_tag="RJ267_001857"
     CDS             1518..1892
                     /locus_tag="RJ267_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001129922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TnpV protein"
                     /protein_id="HDV7389676.1"
                     /translation="MAKSLFEELGGKYERQGDYLIPCLTVPAEEEQAIGIWGQRHLDY
                     LKQYRKVTYTNLLTSGRLNAYLADINRQAQERFERLIEGMKQAQGITEQLKAENALEW
                     TGCLNNIRACAREIVEKEIIFA"
     gene            2259..4178
                     /gene="tet(O)"
                     /locus_tag="RJ267_001858"
     CDS             2259..4178
                     /gene="tet(O)"
                     /locus_tag="RJ267_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
                     /protein_id="HDV7389677.1"
                     /translation="MKIINLGILAHVDAGKTTLTESLLYTSGAIAELGSVDEGTTRTD
                     TMNLERQRGITIQTAVTSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAK
                     DGIQAQTRILFHALQIMKIPTIFFINKIDQEGIDLPMVYREMKAKLSSEIIVKQKVGQ
                     HPHINVTDNDDMEQWDAVIMGNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYH
                     GSAKNNLGTRQLIEVIASKFYSSTPEGQSELCGQVFKIEYSEKRRRFVYVRIYSGTLH
                     LRDVIRISEKEKIKITEMCVPTNGELYPSDTACSGDIVILPNDVLQLNSILGNEMLLP
                     QRKFIENPLPMLQTTIAVKKPEQREILLGALTEISDGDPLLKYYVDTTTHEIILSFLG
                     NVQMEVICAILEEKYHVEAEIKEPTVIYMERPLRKAEYTIHIEVPPNPFWASVGLSIE
                     PLPIGSGVQYESRVSLGYLNQSFQNAVMEGVLYGCEQGLYGWKVTDCKICFEYGLYYS
                     PVSTPADFRLLSPIVLEQALKKAGTELLEPYLHFEIYAPQEYLSRAYHDAPRYCADIV
                     STQIKNDEVILKGEIPARCIQEYRNDLTCFTNGQGVCLTELKGYQPAIGKFICQPRRP
                     NSRIDKVRHMFHKLA"
     gene            4230..4403
                     /locus_tag="RJ267_001859"
     CDS             4230..4403
                     /locus_tag="RJ267_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HDV7389678.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
     gene            complement(4778..6070)
                     /locus_tag="RJ267_001860"
     CDS             complement(4778..6070)
                     /locus_tag="RJ267_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001274343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDV7389679.1"
                     /translation="MSANNNELISISHKIELKPNNKAKTHFKKAFGCARLAYNWGLAK
                     WQEYYKQGIKKSHLELKKEFNVIKKEQFPFVYEVSKYATQQPFLNLNLAFQKFFRDLK
                     QGKVSYPKFKKKKDNFGSYYIGGDQAIIKDEKYLKVPNLGLVKMKEKLRFNGKINSFT
                     ISQSADKFFVSFSMQISKDEYLKTHNKAKNNNLALSIDVGLKSFLSLSNGLEIKAPKP
                     LAKFNRLMIKRARQLSKKQHAKTKQEALQGIKKSSNYLKASIKLNKLHRKIANIRSDF
                     LHKLTSSLVANAKYFCLEDLNVKGMMSNHRLAKSISDVSFYEFKRQLEYKSSYNDKEI
                     YQVDRFYPSSKLCSNCGTIKENLALKDRVYICDECGISIDRDYNASLNLLSQLKQKIG
                     KVLAEFTPADLTALLNDLAINQIATSKVETGIQQKSYL"
     gene            complement(6057..6695)
                     /locus_tag="RJ267_001861"
     CDS             complement(6057..6695)
                     /locus_tag="RJ267_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS607-like element ISChh1 family transposase"
                     /protein_id="HDV7389680.1"
                     /translation="MNKLLSIGQASKALGVTIQTLRNWDKKGLLKPDDMTKGGERRYK
                     LETLKAINKNLVFNKDSLKTIAYARVSSHDQKDDLIRQVQVLELYCSKQGFNYEVIQD
                     LGSGMNYYKKGLTKLLNQILDGKVKRLVLTHKDRLLRFGAELVFAICEAKEVEVIIIN
                     KGEESVKFEEELAKDVLEIITVFSARLYGSRSKKNKKLLDEMQEVVVENVSK"
BASE COUNT         2337 a         1202 c         1219 g         2125 t
ORIGIN      
        1 aatttttctc taaagcaaaa taaaataata caaaaaaacg cttatatttt tataaatttt
       61 tgactcaaaa atatcataaa acaatgaacc aatcattgaa aaatcaaaag tttttttatt
      121 ttaattatat tatcccagct acctcagcaa aaatcaagca aataatactt ataccccata
      181 tataaaaaaa gcttcttttg atatgatctt taatattaac ctctgctaaa ccgcaaccta
      241 gcaaagttgc aggcacaaca ggagaaataa atgtcgcaca atttcttgct atcaccatga
      301 taatagctat agtcaaaggt tcagcgccaa aagccttagt tacactcaaa actataggca
      361 tcactccata aaaataagaa tctgtacaaa aaataattgc cattggaaca gccaatatcc
      421 ctaccatcaa aggaatataa gcacctaaat aatctggaac aaaatttaaa atcaaaacac
      481 ccattttctc cataatacca cttttatcaa atacacctat taatatccca gcaccaatta
      541 aagtaatata cataagcatt gcaccagcac ttgcacgatc taaaactttt ttagctgttt
      601 ttaaattagg ataattaagc ggtaaaatta ttgcaagtcc tatcataaag caaatataac
      661 taggaaaaat accactaatt aaaagcccaa taaccccaat agctacaagt aaatttaacc
      721 aaaaccattt ttcattatgg tgttcgcttt tttctatatt taaatttatt ccagacaagt
      781 tacctgcgcc tgcacctctt tttatttcta tcttagcaat ccaaattgcc aaaagaaggg
      841 ataataccaa acctacaatc tgaataggta taatatggtg ccaaagcaaa tttgcatcca
      901 ttcctatgtt agtagccgct cttaaagtag gaccacccca aggaataaca ttcataaccc
      961 ccatagccga agtaataatc aataacattg aagtctttct tatacctaga cgctcataaa
     1021 taggtaataa tgcaggtatt acaataagaa aagtagaagc acctgaacca tctaaatgta
     1081 cagcagcagt aataaaaaca gtaagaatgc aaacttgata tacattagct ttcatttttg
     1141 ataaaaacgc atttaaaatt ttagtaaaaa aaccacttgc atttaaaaca ctaaaaaaga
     1201 gtatagaaaa aacaaacaaa gctgccgtat ccgttacgct tttgactcca tctttaataa
     1261 aagcaaccaa tgttttaata tcaaaaacac ctcctttaac cccggagcag gctcacaaga
     1321 acgctgtcga gctggcagag catacaaagg catggaaagg gcatgaagtt ctgatagcca
     1381 cgcatataga caaggggcat atacacacgc actttattgt caattccgta aattatgaga
     1441 acggtcataa gctccaatgg atgtaggacg gattttgcgg acattcaaaa taaaaaagaa
     1501 tgtggaggta acagacaatg gcaaaatcat tatttgagga actgggcggc aaatacgaaa
     1561 ggcaagggga ttatttgata ccgtgcttaa ctgtacccgc cgaagaagaa caggcaatag
     1621 gcatctgggg gcaacggcat ttagattatc taaaacagta ccgtaaagtt acatacacca
     1681 atcttcttac aagcggcagg ctaaacgcct accttgccga catcaacaga caggcacagg
     1741 aacgctttga aaggctcata gagggtatga aacaggcaca gggcataacg gaacagctaa
     1801 aggcagaaaa cgccttagaa tggacaggat gcctcaataa cataagggct tgtgcgaggg
     1861 agattgtgga aaaggaaatt atttttgcat aaacagatga ttagtggcag ggggaaatcc
     1921 tgccgctttt tctgctttag tttgtcagct tgacaaataa agggttaaag aatataatta
     1981 gattcagtat tatacaagga gttaataaat atgcggcaag gtattcttaa ataaactgtc
     2041 aatttgatag tgggaacaaa aagtagcagt cccgtttcac ttttaatatg gggcttagtt
     2101 ttttgtaccc agtttaagaa tacttttatc atgtgatttt atatgcccga aaacatataa
     2161 gtgttttggg gctattggag ttatttaccc agtgatagga gtatttatca ctgggtattt
     2221 ttatgccctt ttttgggtgt tgataggagg aaaatcacat gaaaataatt aacttaggca
     2281 ttctggctca cgttgacgca ggaaagacaa cattaacgga aagtttattg tataccagtg
     2341 gtgcaattgc agaactaggg agcgtagatg aaggcacaac aaggacagat acaatgaatt
     2401 tggagcgtca aaggggaatc actatccaga cagcagtgac atcttttcag tgggaggatg
     2461 taaaagtcaa cattatagat acgccaggcc atatggattt tttggcggaa gtataccgtt
     2521 ctttatccgt attagacgga gcagtattat tagtttctgc aaaggatggc atacaggcac
     2581 agacccgtat actgtttcat gcactacaga taatgaagat tccgacaatt tttttcatca
     2641 ataaaattga ccaagagggg attgatttgc caatggtata tcgggaaatg aaagcaaagc
     2701 tttcttcgga aattatagtg aagcaaaagg ttgggcagca tccccatata aatgtaacgg
     2761 acaatgacga tatggaacag tgggatgcgg taattatggg aaacgatgaa ctattagaga
     2821 aatatatgtc agggaaaccg tttaaaatgt cagaactgga acaggaagaa aacaggagat
     2881 tccaaaacgg aacgttattt cccgtttatc acggaagcgc taaaaacaat ctggggactc
     2941 ggcagcttat agaagtaatt gccagtaaat tttattcatc aacgcctgaa ggtcaatctg
     3001 aactatgcgg gcaggttttt aagattgaat attcagagaa aaggcggcgt tttgtttatg
     3061 tgcgtatata tagcggaaca ttgcatttga gggatgttat tagaatatct gaaaaagaga
     3121 aaataaaaat cacagagatg tgtgttccga caaacggtga attatatcca tccgatacag
     3181 cctgctctgg tgatattgta attttaccaa atgatgtttt gcagctaaac agtattttgg
     3241 ggaacgaaat gctgttgccg cagagaaaat ttattgaaaa tcctctccct atgctccaaa
     3301 caacgattgc agtaaagaaa cctgaacagc gggaaatatt gcttggggca cttacagaaa
     3361 tttcagatgg cgaccctctt ttaaaatatt atgtggatac tacaacgcat gagattatac
     3421 tttctttttt ggggaatgtg cagatggaag tcatttgtgc catccttgag gaaaaatatc
     3481 atgtggaggc agaaataaaa gagcctactg ttatatatat ggaaagaccg cttagaaaag
     3541 cagaatatac catccacata gaagtcccgc caaatccttt ctgggcttct gtcgggttgt
     3601 ccatagagcc gctccctatt ggaagcggag tgcagtatga aagcagagtt tcacttggat
     3661 atttaaatca atcgttccaa aatgcggtta tggagggggt tctttatggc tgcgagcagg
     3721 ggctgtatgg atggaaagtg acagactgta aaatctgttt tgaatatgga ttgtattata
     3781 gtcctgtaag tacccccgca gactttcggc tgctttcccc tatcgtattg gagcaggctt
     3841 taaaaaaagc agggacagaa ctattagagc catatctcca ctttgaaatt tatgcaccgc
     3901 aggaatatct ctcacgggcg tatcatgatg ctccaaggta ttgtgcagat attgtaagta
     3961 ctcagataaa gaatgacgag gtcattctga aaggagaaat ccctgctaga tgtattcaag
     4021 aatacaggaa cgatttaact tgtttcacaa atgggcaggg agtctgcttg acagagttaa
     4081 aaggatacca gccagctatt ggtaaattta tttgccaacc ccgccgcccg aatagccgta
     4141 tagataaggt tcggcatatg ttccacaagt tagcttaaca gcttgcaaaa gtcatataaa
     4201 atgagatttg aaaggattag agactaatta tgatgaaatg cgaatggata ttgtgtcctg
     4261 tttgtgggag caaaacccgt aataaaatta ggaaggacac tgttttggag aattatcccc
     4321 tttattgtcc aaaatgcaga caagaaagat tgattaaagt tgacaacttg aagataactg
     4381 tcatcaaaga gccagacgct taagacgcag agccgatgaa attgtggaac aattcacgaa
     4441 tcatcggctc tttttgtttc gtatttgaaa gaacaaactc accaaataaa aaaaacgata
     4501 ttcgggtggg ttattttgtt ataccctaaa ttaccctctg agtaagcacg accttaaaga
     4561 cttaaaggaa cggtgcaacg agcagagctg ggaacagggc ttgcatgtgc cggagaaagg
     4621 aaagacattt gctggagaag tccgggaaga aacggtggca tggagcaaag acacctacca
     4681 gcttttgaaa caggcagagc agggaaaggt caaaagctat gtgcaggata ttgccgttcc
     4741 tacaaaccta taaaatccta taaaaagata taaaactcta taaataggat ttttgttgta
     4801 ttcctgtttc aaccttgcta gttgctattt gatttattgc taaatcattt aacagagctg
     4861 tcaagtccgc aggcgtaaat tcggcaagaa ctttgcctat tttttgcttt aattgtgaaa
     4921 gcaaattaag actagcattg tagtctctat caatgctaat tccacattca tcgcaaatat
     4981 aaactctatc ttttagagct aaattttctt ttatagttcc acaattagag cataatttag
     5041 aactaggata aaatctatct acttgataga tttctttatc gttgtagcta gatttatatt
     5101 ctagttgcct tttaaactca taaaaactta catcgcttat agatttagca agtctatgat
     5161 tactcatcat cccttttaca tttaaatcct ctaagcaaaa atatttagca tttgctacca
     5221 agctagaagt aagcttgtgt aaaaaatcac ttcttatatt tgctatttta cgatgcaatt
     5281 tatttagctt aatacttgct tttagataat tgctagattt tttaatgcct tgtaatgctt
     5341 cttgcttggt ttttgcgtgt tgctttttgc ttagctgtct agctcttttt atcattaaac
     5401 gattaaactt agctaatggt ttaggtgctt ttatctctaa gccattagat aaacttaaaa
     5461 acgattttaa gcctacatct atgctaagtg ctagattatt atttttagct ttattatgag
     5521 tttttagata ctcatcttta ctaatttgca tactaaaaga aacaaagaat ttatcagcac
     5581 tttgagaaat agtaaaagaa ttgattttac cattaaatct caatttctct ttcattttta
     5641 caagtcctaa atttggcact tttagatatt tttcatcttt gattattgct tggtctccac
     5701 ctatgtaata agagccgaaa ttatctttct ttttcttaaa ttttggatag cttactttac
     5761 cttgttttaa atctctaaaa aatttttgaa atgctagatt tagatttaaa aaaggctgtt
     5821 gcgtagcata tttacttact tcataaacga aaggaaattg ttcttttttt ataacattaa
     5881 actctttttt aagctctaaa tgagattttt taatgccttg cttatagtat tcttgccatt
     5941 tagcaagtcc ccaattataa gcaagtctag cacaaccaaa ggctttttta aaatgagttt
     6001 tagctttatt atttggcttt aactctatct tatgagaaat gctaataagc tcattattat
     6061 ttgctgacat tttctaccac cacttcttgc atttcatcta aaagtttttt atttttcttt
     6121 gagcgtgagc cataaagtct agctgaaaat actgtgatta tttccaacac atctttggct
     6181 aattcttctt caaattttac gctttcttcg cctttattta ttattattac ttctacttct
     6241 ttggcttcac atatagcaaa tactagctca gcaccaaagc gtaaaagtct gtctttgtga
     6301 gttaaaacta atctttttac tttgccatct agaatttgat ttagcaattt agttaagcct
     6361 tttttataat aattcatacc agagcctaaa tcttgtataa cttcataatt aaagccttgt
     6421 ttagaacaat atagttctaa gacttgaact tgccttatta aatcatcttt ttggtcgtgg
     6481 ctagaaacac gagcataagc aatagttttt aagctatctt tattaaaaac taggttttta
     6541 tttatagctt ttaatgtttc tagcttatac ctacgctctc cacccttagt catatcatca
     6601 ggttttaata agcctttttt atcccaattt ctaagagttt ggatagtaac accaagagct
     6661 ttactagctt gaccgattga taataattta ttcataggac tattttagca aattttaaaa
     6721 aataagtcaa gtaaaatcta taaaatattt atataatttt atagattttt ttataattta
     6781 cttagcagtt ataagccctt aaagctgcac ccacgccaaa accaagctgt tcaagaataa
     6841 gtaaaataca agctacacta atacttacac ttataaaagc taa
//
LOCUS       DAPIWQ010000267         4551 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5906
            SAMN06270790-rid18264873.guided.124, whole genome shotgun sequence.
ACCESSION   DAPIWQ010000267 DAPIWQ010000000
VERSION     DAPIWQ010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270790
            Sequence Read Archive: SRR5209575
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768262.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768262.1
            Genome Coverage       :: 165x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:35:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,868
            CDSs (total)                      :: 1,831
            Genes (coding)                    :: 1,789
            CDSs (with protein)               :: 1,789
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 12 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4551
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270790-rid18264873.guided.124"
                     /isolate="CI_5906"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Alberta"
                     /lat_lon="53.9332 N 116.5765 W"
                     /collection_date="2012-08-08"
                     /collected_by="NML@Lethbridge"
     gene            1..774
                     /locus_tag="RJ267_001862"
     CDS             1..774
                     /locus_tag="RJ267_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-193"
                     /protein_id="HDV7389681.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKVKNDG"
     gene            complement(859..1743)
                     /locus_tag="RJ267_001863"
     CDS             complement(859..1743)
                     /locus_tag="RJ267_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HDV7389682.1"
                     /translation="MIRIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(1740..2414)
                     /gene="modB"
                     /locus_tag="RJ267_001864"
     CDS             complement(1740..2414)
                     /gene="modB"
                     /locus_tag="RJ267_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDV7389683.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKSKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYSLAHQYAFILFIFSFLVLFSLYFIN
                     KKMSFQ"
     gene            complement(2407..2808)
                     /locus_tag="RJ267_001865"
     CDS             complement(2407..2808)
                     /locus_tag="RJ267_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HDV7389684.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSVLMLELKSLENLKI
                     GVSVELLFKEHELCFSASKTLLSVENSFLAKITKIKKGKLLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(2805..3554)
                     /gene="modA"
                     /locus_tag="RJ267_001866"
     CDS             complement(2805..3554)
                     /gene="modA"
                     /locus_tag="RJ267_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDV7389685.1"
                     /translation="MKKFVVFFGILLFVSCLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGVENLKEKANKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAVIIDAKYFSPLEQSYVITKY
                     AKDKKLAFEFNEFIGSSKAKEIFKKYGFSTP"
     gene            complement(3605..4291)
                     /gene="bioC"
                     /locus_tag="RJ267_001867"
     CDS             complement(3605..4291)
                     /gene="bioC"
                     /locus_tag="RJ267_001867"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HDV7389686.1"
                     /translation="MNFLKAKDYEKHAKVQDFMGLKLCEILKNLRISHFEKVFEFGCG
                     RGELSKKLQNFITFDEYLKNDILDFKENSSILIFDMNEIAKQDLSKEKFDLIVSNATL
                     QWLDLKRIIPSLRDMLNQNGILLLSTFAEQNLKEIKQSTGFGLNYFSLNELEQIFKVY
                     FNEVKITQELIKLSFDNALDVFRHLKLSGVNSLGFYPLNKGFLKEFEEKFQNKLTYHP
                     VFILCKNDIK"
     gene            complement(4288..>4551)
                     /locus_tag="RJ267_001868"
     CDS             complement(4288..>4551)
                     /locus_tag="RJ267_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 domain-containing protein"
                     /protein_id="HDV7389687.1"
                     /translation="KEALFKERKNLTKDFIFKDEKALKIELEKLFDFALVKQEENLLW
                     DKVYSSKKDEIFPPNALKNAFSKLIFLNEPHFAFFHFKTWDEL"
BASE COUNT         1687 a          688 c          575 g         1601 t
ORIGIN      
        1 atgaaaaaaa taactttatt tttacttttc ttaaatttag tgtttgggca agataagata
       61 ttaaataatt ggtttaaaga gtataataca agcggcactt ttgtttttta tgatggaaaa
      121 acttgggcga gtaacgactt ttcaagggct atggagactt tctctcccgc ttccactttt
      181 aaaattttta atgctctaat tgcacttgat agtggtgtga taaaaactaa aaaagaaatt
      241 ttttatcact atagaggtga aaaagtattt ttatcttctt gggcgcaaga tatgaattta
      301 agttcagcta taaaatattc taatgttctt gcttttaaag aagtggcaag aagaattggt
      361 atcaaaacta tgcaagaata tttaaacaag cttcattatg gtaatgctaa aatttccaag
      421 atcgatactt tttggcttga caactcacta aaaataagcg ctaaagaaca agcaattttg
      481 ctttttagac tttcacaaaa tagcttacct ttttctcaag aagcaatgaa tagtgttaag
      541 gaaatgattt atttaaaaaa tatggaaaat ttagagcttt ttggaaaaac aggttttaat
      601 gatgagcaaa aaattgcttg gattgtaggt tttgtgtatt taaaagatga aaataaatat
      661 aaggctttcg cgctaaattt agatattgat aaatttgaag atttatataa aagagaaaaa
      721 attttagaaa aatatttaga tgaacttgta aaaaaagtta aaaatgatgg ctagtgagta
      781 tttcgtaaaa tgcaaaaata cttaattgta tgatttgcgt acacttaaag tactcattaa
      841 aaaattaaat ttttgctctt atttatcaag ttttcctacg atgatagggt taaaggcttt
      901 tatggatagc aaaagcgtat cgccgatttt tacatcttga taagctttta gaaattcctc
      961 ttcactaaga gtgattttaa taatatcttg atttaaaagc aaggttaaaa ccactaaaat
     1021 atcacttttt ttaatttcta gcaaagttgc acttaagcgt aattttgcgc tgatatttga
     1081 atgagtaaaa aattcatttt taggaaaatc tttaataatt tttccgtttt taagctctaa
     1141 aattctatga cttaacttat aaatttcagc tagatcatga cttaccaata aagtacttat
     1201 tttaaaatac tctaaaatct tggttaattc atcttgtaaa ttggcacgca ttttaaaatc
     1261 caaagcactc aaaggttcat ctaaaagcaa gatttttggt tctcttgcta aagctcttgc
     1321 taaagctact ctttgtgcct gccccccact taaatgttta ggataaattt tagctaaatt
     1381 ttcaagcttc attaaggcta aaagctcgct aacctttgct ttagaactag cggcataggc
     1441 gatgttttct tttatattca tatttggaaa aagcgcataa tcttgaaaaa caaaaccaat
     1501 ttttcttttt tgtaaagcta aactaaaatt ttttgaagaa tcaaaccaaa gttcattatc
     1561 tacttctata cgccccaatt taggctttat aagtcccgct atgattttta aaagagtggt
     1621 ttttcctgct ccactttcgc caaaaagtgc agtaattttt cctgattcta tatctttttt
     1681 aaaatttaaa tccagtcttc ctttagcggt attcatagga tgattgatat caattcttat
     1741 cattgaaaac tcattttttt attgataaaa taaagactaa aaagtactaa aaaagaaaaa
     1801 ataaacaata taaaagcata ttgatgggct aagctatagt ttaagatttc aagttcatca
     1861 taaatagcta tactagccac taaagtttca ccttgtttat gtcctcctat catcatcacg
     1921 actccaaatt cacccacagt atgggcaaaa ctcatcgcac aagcactaaa aattcctgct
     1981 ttagaattag gtaaaatcac tctaaaaaga gtataaattt tacttttacc taaactataa
     2041 gaagcatcga gcaaatttgg attgatcgat gaaaaggcac tttgcaaagg atttaccata
     2101 aaaggcaaag aaaaaatcaa agaagcaaaa acaagacctt caaaactaaa aaccaaagaa
     2161 agattaaaat attcttttaa aacttgccct aaaaaactat tagccgaaaa agttacaagc
     2221 aaataaaatc ccaaaacact aggaggtaaa atcaaaggca aggaaataaa gctttgaagg
     2281 attgttttaa aaggaaaacg cacaaaactt aacaaataag ctaaaaaaac accgataaaa
     2341 aaaaggataa aagtcgtgat aaaagcaagt ttaaaagtaa gataaagggt ttgtaaaaaa
     2401 gctggatcaa gcactatgac tccttaatac aatatcattt gcttttacaa aacaaagcca
     2461 ttcttgattt tcacaaattt caagttctaa agctttttct ttggtgataa tactagaaag
     2521 ttcattacct ttaaaatcaa aaaatacctg atataaaagt ttgccttttt taatttttgt
     2581 aattttagct aaaaaagaat tttcaacact taaaagagtt ttgcttgcgc taaaacaaag
     2641 ctcatgctct ttaaaaagaa gttctacact cacaccaatt tttaaatttt ctaaagattt
     2701 taattcaagc attaaaacac taaaaatcac ttctttagaa agtattttaa caataactat
     2761 atcctcttga tttaaaagct cacaaatttg tccttttata aggttcatgg tgtgctaaat
     2821 ccgtattttt taaaaatttc ttttgctttt gaagagccaa taaattcgtt aaattcaaag
     2881 gctaattttt tatccttagc gtattttgtg atgacataac tttgctctaa agggctaaaa
     2941 tactttgcat caattataac agccttaccc ttaggatgat tgatagaaga aactaaagaa
     3001 taagccacta tagctatatc tgaatttttg ctatctacat gtaaaacagg cactgagata
     3061 ttttcgccta aaacgatttt atccttaaga agctcattta aacccaaatt ttcaagcact
     3121 tctttagctg ctactccata aggagctact ttaggattgg ctatgcttag atgcgtgatt
     3181 ttgtttgcct tttcttttaa attttcaacg cctccttgga gtaaattttc atccaagcta
     3241 tacaaagcca aaactcccaa aacataaact tttggtttta ttaaagcatt tttatcatca
     3301 taaatagcct tagcatattt agtatccgct gaaaaaaaga gatcaaattc tcttccttgt
     3361 tttaaaagct cataatattt tccagaagca ccaaaaacca attctatttt atcttctgga
     3421 tgtgttttca aaaactcatc tttaacttca ctcatcgcct ttgaagctga agaagctaca
     3481 aaaatactta aattttgcgc atttaaacac gaaacaaaaa gcaaaatccc aaaaaatact
     3541 acaaactttt tcatttagtt ttccttgtgt aaaaatttaa tttttggatt ataacacaaa
     3601 aaattcattt tatatcattt ttgcataaaa taaatacagg atgataagtg agtttgtttt
     3661 gaaatttttc ttcaaattct tttaaaaaac ctttatttaa aggataaaat cctaaagaat
     3721 ttactccgct taattttaaa tgtctaaaaa catctaaagc attatcaaag cttaatttta
     3781 tgagttcttg agtaattttt acttcattaa aatagacttt aaaaatttgc tctaattcat
     3841 ttaagctaaa ataatttaaa ccaaaacccg tgctttgctt gatttctttt aaattttgct
     3901 ctgcaaaagt agaaagaagt aaaatcccat tttgatttag catatctcta agacttggta
     3961 taatgcgttt taaatcaagc cattgcaaag ttgcatttga aacaataaga tcaaatttct
     4021 ctttacttaa atcctgtttt gcaatttcgt tcatatcaaa aattaaaata ctagaatttt
     4081 ctttaaaatc taaaatatcg ttttttaaat actcatcaaa agtaataaaa ttttgaagtt
     4141 ttttgctcaa ttcacccctg ccacaaccaa attcaaatac tttttcaaaa tgtgaaattc
     4201 ttaaattttt taaaatttca caaagtttta aacccataaa atcttgcact tttgcatgtt
     4261 tttcataatc ttttgctttt aaaaaattca aagctcatcc caagttttaa aatgaaaaaa
     4321 agcaaaatgc ggttcattta aaaaaataag ttttgaaaaa gcatttttta aagcatttgg
     4381 tggaaaaatt tcatcttttt tacttgaata aaccttatcc caaagcaaat tttcttcttg
     4441 ttttactaaa gcaaagtcaa aaagtttttc aagctctatt tttaaagctt tttcatcttt
     4501 aaaaataaaa tctttagtta aatttttgcg ttctttaaat aaagcttctt t
//
